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Individual-based model of P. vivax transmission

sPYce is a since cell and single nucleus ATAC-seq integration method across different species implemented in Python.

Pipeline to run CMS in large-scale analyses

Data and code of the article Rasoamalala et al. "Unraveling the role of rat and flea population dynamics on the seasonality of plague epidemics in Madagascar", Proceedings of the National Academy of Sciences (2025).