Explore projects

using Google Chrome with singularity

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

EMBO Course on Integrative Structural Biology 2019 http://meetings.embo.org/event/19-structural-biology

PLUMED Masterclass 22.17

Some helpers to call DESeq2 using rpy2 in python.

Some helpers for HTS data analyses.

Defining small RNAs in C. elegans.

Pipeline to run CMS in large-scale analyses

Some experiments with parallel and functional programming.

Serratus project, read downloader using AWS Batch

Pasteur Course on Integrative Structural Biology (ISB2017)

Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.

Estimating standard descriptive statistics from contig sequences