Explore projects

Estimating standard descriptive statistics from FASTQ files

Backbone for automatic tagging backends; includes a Python implementation of PlanarLarvae.jl features and the Julia-Python communication layer

https://bbrancot.pages.pasteur.fr/prog-web-client-server/

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

ID-based RAG FastAPI: Integration with Langchain and PostgreSQL/pgvector

Fast distance-based phylogenetic inference from unaligned genome sequences

Some wrappers for my snakemake HTS pipelines

You can find here the scripts corresponding to this paper: "A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach"

Course material for the part about R and RStudio of the PhD course.

Bioinformatics and Genome Analyses 2017 - http://meetings.embo.org/event/17-genome

Previous events: http://webext.pasteur.fr/tekaia/BGA_courses.html

searching and extracting universal single-copy genes from PhyloM:bacteria

Downloading genome assembly files from GenBank or RefSeq

Restriction-modification scripts and profiles by Pedro Oliveira