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A patched version of the Jama library. Internal structures accessors and package name added. The original version can be found here : http://math.nist.gov/javanumerics/jama/

A plugin allowing to create a graphic showing the intensity profile of 2D ROIs

My own toolbox used for all the plugins I developed.

RSyntaxTextArea library for Icy. Badically it provides a TextArea component with syntax highlight for different languages.

Fast Fourier Transform Plugin for Icy

coverage profile from read alignments

Cropping reads to reach homogeneous composition among positions

QuickHull library for Icy. Computes convex envelopes of random point sets in 2D or 3D.

Rhino Library for Icy

Manage a list of ROIs that the user can store and pop back in one click.