Explore projects

ROI blocks plugin for Icy. This plugin deliver a set of ROI tools to be used with Protocols (Graphical Programming).

Spot Tracking plugin for Icy

Cropping reads to reach homogeneous composition among positions

A plugin allowing to create a graphic showing the intensity profile of 2D ROIs

QuickHull library for Icy. Computes convex envelopes of random point sets in 2D or 3D.

The Oshi core library (JDK6) for Icy

https://github.com/oshi/oshi

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.

Low-level functions for interactive communication between Icy and Matlab.

Export sequences from Icy to Matlab *.mat files

Inferring alien oligonucleotides (adapters, primers, ...) from FASTQ file

Blocks (Protocols) for Micro-Manager plugin

JavaCL library for Icy

Micro-Manager plugin for Icy

Building a supermatrix of characters from a set of multiple sequence alignments