From c5871d23e7717d603e60ea7521c5a29f0fde5508 Mon Sep 17 00:00:00 2001 From: Marc GARCIA-GARCERA <marc.garcia-garcera@pasteur.fr> Date: Mon, 19 Dec 2016 15:27:32 +0100 Subject: [PATCH] Update README.md --- README.md | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 02908a9..4a84c0c 100644 --- a/README.md +++ b/README.md @@ -10,12 +10,10 @@ The pipeline is basically written in perl. ## How does it work? It requires an important number of pre-computed datasets: - A Core Genome built with 3 clades and its Phylogenetic reconstruction: - - The clade of interest - - Two clades, outgroups of the clade of interest. + - The clade of interest (Query) + - Two clades, outgroups of the clade of interest (Close and Distant). -Each core-gene alignment has to be divided by clade, so we can distinguish between the clade of interest and the outgroups. *The core genes for the three clades must be formated as HMMer database* - -- The Multiple sequence alignments of each Core-Gene +- Each core-gene alignment has to be divided by clade, so we can distinguish between the clade of interest and the outgroups. *The core genes for the three clades must be formated as HMMer database* - A list of reference sequences - A folder with the metagenomic datasets -- GitLab