remove t3ss_family info add predicted_system and ncbi_id

replace all t3ss_family info and search by predicted_system

and add info ncbi_id and search system using ncbi_id

src/couchapp/txssdb/views/by_replicon_name/map.js

@@ -3,10 +3,11 @@ function(doc) {
     	"id" : doc._id,
     	"code" : doc.code ,
     	"name" : doc.replicon.name ,
-    	"T3SS_family" : doc.T3SS_family,
+    	"predicted_system" : doc.predicted_system,
     	"taxid" : doc.replicon.taxid,
+    	"ncbi_id": doc.replicon.ncbi_id,
     	"strain" : doc.replicon.strain ,
-    	"taxonomy" : doc.replicon.taxonomy.join( ", ") ,
+    	"taxonomy" : doc.replicon.taxonomy.join(", ") ,
     	"type" : doc.replicon.type
     });
   }
\ No newline at end of file

src/couchapp/txssdb/views/by_replicon_ncbi_id/map.js

+function(doc) {
+    emit(doc.replicon.ncbi_id, {
+    	"id" : doc._id,
+    	"code" : doc.code ,
+    	"name" : doc.replicon.name ,
+    	"predicted_system" : doc.predicted_system,
+    	"taxid" : doc.replicon.taxid,
+    	"ncbi_id": doc.replicon.ncbi_id,
+    	"strain" : doc.replicon.strain ,
+    	"taxonomy" : doc.replicon.taxonomy.join(", ") ,
+    	"type" : doc.replicon.type
+    });
+  }
\ No newline at end of file

src/couchapp/txssdb/views/by_replicon_strain/map.js

@@ -3,10 +3,11 @@ function(doc) {
     	"id" : doc._id,
     	"code" : doc.code ,
     	"name" : doc.replicon.name ,
-    	"T3SS_family" : doc.T3SS_family,
+    	"predicted_system" : doc.predicted_system,
     	"taxid" : doc.replicon.taxid,
+    	"ncbi_id": doc.replicon.ncbi_id,
     	"strain" : doc.replicon.strain ,
-    	"taxonomy" : doc.replicon.taxonomy.join( ", ") ,
+    	"taxonomy" : doc.replicon.taxonomy.join(", ") ,
     	"type" : doc.replicon.type
     });
   }
\ No newline at end of file

src/couchapp/txssdb/views/by_replicon_taxid/map.js

@@ -3,10 +3,11 @@ function(doc) {
     	"id" : doc._id,
     	"code" : doc.code ,
     	"name" : doc.replicon.name ,
-    	"T3SS_family" : doc.T3SS_family,
+    	"predicted_system" : doc.predicted_system,
     	"taxid" : doc.replicon.taxid,
+    	"ncbi_id": doc.replicon.ncbi_id,
     	"strain" : doc.replicon.strain ,
-    	"taxonomy" : doc.replicon.taxonomy.join( ", ") ,
+    	"taxonomy" : doc.replicon.taxonomy.join(", ") ,
     	"type" : doc.replicon.type
     });
   }
\ No newline at end of file

src/couchapp/txssdb/views/by_replicon_taxonomy/map.js

 function(doc) {
 	taxonomy =  doc.replicon.taxonomy;
-	for( var j=0; j< taxonomy.length ; j++ ){
+	for(var j = 0; j < taxonomy.length; j++){
 		emit(taxonomy[j], {
 	    	"id" : doc._id,
 	    	"code" : doc.code ,
 	    	"name" : doc.replicon.name ,
-	    	"T3SS_family" : doc.T3SS_family,
+	    	"predicted_system" : doc.predicted_system,
 	    	"taxid" : doc.replicon.taxid,
+	    	"ncbi_id": doc.replicon.ncbi_id,
 	    	"strain" : doc.replicon.strain ,
 	    	"taxonomy" : doc.replicon.taxonomy.join( ", ") ,
 	    	"type" : doc.replicon.type

src/couchapp/txssdb/views/predicted_system/map.js

 function(doc) {
-	emit(doc.T3SS_family , 1);
+	emit(doc.predicted_system, 1);
 }
\ No newline at end of file