diff --git a/src/couchapp/txssdb/views/by_replicon_name/map.js b/src/couchapp/txssdb/views/by_replicon_name/map.js index ab85317775fd39b5bba930398ed0b5397e0f2c7e..6257a83b686d4c4f00e7867d6a52024eb05eea1a 100644 --- a/src/couchapp/txssdb/views/by_replicon_name/map.js +++ b/src/couchapp/txssdb/views/by_replicon_name/map.js @@ -3,10 +3,11 @@ function(doc) { "id" : doc._id, "code" : doc.code , "name" : doc.replicon.name , - "T3SS_family" : doc.T3SS_family, + "predicted_system" : doc.predicted_system, "taxid" : doc.replicon.taxid, + "ncbi_id": doc.replicon.ncbi_id, "strain" : doc.replicon.strain , - "taxonomy" : doc.replicon.taxonomy.join( ", ") , + "taxonomy" : doc.replicon.taxonomy.join(", ") , "type" : doc.replicon.type }); } \ No newline at end of file diff --git a/src/couchapp/txssdb/views/by_replicon_ncbi_id/map.js b/src/couchapp/txssdb/views/by_replicon_ncbi_id/map.js new file mode 100644 index 0000000000000000000000000000000000000000..701c3dd8cfa5d78f7a5e6d90e118b8b0015ef881 --- /dev/null +++ b/src/couchapp/txssdb/views/by_replicon_ncbi_id/map.js @@ -0,0 +1,13 @@ +function(doc) { + emit(doc.replicon.ncbi_id, { + "id" : doc._id, + "code" : doc.code , + "name" : doc.replicon.name , + "predicted_system" : doc.predicted_system, + "taxid" : doc.replicon.taxid, + "ncbi_id": doc.replicon.ncbi_id, + "strain" : doc.replicon.strain , + "taxonomy" : doc.replicon.taxonomy.join(", ") , + "type" : doc.replicon.type + }); + } \ No newline at end of file diff --git a/src/couchapp/txssdb/views/by_replicon_strain/map.js b/src/couchapp/txssdb/views/by_replicon_strain/map.js index c03ec698a7a14826529dc16dbb1a2ccc917bc9b7..b6cb1106c7e7f340caa5003c7193cd6abcdc6899 100644 --- a/src/couchapp/txssdb/views/by_replicon_strain/map.js +++ b/src/couchapp/txssdb/views/by_replicon_strain/map.js @@ -3,10 +3,11 @@ function(doc) { "id" : doc._id, "code" : doc.code , "name" : doc.replicon.name , - "T3SS_family" : doc.T3SS_family, + "predicted_system" : doc.predicted_system, "taxid" : doc.replicon.taxid, + "ncbi_id": doc.replicon.ncbi_id, "strain" : doc.replicon.strain , - "taxonomy" : doc.replicon.taxonomy.join( ", ") , + "taxonomy" : doc.replicon.taxonomy.join(", ") , "type" : doc.replicon.type }); } \ No newline at end of file diff --git a/src/couchapp/txssdb/views/by_replicon_taxid/map.js b/src/couchapp/txssdb/views/by_replicon_taxid/map.js index 254578b0f846993bb6a304d8ad21187f150f4a05..439787a5145662b933dd95b88b67a2c66cf8ffa5 100644 --- a/src/couchapp/txssdb/views/by_replicon_taxid/map.js +++ b/src/couchapp/txssdb/views/by_replicon_taxid/map.js @@ -3,10 +3,11 @@ function(doc) { "id" : doc._id, "code" : doc.code , "name" : doc.replicon.name , - "T3SS_family" : doc.T3SS_family, + "predicted_system" : doc.predicted_system, "taxid" : doc.replicon.taxid, + "ncbi_id": doc.replicon.ncbi_id, "strain" : doc.replicon.strain , - "taxonomy" : doc.replicon.taxonomy.join( ", ") , + "taxonomy" : doc.replicon.taxonomy.join(", ") , "type" : doc.replicon.type }); } \ No newline at end of file diff --git a/src/couchapp/txssdb/views/by_replicon_taxonomy/map.js b/src/couchapp/txssdb/views/by_replicon_taxonomy/map.js index f22363c576c0beb31c3cfe639005375902c24585..f7d026d0637e560b05db5c614f0c43a31f1ead7f 100644 --- a/src/couchapp/txssdb/views/by_replicon_taxonomy/map.js +++ b/src/couchapp/txssdb/views/by_replicon_taxonomy/map.js @@ -1,12 +1,13 @@ function(doc) { taxonomy = doc.replicon.taxonomy; - for( var j=0; j< taxonomy.length ; j++ ){ + for(var j = 0; j < taxonomy.length; j++){ emit(taxonomy[j], { "id" : doc._id, "code" : doc.code , "name" : doc.replicon.name , - "T3SS_family" : doc.T3SS_family, + "predicted_system" : doc.predicted_system, "taxid" : doc.replicon.taxid, + "ncbi_id": doc.replicon.ncbi_id, "strain" : doc.replicon.strain , "taxonomy" : doc.replicon.taxonomy.join( ", ") , "type" : doc.replicon.type diff --git a/src/couchapp/txssdb/views/predicted_system/map.js b/src/couchapp/txssdb/views/predicted_system/map.js index f8532a0d984a6de6deba7bba25c51143709dc02e..4363c9a125d3b90ef39f5152ec269878d77a2735 100644 --- a/src/couchapp/txssdb/views/predicted_system/map.js +++ b/src/couchapp/txssdb/views/predicted_system/map.js @@ -1,3 +1,3 @@ function(doc) { - emit(doc.T3SS_family , 1); + emit(doc.predicted_system, 1); } \ No newline at end of file