diff --git a/CapsuleFinder_profiles/Etp.hmm b/CapsuleFinder_profiles/Etp.hmm new file mode 100644 index 0000000000000000000000000000000000000000..34649dc721d25c3198954a4baa18ccf7c01096aa --- /dev/null +++ b/CapsuleFinder_profiles/Etp.hmm @@ -0,0 +1,455 @@ +HMMER3/f [3.1b1 | May 2013] +NAME LMWPc +ACC PF01451.17 +DESC Low molecular weight phosphotyrosine protein phosphatase +LENG 142 +ALPH amino +RF no +MM no +CONS yes +CS yes +MAP yes +DATE Wed Jan 28 01:54:01 2015 +NSEQ 15 +EFFN 2.135010 +CKSUM 2233689299 +GA 23.20 23.20; +TC 23.20 23.20; +NC 23.10 23.10; +BM hmmbuild --amino HMM.ann SEED.ann +SM hmmsearch -Z 80369284 -E 1000 --cpu 4 HMM pfamseq +STATS LOCAL MSV -9.8317 0.71034 +STATS LOCAL VITERBI -10.7460 0.71034 +STATS LOCAL FORWARD -4.0213 0.71034 +HMM A C D E F G H I K L M N P Q R S T V W Y + m->m m->i m->d i->m i->i d->m d->d + COMPO 2.45069 3.94695 2.89082 2.57900 3.36808 2.96153 3.69527 2.80451 2.68429 2.50365 3.58541 3.11559 3.39592 3.04998 2.87203 2.63717 2.90659 2.63172 4.88431 3.64319 + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.00000 * + 1 3.46391 4.70776 5.47625 4.94692 2.82188 4.91522 5.40417 1.19106 4.83295 2.05005 3.59179 5.05827 5.15160 4.97724 4.91337 4.29362 3.70735 1.10646 5.73565 4.56860 1 v - - E + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 2 2.21804 3.49320 4.26270 3.68598 3.40020 2.57196 4.22335 2.42191 3.56528 1.42625 3.40487 3.87510 4.24559 3.78668 3.74544 3.14569 2.68734 2.49139 4.91440 3.72362 2 l - - E + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 3 3.62546 4.96401 5.22134 4.81568 0.77624 4.67670 4.58317 2.72767 4.66288 2.30677 3.66677 4.75302 5.03352 4.71593 4.70463 4.08745 3.90060 1.87167 4.78122 3.19784 3 f - - E + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 4 3.51961 4.74464 5.53959 5.03684 3.95235 5.04344 5.64031 1.42102 4.94664 2.41216 2.75145 5.18336 5.27231 5.14328 5.07274 4.44437 3.77113 0.79475 5.97969 4.80544 4 v - - E + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 5 2.66864 0.55641 4.76327 4.59576 4.77145 3.39511 5.18807 4.14187 4.42775 3.97547 4.86382 4.18122 4.22688 4.66155 4.49927 2.20368 3.22365 3.58764 6.20006 5.03567 5 C - - E + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 6 2.84294 4.36770 4.11809 3.54124 3.48298 3.92484 4.22458 2.39713 2.80813 1.73692 3.45649 3.82705 4.29305 3.69963 3.67359 3.20488 1.75246 2.02754 5.01429 3.81417 6 l - - S + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 7 2.44383 5.17736 3.07576 2.71620 4.65411 1.19563 3.98219 4.08484 2.29025 3.63737 4.45107 3.21853 4.10880 2.57754 3.08945 2.96161 3.22605 3.69400 5.81621 4.48447 7 g - - S + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 8 3.15543 5.23348 3.11292 3.07759 5.17255 2.52243 4.58836 4.81305 3.59514 4.37921 5.24195 0.56317 4.33619 3.82288 4.02232 3.22131 3.60139 4.23298 6.37765 5.06192 8 N - - S + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 9 2.13684 4.29714 4.21531 3.64744 2.95420 3.84915 4.24110 1.44814 3.54062 2.51347 3.45010 3.86272 4.25844 3.77396 3.74453 2.32140 2.67031 2.47797 4.96837 3.77214 9 i - - S + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 10 2.15500 0.91531 4.63624 4.26832 4.28520 2.55918 4.86030 3.47219 4.14277 3.35718 4.26023 4.05610 4.18245 4.34059 4.27562 2.88257 3.10398 2.38820 5.76483 4.61161 10 c - - S + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 11 4.17279 5.81377 4.75841 4.17852 5.39460 4.40903 4.74855 5.06504 3.00575 4.43078 5.46023 4.45138 4.92017 3.97704 0.24805 4.25466 4.41471 4.76297 6.17636 5.21755 11 R - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 12 2.07566 4.55871 4.15950 3.99857 5.04355 3.32643 4.99762 4.48329 4.08466 4.20226 5.01041 3.92481 4.15067 4.32107 4.30588 0.51566 3.17444 3.77415 6.38758 5.22608 12 S - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 13 2.86435 4.72558 3.52155 2.98161 3.84087 3.75868 4.00736 2.64799 2.86673 2.41705 3.76760 3.42872 1.51855 2.39569 3.23013 3.01853 3.10310 2.95617 5.28399 4.02206 13 p - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 14 2.65234 4.44427 4.74621 4.16071 3.40811 4.23621 4.57908 2.05273 4.01005 1.70689 1.40408 4.30288 4.56519 4.17951 4.12058 3.54961 2.83937 2.36243 5.10606 3.95336 14 m - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 15 0.65838 4.52013 4.22548 3.99104 4.99605 2.67386 4.95280 4.44864 4.04889 4.13215 4.91790 3.90714 4.12051 4.26657 4.28794 1.80818 3.12796 3.73790 6.33371 5.18904 15 A - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 16 3.12861 5.57060 2.73148 0.85821 4.91952 3.61023 4.01067 4.38715 2.82918 3.89585 4.71585 3.10023 4.15036 2.70524 3.30104 3.06607 2.68363 3.98125 6.05456 4.63589 16 e - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 17 1.32253 5.10469 3.15143 2.64222 4.47829 2.94262 3.84820 3.90943 2.34353 3.46332 4.25954 2.77415 4.02509 2.98152 2.45496 2.84814 3.08484 3.53643 5.65043 4.31122 17 a - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 18 3.40351 4.70055 5.35626 4.76346 2.26282 4.68219 5.01983 1.59936 4.59245 1.36368 2.26717 4.83711 4.91307 4.62435 4.58831 4.02410 3.62653 1.87222 5.31186 4.23099 18 l - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 19 1.95627 4.47628 4.72240 4.13886 1.50225 4.22278 4.51535 2.60311 3.99016 1.65958 2.78602 4.27941 4.55018 4.14299 4.09711 3.53430 3.30473 2.54943 5.00909 3.80983 19 f - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 20 2.62052 5.35053 3.14819 2.29616 4.72364 3.64098 3.77273 4.17590 1.85873 3.63437 4.39769 2.40281 4.02999 2.60986 1.66532 2.86713 3.12170 3.75922 5.73658 4.38244 20 r - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 21 2.38558 5.25480 2.75732 2.22407 4.59581 3.52872 2.77722 4.07850 2.16195 3.55799 4.29673 2.78045 3.92255 2.41435 2.43105 2.49880 2.98583 3.64330 5.68952 3.38364 21 k - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 22 2.76028 4.79172 3.28026 2.13621 3.98742 3.63181 3.84566 2.59125 2.69201 2.26870 3.87534 3.21343 4.01854 2.51861 2.62821 2.60778 2.99117 3.09970 5.32358 2.90747 22 e - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.08278 4.67135 2.65798 0.61958 0.77255 0.48576 0.95510 + 23 2.07252 4.28673 3.98925 3.40970 3.39752 3.80560 3.37786 2.46823 3.30676 1.80835 3.39448 3.69863 4.17814 3.57096 2.91352 3.07915 2.97473 1.90968 4.89336 3.69043 23 l - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01499 4.60356 5.32591 0.61958 0.77255 0.61068 0.78303 + 24 2.54281 5.24387 2.68327 1.77020 4.58131 3.51137 3.70863 4.06183 2.03167 3.54513 4.28865 2.98127 2.73003 2.80933 2.67709 2.71458 2.70494 3.63082 5.68002 4.27313 24 e - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01499 4.60356 5.32591 0.61958 0.77255 0.61068 0.78303 + 25 2.76653 5.26648 2.51050 2.28059 4.61295 2.80947 3.20514 4.09358 1.72138 3.56715 4.30964 2.99031 3.92179 2.56091 2.35251 2.72772 2.99670 3.65848 5.69255 4.28924 25 k - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.15926 4.60356 1.98624 0.61958 0.77255 0.61068 0.78303 + 26 2.03274 4.95021 3.08400 2.31431 4.20764 3.52424 3.71321 3.62817 2.29655 2.87237 4.01774 3.04359 3.91342 2.58818 2.35066 2.73055 2.93818 2.66461 5.43547 4.09723 26 a - - T + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.18827 4.46160 1.83218 0.61958 0.77255 0.81081 0.58788 + 27 2.94861 5.36501 1.98342 2.32505 4.83244 1.45996 3.92252 4.34593 2.90492 3.86467 4.69330 2.06497 3.96249 3.08743 3.46784 2.88951 3.26295 3.89496 6.02611 4.56482 27 g - - T + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.02049 4.29382 5.01617 0.61958 0.77255 0.49434 0.94154 + 28 2.43462 4.32403 4.58284 3.98980 3.25427 4.07310 4.38291 2.26842 3.83639 1.16653 2.60715 4.12908 4.40646 4.00126 3.94362 3.37775 3.14738 2.43162 4.91662 2.92321 28 l - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01602 4.53756 5.25990 0.61958 0.77255 0.71227 0.67438 + 29 2.87471 5.31154 2.74754 1.70705 4.69481 1.83794 3.84707 4.17459 2.67566 3.68332 4.46219 2.59694 2.95275 2.97486 3.18592 2.50468 3.13791 3.74825 5.84314 4.42511 29 e - - C + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01602 4.53756 5.25990 0.61958 0.77255 0.71227 0.67438 + 30 2.34085 5.02734 2.45340 2.30731 4.30069 3.11093 3.27115 3.05451 2.48489 2.84267 4.08787 2.72516 3.12715 2.83955 2.96179 2.71308 2.94075 2.96808 5.50565 4.14256 30 e - - C + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.07313 4.53756 2.81637 0.61958 0.77255 0.71227 0.67438 + 31 2.48620 5.16589 2.60425 2.40598 4.49453 2.89888 3.66702 3.96722 1.92420 3.09907 4.21321 2.67580 3.87127 2.77026 2.45892 2.38700 2.93233 3.54816 5.60916 4.21055 31 k - 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- H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 137 2.07832 3.67174 3.33780 2.45475 2.99175 2.86638 3.87277 3.28429 2.75555 2.66215 3.80814 3.25731 4.03363 3.09012 2.20727 2.62788 2.98656 3.01788 5.26513 3.98299 153 a - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 138 2.50553 2.24658 4.40380 3.83438 3.43931 3.85297 4.31232 2.64624 3.69882 1.86721 3.44105 3.96650 4.28339 3.90603 3.84814 2.15701 3.04483 1.81680 4.96637 3.77938 154 v - - H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.01400 4.67135 5.39370 0.61958 0.77255 0.48576 0.95510 + 139 2.75406 5.21836 2.75749 2.31307 4.54499 3.10305 3.72306 3.26626 2.09771 3.51538 4.26408 3.00954 3.36498 2.46380 2.11690 2.72532 2.76025 3.02865 5.66189 4.26316 155 k - 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- H + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.00988 4.62194 * 0.61958 0.77255 0.00000 * +//