add citation (index.html)

change system_image (complet simple)
change gene (gene_SctJ gene_SctL  gene_SctK gene_SctN ) color 

src/couchapp/secreton/_attachments/index.html

@@ -26,11 +26,21 @@
    <span class="gene_name">sctQ</span>, <span class="gene_name">sctR</span>, <span class="gene_name">sctS</span>, <span class="gene_name">sctT</span>,
     <span class="gene_name">sctU</span>, <span class="gene_name">sctV</span>), 
   and with an analysis of the genomic context of the hits obtained. 
-  This dataset along with the methodology is described in Abby and Rocha 2012.</p>
+  This dataset along with the methodology is described in <a href="http://www.plosgenetics.org/doi/pgen.1002983">Abby and Rocha 2012</a>.</p>
   
   <p>Proteic profiles used for this study are available to analyze user data on the 
   Mobyle web server: <a href="http://mobyle.pasteur.fr/cgi-bin/portal.py#forms::T3SSscan-FLAGscan" target="_blank">http://mobyle.pasteur.fr/cgi-bin/portal.py#forms::T3SSscan-FLAGscan</a>.  
   These profiles allow to detect both NF-T3SS and flagella.</p>
+  
+  <div class="citation">
+     Citation: <span class="citation_author">Abby SS</span>, 
+     <span class="citation_author">Rocha EPC </span>
+     <span class="citation_date">(2012)</span>
+     <a href="http://www.plosgenetics.org/doi/pgen.1002983" target="_blank"><span class="citation_article_title">The Non-Flagellar Type III Secretion System Evolved from the Bacterial Flagellum and Diversified into Host-Cell Adapted Systems.</span></a>
+     <span class="citation_journal_title">PLoS Genet</span>
+     <span class="citation_issue"> 8(9):</span>
+     <span class="citation_start_page">e1002983.</span>
+  </div>
   </div>
   <div id="request">
   <form>

src/couchapp/secreton/_attachments/style/color.css

@@ -2,10 +2,10 @@
 .gene_SctD { background-color: #550000}
 .gene_SctF { background-color: #4D4D4D}
 .gene_SctI { background-color: #808080}
-.gene_SctJ { background-color: #008080}
-.gene_SctL { background-color: #F80E16}
-.gene_SctK { background-color: #F80E16}
-.gene_SctN { background-color: #F80E16}
+.gene_SctJ { background-color: #da0000}
+.gene_SctL { background-color: #0000FF}
+.gene_SctK { background-color: #0000FF}
+.gene_SctN { background-color: #00ff00}
 .gene_SctO { background-color: LimeGreen}
 .gene_SctQ { background-color: #0000FF}
 .gene_SctR { background-color: #8800AA}

src/couchapp/secreton/_attachments/style/main.css

 /* style for the home page */
 
 body {
-  font:Verdana,Arial,sans-serif;
+  font-family:Verdana,Arial,sans-serif;
   font-size: 0.9em;
 }
 
@@ -22,10 +22,28 @@ h2 {
 #head img{
 	display: block;
     margin: 0 auto; 
-	width:400px;
+	width:459px;
 	
 }
 
+.citation{
+	margin-right:5%;
+	margin-left:5%;
+	border: 1px solid #CCCCCC;
+	background-color: #EFEFEF;
+	color: #000000;
+	padding: 5px;
+	font-size: 0.9em;
+	#line-height: 1.8em;
+}
+.citation_author{}
+.citation_date{}
+.citation_article_title{}
+.citation_journal_title{}
+.citation_issue{}
+.citation_start_page{}
+.citation_doi{}
+
 .gene_name{
 	font-style:italic;
 }