Commits · master · genolist / legiolist-pre-processing

14 Nov, 2020 2 commits
- output the correct file ! · 70d40f83
  Remi PLANEL authored Nov 14, 2020
  
  70d40f83
- Create a sample ortho table · 88b3648d
  Remi PLANEL authored Nov 14, 2020
  
  88b3648d
09 Sep, 2020 5 commits
- add script in process · 76f6a4f4
  Remi PLANEL authored Sep 09, 2020
  
  76f6a4f4
- Handle go files · 2ecd2a42
  Remi PLANEL authored Sep 09, 2020
  
  2ecd2a42
- force name table_ortho.txt · 46d360b9
  Remi PLANEL authored Sep 09, 2020
  
  46d360b9
- ortho instead of $ortho · 003923de
  Remi PLANEL authored Sep 09, 2020
  
  003923de
- output $ortho instead of hard coded name · 07d298d5
  Remi PLANEL authored Sep 09, 2020
  
  07d298d5
09 Apr, 2020 1 commit
- Add process to translate gene name in table ortho · f8032e10
  Remi PLANEL authored Apr 09, 2020
  
  f8032e10
08 Apr, 2020 3 commits
- Merge master update README · 493e7454
  Remi PLANEL authored Apr 08, 2020
  
  493e7454
- Remove the chromosome entry in gff · cd886f1f
  Remi PLANEL authored Apr 08, 2020
  
  cd886f1f
- Update README.md · f0a73c9f
  Remi PLANEL authored Apr 08, 2020
  
  f0a73c9f
07 Apr, 2020 1 commit
- Remove prefix in conda env · ab5b41f8
  Remi PLANEL authored Apr 07, 2020
  
  ab5b41f8
27 Mar, 2020 1 commit
- Add metadata for workflow index · 4c403085
  Remi PLANEL authored Mar 27, 2020
  
  4c403085
11 Mar, 2020 1 commit
- Remove DNA entry from gff · 98faa67c
  Remi PLANEL authored Mar 11, 2020
  
  98faa67c
05 Mar, 2020 3 commits
- how to run the workflow · 1d0da346
  Remi PLANEL authored Mar 05, 2020
  
  1d0da346
- add command option --so in the help message · e3c1b171
  Remi PLANEL authored Mar 05, 2020
  
  e3c1b171
- Remove post-process · b6d25869
  Remi PLANEL authored Mar 05, 2020
  
  b6d25869
04 Mar, 2020 18 commits
- default for help · ffb4f2a6
  Remi PLANEL authored Mar 04, 2020
  
  ffb4f2a6
- set cluster queue and qos to hubbioti · 7a9e65bf
  Remi PLANEL authored Mar 04, 2020
  
  7a9e65bf
- Add reports and pasteur cluster config · 42fbe009
  Remi PLANEL authored Mar 04, 2020
  
  42fbe009
- Add help message · 9aba8d83
  Remi PLANEL authored Mar 04, 2020
  
  9aba8d83
- Update conda env · 80c852be
  Remi PLANEL authored Mar 04, 2020
  
  80c852be
- default so file · b84a90ac
  Remi PLANEL authored Mar 04, 2020
  
  b84a90ac
- Update name docker image · 8a603480
  Remi PLANEL authored Mar 04, 2020
  
  8a603480
- add default so.obo file · a7133b14
  Remi PLANEL authored Mar 04, 2020
  
  a7133b14
- remove path to script since ./bin is in the PATH · f2d6f6eb
  Remi PLANEL authored Mar 04, 2020
  
  f2d6f6eb
- Add container tag for docker · 10916a58
  Remi PLANEL authored Mar 04, 2020
  
  10916a58
- Update conda env with bioperl 1.7 · 66007b9a
  Remi PLANEL authored Mar 04, 2020
  
  66007b9a
- Add Dockerfile · 7b0bce3e
  Remi PLANEL authored Mar 04, 2020
  
  7b0bce3e
- Add nextflow config · fba8e5aa
  Remi PLANEL authored Mar 04, 2020
  
  fba8e5aa
- Add conda env · b8d548d0
  Remi PLANEL authored Mar 04, 2020
  
  b8d548d0
- Ignore nextflow outputs · b759a8c6
  Remi PLANEL authored Mar 04, 2020
  
  b759a8c6
- Replace RBS to Shine_Dalgarno_sequence · 0cd07062
  Remi PLANEL authored Mar 04, 2020
  
  0cd07062
- Remove sequence version in genome fasta output · 07bd2103
  Remi PLANEL authored Mar 04, 2020
  
  07bd2103
- Handle DNA and chromosome entry in gff · 290d45aa
  Remi PLANEL authored Mar 04, 2020
  
  290d45aa
03 Mar, 2020 5 commits
- Remove bp_genbank2gff3. Use bioperl install · cb285c1f
  Remi PLANEL authored Mar 03, 2020
  
  cb285c1f
- Add nextflow workflow · e21d1bd3
  Remi PLANEL authored Mar 03, 2020
  
  e21d1bd3
- ignore nextflow logs · 6e626ad2
  Remi PLANEL authored Mar 03, 2020
  
  6e626ad2
- Add pre-processing scripts · eb568d9b
  Remi PLANEL authored Mar 03, 2020
  
  eb568d9b
- Initial commit · 8b13e5fe
  Remi PLANEL authored Mar 03, 2020
  
  8b13e5fe