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genolist
legiolist
Commits
5133a362
Commit
5133a362
authored
Aug 14, 2020
by
Remi PLANEL
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Comment some data integration for tests
parent
d3991a1c
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project.xml
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5133a362
...
...
@@ -43,7 +43,7 @@
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
</source>
<!--
<source name="Lfallonii-gff" type="legiolist-gff" version="4.1.1">
<property name="gff3.taxonId" value="96230"/>
<property name="gff3.seqDataSourceName" value="LegioList Lfalloni"/>
...
...
@@ -405,7 +405,7 @@
<property name="fasta.includes" value="LpPhila.faa"/>
<property name="src.data.dir" location="/home/intermine/intermine/data/pre-process-data/genome/protein"/>
</source>
-->
<!-- <source name="uniprot" type="uniprot">
...
...
@@ -418,7 +418,7 @@
<property name="loadtrembl" value="true"/>
</source> -->
<source
name=
"legiolist-homology"
type=
"legiolist-homology"
version=
"4.1.1"
>
<
!-- <
source name="legiolist-homology" type="legiolist-homology" version="4.1.1">
<property name="src.data.dir" location="/home/intermine/intermine/data/pre-process-data/"/>
<property name="src.data.dir.includes" value="table_orthos.txt"/>
<property name="legiolistTaxids" value="272624 297246 297245 400673 423212 1046632 661367 451 449 96230"/>
...
...
@@ -442,7 +442,7 @@
<property name="src.data.dir" location="/home/intermine/intermine/data/pre-process-data"/>
<property name="pubmed.organisms" value="272624 297246 297245 400673 423212 1046632 661367 451 449 96230"/>
<property name="src.data.dir.includes" value="gene2pubmed"/>
</source>
</source>
-->
<source
name=
"update-publications"
type=
"update-publications"
dump=
"true"
>
<property
name=
"src.data.file"
location=
"publications.xml"
/>
...
...
@@ -453,12 +453,12 @@
<post-processing>
<post-process
name=
"create-references"
/>
<post-process
name=
"create-chromosome-locations-and-lengths"
/>
<
!-- <
post-process name="create-chromosome-locations-and-lengths"/>
<post-process name="do-sources" />
<post-process name="populate-child-features"/>
<post-process name="create-location-range-index"/>
<post-process name="create-overlap-view" />
<post-process
name=
"create-search-index"
/>
<post-process name="create-search-index" />
-->
<post-process
name=
"summarise-objectstore"
/>
<post-process
name=
"create-autocomplete-index"
/>
<post-process
name=
"transfer-sequences"
/>
...
...
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