Skip to content
GitLab
Menu
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
genolist
legiolist
Commits
5133a362
Commit
5133a362
authored
Aug 14, 2020
by
Remi PLANEL
Browse files
Comment some data integration for tests
parent
d3991a1c
Changes
1
Hide whitespace changes
Inline
Side-by-side
project.xml
View file @
5133a362
...
...
@@ -43,7 +43,7 @@
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
</source>
<!--
<source name="Lfallonii-gff" type="legiolist-gff" version="4.1.1">
<property name="gff3.taxonId" value="96230"/>
<property name="gff3.seqDataSourceName" value="LegioList Lfalloni"/>
...
...
@@ -405,7 +405,7 @@
<property name="fasta.includes" value="LpPhila.faa"/>
<property name="src.data.dir" location="/home/intermine/intermine/data/pre-process-data/genome/protein"/>
</source>
-->
<!-- <source name="uniprot" type="uniprot">
...
...
@@ -418,7 +418,7 @@
<property name="loadtrembl" value="true"/>
</source> -->
<source
name=
"legiolist-homology"
type=
"legiolist-homology"
version=
"4.1.1"
>
<!--
<source name="legiolist-homology" type="legiolist-homology" version="4.1.1">
<property name="src.data.dir" location="/home/intermine/intermine/data/pre-process-data/"/>
<property name="src.data.dir.includes" value="table_orthos.txt"/>
<property name="legiolistTaxids" value="272624 297246 297245 400673 423212 1046632 661367 451 449 96230"/>
...
...
@@ -442,7 +442,7 @@
<property name="src.data.dir" location="/home/intermine/intermine/data/pre-process-data"/>
<property name="pubmed.organisms" value="272624 297246 297245 400673 423212 1046632 661367 451 449 96230"/>
<property name="src.data.dir.includes" value="gene2pubmed"/>
</source>
</source>
-->
<source
name=
"update-publications"
type=
"update-publications"
dump=
"true"
>
<property
name=
"src.data.file"
location=
"publications.xml"
/>
...
...
@@ -453,12 +453,12 @@
<post-processing>
<post-process
name=
"create-references"
/>
<post-process
name=
"create-chromosome-locations-and-lengths"
/>
<!--
<post-process name="create-chromosome-locations-and-lengths"/>
<post-process name="do-sources" />
<post-process name="populate-child-features"/>
<post-process name="create-location-range-index"/>
<post-process name="create-overlap-view" />
<post-process
name=
"create-search-index"
/>
<post-process name="create-search-index" />
-->
<post-process
name=
"summarise-objectstore"
/>
<post-process
name=
"create-autocomplete-index"
/>
<post-process
name=
"transfer-sequences"
/>
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment