Display homologue's gene name and organism infos

webapp/src/main/webapp/WEB-INF/webconfig-model.xml

@@ -61,7 +61,7 @@
     </fields>
   </class>
 
- <class className="org.intermine.model.bio.Location">
+  <class className="org.intermine.model.bio.Location">
     <fields>
       <fieldconfig fieldExpr="feature.primaryIdentifier"/>
       <fieldconfig fieldExpr="start"/>
@@ -92,7 +92,7 @@
   <class className="org.intermine.model.bio.OntologyTerm">
     <headerconfig>
       <titles>
-      <title mainTitles="identifier|name" subTitles="ontology.name" />
+        <title mainTitles="identifier|name" subTitles="ontology.name" />
       </titles>
     </headerconfig>
     <fields>
@@ -120,7 +120,7 @@
   <class className="org.intermine.model.bio.Organism">
     <headerconfig>
       <titles>
-      <title mainTitles="name"/>
+        <title mainTitles="name"/>
       </titles>
     </headerconfig>
     <fields>
@@ -143,9 +143,9 @@
 
   <class className="org.intermine.model.bio.Publication">
     <headerconfig>
-  <titles>
-    <title mainTitles="title" />
- </titles>
+      <titles>
+        <title mainTitles="title" />
+      </titles>
     </headerconfig>
     <inlinelist>
       <table path="authors.name" showLinksToObjects="true" />
@@ -163,9 +163,7 @@
 
   <class className="org.intermine.model.bio.Sequence">
     <fields>
-      <fieldconfig fieldExpr="residues" fieldExporter="org.intermine.bio.web.export.ResidueFieldExporter"
-                   sectionOnRight="true" sectionTitle="Residues" openByDefault="true"
-                   showInSummary="false" showInResults="false" showInInlineCollection="false"/>
+      <fieldconfig fieldExpr="residues" fieldExporter="org.intermine.bio.web.export.ResidueFieldExporter" sectionOnRight="true" sectionTitle="Residues" openByDefault="true" showInSummary="false" showInResults="false" showInInlineCollection="false"/>
       <fieldconfig fieldExpr="length"/>
     </fields>
     <tabledisplayer src="/model/sequenceShortDisplayer.jsp"/>
@@ -188,57 +186,39 @@
     </fields>
   </class>
 
-<!-- exporters -->
+  <class className="org.intermine.model.bio.Homologue">
+    <fields>
+      <fieldconfig fieldExpr="type"/>
+      <fieldconfig fieldExpr="homologue.primaryIdentifier" label="DB identifier"/>
+      <fieldconfig fieldExpr="homologue.symbol" label="Symbol"/>
+      <fieldconfig fieldExpr="homologue.length" label="Length"/>
+      <fieldconfig fieldExpr="homologue.chromosome.primaryIdentifier" label="DB identifier"/>
+      <fieldconfig fieldExpr="homologue.organism.shortName" label="Short Name"/>
+    </fields>
+  </class>
+
+
+  <!-- exporters -->
   <tableExportConfig id="sequence" className="org.intermine.bio.web.export.SequenceHttpExporter"/>
   <tableExportConfig id="gff3" className="org.intermine.bio.web.export.GFF3HttpExporter"/>
   <tableExportConfig id="bed" className="org.intermine.bio.web.export.BEDHttpExporter"/>
 
   <reportdisplayers>
 
-   <reportdisplayer javaClass="org.intermine.bio.web.displayer.GeneOntologyDisplayer"
-                     jspName="model/geneOntologyDisplayer.jsp"
-                     replacesFields="goAnnotation,ontologyAnnotations"
-                     placement="Genomics"
-                     types="Gene"/>
-
-    <reportdisplayer javaClass="org.intermine.bio.web.displayer.GeneStructureDisplayer"
-                     jspName="model/geneStructureDisplayer.jsp"
-                     replacesFields="transcripts,exons,CDSs,introns,UTRs,fivePrimeUTR,threePrimeUTR"
-                     placement="Genomics"
-                     types="Gene,Transcript,Exon,Intron,UTR,CDS"/>
-
-    <reportdisplayer javaClass="org.intermine.bio.web.displayer.SequenceFeatureDisplayer"
-                     jspName="model/sequenceFeatureDisplayer.jsp"
-                     replacesFields="chromosome,chromosomeLocation,sequence,length,sequenceOntologyTerm,locations,cytoLocation"
-                     placement="summary"
-                     types="SequenceFeature"/>
-
-    <reportdisplayer javaClass="org.intermine.bio.web.displayer.UniProtCommentsDisplayer"
-                     jspName="model/uniProtCommentsDisplayer.jsp"
-                     replacesFields=""
-                     placement="Proteins"
-                     types="Gene,Protein"/>
+    <reportdisplayer javaClass="org.intermine.bio.web.displayer.GeneOntologyDisplayer" jspName="model/geneOntologyDisplayer.jsp" replacesFields="goAnnotation,ontologyAnnotations" placement="Genomics" types="Gene"/>
+
+    <reportdisplayer javaClass="org.intermine.bio.web.displayer.GeneStructureDisplayer" jspName="model/geneStructureDisplayer.jsp" replacesFields="transcripts,exons,CDSs,introns,UTRs,fivePrimeUTR,threePrimeUTR" placement="Genomics" types="Gene,Transcript,Exon,Intron,UTR,CDS"/>
+
+    <reportdisplayer javaClass="org.intermine.bio.web.displayer.SequenceFeatureDisplayer" jspName="model/sequenceFeatureDisplayer.jsp" replacesFields="chromosome,chromosomeLocation,sequence,length,sequenceOntologyTerm,locations,cytoLocation" placement="summary" types="SequenceFeature"/>
+
+    <reportdisplayer javaClass="org.intermine.bio.web.displayer.UniProtCommentsDisplayer" jspName="model/uniProtCommentsDisplayer.jsp" replacesFields="" placement="Proteins" types="Gene,Protein"/>
 
   </reportdisplayers>
 
-<!-- widgets -->
-<widgets>
-      <graphdisplayer id="chromosome_distribution_for_gene"
-                      title="Chromosome Distribution"
-                      description="Actual: number of items in this list found on each chromosome.  Expected: given the total number of items on the chromosome and the number of items in this list, the number of items expected to be found on each chromosome."
-                      graphType="ColumnChart"
-                      rangeLabel="Count"
-                      domainLabel="Chromosome"
-                      filterLabel="Organism"
-                      filters="organism.name=[list]"
-                      startClass="Gene"
-                      typeClass="Gene"
-                      categoryPath="chromosome.primaryIdentifier"
-                      seriesLabels="Actual,Expected"
-                      seriesPath="ActualExpectedCriteria"
-                      constraints="organism.name=[Organism]"
-                      views="primaryIdentifier, symbol, secondaryIdentifier, organism.name, chromosome.primaryIdentifier,
+  <!-- widgets -->
+  <widgets>
+    <graphdisplayer id="chromosome_distribution_for_gene" title="Chromosome Distribution" description="Actual: number of items in this list found on each chromosome.  Expected: given the total number of items on the chromosome and the number of items in this list, the number of items expected to be found on each chromosome." graphType="ColumnChart" rangeLabel="Count" domainLabel="Chromosome" filterLabel="Organism" filters="organism.name=[list]" startClass="Gene" typeClass="Gene" categoryPath="chromosome.primaryIdentifier" seriesLabels="Actual,Expected" seriesPath="ActualExpectedCriteria" constraints="organism.name=[Organism]" views="primaryIdentifier, symbol, secondaryIdentifier, organism.name, chromosome.primaryIdentifier,
                              chromosomeLocation.start, chromosomeLocation.end, chromosomeLocation.strand"/>
 
-</widgets>
+  </widgets>
 </webconfig>