Commit 5ce3686f authored by Remi  PLANEL's avatar Remi PLANEL
Browse files

update data-source

parent 2fb7ad63
...@@ -3,22 +3,42 @@ ...@@ -3,22 +3,42 @@
<property name="common.os.prefix" value="common"/> <property name="common.os.prefix" value="common"/>
<sources> <sources>
<source name="legiolist-gff" type="gff"> <!-- Legio paris -->
<property name="gff3.taxonId" value="446"/> <source name="legiolist-gff-297246" type="gff">
<property name="gff3.seqDataSourceName" value="LegioList"/> <property name="gff3.taxonId" value="297246"/>
<property name="gff3.dataSourceName" value="LegioList"/> <property name="gff3.seqDataSourceName" value="LegioList Legionella pneumophila str. Paris"/>
<property name="gff3.dataSourceName" value="LegioList Legionella pneumophila str. Paris"/>
<property name="gff3.seqClsName" value="Chromosome"/> <property name="gff3.seqClsName" value="Chromosome"/>
<property name="gff3.dataSetTitle" value="Legionella pneumophila genome"/> <property name="gff3.dataSetTitle" value="LegioList Legionella pneumophila str. Paris"/>
<property name="fasta.includes" value="LegioParis_10-05-2012_LegioList.genbank.gff3"/>
<property name="src.data.dir" location="/home/rplanel/projects/legiolist-intermine/data/legiolist/genomes/gff/legiolist-gff"/> <property name="src.data.dir" location="/home/rplanel/projects/legiolist-intermine/data/legiolist/genomes/gff/legiolist-gff"/>
</source> </source>
<source name="legiolist-chromosome-fasta-297246" type="fasta" dump="true">
<property name="fasta.className" value="org.intermine.model.bio.Chromosome"/>
<property name="fasta.dataSourceName" value="LegioList"/>
<property name="fasta.dataSetTitle" value="LegioList chromosome sequence"/>
<property name="fasta.taxonId" value="297246"/>
<property name="fasta.includes" value="LegioParis_10-05-2012_LegioList.fasta"/>
<property name="src.data.dir" location="/home/rplanel/projects/legiolist-intermine/data/legiolist/genomes/fasta"/>
</source>
<source name="entrez-organism" type="entrez-organism">
<property name="src.data.file" location="organisms.xml"/>
</source>
</sources> </sources>
<post-processing> <post-processing>
<post-process name="create-references"/>
<post-process name="create-chromosome-locations-and-lengths"/>
<post-process name="transfer-sequences" dump="true"/>
<post-process name="do-sources" /> <post-process name="do-sources" />
<post-process name="create-attribute-indexes" /> <post-process name="create-attribute-indexes" />
<post-process name="create-search-index" />
<post-process name="summarise-objectstore" /> <post-process name="summarise-objectstore" />
<post-process name="create-autocomplete-index" /> <post-process name="create-autocomplete-index" />
<post-process name="create-search-index" />
</post-processing> </post-processing>
</project> </project>
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