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genolist
legiolist
Commits
fa969ee8
Commit
fa969ee8
authored
Apr 08, 2020
by
Remi PLANEL
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Plain Diff
Add other protein strains
parent
8ae8f0d3
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1 changed file
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171 additions
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project.xml
project.xml
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project.xml
View file @
fa969ee8
...
...
@@ -99,6 +99,29 @@
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/fasta"
/>
</source>
<source
name=
"Lhackeliae-protein-gene"
type=
"legiolist-gene-prot"
version=
"4.1.1"
>
<property
name=
"legiolist.taxid"
value=
"449"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
<property
name=
"src.data.dir.includes"
value=
"Lhackeliae-prot-gene.tsv"
/>
</source>
<source
name=
"Lhackeliae-protein-fasta"
type=
"fasta"
version=
"4.1.1"
>
<property
name=
"fasta.taxonId"
value=
"449"
/>
<property
name=
"fasta.dataSetTitle"
value=
"Legiolist protein sequence"
/>
<property
name=
"fasta.className"
value=
"org.intermine.model.bio.Protein"
/>
<property
name=
"fasta.classAttribute"
value=
"primaryIdentifier"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.suffix"
value=
"protein"
/>
<property
name=
"fasta.includes"
value=
"Lhackeliae.faa"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
</source>
<source
name=
"Lmicadei-gff"
type=
"legiolist-gff"
version=
"4.1.1"
>
...
...
@@ -119,6 +142,27 @@
</source>
<source
name=
"Lmicadei-protein-gene"
type=
"legiolist-gene-prot"
version=
"4.1.1"
>
<property
name=
"legiolist.taxid"
value=
"451"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
<property
name=
"src.data.dir.includes"
value=
"Lmicadei-prot-gene.tsv"
/>
</source>
<source
name=
"Lmicadei-protein-fasta"
type=
"fasta"
version=
"4.1.1"
>
<property
name=
"fasta.taxonId"
value=
"451"
/>
<property
name=
"fasta.dataSetTitle"
value=
"Legiolist protein sequence"
/>
<property
name=
"fasta.className"
value=
"org.intermine.model.bio.Protein"
/>
<property
name=
"fasta.classAttribute"
value=
"primaryIdentifier"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.suffix"
value=
"protein"
/>
<property
name=
"fasta.includes"
value=
"Lmicadei.faa"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
</source>
<source
name=
"Long_Mage-gff"
type=
"legiolist-gff"
version=
"4.1.1"
>
<property
name=
"gff3.taxonId"
value=
"661367"
/>
...
...
@@ -137,6 +181,24 @@
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/fasta"
/>
</source>
<source
name=
"Long_Mage-protein-gene"
type=
"legiolist-gene-prot"
version=
"4.1.1"
>
<property
name=
"legiolist.taxid"
value=
"661367"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
<property
name=
"src.data.dir.includes"
value=
"Long_Mage-prot-gene.tsv"
/>
</source>
<source
name=
"Long_Mage-protein-fasta"
type=
"fasta"
version=
"4.1.1"
>
<property
name=
"fasta.taxonId"
value=
"661367"
/>
<property
name=
"fasta.dataSetTitle"
value=
"Legiolist protein sequence"
/>
<property
name=
"fasta.className"
value=
"org.intermine.model.bio.Protein"
/>
<property
name=
"fasta.classAttribute"
value=
"primaryIdentifier"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.suffix"
value=
"protein"
/>
<property
name=
"fasta.includes"
value=
"Long_Mage.faa"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
</source>
...
...
@@ -158,6 +220,29 @@
</source>
<source
name=
"Lorraine-protein-gene"
type=
"legiolist-gene-prot"
version=
"4.1.1"
>
<property
name=
"legiolist.taxid"
value=
"1046632"
/>
<property
name=
"legiolist-gene-prot.dataSetTitle"
value=
"LegioList Lorraine proteins"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
<property
name=
"src.data.dir.includes"
value=
"Lorraine-prot-gene.tsv"
/>
</source>
<source
name=
"Lorraine-protein-fasta"
type=
"fasta"
version=
"4.1.1"
>
<property
name=
"fasta.taxonId"
value=
"1046632"
/>
<property
name=
"fasta.dataSetTitle"
value=
"Legiolist Lorraine protein sequence"
/>
<property
name=
"fasta.className"
value=
"org.intermine.model.bio.Protein"
/>
<property
name=
"fasta.classAttribute"
value=
"primaryIdentifier"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.suffix"
value=
"protein"
/>
<property
name=
"fasta.includes"
value=
"Lorraine.faa"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
</source>
...
...
@@ -179,6 +264,29 @@
</source>
<source
name=
"LpAlcoy-protein-gene"
type=
"legiolist-gene-prot"
version=
"4.1.1"
>
<property
name=
"legiolist.taxid"
value=
"423212"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
<property
name=
"src.data.dir.includes"
value=
"LpAlcoy-prot-gene.tsv"
/>
</source>
<source
name=
"LpAlcoy-protein-fasta"
type=
"fasta"
version=
"4.1.1"
>
<property
name=
"fasta.taxonId"
value=
"423212"
/>
<property
name=
"fasta.dataSetTitle"
value=
"Legiolist protein sequence"
/>
<property
name=
"fasta.className"
value=
"org.intermine.model.bio.Protein"
/>
<property
name=
"fasta.classAttribute"
value=
"primaryIdentifier"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.suffix"
value=
"protein"
/>
<property
name=
"fasta.includes"
value=
"LpAlcoy.faa"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
</source>
<source
name=
"LpCorby-gff"
type=
"legiolist-gff"
version=
"4.1.1"
>
...
...
@@ -199,6 +307,27 @@
</source>
<source
name=
"LpCorby-protein-gene"
type=
"legiolist-gene-prot"
version=
"4.1.1"
>
<property
name=
"legiolist.taxid"
value=
"400673"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
<property
name=
"src.data.dir.includes"
value=
"LpCorby-prot-gene.tsv"
/>
</source>
<source
name=
"LpCorby-protein-fasta"
type=
"fasta"
version=
"4.1.1"
>
<property
name=
"fasta.taxonId"
value=
"400673"
/>
<property
name=
"fasta.dataSetTitle"
value=
"Legiolist protein sequence"
/>
<property
name=
"fasta.className"
value=
"org.intermine.model.bio.Protein"
/>
<property
name=
"fasta.classAttribute"
value=
"primaryIdentifier"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.suffix"
value=
"protein"
/>
<property
name=
"fasta.includes"
value=
"LpCorby.faa"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
</source>
...
...
@@ -220,6 +349,25 @@
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/fasta"
/>
</source>
<source
name=
"LpLens-protein-gene"
type=
"legiolist-gene-prot"
version=
"4.1.1"
>
<property
name=
"legiolist.taxid"
value=
"297245"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
<property
name=
"src.data.dir.includes"
value=
"LpLens-prot-gene.tsv"
/>
</source>
<source
name=
"LpLens-protein-fasta"
type=
"fasta"
version=
"4.1.1"
>
<property
name=
"fasta.taxonId"
value=
"297245"
/>
<property
name=
"fasta.dataSetTitle"
value=
"Legiolist protein sequence"
/>
<property
name=
"fasta.className"
value=
"org.intermine.model.bio.Protein"
/>
<property
name=
"fasta.classAttribute"
value=
"primaryIdentifier"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.suffix"
value=
"protein"
/>
<property
name=
"fasta.includes"
value=
"LpLens.faa"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
</source>
<source
name=
"LpPhila-gff"
type=
"legiolist-gff"
version=
"4.1.1"
>
...
...
@@ -239,7 +387,28 @@
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/fasta"
/>
</source>
<source
name=
"uniprot"
type=
"uniprot"
>
<source
name=
"LpPhila-protein-gene"
type=
"legiolist-gene-prot"
version=
"4.1.1"
>
<property
name=
"legiolist.taxid"
value=
"272624"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
<property
name=
"src.data.dir.includes"
value=
"LpPhila-prot-gene.tsv"
/>
</source>
<source
name=
"LpPhila-protein-fasta"
type=
"fasta"
version=
"4.1.1"
>
<property
name=
"fasta.taxonId"
value=
"272624"
/>
<property
name=
"fasta.dataSetTitle"
value=
"Legiolist protein sequence"
/>
<property
name=
"fasta.className"
value=
"org.intermine.model.bio.Protein"
/>
<property
name=
"fasta.classAttribute"
value=
"primaryIdentifier"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.sequenceType"
value=
"protein"
/>
<property
name=
"fasta.suffix"
value=
"protein"
/>
<property
name=
"fasta.includes"
value=
"LpPhila.faa"
/>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/genome/protein"
/>
</source>
<!-- <source name="uniprot" type="uniprot">
<property name="uniprot.organisms" value="272624 297246 297245 400673 423212 1046632 661367 451 449 96230"/>
<property name="src.data.dir" location="/home/rplanel/projects/legiolist-intermine/data/legiolist/genomes/uniprot"/>
<property name="creatego" value="true"/>
...
...
@@ -247,7 +416,7 @@
<property name="allowduplicates" value="false"/>
<property name="loadfragments" value="true"/>
<property name="loadtrembl" value="true"/>
</source>
</source>
-->
<source
name=
"legiolist-homology"
type=
"legiolist-homology"
version=
"4.1.1"
>
<property
name=
"src.data.dir"
location=
"/home/intermine/intermine/data/pre-process-data/"
/>
...
...
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