From 12d3125245e7cc66263454ba4eba92156746b566 Mon Sep 17 00:00:00 2001 From: Gaelle Letort <gaelle.letort.gl@gmail.com> Date: Thu, 13 Feb 2025 16:51:38 +0100 Subject: [PATCH] with nap-epyseg --- setup.cfg | 2 +- src/epicure/start_epicuring.py | 2 -- 2 files changed, 1 insertion(+), 3 deletions(-) diff --git a/setup.cfg b/setup.cfg index beae1f7..acaf869 100644 --- a/setup.cfg +++ b/setup.cfg @@ -1,6 +1,6 @@ [metadata] name = epicure -version = 0.2.5 +version = 0.2.6 description = Napari plugin to manually correct epithelia segmentation in movies long_description = file: README.md long_description_content_type = text/markdown diff --git a/src/epicure/start_epicuring.py b/src/epicure/start_epicuring.py index e9d39c0..894b191 100644 --- a/src/epicure/start_epicuring.py +++ b/src/epicure/start_epicuring.py @@ -86,9 +86,7 @@ def start_epicure(): ut.show_error("This option requires the plugin napari-epyseg that is missing.\nInstall it and restart") print("Running EpySeg with default parameters on the movie. To change the settings, use the napari-epyseg plugin outside of EpiCure or EpySeg module directly") parameters = {"tile_width":32, "tile_height":32, "model":"epyseg default(v2)"} - print(Epic.img.shape) segres = run_epyseg( Epic.img, parameters ) - print(segres.shape) segname = str(get_files.image_file.value)+"_epyseg.tif" ut.writeTif( segres, segname, 1.0, "uint8", what="Epyseg results saved in " ) get_files.segmentation_file.value = segname -- GitLab