Update Edit authored by Gaëlle  LETORT's avatar Gaëlle LETORT
...@@ -141,7 +141,7 @@ One recurrent segmentation error can be a large cell wrongly split in two cells, ...@@ -141,7 +141,7 @@ One recurrent segmentation error can be a large cell wrongly split in two cells,
<img width="80%" src="uploads/e45a313e28305ae6844e24bac17cdbc5/mergeInside.png"> <img width="80%" src="uploads/e45a313e28305ae6844e24bac17cdbc5/mergeInside.png">
</p> </p>
## Sanity check ## Sanity check :white_check_mark:
**This option performs several checks to ensure that the files follows EpiCure's standards and can fix some errors.** **This option performs several checks to ensure that the files follows EpiCure's standards and can fix some errors.**
...@@ -153,7 +153,7 @@ It also checks if the labels seemed ok or if something is weird. ...@@ -153,7 +153,7 @@ It also checks if the labels seemed ok or if something is weird.
**Allows to create group of cells (classify them).** Cells can be manually assigned to a cell group by clicking on them. This is useful to distinguish different type of cells visually or/and in the analysis in the Outputs options. **Allows to create group of cells (classify them).** Cells can be manually assigned to a cell group by clicking on them. This is useful to distinguish different type of cells visually or/and in the analysis in the Outputs options.
`Group name` allows to choose the name to give to a new Group of cells, or to assign a cell to the current `Group name` group. `Group name` allows to choose the name to give to a new Group of cells, or to assign a cell to the current `Group name` group. Write a new name to enter a new group, or choose in the list an existing group to insert the cell in that group.
A cell can be assigned to the current group with :round_pushpin: **<kbd>Shift+Left click</kbd> on the cell**. A cell can be assigned to the current group with :round_pushpin: **<kbd>Shift+Left click</kbd> on the cell**.
:round_pushpin: **<kbd>Shift+Right click</kbd> removes the cell under the cursor from its current group**, and set it as unassigned. :round_pushpin: **<kbd>Shift+Right click</kbd> removes the cell under the cursor from its current group**, and set it as unassigned.
...@@ -174,7 +174,7 @@ When the segmentation is :round_pushpin: **saved by clicking on <kbd>s</kbd>** w ...@@ -174,7 +174,7 @@ When the segmentation is :round_pushpin: **saved by clicking on <kbd>s</kbd>** w
This option allows to do operations on several neighboring cells at once, by selecting a region. This option allows to do operations on several neighboring cells at once, by selecting a region.
## Draw a selection/Region of Interest ## Draw a selection/Region of Interest :white_square_button:
When you select the `Selection option` in the `Edit` panel, press the first button `Draw/Select ROI` to draw a new shape or select an existing one. The shapes should be in the `Drawings` layer, by default not visible. When you click on this button, the layer will be visible and active. When you select the `Selection option` in the `Edit` panel, press the first button `Draw/Select ROI` to draw a new shape or select an existing one. The shapes should be in the `Drawings` layer, by default not visible. When you click on this button, the layer will be visible and active.
... ...
......