`EpiCure` proposes features to ease the manual segmentation correction on single time frame (the current one), through several [shortcuts](#shortcuts).
`EpiCure` proposes features to ease the manual segmentation correction on single time frame (the current one), through several [shortcuts](#shortcuts).
## Shortcuts
## Shortcuts
The segmented cells are represented as label. There are several possibility for label edition in `Napari` + extra features from `EpiCure`.
The segmented cells are represented as label. There are several possibility for label edition in `Napari` + extra features from `EpiCure`.
EpiCure shortcuts are linked to the `Segmentation` layer, so it should be selected for the shortcuts to work.
EpiCure shortcuts are linked to the `Segmentation` layer, so it should be selected for the shortcuts to work.
### General options
### General options
* Press <kbd>s</kbd> to save the current state of the segmentation. The file will be saved in the output folder, named `**imagename**_labels.tif` and can be reloaded later.
* Press <kbd>s</kbd> to save the current state of the segmentation. The file will be saved in the output folder, named `**imagename**_labels.tif` and can be reloaded later. Additional informations specific to EpiCure (cell groups, tracks graph (lineage), suspects) are saved at the same time, in a file named `**imagename**_epidata.pkl`. When the EpiCure files are re-opened, this file will be reloaded.
***Press <kbd>h</kbd> to show/hide the main `EpiCure` shortcuts** list. Press it several times to go through the different shortcut lists.
***Press <kbd>h</kbd> to show/hide the main `EpiCure` shortcuts** list.
* Press <kbd>a</kbd> to open a new op-up window that list ALL the EpiCure shortcuts.
### Visualization :eye: shortcuts:
### Visualization :eye: shortcuts:
...
@@ -29,8 +30,8 @@ Shortcut: **press <kbd>v</kbd> to show/hide the movie** (visible).
...
@@ -29,8 +30,8 @@ Shortcut: **press <kbd>v</kbd> to show/hide the movie** (visible).
* Click on the eye icon next to the `Segmentation` layer to show/hide it.
* Click on the eye icon next to the `Segmentation` layer to show/hide it.
Shortcut: _press <kbd>b</kbd> to show/hide the segmentation_ (binary).
Shortcut: _press <kbd>b</kbd> to show/hide the segmentation_ (binary).
***Press <kbd>5</kbd> to switch to zoom/moving mode**.
***Press <kbd>5</kbd> to switch to zoom/moving mode**.
***Press <kbd>g</kbd> to see only the movie layer**.
***Press <kbd>c</kbd> to see only the movie layer**.
***Press <kbd>g</kbd> to show/hide a grid to have a spatial repere**. See [Display](https://gitlab.pasteur.fr/gletort/epicure/-/wikis/Display) documentation for more details.
