In EpiCure, an event is a point (a cell at a given time point) that has been detected as potentially wrongly segmented/tracked and might need manual correction (suspect) or that corresponds to a cellular event (division, extrusion..).
In EpiCure, an event is a point (a cell at a given time point) that has been detected as potentially wrongly segmented/tracked and might need manual correction (suspect) or that corresponds to a cellular event (division, extrusion..).
Several features allows to detect possible segmentation/tracking errors and to display and navigate through these potential errors.
Several features allows to detect possible segmentation/tracking errors and to display and navigate through these potential errors.
...
@@ -107,21 +108,21 @@ Click on `Inspect track` to launch the analyse with the selected parameters. It
...
@@ -107,21 +108,21 @@ Click on `Inspect track` to launch the analyse with the selected parameters. It
:round_pushpin: **Press <kbd>x</kbd> to show/hide the suspect points.**
:round_pushpin: **Press <kbd>x</kbd> to show/hide the suspect points.**
## Suspects layer
## Events layer
This layer contains points (shown as cross) placed at the center of each cell suspected of being not correctly segmented. Several features can be used to detect suspects, either from a static features [`Outliers options`]("outliers-options) or from analyzing the tracks [`Track options`](#track-options).
This layer contains points (shown as cross) placed at the center of each cell suspected of being not correctly segmented. Several features can be used to detect suspects, either from a static features [`Outliers options`]("outliers-options) or from analyzing the tracks [`Track options`](#track-options). Cellular events are also displayed in this layer. Divisions are marked with blue circle by default.
The score of the suspect is the number of suspicion (features) associated to that cell.
The score of a suspicious event is the number of suspicion (features) associated to that cell.
## Display options
## Display options
Use the interface `Display options` in the `Suspect` onglet (right panel) to change the display of the points (the size or the color).
Use the interface `Display options` in the `Inspect` onglet (right panel) to change the display of the points (the size or the color).
You can choose the reference feature for coloring the suspects. If a cell was suspected by the selected feature, the point will appear red, otherwise if the suspicion came from another feature, the point will appear white. The `score` feature shows the number of suspicions (features) associated to the cell from white (1) to bright red (maximum).
You can choose the reference feature for coloring the events. If a cell was suspected by the selected feature, the point will appear red, otherwise if the suspicion came from another feature, the point will appear white. The `score` feature shows the number of suspicions (features) associated to the cell from white (1) to bright red (maximum).
`Go to suspect` will zoom on the selected suspect (numbered in `Suspect n°` parameter) and print in the Terminal window why this point was flag has a possible segmentation mistake. :round_pushpin: **<kbd>Ctrl+Alt+Left click</kbd> on a point to zoom on it and displays suspicion information**
`Go to event` will zoom on the selected event (numbered in `Event n°` parameter) and print in the Terminal window why this point was flag as a possible segmentation mistake or which cellular event it is. :round_pushpin: **<kbd>Ctrl+Alt+Left click</kbd> on a point to zoom on it and displays suspicion information**
To directly navigate between suspects, :round_pushpin: **Press <kbd>Space</kbd> to move from one suspect to another**. The view will directly to go to the next suspect, zoom on it, and displays the information in the terminal.
To directly navigate between suspects, :round_pushpin: **Press <kbd>Space</kbd> to move from one suspect to another**. The view will directly to go to the next suspect, zoom on it, and displays the information in the terminal. Other events (division) will be skipped.
If the segmentation/tracking is in fact correct, you can remove the point by clicking on `Exonerate current suspect`. :round_pushpin: **<kbd>Ctrl+Alt+Right click</kbd> to remove the clicked point from suspect list**
If the segmentation/tracking is in fact correct, you can remove the point by clicking on `Exonerate current event`. :round_pushpin: **<kbd>Ctrl+Alt+Right click</kbd> to remove the clicked point from event list**
