| ... | @@ -5,6 +5,7 @@ Some measurement options are/will be proposed here, as well as options to export |
... | @@ -5,6 +5,7 @@ Some measurement options are/will be proposed here, as well as options to export |
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* [Apply on: define current selection](#define-current-selection)
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* [Apply on: define current selection](#define-current-selection)
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* [Export to extern plugins](#export-to-other-plugins)
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* [Export to extern plugins](#export-to-other-plugins)
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* [Export segmentations](#save-segmentations)
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* [Export segmentations](#save-segmentations)
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* [Export events](#export-events)
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* [Measure cell features](#measure-cell-features)
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* [Measure cell features](#measure-cell-features)
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* [Measure track features](#measure-track-features)
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* [Measure track features](#measure-track-features)
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| ... | @@ -47,6 +48,18 @@ The button `Save segmentation(s)` allows to save the label image of the segmente |
... | @@ -47,6 +48,18 @@ The button `Save segmentation(s)` allows to save the label image of the segmente |
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Allows to save the skeleton: the binary of the junctions, of the current selection (only selected cells, cells of a given group, or all cells). The file will be saved in the output folder.
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Allows to save the skeleton: the binary of the junctions, of the current selection (only selected cells, cells of a given group, or all cells). The file will be saved in the output folder.
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The skeleton can also be displayed by pressing <kbd>k>/kdb> when the segmentation layer is active.
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The skeleton can also be displayed by pressing <kbd>k>/kdb> when the segmentation layer is active.
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# Export events
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Export events (in the `Inspect` onglet) to use in extern plugins/softwares as `Fiji`.
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You can choose which type of events to export (suspect events, divisions, extrusions...). For this click the `Choose events` button and select the event types to export. Each type of event will be exported separately.
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Then choose the type of format to export the event.
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Currently, only `Fiji ROI` is proposed. It will save the list of events as `Fiji point ROI` in a `.zip` file which can be open in Fiji through the `ROI Manager`. This export format is also compatible with [`DeXtrusion`](https://gitlab.pasteur.fr/gletort/dextrusion) so that EpiCure can be used to create a training dataset for DeXtrusion.
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---
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---
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# Measure cell features
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# Measure cell features
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