Update Outputs authored by Gaëlle  LETORT's avatar Gaëlle LETORT
...@@ -3,7 +3,7 @@ Options to measure and export tracks. ...@@ -3,7 +3,7 @@ Options to measure and export tracks.
Some measurement options are/will be proposed here, as well as options to export the segmentation/measurements to use in other image analysis softwares as Fiji. Some measurement options are/will be proposed here, as well as options to export the segmentation/measurements to use in other image analysis softwares as Fiji.
* [Apply on: define current selection](#define-current-selection) * [Apply on: define current selection](#define-current-selection)
* [Export to extern plugins](#other-plugins) * [Export to extern plugins](#export-to-other-plugins)
* [Export segmentations](#save-segmentations) * [Export segmentations](#save-segmentations)
* [Measure cell features](#measure-cell-features) * [Measure cell features](#measure-cell-features)
* [Measure track features](#measure-track-features) * [Measure track features](#measure-track-features)
...@@ -18,6 +18,16 @@ You can choose which cells to analyse/export with the `Apply on` option in the i ...@@ -18,6 +18,16 @@ You can choose which cells to analyse/export with the `Apply on` option in the i
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# Export to other plugins
The output of EpiCure are also compatible with other Napari plugins, and this panel allows you to communicate directly with those plugins. It will open a new Napari window, with the corresponding plugin launched, and the necessary layer. You need to have these plugins already installed in Napari, or install them in the `Plugins` panel of Napari.
Currently, we propose direct export to:
* [Griotte Napari plugin](https://www.napari-hub.org/plugins/napari-griottes) that allows to visualize/export the connectivity graphs between the cells.
* [Cluster-Plotter Napari plugin](https://github.com/BiAPoL/napari-clusters-plotter) that allows to cluster objects based on their properties and interactive visualisation of the results.
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# Save segmentations # Save segmentations
The curated segmented and tracked file can be exported in several formats to be used directly in other softwares/pipelines. The curated segmented and tracked file can be exported in several formats to be used directly in other softwares/pipelines.
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