| ... | @@ -65,6 +65,17 @@ The feature table contains measurement of cell properties based on the segmentat |
... | @@ -65,6 +65,17 @@ The feature table contains measurement of cell properties based on the segmentat |
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If you click on one value in the table, it will show the corresponding cell at the corresponding time frame.
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If you click on one value in the table, it will show the corresponding cell at the corresponding time frame.
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The table can be sorted by a given column by clicking on the column name.
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The table can be sorted by a given column by clicking on the column name.
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## Temporal graph
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`Table to temporal graph` button opens a new panel to choose a feature to analyse temporally. With this option, you can display a graph of the evolution of the value of a measured feature in time. The individual curves of each cell will be displayed. If you have created Groups, you can also display the average value by Group.
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A dotted vertical line in this panel indicates at which frame you are currently in the main Napari panel in the displayed layers. If you move the current frame in the main Napari interface, the vertical line will move accordingly.
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You can save either the current plot image by clicking the `save plot image` button, or the raw values used to do the plot (the x and y values, as a `.csv` file) with the `save plot data` button.
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## Feature map
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## Feature map
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Each measured feature (in the table) can also be displayed as a colored map, where each cell is colored by the value of this feature.
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Each measured feature (in the table) can also be displayed as a colored map, where each cell is colored by the value of this feature.
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... | @@ -83,15 +94,17 @@ This option will add a layer `CellOrientation` that contains the drawn lines of |
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## Temporal graph
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`Table to temporal graph` button opens a new panel to choose a feature to analyse temporally. With this option, you can display a graph of the evolution of the value of a measured feature in time. The individual curves of each cell will be displayed. If you have created Groups, you can also display the average value by Group.
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## Statistiques table
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A dotted vertical line in this panel indicates at which frame you are currently in the main Napari panel in the displayed layers. If you move the current frame in the main Napari interface, the vertical line will move accordingly.
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Once the table has been calculated, you can interactively look at the statistical distribution of the selected features with this option.
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It uses the [skrub module](https://skrub-data.org/stable/index.html) that should be installed in your virtual environment to use it [`pip install skrub`](https://skrub-data.org/stable/install.html).
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This option will open an `html` page that contains the table and statistics for each column. You can click on the column/case to have more information on the distribution of the selected feature. The onglet `Association` in the html page gives information on the co-dependency of features.
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You can save either the current plot image by clicking the `save plot image` button, or the raw values used to do the plot (the x and y values, as a `.csv` file) with the `save plot data` button.
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:warning: Be careful that these statistics are only exploratory and do not take into account the dependencies between data (temporal dependencies for a cell with the same label, cell from the same lineage...).
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