From 1417c652ceb6f91f0ce31c13c859f00e5c7a1653 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Ga=C3=ABlle=20=20LETORT?= <gaelle.letort@pasteur.fr>
Date: Tue, 25 Mar 2025 10:53:30 +0100
Subject: [PATCH] doc

---
 README.md | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index a8e2a67..dfe23ef 100755
--- a/README.md
+++ b/README.md
@@ -90,8 +90,9 @@ If you use the data from the Zenodo repository, the file to use to test this plu
 The input of the process should be a `.tiff` 3D and temporal stack with one or more channels. 
 If you want to use fix points registration option, you should have a file that contains the position of each tracked point at each time.
 See in our demo dataset for the format of this file.
-It can be for example generated from a [TrackMate](https://imagej.net/plugins/trackmate/) file with the macro [getTimePoints.ijm](./src/napari-3dtimereg/getTimePoints.ijm) proposed in this repository.
-
+It can be for example generated from a [TrackMate](https://imagej.net/plugins/trackmate/) file with the macro [getTimePoints.py](./src/napari_3dtimereg/getTimePoints.py) proposed in this repository. 
+Run it in Fiji by going to `Plugins>Macro>Edit`, openning the [getTimePoints.py](./src/napari_3dtimereg/getTimePoints.py) macro and then click `Run`.
+It will generate a file `reference_points.csv` that you should put in the same folder as your movie to register (or select this file in the plugin interface in the `refpoints file` parameter).
 
 Activate your python virtual environement in which napari and the plugin are installed.
 For example, if the name of the environment is `timereg-env`, type: `conda activate timereg-env`.
-- 
GitLab