From 179e3eab7b69e59f7c27f20c1991ae69fb25ef2a Mon Sep 17 00:00:00 2001 From: gmillot <gael.millot@pasteur.fr> Date: Fri, 21 Jan 2022 11:33:47 +0100 Subject: [PATCH] release v7.2.0: better priority for slurm --- README.md | 5 +++++ dataset/test.fastq2_bowtie2_mini.cov | 0 dataset/test.fastq2_q20_mini.cov | 0 dataset/test.fastq2_q20_nodup_mini.cov | 0 dev/test.config | 6 +++--- nextflow.config | 6 +++--- 6 files changed, 11 insertions(+), 6 deletions(-) mode change 100644 => 100755 dataset/test.fastq2_bowtie2_mini.cov mode change 100644 => 100755 dataset/test.fastq2_q20_mini.cov mode change 100644 => 100755 dataset/test.fastq2_q20_nodup_mini.cov diff --git a/README.md b/README.md index baac98c..4069cb9 100755 --- a/README.md +++ b/README.md @@ -198,6 +198,11 @@ Gitlab developers ## WHAT'S NEW IN +### v7.2.0 + +1) better priority for slurm + + ### v7.1.0 1) dev/test.config adapted to slurm diff --git a/dataset/test.fastq2_bowtie2_mini.cov b/dataset/test.fastq2_bowtie2_mini.cov old mode 100644 new mode 100755 diff --git a/dataset/test.fastq2_q20_mini.cov b/dataset/test.fastq2_q20_mini.cov old mode 100644 new mode 100755 diff --git a/dataset/test.fastq2_q20_nodup_mini.cov b/dataset/test.fastq2_q20_nodup_mini.cov old mode 100644 new mode 100755 diff --git a/dev/test.config b/dev/test.config index 4dd054e..88bfc44 100755 --- a/dev/test.config +++ b/dev/test.config @@ -75,11 +75,11 @@ result_folder_name="20220120_res_CL14985_test" //// end general variables //// slurm variables -fastqueue = 'hubbioit' // fast for -p option of slurm. Example: fastqueue = 'common,dedicated'. Example: fastqueue = 'hubbioit' +fastqueue = 'common,dedicated' // fast for -p option of slurm. Example: fastqueue = 'common,dedicated'. Example: fastqueue = 'hubbioit' fastqos= '--qos=fast' // fast for --qos option of slurm. Example: fastqos= '--qos=fast' -normalqueue = 'hubbioit' // normal for -p option of slurm. Example: normalqueue = 'bioevo' +normalqueue = 'common,dedicated' // normal for -p option of slurm. Example: normalqueue = 'bioevo' normalqos = '--qos=hubbioit' // normal for --qos option of slurm. Example: normalqos = '--qos=dedicated' -longqueue = 'hubbioit' // slow for -p option of slurm. Example: longqueue = 'bioevo' +longqueue = 'common,dedicated' // slow for -p option of slurm. Example: longqueue = 'bioevo' longqos = '--qos=hubbioit' // slow for --qos option of slurm. Example: longqos = '--qos=dedicated' add_options = ' ' // additional option of slurm. Example: addoptions = '--exclude=maestro-1101,maestro-1034' or add_options = ' ' //// end slurm variables diff --git a/nextflow.config b/nextflow.config index 76191b2..07f2f5e 100755 --- a/nextflow.config +++ b/nextflow.config @@ -76,11 +76,11 @@ result_folder_name="20220120_res_CL14985_test" //// end general variables //// slurm variables -fastqueue = 'hubbioit' // fast for -p option of slurm. Example: fastqueue = 'common,dedicated'. Example: fastqueue = 'hubbioit' +fastqueue = 'common,dedicated' // fast for -p option of slurm. Example: fastqueue = 'common,dedicated'. Example: fastqueue = 'hubbioit' fastqos= '--qos=fast' // fast for --qos option of slurm. Example: fastqos= '--qos=fast' -normalqueue = 'hubbioit' // normal for -p option of slurm. Example: normalqueue = 'bioevo' +normalqueue = 'common,dedicated' // normal for -p option of slurm. Example: normalqueue = 'bioevo' normalqos = '--qos=hubbioit' // normal for --qos option of slurm. Example: normalqos = '--qos=dedicated' -longqueue = 'hubbioit' // slow for -p option of slurm. Example: longqueue = 'bioevo' +longqueue = 'common,dedicated' // slow for -p option of slurm. Example: longqueue = 'bioevo' longqos = '--qos=hubbioit' // slow for --qos option of slurm. Example: longqos = '--qos=dedicated' add_options = ' ' // additional option of slurm. Example: addoptions = '--exclude=maestro-1101,maestro-1034' or add_options = ' ' //// end slurm variables -- GitLab