From 179e3eab7b69e59f7c27f20c1991ae69fb25ef2a Mon Sep 17 00:00:00 2001
From: gmillot <gael.millot@pasteur.fr>
Date: Fri, 21 Jan 2022 11:33:47 +0100
Subject: [PATCH] release v7.2.0: better priority for slurm

---
 README.md                              | 5 +++++
 dataset/test.fastq2_bowtie2_mini.cov   | 0
 dataset/test.fastq2_q20_mini.cov       | 0
 dataset/test.fastq2_q20_nodup_mini.cov | 0
 dev/test.config                        | 6 +++---
 nextflow.config                        | 6 +++---
 6 files changed, 11 insertions(+), 6 deletions(-)
 mode change 100644 => 100755 dataset/test.fastq2_bowtie2_mini.cov
 mode change 100644 => 100755 dataset/test.fastq2_q20_mini.cov
 mode change 100644 => 100755 dataset/test.fastq2_q20_nodup_mini.cov

diff --git a/README.md b/README.md
index baac98c..4069cb9 100755
--- a/README.md
+++ b/README.md
@@ -198,6 +198,11 @@ Gitlab developers
 
 ## WHAT'S NEW IN
 
+### v7.2.0
+
+1) better priority for slurm
+
+
 ### v7.1.0
 
 1) dev/test.config adapted to slurm
diff --git a/dataset/test.fastq2_bowtie2_mini.cov b/dataset/test.fastq2_bowtie2_mini.cov
old mode 100644
new mode 100755
diff --git a/dataset/test.fastq2_q20_mini.cov b/dataset/test.fastq2_q20_mini.cov
old mode 100644
new mode 100755
diff --git a/dataset/test.fastq2_q20_nodup_mini.cov b/dataset/test.fastq2_q20_nodup_mini.cov
old mode 100644
new mode 100755
diff --git a/dev/test.config b/dev/test.config
index 4dd054e..88bfc44 100755
--- a/dev/test.config
+++ b/dev/test.config
@@ -75,11 +75,11 @@ result_folder_name="20220120_res_CL14985_test"
 //// end general variables
 
 //// slurm variables
-fastqueue = 'hubbioit' // fast for -p option of slurm. Example: fastqueue = 'common,dedicated'. Example: fastqueue = 'hubbioit'
+fastqueue = 'common,dedicated' // fast for -p option of slurm. Example: fastqueue = 'common,dedicated'. Example: fastqueue = 'hubbioit'
 fastqos= '--qos=fast' // fast for --qos option of slurm. Example: fastqos= '--qos=fast'
-normalqueue = 'hubbioit' // normal for -p option of slurm. Example: normalqueue = 'bioevo'
+normalqueue = 'common,dedicated' // normal for -p option of slurm. Example: normalqueue = 'bioevo'
 normalqos = '--qos=hubbioit' // normal for --qos option of slurm. Example: normalqos = '--qos=dedicated'
-longqueue = 'hubbioit' // slow for -p option of slurm. Example: longqueue = 'bioevo'
+longqueue = 'common,dedicated' // slow for -p option of slurm. Example: longqueue = 'bioevo'
 longqos = '--qos=hubbioit' // slow for --qos option of slurm. Example: longqos = '--qos=dedicated'
 add_options = ' ' // additional option of slurm. Example: addoptions = '--exclude=maestro-1101,maestro-1034' or add_options = ' '
 //// end slurm variables
diff --git a/nextflow.config b/nextflow.config
index 76191b2..07f2f5e 100755
--- a/nextflow.config
+++ b/nextflow.config
@@ -76,11 +76,11 @@ result_folder_name="20220120_res_CL14985_test"
 //// end general variables
 
 //// slurm variables
-fastqueue = 'hubbioit' // fast for -p option of slurm. Example: fastqueue = 'common,dedicated'. Example: fastqueue = 'hubbioit'
+fastqueue = 'common,dedicated' // fast for -p option of slurm. Example: fastqueue = 'common,dedicated'. Example: fastqueue = 'hubbioit'
 fastqos= '--qos=fast' // fast for --qos option of slurm. Example: fastqos= '--qos=fast'
-normalqueue = 'hubbioit' // normal for -p option of slurm. Example: normalqueue = 'bioevo'
+normalqueue = 'common,dedicated' // normal for -p option of slurm. Example: normalqueue = 'bioevo'
 normalqos = '--qos=hubbioit' // normal for --qos option of slurm. Example: normalqos = '--qos=dedicated'
-longqueue = 'hubbioit' // slow for -p option of slurm. Example: longqueue = 'bioevo'
+longqueue = 'common,dedicated' // slow for -p option of slurm. Example: longqueue = 'bioevo'
 longqos = '--qos=hubbioit' // slow for --qos option of slurm. Example: longqos = '--qos=dedicated'
 add_options = ' ' // additional option of slurm. Example: addoptions = '--exclude=maestro-1101,maestro-1034' or add_options = ' '
 //// end slurm variables
-- 
GitLab