tempo: for fred

main.nf

@@ -538,7 +538,7 @@ process duplicate_removal { // section 24.5 of the labbook 20200707. Warning: US
 
 process report1 {
     label 'bash'
-    cache 'false'
+    cache 'true'
 
     input:
     val file_name
@@ -847,7 +847,7 @@ base_freq_report_ch.collectFile(name: "base_freq_report.txt").subscribe{it -> it
 
 process report2 {
     label 'bash'
-    cache 'false'
+    cache 'true'
 
     input:
     val files from base_freq_stat_nodup_ch1.collect() // warning: 4 files. Collect() prevent the parallelization
@@ -920,7 +920,7 @@ process global_logo { // 24.9.3 of the labbook 20200707
 
     script:
     """
-    global_logo.R "${freq}" ${file_name} ${insertion_dist} "${cute_path}" "global_logo_report.txt"
+    global_logo.R "${freq}" "${file_name}" "${insertion_dist}" "${cute_path}" "global_logo_report.txt"
     """
     // single quotes required because of the !
 }
@@ -929,7 +929,7 @@ process global_logo { // 24.9.3 of the labbook 20200707
 
 process report3 {
     label 'bash'
-    cache 'false'
+    cache 'true'
 
     input:
     file pos from pos_nodup_ch1