Commit 2b750774 authored by Gael  MILLOT's avatar Gael MILLOT
Browse files

tempo: for fred

parent c20c104d
......@@ -538,7 +538,7 @@ process duplicate_removal { // section 24.5 of the labbook 20200707. Warning: US
process report1 {
label 'bash'
cache 'false'
cache 'true'
input:
val file_name
......@@ -847,7 +847,7 @@ base_freq_report_ch.collectFile(name: "base_freq_report.txt").subscribe{it -> it
process report2 {
label 'bash'
cache 'false'
cache 'true'
input:
val files from base_freq_stat_nodup_ch1.collect() // warning: 4 files. Collect() prevent the parallelization
......@@ -920,7 +920,7 @@ process global_logo { // 24.9.3 of the labbook 20200707
script:
"""
global_logo.R "${freq}" ${file_name} ${insertion_dist} "${cute_path}" "global_logo_report.txt"
global_logo.R "${freq}" "${file_name}" "${insertion_dist}" "${cute_path}" "global_logo_report.txt"
"""
// single quotes required because of the !
}
......@@ -929,7 +929,7 @@ process global_logo { // 24.9.3 of the labbook 20200707
process report3 {
label 'bash'
cache 'false'
cache 'true'
input:
file pos from pos_nodup_ch1
......
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