Commit cfada439 authored by Gael  MILLOT's avatar Gael MILLOT
Browse files

v7.7.0 release: Kraken added and multiQC fixed

parent 005eedc2
...@@ -146,7 +146,7 @@ Then run: ...@@ -146,7 +146,7 @@ Then run:
```bash ```bash
# distant main.nf file # distant main.nf file
HOME="$ZEUSHOME/14985_loot/" ; nextflow run --modules ${MODULES} -hub pasteur gmillot/14985_loot -r v7.0.0 ; HOME="/pasteur/appa/homes/gmillot/" HOME="$ZEUSHOME/14985_loot/" ; nextflow run --modules ${MODULES} -hub pasteur gmillot/14985_loot -r v7.6.0 ; HOME="/pasteur/appa/homes/gmillot/"
# local main.nf file ($HOME changed to allow the creation of .nextflow into /$ZEUSHOME/14985_loot/. See NFX_HOME in the nextflow soft script) # local main.nf file ($HOME changed to allow the creation of .nextflow into /$ZEUSHOME/14985_loot/. See NFX_HOME in the nextflow soft script)
HOME="$ZEUSHOME/14985_loot/" ; nextflow run --modules ${MODULES} main.nf ; HOME="/pasteur/appa/homes/gmillot/" HOME="$ZEUSHOME/14985_loot/" ; nextflow run --modules ${MODULES} main.nf ; HOME="/pasteur/appa/homes/gmillot/"
...@@ -198,6 +198,11 @@ Gitlab developers ...@@ -198,6 +198,11 @@ Gitlab developers
## WHAT'S NEW IN ## WHAT'S NEW IN
### v7.7.0
1) Kraken added and multiQC fixed
### v7.6.0 ### v7.6.0
1) Everything's fine, except the multiQC 1) Everything's fine, except the multiQC
......
task_id hash native_id name status exit submit duration realtime %cpu peak_rss peak_vmem rchar wchar
2 d9/630746 7684 Nremove (1) CACHED 0 2022-02-16 20:35:30.818 1.8s 424ms 52.5% 12.2 MB 70.6 MB 16.8 MB 14.5 MB
4 b3/1c2ef7 8608 trim (1) CACHED 0 2022-02-16 20:35:32.710 2.8s 1.9s 48.3% 42.6 MB 5.6 GB 16.4 MB 12 MB
6 18/0f169c 13823 fivep_filtering (1) CACHED 0 2022-02-17 14:36:41.956 3.4s 1.9s 22.7% 9.5 MB 61.4 MB 26 MB 14.3 MB
5 96/df49e5 9178 fastqc1 (1) CACHED 0 2022-02-16 20:35:35.529 5.7s 4.8s 85.2% 183.9 MB 3.1 GB 13.7 MB 1.2 MB
9 2b/ed3a2a 14926 cutoff (1) CACHED 0 2022-02-17 14:36:46.438 1.6s 607ms 19.8% 9.6 MB 61.3 MB 7 MB 3.9 MB
8 b0/42cb74 17030 plot_read_length_fivep_filtering (1) CACHED 0 2022-02-17 14:37:13.806 12.5s 11.4s 69.6% 233.2 MB 2.4 GB 19.1 MB 384.1 KB
11 15/e3b952 12600 plot_fivep_filtering_stat (1) CACHED 0 2022-02-16 20:36:10.915 12.2s 11.5s 75.1% 243.3 MB 2.4 GB 19.1 MB 816.6 KB
10 d5/2de795 18246 plot_read_length_ini (1) CACHED 0 2022-02-17 14:37:26.306 11.8s 11.1s 72.2% 233.4 MB 2.4 GB 19.1 MB 387.9 KB
12 33/aa8574 24116 plot_read_length_cutoff (1) CACHED 0 2022-02-17 14:40:57.228 12.1s 11.3s 70.1% 231.4 MB 2.4 GB 19.1 MB 376.7 KB
13 69/7168f4 24843 bowtie2 (1) CACHED 0 2022-02-17 14:41:09.287 4s 3.2s 60.9% 111.8 MB 239.5 MB 35 MB 16.2 MB
7 0f/b81485 14947 fastqc2 (1) CACHED 0 2022-02-17 14:36:46.456 5.6s 4.8s 76.4% 178 MB 3.1 GB 12 MB 1.2 MB
18 68/f70403 25264 Q20 (1) CACHED 0 2022-02-17 14:41:13.366 1.4s 327ms 21.7% 5.8 MB 42.8 MB 3.2 MB 2.2 MB
17 c1/24d1cb 25236 coverage (1) CACHED 0 2022-02-17 14:41:13.342 1.9s 728ms 18.8% 5 MB 44.6 MB 479.7 KB 91 KB
20 a1/ab5068 25680 no_soft_clipping (1) CACHED 0 2022-02-17 14:41:14.827 1.5s 274ms 14.5% 3.5 MB 38.4 MB 2.1 MB 1.5 MB
22 8e/8c39fc 25863 coverage (2) CACHED 0 2022-02-17 14:41:15.208 1.7s 686ms 16.8% 5.1 MB 44.6 MB 335.1 KB 82.4 KB
23 ad/de823c 26426 plot_coverage (1) CACHED 0 2022-02-17 14:41:16.956 12.6s 11.8s 70.7% 241.8 MB 2.4 GB 19.1 MB 464.3 KB
21 3a/566af1 25706 duplicate_removal (1) CACHED 0 2022-02-17 14:41:14.851 2.9s 1.7s 26.1% 10.4 MB 68.1 MB 12.9 MB 6.6 MB
24 e0/5349ee 27505 plot_coverage (2) CACHED 0 2022-02-17 14:41:29.547 12.2s 11.5s 72.0% 248.7 MB 2.4 GB 19.1 MB 455.9 KB
26 aa/521edd 26735 insertion (1) CACHED 0 2022-02-17 14:41:18.765 1.3s 437ms 22.2% 9.1 MB 65.7 MB 2.5 MB 1.7 MB
25 44/f43ca7 28226 coverage (3) CACHED 0 2022-02-17 14:41:41.776 1.4s 556ms 19.0% 5.1 MB 44.6 MB 310.3 KB 82.1 KB
28 2d/74a6a2 28379 seq_around_insertion (1) CACHED 0 2022-02-17 14:41:43.165 6.2s 5.5s 72.8% 156.3 MB 2.3 GB 17.9 MB 229.4 KB
27 bd/2be631 28830 final_insertion_files (1) CACHED 0 2022-02-17 14:41:49.355 6.3s 5.6s 72.2% 159.7 MB 2.3 GB 18 MB 266 KB
29 fe/2ad1c2 29282 plot_coverage (3) CACHED 0 2022-02-17 14:41:55.645 12.5s 11.7s 71.6% 263.5 MB 2.4 GB 19.1 MB 459.1 KB
30 95/5c3641 30005 extract_seq (1) CACHED 0 2022-02-17 14:42:08.124 1.7s 805ms 20.3% 5.8 MB 50.2 MB 9.1 MB 4.5 MB
31 15/73b0fa 30224 base_freq (2) CACHED 0 2022-02-17 14:42:09.881 1.4s 98ms 12.3% 0 0 281.7 KB 18.9 KB
33 25/ce933f 30254 base_freq (4) CACHED 0 2022-02-17 14:42:09.897 1.7s 89ms 9.4% 0 0 281.9 KB 19 KB
32 da/9b485c 30341 base_freq (3) CACHED 0 2022-02-17 14:42:09.935 1.7s 92ms 11.3% 0 0 282.5 KB 19.7 KB
34 d8/137e70 30301 base_freq (1) CACHED 0 2022-02-17 14:42:09.915 1.5s 87ms 14.9% 0 0 279.6 KB 16.8 KB
39 b3/389d31 1073 global_logo CACHED 0 2022-02-17 14:42:49.105 7.5s 6.8s 74.2% 202.8 MB 2.4 GB 14.6 MB 850.3 KB
36 a3/f197a4 32028 logo (2) CACHED 0 2022-02-17 14:42:27.726 7.2s 6.5s 73.5% 206.4 MB 2.4 GB 14.6 MB 1002.2 KB
38 61/960392 32534 logo (3) CACHED 0 2022-02-17 14:42:34.924 7.1s 6.4s 72.7% 203.6 MB 2.4 GB 14.6 MB 882.6 KB
37 ab/988fed 569 logo (4) CACHED 0 2022-02-17 14:42:42.065 7s 6.3s 73.6% 202.2 MB 2.4 GB 14.6 MB 873.7 KB
35 81/d19fa7 31517 logo (1) CACHED 0 2022-02-17 14:42:20.555 7.2s 6.5s 72.8% 203.5 MB 2.4 GB 14.6 MB 852.9 KB
1 94/1749aa 18166 init COMPLETED 0 2022-02-17 15:44:34.526 1.7s 14ms 8.1% 0 0 104.2 KB 673 B
3 92/6c8320 18185 report1 COMPLETED 0 2022-02-17 15:44:34.568 1.7s 22ms 5.3% 0 0 104.5 KB 687 B
15 68/5cb5a7 18300 backup COMPLETED 0 2022-02-17 15:44:34.739 1.8s 14ms 5.1% 0 0 104.4 KB 522 B
40 2d/c6de43 18543 report2 COMPLETED 0 2022-02-17 15:44:35.058 1.6s 34ms 7.7% 0 0 130.9 KB 1.3 KB
16 13/0f76a4 18334 workflowVersion COMPLETED 0 2022-02-17 15:44:34.780 2.4s 690ms 12.2% 3.2 MB 19.2 MB 135.3 KB 1.7 KB
19 eb/621cc4 18381 multiQC FAILED 1 2022-02-17 15:44:34.837 3.2s 3.1s - - - - -
14 58/5a238e 18288 motif COMPLETED 0 2022-02-17 15:44:34.698 15.9s 14.7s 63.1% 217.9 MB 2.4 GB 48.3 MB 39.7 MB
41 51/d8ad3f 19903 random_insertion (1) COMPLETED 0 2022-02-17 15:44:50.654 10.4s 9.7s 70.7% 387.2 MB 2.7 GB 30.7 MB 1.2 MB
42 fe/4bc2ef 20574 plot_insertion (1) COMPLETED 0 2022-02-17 15:45:01.154 34.2s 33.5s 77.2% 999.3 MB 3.2 GB 40.3 MB 9.7 MB
43 2b/e700a5 21541 print_report (1) COMPLETED 0 2022-02-17 15:45:35.629 10.1s 9.4s 56.7% 286.9 MB 1 TB 29.8 MB 10.3 MB
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