From 1b94433e6d691150068f84e8d1a2fdde91bc0fd6 Mon Sep 17 00:00:00 2001
From: Gael <Gael@WL20-0067.corp.pasteur.fr>
Date: Sat, 26 Jun 2021 12:05:02 +0200
Subject: [PATCH] v18.0.0 release
---
README.md | 6 ++++++
...{20210603_critical_pos.txt => 20210626_critical_pos.txt} | 1 +
2 files changed, 7 insertions(+)
rename dataset/{20210603_critical_pos.txt => 20210626_critical_pos.txt} (93%)
diff --git a/README.md b/README.md
index b893b21e..1b2d6e62 100644
--- a/README.md
+++ b/README.md
@@ -199,10 +199,16 @@ Hub-CDB and Institut Pasteur
<br /><br />
## WHAT'S NEW IN
+### v18.0.0
+
+1) S:K417N position added as critical because of https://www.reuters.com/business/healthcare-pharmaceuticals/what-is-delta-variant-coronavirus-with-k417n-mutation-2021-06-23/
+
+
### v17.0.0
1) scan() improved to be adapted to any header of fasta file
+
### v16.0.0
1) New critical_pos.txt file format
diff --git a/dataset/20210603_critical_pos.txt b/dataset/20210626_critical_pos.txt
similarity index 93%
rename from dataset/20210603_critical_pos.txt
rename to dataset/20210626_critical_pos.txt
index eb5ab448..96053f2e 100644
--- a/dataset/20210603_critical_pos.txt
+++ b/dataset/20210626_critical_pos.txt
@@ -1,6 +1,7 @@
# GATK positions for the deletions
chr begin_pos end_pos codon_ref orf name ini_concern_name
MN908947_Ampliseq 21563 21565 ACA S S:T19 S:T19R
+MN908947_Ampliseq 22757 22759 AAG S S:K417 S:K417N
MN908947_Ampliseq 22826 22828 AAT S S:N440 S:N440K
MN908947_Ampliseq 22862 22864 CTG S S:L452 S:L452R
MN908947_Ampliseq 22937 22939 AGC S S:S477 S:S477N
--
GitLab