diff --git a/cute_little_R_functions.R b/cute_little_R_functions.R index 5c6feacf4e138e4fff987b71c48966e4b02acd75..1c3b74351060b8b8ed6d0414048e8a4f5a6502d0 100644 --- a/cute_little_R_functions.R +++ b/cute_little_R_functions.R @@ -5142,9 +5142,9 @@ abline(v = qnorm(trim.cutoffs.f, mean(data.f, na.rm = TRUE), sd(data.f, na.rm = segments(qnorm(trim.cutoffs.f[1], mean(data.f, na.rm = TRUE), sd(data.f, na.rm = TRUE)), par()$usr[4] * 0.75, qnorm(trim.cutoffs.f[2], mean(data.f, na.rm = TRUE), sd(data.f, na.rm = TRUE)), par()$usr[4] * 0.75, col = color.cut.f) } if(trim.method.f == "quantile"){ -real.trim.cutoffs.f <- quantile(data.f, probs = trim.cutoffs.f, type = 7) -abline(v = quantile(data.f, probs = trim.cutoffs.f, type = 7), col = color.cut.f) -segments(quantile(data.f, probs = trim.cutoffs.f[1], type = 7), par()$usr[4] * 0.75, quantile(data.f, probs = trim.cutoffs.f[2], type = 7), par()$usr[4] * 0.75, col = color.cut.f) +real.trim.cutoffs.f <- quantile(data.f, probs = trim.cutoffs.f, type = 7, na.rm = TRUE) +abline(v = quantile(data.f, probs = trim.cutoffs.f, type = 7, na.rm = TRUE), col = color.cut.f) +segments(quantile(data.f, probs = trim.cutoffs.f[1], type = 7, na.rm = TRUE), par()$usr[4] * 0.75, quantile(data.f, probs = trim.cutoffs.f[2], type = 7, na.rm = TRUE), par()$usr[4] * 0.75, col = color.cut.f) } par(par.ini) if(return.f == TRUE){ @@ -5166,7 +5166,7 @@ par.ini <- par()[c("mgp", "xpd")] par(mgp = c(0.25, 0.25, 0), xpd = NA) axis(side = 3, at = c(par()$usr[1], par()$usr[2]), labels = rep("", 2), col = col.quantile.f, lwd.ticks = 0) par(xpd = FALSE) -axis(side = 3, at = quantile(as.vector(data.f), probs = quantiles.selection.f, type = 7), labels = quantiles.selection.f, col.axis = col.quantile.f, col = col.quantile.f) +axis(side = 3, at = quantile(as.vector(data.f), probs = quantiles.selection.f, type = 7, na.rm = TRUE), labels = quantiles.selection.f, col.axis = col.quantile.f, col = col.quantile.f) par(mgp = c(1.75, 1.75, 1.5), xpd = NA) axis(side = 3, at = c(par()$usr[1], par()$usr[2]), labels = rep("", 2), col = col.mean.f, lwd.ticks = 0) par(xpd = FALSE) @@ -6979,18 +6979,6 @@ return(output) # do not use cat() because the idea is to reuse the message - - - - - - - - - - - - # add legend width from scatter. Ok with facet? # transfert the 2nd tick part to scatter # improve grid -> put secondary grids. Then trasfert to scatter @@ -8771,17 +8759,6 @@ return(tempo <- output) - - - - - - - - - - - # add return.ggplot = FALSE, from boxplot # add facet from boxplot if data1 is a dataframe or list of length 1 # error to fix: 1) accept integers as color, 2) fun_scale but xhuld be ok when importing the job from boxplot @@ -10185,10 +10162,3 @@ return(output) - - - - - - - diff --git a/cute_little_R_functions.docx b/cute_little_R_functions.docx index 63a71c70ec7857df8f4f6d35e07ec685e8e799fb..3fa5b7b9c6006683a90c6653afab54ee43fe187c 100644 Binary files a/cute_little_R_functions.docx and b/cute_little_R_functions.docx differ