diff --git a/README.md b/README.md index 35370a3d64a25cb514c34be136d31995d521fc2f..e862446ffa08ae38a7d130763af55e55ece41183 100644 --- a/README.md +++ b/README.md @@ -71,6 +71,11 @@ Hub-CDB Institut Pasteur & DSI Institut Pasteur Use the gitlab tag of the docker image (e.g., gitlab_v5.0) to get the description of the modifications below +### 9.5 + +ubuntu\v20.04\alohomora_merlin\v2.1 at date 20230122 : problem of locales solved + + ### 9.4 Dockerfiles added: <br /> ubuntu\v20.04\alohomora_merlin\v2.0 at date 20221231 diff --git a/ubuntu/v20.04/alohomora_merlin/v2.1/Dockerfile b/ubuntu/v20.04/alohomora_merlin/v2.1/Dockerfile new file mode 100644 index 0000000000000000000000000000000000000000..69f61c16ba2def5989e6e592125fca1016218dd5 --- /dev/null +++ b/ubuntu/v20.04/alohomora_merlin/v2.1/Dockerfile @@ -0,0 +1,121 @@ +######################################################################### +## ## +## Dockerfile ## +## Alohomora and Merlin ## +## ## +## Eric Deveaud ## +## HPC Core Facility ## +## Institut Pasteur Paris ## +## ## +## Gael A. Millot ## +## Bioinformatics and Biostatistics Hub ## +## Computational Biology Department ## +## Institut Pasteur Paris ## +## ## +######################################################################### + + + +# to see the log of the building: +# sudo docker run -ti --entrypoint bash <IMAGE_NAME> +# cat building.log + +# to export the log file of the image building from the container: +# sudo docker images +# sudo docker run -ti --entrypoint bash <IMAGE_NAME> +# exit +# sudo docker container ls -a # to get all the active containers +# sudo docker cp <containerNAMES>:/building.log </host/path/target> + + +# base image: ubuntu:20.04 +FROM ubuntu:20.04 +# Warning: the name must be exactly what is written in the docker images interface, or sudo docker image ls. But here, since the image is not present locally, docker will search it on docker hub. Thus, gmillot/ubuntu:16.04 iw not correct + +LABEL Gael.Millot=gael.millot@pasteur.fr +LABEL gitlab.dockerfiles="https://gitlab.pasteur.fr/gmillot/dockerfiles" + + +# add gensoft deb repo pgp public key to apt trusted ones +# and install modules +WORKDIR /etc/apt/trusted.gpg.d/ +# to avoid cd. All the following commands will occurs here. In addition, opening a container will be at this node. + + +# update apt-get +RUN echo "\n\n\n\n================\n\napt-get update\n\n================\n\n\n\n" > /building.log \ + && apt-get update --fix-missing \ + | tee -a /building.log \ + # install the ubuntu packages + && echo "\n\n\n\n================\n\napt-get install\n\n================\n\n\n\n" >> /building.log \ + && DEBIAN_FRONTEND="noninteractive" apt-get install -y \ + wget \ + build-essential \ + | tee -a /building.log + + +RUN apt-get install -y locales \ + | tee -a /building.log + +# Set the locale +RUN sed -i '/en_US.UTF-8/s/^# //g' /etc/locale.gen \ + && locale-gen \ + | tee -a /building.log + +ENV LC_ALL en_US.UTF-8 +ENV LANG en_US.UTF-8 +ENV LANGUAGE en_US.UTF-8 +ENV LC_NUMERIC en_US.UTF-8 + +RUN echo "\n\n\n\n================\n\nalohomora preinstall\n\n================\n\n\n\n" >> /building.log \ + && wget http://mirrors.web.pasteur.fr/gensoft/ubuntu/deb/public.pgp \ + | tee -a /building.log \ + && echo "deb http://mirrors.web.pasteur.fr/gensoft/ubuntu/deb/ /" >> /etc/apt/sources.list.d/gensoft.list | tee -a /building.log \ + && echo "deb http://mirrors.web.pasteur.fr/gensoft/ubuntu/deb_private/ /" >> /etc/apt/sources.list.d/gensoft.list | tee -a /building.log \ + && apt-key add public.pgp +# define where the debian repo are. The reason why that must be done before any update and install. +# public.pgp: key to allow install of the gensoft packages (debian repo are always signed) +# deb in /etc/apt/sources.list.d/gensoft.list indicates the url where debian packages are +# apt-key add public.pgp : install the key + + +# COPY gensoft.repo.ubuntu /etc/apt/sources.list.d/gensoft.list +# COPY gpg_key.ubuntu /tmp +# COPY instruction copies the file from the host into the docker image. + + +RUN echo "\n\n\n\n================\n\nsoft installation\n\n================\n\n\n\n" >> /building.log \ + && apt-get update \ + && DEBIAN_FRONTEND="noninteractive" apt-get install -y \ + gensoft-modules-4.4.0 \ + gensoft-alohomora-v0.36 \ + gensoft-R-3.6.2 \ + && apt-get clean \ + # cleaning + && echo "\n\n\n\n================\n\napt-get autoremove\n\n================\n\n\n\n" >> /building.log \ + && apt-get autoremove -y \ + | tee -a /building.log ; echo "\n\n\n\n================\n\napt-get clean\n\n================\n\n\n\n" >> /building.log \ + && apt-get clean \ + | tee -a /building.log ; echo "\n\n\n\n================\n\nrm\n\n================\n\n\n\n" >> /building.log \ + && rm -rf /var/lib/apt/lists/* \ + | tee -a /building.log \ + && echo "\n\n\n\n================\n\ninstalled packages\n\n================\n\n\n\n" >> /building.log \ + && apt-cache policy \ + locales \ + locales-all \ + >> /building.log +# https://askubuntu.com/questions/179955/var-lib-apt-lists-is-huge +# folder filled after running sudo apt-get update (or use the Refresh button in a package manager), a list of packages will get downloaded from the Ubuntu servers. These files are then stored in /var/lib/apt/lists/. You can safely remove the contents of that directory as it is recreated when you refresh the package lists. If you remove the files, but do not run apt-get update to fetch the lists, commands like apt-cache will fail to provide information (since the cache is empty) +# apt-cache policy print all the indicated package info +# end cleaning + + +# RUN echo ". /opt/gensoft/adm/etc/profile.d/modules.sh" > /etc/profile.d/pasteur_modules.sh +# to have the modules already active when the container is activated +# . /opt/gensoft/adm/etc/profile.d/modules.sh source the file module.sh +# Then echo of this print that into /etc/profile.d/pasteur_modules.sh +# During container boot, this is read in order to initialize modules env. + + +ENTRYPOINT ["/usr/bin/bash" , "-l"] +# The -l option (according to the man page) makes "bash act as if it had been invoked as a login shell". Login shells read certain initialization files from your home directory, such as .bash_profile. Variables set in .bash_profile override when bash launches. \ No newline at end of file diff --git a/ubuntu/v20.04/alohomora_merlin/v2.1/building.log b/ubuntu/v20.04/alohomora_merlin/v2.1/building.log new file mode 100644 index 0000000000000000000000000000000000000000..d34c5a32361dfad5da466ee450d6bdd83e5ba49b --- /dev/null +++ b/ubuntu/v20.04/alohomora_merlin/v2.1/building.log @@ -0,0 +1,687 @@ + + + + +================ + +apt-get update + +================ + + + + +Get:1 http://archive.ubuntu.com/ubuntu focal InRelease [265 kB] +Get:2 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB] +Get:3 http://archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] +Get:4 http://archive.ubuntu.com/ubuntu focal-backports InRelease [108 kB] +Get:5 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [1879 kB] +Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 Packages [1275 kB] +Get:7 http://archive.ubuntu.com/ubuntu focal/restricted amd64 Packages [33.4 kB] +Get:8 http://archive.ubuntu.com/ubuntu focal/multiverse amd64 Packages [177 kB] +Get:9 http://archive.ubuntu.com/ubuntu focal/universe amd64 Packages [11.3 MB] +Get:10 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [982 kB] +Get:11 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [2436 kB] +Get:12 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [27.7 kB] +Get:13 http://archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [2003 kB] +Get:14 http://archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [31.2 kB] +Get:15 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [2909 kB] +Get:16 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [1284 kB] +Get:17 http://archive.ubuntu.com/ubuntu focal-backports/universe amd64 Packages [28.6 kB] +Get:18 http://archive.ubuntu.com/ubuntu focal-backports/main amd64 Packages [55.2 kB] +Fetched 25.1 MB in 14s (1789 kB/s) +Reading package lists... + + + + +================ + +apt-get install + +================ + + + + +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-9 + dirmngr dpkg-dev fakeroot g++ g++-9 gcc gcc-9 gcc-9-base gnupg gnupg-l10n + gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm + libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl + libasan5 libasn1-8-heimdal libassuan0 libatomic1 libbinutils libc-dev-bin + libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libdpkg-perl + libfakeroot libfile-fcntllock-perl libgcc-9-dev libgdbm-compat4 libgdbm6 + libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal + libheimntlm0-heimdal libhx509-5-heimdal libisl22 libitm1 libkrb5-26-heimdal + libksba8 libldap-2.4-2 libldap-common liblocale-gettext-perl liblsan0 + libmpc3 libmpfr6 libnpth0 libperl5.30 libpsl5 libquadmath0 libreadline8 + libroken18-heimdal libsasl2-2 libsasl2-modules libsasl2-modules-db + libsqlite3-0 libssl1.1 libstdc++-9-dev libtsan0 libubsan1 libwind0-heimdal + linux-libc-dev make manpages manpages-dev netbase openssl patch perl + perl-modules-5.30 pinentry-curses publicsuffix readline-common xz-utils +Suggested packages: + binutils-doc cpp-doc gcc-9-locales dbus-user-session libpam-systemd + pinentry-gnome3 tor debian-keyring g++-multilib g++-9-multilib gcc-9-doc + gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-9-multilib + parcimonie xloadimage scdaemon glibc-doc git bzr gdbm-l10n + libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal + libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql + libstdc++-9-doc make-doc man-browser ed diffutils-doc perl-doc + libterm-readline-gnu-perl | libterm-readline-perl-perl libb-debug-perl + liblocale-codes-perl pinentry-doc readline-doc +The following NEW packages will be installed: + binutils binutils-common binutils-x86-64-linux-gnu build-essential + ca-certificates cpp cpp-9 dirmngr dpkg-dev fakeroot g++ g++-9 gcc gcc-9 + gcc-9-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client + gpg-wks-server gpgconf gpgsm libalgorithm-diff-perl + libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan5 libasn1-8-heimdal + libassuan0 libatomic1 libbinutils libc-dev-bin libc6-dev libcc1-0 + libcrypt-dev libctf-nobfd0 libctf0 libdpkg-perl libfakeroot + libfile-fcntllock-perl libgcc-9-dev libgdbm-compat4 libgdbm6 libgomp1 + libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal + libheimntlm0-heimdal libhx509-5-heimdal libisl22 libitm1 libkrb5-26-heimdal + libksba8 libldap-2.4-2 libldap-common liblocale-gettext-perl liblsan0 + libmpc3 libmpfr6 libnpth0 libperl5.30 libpsl5 libquadmath0 libreadline8 + libroken18-heimdal libsasl2-2 libsasl2-modules libsasl2-modules-db + libsqlite3-0 libssl1.1 libstdc++-9-dev libtsan0 libubsan1 libwind0-heimdal + linux-libc-dev make manpages manpages-dev netbase openssl patch perl + perl-modules-5.30 pinentry-curses publicsuffix readline-common wget xz-utils +0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. +Need to get 61.1 MB of archives. +After this operation, 273 MB of additional disk space will be used. +Get:1 http://archive.ubuntu.com/ubuntu focal/main amd64 liblocale-gettext-perl amd64 1.07-4 [17.1 kB] +Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 perl-modules-5.30 all 5.30.0-9ubuntu0.3 [2739 kB] +Get:3 http://archive.ubuntu.com/ubuntu focal/main amd64 libgdbm6 amd64 1.18.1-5 [27.4 kB] +Get:4 http://archive.ubuntu.com/ubuntu focal/main amd64 libgdbm-compat4 amd64 1.18.1-5 [6244 B] +Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libperl5.30 amd64 5.30.0-9ubuntu0.3 [3951 kB] +Get:6 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 perl amd64 5.30.0-9ubuntu0.3 [224 kB] +Get:7 http://archive.ubuntu.com/ubuntu 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fakeroot) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/es/man1/faked.1.gz because associated file /usr/share/man/es/man1/faked-sysv.1.gz (of link group fakeroot) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/fr/man1/fakeroot.1.gz because associated file /usr/share/man/fr/man1/fakeroot-sysv.1.gz (of link group fakeroot) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/fr/man1/faked.1.gz because associated file /usr/share/man/fr/man1/faked-sysv.1.gz (of link group fakeroot) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/sv/man1/fakeroot.1.gz because associated file /usr/share/man/sv/man1/fakeroot-sysv.1.gz (of link group fakeroot) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/sv/man1/faked.1.gz because associated file /usr/share/man/sv/man1/faked-sysv.1.gz (of link group fakeroot) doesn't exist +Setting up make (4.2.1-1.2) ... +Setting up libmpfr6:amd64 (4.0.2-1) ... +Setting up gnupg-l10n (2.2.19-3ubuntu2.2) ... +Setting up xz-utils (5.2.4-1ubuntu1.1) ... +update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode +update-alternatives: warning: skip creation of /usr/share/man/man1/lzma.1.gz because associated file /usr/share/man/man1/xz.1.gz (of link group lzma) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/man1/unlzma.1.gz because associated file /usr/share/man/man1/unxz.1.gz (of link group lzma) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/man1/lzcat.1.gz because associated file /usr/share/man/man1/xzcat.1.gz (of link group lzma) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/man1/lzmore.1.gz because associated file /usr/share/man/man1/xzmore.1.gz (of link group lzma) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/man1/lzless.1.gz because associated file /usr/share/man/man1/xzless.1.gz (of link group lzma) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/man1/lzdiff.1.gz because associated file /usr/share/man/man1/xzdiff.1.gz (of link group lzma) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/man1/lzcmp.1.gz because associated file /usr/share/man/man1/xzcmp.1.gz (of link group lzma) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/man1/lzgrep.1.gz because associated file /usr/share/man/man1/xzgrep.1.gz (of link group lzma) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/man1/lzegrep.1.gz because associated file /usr/share/man/man1/xzegrep.1.gz (of link group lzma) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/man1/lzfgrep.1.gz because associated file /usr/share/man/man1/xzfgrep.1.gz (of link group lzma) doesn't exist +Setting up libquadmath0:amd64 (10.3.0-1ubuntu1~20.04) ... +Setting up libmpc3:amd64 (1.1.0-1) ... +Setting up libatomic1:amd64 (10.3.0-1ubuntu1~20.04) ... +Setting up patch (2.7.6-6) ... +Setting up libsasl2-2:amd64 (2.1.27+dfsg-2ubuntu0.1) ... +Setting up libroken18-heimdal:amd64 (7.7.0+dfsg-1ubuntu1.3) ... +Setting up libubsan1:amd64 (10.3.0-1ubuntu1~20.04) ... +Setting up libcrypt-dev:amd64 (1:4.4.10-10ubuntu4) ... +Setting up libisl22:amd64 (0.22.1-1) ... +Setting up netbase (6.1) ... +Setting up libbinutils:amd64 (2.34-6ubuntu1.4) ... +Setting up libc-dev-bin (2.31-0ubuntu9.9) ... +Setting up openssl (1.1.1f-1ubuntu2.16) ... +Setting up readline-common (8.0-4) ... +Setting up publicsuffix (20200303.0012-1) ... +Setting up libcc1-0:amd64 (10.3.0-1ubuntu1~20.04) ... +Setting up liblocale-gettext-perl (1.07-4) ... +Setting up liblsan0:amd64 (10.3.0-1ubuntu1~20.04) ... +Setting up libitm1:amd64 (10.3.0-1ubuntu1~20.04) ... +Setting up libheimbase1-heimdal:amd64 (7.7.0+dfsg-1ubuntu1.3) ... +Setting up libgdbm6:amd64 (1.18.1-5) ... +Setting up gcc-9-base:amd64 (9.4.0-1ubuntu1~20.04.1) ... +Setting up libtsan0:amd64 (10.3.0-1ubuntu1~20.04) ... +Setting up libctf0:amd64 (2.34-6ubuntu1.4) ... +Setting up pinentry-curses (1.1.0-3build1) ... +Setting up manpages-dev (5.05-1) ... +Setting up wget (1.20.3-1ubuntu2) ... +Setting up libasn1-8-heimdal:amd64 (7.7.0+dfsg-1ubuntu1.3) ... +Setting up libreadline8:amd64 (8.0-4) ... +Setting up libhcrypto4-heimdal:amd64 (7.7.0+dfsg-1ubuntu1.3) ... +Setting up ca-certificates (20211016ubuntu0.20.04.1) ... +Updating certificates in /etc/ssl/certs... +124 added, 0 removed; done. +Setting up libasan5:amd64 (9.4.0-1ubuntu1~20.04.1) ... +Setting up libwind0-heimdal:amd64 (7.7.0+dfsg-1ubuntu1.3) ... +Setting up libgdbm-compat4:amd64 (1.18.1-5) ... +Setting up gpgconf (2.2.19-3ubuntu2.2) ... +Setting up cpp-9 (9.4.0-1ubuntu1~20.04.1) ... +Setting up libperl5.30:amd64 (5.30.0-9ubuntu0.3) ... +Setting up libc6-dev:amd64 (2.31-0ubuntu9.9) ... +Setting up gpg (2.2.19-3ubuntu2.2) ... +Setting up gnupg-utils (2.2.19-3ubuntu2.2) ... +Setting up binutils-x86-64-linux-gnu (2.34-6ubuntu1.4) ... +Setting up gpg-agent (2.2.19-3ubuntu2.2) ... +Setting up libhx509-5-heimdal:amd64 (7.7.0+dfsg-1ubuntu1.3) ... +Setting up gpgsm (2.2.19-3ubuntu2.2) ... +Setting up binutils (2.34-6ubuntu1.4) ... +Setting up libgcc-9-dev:amd64 (9.4.0-1ubuntu1~20.04.1) ... +Setting up perl (5.30.0-9ubuntu0.3) ... +Setting up libdpkg-perl (1.19.7ubuntu3.2) ... +Setting up gpg-wks-server (2.2.19-3ubuntu2.2) ... +Setting up cpp (4:9.3.0-1ubuntu2) ... +Setting up libkrb5-26-heimdal:amd64 (7.7.0+dfsg-1ubuntu1.3) ... +Setting up gcc-9 (9.4.0-1ubuntu1~20.04.1) ... +Setting up libstdc++-9-dev:amd64 (9.4.0-1ubuntu1~20.04.1) ... +Setting up libfile-fcntllock-perl (0.22-3build4) ... +Setting up libalgorithm-diff-perl (1.19.03-2) ... +Setting up libheimntlm0-heimdal:amd64 (7.7.0+dfsg-1ubuntu1.3) ... +Setting up gcc (4:9.3.0-1ubuntu2) ... +Setting up dpkg-dev (1.19.7ubuntu3.2) ... +Setting up libgssapi3-heimdal:amd64 (7.7.0+dfsg-1ubuntu1.3) ... +Setting up g++-9 (9.4.0-1ubuntu1~20.04.1) ... +Setting up g++ (4:9.3.0-1ubuntu2) ... +update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode +update-alternatives: warning: skip creation of /usr/share/man/man1/c++.1.gz because associated file /usr/share/man/man1/g++.1.gz (of link group c++) doesn't exist +Setting up build-essential (12.8ubuntu1.1) ... +Setting up libalgorithm-diff-xs-perl (0.04-6) ... +Setting up libalgorithm-merge-perl (0.08-3) ... +Setting up libldap-2.4-2:amd64 (2.4.49+dfsg-2ubuntu1.9) ... +Setting up dirmngr (2.2.19-3ubuntu2.2) ... +Setting up gpg-wks-client (2.2.19-3ubuntu2.2) ... +Setting up gnupg (2.2.19-3ubuntu2.2) ... +Processing triggers for libc-bin (2.31-0ubuntu9.9) ... +Processing triggers for ca-certificates (20211016ubuntu0.20.04.1) ... +Updating certificates in /etc/ssl/certs... +0 added, 0 removed; done. +Running hooks in /etc/ca-certificates/update.d... +done. +Reading package lists... +Building dependency tree... +Reading state information... +The following NEW packages will be installed: + locales +0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. +Need to get 3869 kB of archives. +After this operation, 17.6 MB of additional disk space will be used. +Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 locales all 2.31-0ubuntu9.9 [3869 kB] +Fetched 3869 kB in 3s (1462 kB/s) +Selecting previously unselected package locales. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12742 files and directories currently installed.) +Preparing to unpack .../locales_2.31-0ubuntu9.9_all.deb ... +Unpacking locales (2.31-0ubuntu9.9) ... +Setting up locales (2.31-0ubuntu9.9) ... +debconf: unable to initialize frontend: Dialog +debconf: (TERM is not set, so the dialog frontend is not usable.) +debconf: falling back to frontend: Readline +Generating locales (this might take a while)... +Generation complete. +Generating locales (this might take a while)... + en_US.UTF-8... done +Generation complete. + + + + +================ + +alohomora preinstall + +================ + + + + + + + + +================ + +soft installation + +================ + + + + + + + + +================ + +apt-get autoremove + +================ + + + + +Reading package lists... +Building dependency tree... +Reading state information... +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. + + + + +================ + +apt-get clean + +================ + + + + + + + + +================ + +rm + +================ + + + + + + + + +================ + +installed packages + +================ + + + + +locales: + Installed: 2.31-0ubuntu9.9 + Candidate: 2.31-0ubuntu9.9 + Version table: + *** 2.31-0ubuntu9.9 100 + 100 /var/lib/dpkg/status +locales-all: + Installed: (none) + Candidate: (none) + Version table: diff --git a/ubuntu/v20.04/alohomora_merlin/v2.1/installed_modules.txt b/ubuntu/v20.04/alohomora_merlin/v2.1/installed_modules.txt new file mode 100644 index 0000000000000000000000000000000000000000..23aed53586a88045498d973dc7800907d0e2592a --- /dev/null +++ b/ubuntu/v20.04/alohomora_merlin/v2.1/installed_modules.txt @@ -0,0 +1,11 @@ +root@002adb98c5a2:/etc/apt/trusted.gpg.d# module avail +----------------------------------------------------------------------------------------------- /opt/gensoft/adm/Modules/4.4.0/modulefiles ------------------------------------------------------------------------------------------------ +use.own + +---------------------------------------------------------------------------------------------------------- /opt/gensoft/modules ----------------------------------------------------------------------------------------------------------- +alohomora/v0.36(default) genehunter/2.1_r2(default) merlin/1.1.2(default) pedcheck/1.1(default) pedstats/0.6.12(default) plink/1.90b6.16(default) simwalk2/2.91(default) + +--------------------------------------------------------------------------------------------------------- /opt/gensoft/devmodules --------------------------------------------------------------------------------------------------------- +atk/2.9.4 curl/7.68.0 fontconfig/2.13.91 gcc/9.2.0(default) glib/2.58.3 gtk+/2.24.32 lapack/3.9.0 libffi/3.3 libpng/1.6.37 pango/1.42.4 pixman/0.38.4 tcl/8.6.10 xorg-libs/1.1 +atlas/3.10.2 db/18.1.32 freeglut/3.2.1 gdbm/1.18.1 glu/9.0.1 harfbuzz/2.6.4 libcerf/1.13 libgd-gd/2.2.5 libtiff/4.1.0 pcre/8.43 R/3.6.2 tk/8.6.10 xz/5.2.4 +cairo/1.16.0 expat/2.2.9 freetype/2.10.1 gdk-pixbuf/2.36.12 gnuplot/5.2.8 help2man/1.47.12 libdrm/2.4.100 libjpeg-turbo/2.0.4 mesa/19.0.8 pcre2/10.34 SQLite/3.31.0 wxWidgets/3.1.3 zlib/1.2.11