diff --git a/README.md b/README.md index 0dcf6976f70f7504e3181a5c8820b5ce1a82c98c..8a721c5d20510bab920459afaf2c6d38a4ba7474 100644 --- a/README.md +++ b/README.md @@ -72,6 +72,12 @@ Special acknowledgement to:<br /> Use the gitlab tag of the docker image (e.g., gitlab_v5.0) to get the description of the modifications below +### 10.3 + +Dockerfiles added: <br /> +ubuntu_v22.4_bcftools_v1.18 at date 20231128 <br /> + + ### 10.2 Dockerfiles added: <br /> diff --git a/ubuntu/v22.04/bcftools/v1.18/Dockerfile b/ubuntu/v22.04/bcftools/v1.18/Dockerfile new file mode 100644 index 0000000000000000000000000000000000000000..f687ede7cfc6bf1d07aee98e257564191fb9ebf9 --- /dev/null +++ b/ubuntu/v22.04/bcftools/v1.18/Dockerfile @@ -0,0 +1,116 @@ +######################################################################### +## ## +## Dockerfile ## +## bcftools ## +## ## +## Gael A. Millot ## +## Bioinformatics and Biostatistics Hub ## +## Computational Biology Department ## +## Institut Pasteur Paris ## +## ## +######################################################################### + + + +# to see the log of the building: +# sudo docker run -ti --entrypoint bash <IMAGE_NAME> +# cat building.log + +# to export the log file of the image building from the container: +# sudo docker images +# sudo docker run -ti --entrypoint bash <IMAGE_NAME> +# exit +# sudo docker container ls -a # to get all the active containers +# sudo docker cp <containerNAMES>:/building.log </host/path/target> + + +# bcftools +# https://github.com/samtools/bcftools/releases/tag/1.14 +# http://www.htslib.org/download/ +# v1.14 + +# base image: ubuntu:16.04 + coreutils v8.30 + gawk v5.1.0 + bc v1.07 + git v2.33.1 +FROM gmillot/ubuntu_v22.04_extended_v1.0:gitlab_v10.2 +# Warning: the name must be exactly what is written in the docker images interface, or sudo docker image ls + + +LABEL Gael.Millot=gael.millot@pasteur.fr +LABEL gitlab.dockerfiles="https://gitlab.pasteur.fr/gmillot/dockerfiles" + +ENV HTS_VERSION=1.18 +ENV BCFTOOLS_VERSION=1.18 + +# bcftools install +RUN echo "\n\n\n\n================\n\napt-get update\n\n================\n\n\n\n" > /building.log \ + && apt-get update --fix-missing \ + | tee -a /building.log \ + # samtools install + && echo "\n\n\n\n================\n\napt-get install\n\n================\n\n\n\n" >> /building.log \ + && apt-get install -y \ + wget \ + gcc \ + make \ + git \ + libbz2-dev \ + zlib1g \ + zlib1g-dev \ + liblzma5 \ + liblzma-dev \ + libncurses5 \ + libncurses5-dev \ + bzip2 \ + libcurl4-openssl-dev \ + libssl-dev \ + libgetopt-complete-perl \ + | tee -a /building.log \ + && echo "\n\n\n\n================\n\nsamtools installation\n\n================\n\n\n\n" >> /building.log \ + && cd /usr/local/ \ + && git clone https://github.com/samtools/htslib.git \ + && cd htslib \ + && git checkout ${HTS_VERSION} \ + && git submodule update --init --recursive \ + && make \ + && cd .. \ + && git clone https://github.com/samtools/bcftools.git \ + && cd bcftools \ + && git checkout ${BCFTOOLS_VERSION} \ + && make \ + && make install \ + && cd /usr/local/ \ + && rm -rf /usr/local/htslib \ + && rm -rf /usr/local/bcftools \ + # end bcftools install + && apt-get remove -y \ + wget \ + gcc \ + make \ + git \ + # important to remove the dependencies after installation to save space in the image that will be built + && echo "\n\n\n\n================\n\napt-get autoremove\n\n================\n\n\n\n" >> /building.log \ + && apt-get autoremove -y \ + | tee -a /building.log ; echo "\n\n\n\n================\n\napt-get clean\n\n================\n\n\n\n" >> /building.log \ + && apt-get clean \ + | tee -a /building.log ; echo "\n\n\n\n================\n\nrm\n\n================\n\n\n\n" >> /building.log \ + && rm -rf /var/lib/apt/lists/* \ + | tee -a /building.log \ + && echo "\n\n\n\n================\n\ninstalled packages\n\n================\n\n\n\n" >> /building.log \ + && apt-cache policy \ + wget \ + gcc \ + make \ + git \ + libbz2-dev \ + zlib1g \ + zlib1g-dev \ + liblzma5 \ + liblzma-dev \ + libncurses5 \ + libncurses5-dev \ + bzip2 \ + libcurl4-openssl-dev \ + libssl-dev \ + libgetopt-complete-perl \ + >> /building.log + +ENTRYPOINT ["/usr/local/bin/bcftools"] + diff --git a/ubuntu/v22.04/bcftools/v1.18/building.log b/ubuntu/v22.04/bcftools/v1.18/building.log new file mode 100644 index 0000000000000000000000000000000000000000..cdcfef60831fe91950d992fc9079ffd7367837f7 --- /dev/null +++ b/ubuntu/v22.04/bcftools/v1.18/building.log @@ -0,0 +1,388 @@ + + + + +================ + +apt-get update + +================ + + + + +Get:1 http://security.ubuntu.com/ubuntu jammy-security InRelease [110 kB] +Get:2 http://archive.ubuntu.com/ubuntu jammy InRelease [270 kB] +Get:3 http://security.ubuntu.com/ubuntu jammy-security/main amd64 Packages [1,250 kB] +Get:4 http://security.ubuntu.com/ubuntu jammy-security/multiverse amd64 Packages [44.0 kB] +Get:5 http://security.ubuntu.com/ubuntu jammy-security/universe amd64 Packages [1,016 kB] +Get:6 http://archive.ubuntu.com/ubuntu jammy-updates InRelease [119 kB] +Get:7 http://security.ubuntu.com/ubuntu jammy-security/restricted amd64 Packages [1,472 kB] +Get:8 http://archive.ubuntu.com/ubuntu jammy-backports InRelease [109 kB] +Get:9 http://archive.ubuntu.com/ubuntu jammy/main amd64 Packages [1,792 kB] +Get:10 http://archive.ubuntu.com/ubuntu jammy/universe amd64 Packages [17.5 MB] +Get:11 http://archive.ubuntu.com/ubuntu jammy/multiverse amd64 Packages [266 kB] +Get:12 http://archive.ubuntu.com/ubuntu jammy/restricted amd64 Packages [164 kB] +Get:13 http://archive.ubuntu.com/ubuntu jammy-updates/multiverse amd64 Packages [49.8 kB] +Get:14 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 Packages [1,521 kB] +Get:15 http://archive.ubuntu.com/ubuntu jammy-updates/restricted amd64 Packages [1,498 kB] +Get:16 http://archive.ubuntu.com/ubuntu jammy-updates/universe amd64 Packages [1,284 kB] +Get:17 http://archive.ubuntu.com/ubuntu jammy-backports/main amd64 Packages [78.3 kB] +Get:18 http://archive.ubuntu.com/ubuntu jammy-backports/universe amd64 Packages [32.6 kB] +Fetched 28.5 MB in 15s (1,857 kB/s) +Reading package lists... + + + + +================ + +apt-get install + +================ + + + + +Reading package lists... +Building dependency tree... +Reading state information... +bzip2 is already the newest version (1.0.8-5build1). +bzip2 set to manually installed. +gcc is already the newest version (4:11.2.0-1ubuntu1). +gcc set to manually installed. +liblzma5 is already the newest version (5.2.5-2ubuntu1). +make is already the newest version (4.3-4.1build1). +make set to manually installed. +wget is already the newest version (1.21.2-2ubuntu1). +git is already the newest version (1:2.34.1-1ubuntu1.10). +zlib1g is already the newest version (1:1.2.11.dfsg-2ubuntu9.2). +The following additional packages will be installed: + bzip2-doc libcurl4 libgpm2 libncurses-dev libssl3 libtinfo5 +Suggested packages: + libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev + pkg-config gpm liblzma-doc ncurses-doc libssl-doc +The following NEW packages will be installed: + bzip2-doc libbz2-dev libcurl4 libcurl4-openssl-dev libgetopt-complete-perl + libgpm2 liblzma-dev libncurses-dev libncurses5 libncurses5-dev libssl-dev + libtinfo5 zlib1g-dev +The following packages will be upgraded: + libssl3 +1 upgraded, 13 newly installed, 0 to remove and 18 not upgraded. +Need to get 6,458 kB of archives. +After this operation, 20.3 MB of additional disk space will be used. +Get:1 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libssl3 amd64 3.0.2-0ubuntu1.12 [1,901 kB] +Get:2 http://archive.ubuntu.com/ubuntu jammy/main amd64 bzip2-doc all 1.0.8-5build1 [500 kB] +Get:3 http://archive.ubuntu.com/ubuntu jammy/main amd64 libbz2-dev amd64 1.0.8-5build1 [32.5 kB] +Get:4 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libcurl4 amd64 7.81.0-1ubuntu1.14 [290 kB] +Get:5 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libcurl4-openssl-dev amd64 7.81.0-1ubuntu1.14 [386 kB] +Get:6 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libgetopt-complete-perl all 0.26-2.1 [49.4 kB] +Get:7 http://archive.ubuntu.com/ubuntu jammy/main amd64 libgpm2 amd64 1.20.7-10build1 [15.3 kB] +Get:8 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libncurses-dev amd64 6.3-2ubuntu0.1 [381 kB] +Get:9 http://archive.ubuntu.com/ubuntu jammy-updates/universe amd64 libtinfo5 amd64 6.3-2ubuntu0.1 [100 kB] +Get:10 http://archive.ubuntu.com/ubuntu jammy-updates/universe amd64 libncurses5 amd64 6.3-2ubuntu0.1 [107 kB] +Get:11 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libncurses5-dev amd64 6.3-2ubuntu0.1 [790 B] +Get:12 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libssl-dev amd64 3.0.2-0ubuntu1.12 [2,373 kB] +Get:13 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu9.2 [164 kB] +Get:14 http://archive.ubuntu.com/ubuntu jammy/main amd64 liblzma-dev amd64 5.2.5-2ubuntu1 [159 kB] +Fetched 6,458 kB in 9s (757 kB/s) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16004 files and directories currently installed.) +Preparing to unpack .../libssl3_3.0.2-0ubuntu1.12_amd64.deb ... +Unpacking libssl3:amd64 (3.0.2-0ubuntu1.12) over (3.0.2-0ubuntu1.10) ... +Setting up libssl3:amd64 (3.0.2-0ubuntu1.12) ... +debconf: unable to initialize frontend: Dialog +debconf: (TERM is not set, so the dialog frontend is not usable.) +debconf: falling back to frontend: Readline +Selecting previously unselected package bzip2-doc. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16004 files and directories currently installed.) +Preparing to unpack .../00-bzip2-doc_1.0.8-5build1_all.deb ... +Unpacking bzip2-doc (1.0.8-5build1) ... +Selecting previously unselected package libbz2-dev:amd64. +Preparing to unpack .../01-libbz2-dev_1.0.8-5build1_amd64.deb ... +Unpacking libbz2-dev:amd64 (1.0.8-5build1) ... +Selecting previously unselected package libcurl4:amd64. +Preparing to unpack .../02-libcurl4_7.81.0-1ubuntu1.14_amd64.deb ... +Unpacking libcurl4:amd64 (7.81.0-1ubuntu1.14) ... +Selecting previously unselected package libcurl4-openssl-dev:amd64. +Preparing to unpack .../03-libcurl4-openssl-dev_7.81.0-1ubuntu1.14_amd64.deb ... +Unpacking libcurl4-openssl-dev:amd64 (7.81.0-1ubuntu1.14) ... +Selecting previously unselected package libgetopt-complete-perl. +Preparing to unpack .../04-libgetopt-complete-perl_0.26-2.1_all.deb ... +Unpacking libgetopt-complete-perl (0.26-2.1) ... +Selecting previously unselected package libgpm2:amd64. +Preparing to unpack .../05-libgpm2_1.20.7-10build1_amd64.deb ... +Unpacking libgpm2:amd64 (1.20.7-10build1) ... +Selecting previously unselected package libncurses-dev:amd64. +Preparing to unpack .../06-libncurses-dev_6.3-2ubuntu0.1_amd64.deb ... +Unpacking libncurses-dev:amd64 (6.3-2ubuntu0.1) ... +Selecting previously unselected package libtinfo5:amd64. +Preparing to unpack .../07-libtinfo5_6.3-2ubuntu0.1_amd64.deb ... +Unpacking libtinfo5:amd64 (6.3-2ubuntu0.1) ... +Selecting previously unselected package libncurses5:amd64. +Preparing to unpack .../08-libncurses5_6.3-2ubuntu0.1_amd64.deb ... +Unpacking libncurses5:amd64 (6.3-2ubuntu0.1) ... +Selecting previously unselected package libncurses5-dev:amd64. +Preparing to unpack .../09-libncurses5-dev_6.3-2ubuntu0.1_amd64.deb ... +Unpacking libncurses5-dev:amd64 (6.3-2ubuntu0.1) ... +Selecting previously unselected package libssl-dev:amd64. +Preparing to unpack .../10-libssl-dev_3.0.2-0ubuntu1.12_amd64.deb ... +Unpacking libssl-dev:amd64 (3.0.2-0ubuntu1.12) ... +Selecting previously unselected package zlib1g-dev:amd64. +Preparing to unpack .../11-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu9.2_amd64.deb ... +Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu9.2) ... +Selecting previously unselected package liblzma-dev:amd64. +Preparing to unpack .../12-liblzma-dev_5.2.5-2ubuntu1_amd64.deb ... +Unpacking liblzma-dev:amd64 (5.2.5-2ubuntu1) ... +Setting up bzip2-doc (1.0.8-5build1) ... +Setting up libncurses-dev:amd64 (6.3-2ubuntu0.1) ... +Setting up libgpm2:amd64 (1.20.7-10build1) ... +Setting up libssl-dev:amd64 (3.0.2-0ubuntu1.12) ... +Setting up liblzma-dev:amd64 (5.2.5-2ubuntu1) ... +Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu9.2) ... +Setting up libgetopt-complete-perl (0.26-2.1) ... +Setting up libncurses5-dev:amd64 (6.3-2ubuntu0.1) ... +Setting up libcurl4:amd64 (7.81.0-1ubuntu1.14) ... +Setting up libtinfo5:amd64 (6.3-2ubuntu0.1) ... +Setting up libbz2-dev:amd64 (1.0.8-5build1) ... +Setting up libncurses5:amd64 (6.3-2ubuntu0.1) ... +Setting up libcurl4-openssl-dev:amd64 (7.81.0-1ubuntu1.14) ... +Processing triggers for libc-bin (2.35-0ubuntu3.4) ... + + + + +================ + +samtools installation + +================ + + + + + + + + +================ + +apt-get autoremove + +================ + + + + +Reading package lists... +Building dependency tree... +Reading state information... +The following packages will be REMOVED: + binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-11 dirmngr + fakeroot g++-11 gcc-11 gcc-11-base git-man gnupg gnupg-l10n gnupg-utils gpg + gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm less + libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl + libasan6 libassuan0 libatomic1 libbinutils libcbor0.8 libcc1-0 libctf-nobfd0 + libctf0 libcurl3-gnutls libdpkg-perl libedit2 liberror-perl libfakeroot + libfido2-1 libfile-fcntllock-perl libgcc-11-dev libgomp1 libisl23 libitm1 + libksba8 liblocale-gettext-perl liblsan0 libmpc3 libnpth0 libquadmath0 + libsqlite3-0 libstdc++-11-dev libtsan0 libubsan1 libxext6 libxmuu1 + lto-disabled-list openssh-client patch pinentry-curses xauth xz-utils +0 upgraded, 0 newly installed, 61 to remove and 18 not upgraded. +After this operation, 202 MB disk space will be freed. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15262 files and directories currently installed.) +Removing g++-11 (11.4.0-1ubuntu1~22.04) ... +Removing gcc-11 (11.4.0-1ubuntu1~22.04) ... +Removing binutils (2.38-4ubuntu2.3) ... +Removing binutils-x86-64-linux-gnu (2.38-4ubuntu2.3) ... +Removing libctf0:amd64 (2.38-4ubuntu2.3) ... +Removing libbinutils:amd64 (2.38-4ubuntu2.3) ... +Removing binutils-common:amd64 (2.38-4ubuntu2.3) ... +Removing cpp (4:11.2.0-1ubuntu1) ... +Removing cpp-11 (11.4.0-1ubuntu1~22.04) ... +Removing gnupg (2.2.27-3ubuntu2.1) ... +Removing gpg-wks-client (2.2.27-3ubuntu2.1) ... +Removing dirmngr (2.2.27-3ubuntu2.1) ... +Removing fakeroot (1.28-1ubuntu1) ... +update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode +update-alternatives: warning: skip creation of /usr/share/man/man1/faked.1.gz because associated file /usr/share/man/man1/faked-tcp.1.gz (of link group fakeroot) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/es/man1/faked.1.gz because associated file /usr/share/man/es/man1/faked-tcp.1.gz (of link group fakeroot) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/fr/man1/faked.1.gz because associated file /usr/share/man/fr/man1/faked-tcp.1.gz (of link group fakeroot) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/sv/man1/faked.1.gz because associated file /usr/share/man/sv/man1/faked-tcp.1.gz (of link group fakeroot) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/man1/fakeroot.1.gz because associated file /usr/share/man/man1/fakeroot-tcp.1.gz (of link group fakeroot) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/es/man1/fakeroot.1.gz because associated file /usr/share/man/es/man1/fakeroot-tcp.1.gz (of link group fakeroot) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/fr/man1/fakeroot.1.gz because associated file /usr/share/man/fr/man1/fakeroot-tcp.1.gz (of link group fakeroot) doesn't exist +update-alternatives: warning: skip creation of /usr/share/man/sv/man1/fakeroot.1.gz because associated file /usr/share/man/sv/man1/fakeroot-tcp.1.gz (of link group fakeroot) doesn't exist +Removing libstdc++-11-dev:amd64 (11.4.0-1ubuntu1~22.04) ... +Removing libgcc-11-dev:amd64 (11.4.0-1ubuntu1~22.04) ... +Removing libtsan0:amd64 (11.4.0-1ubuntu1~22.04) ... +Removing libasan6:amd64 (11.4.0-1ubuntu1~22.04) ... +Removing gcc-11-base:amd64 (11.4.0-1ubuntu1~22.04) ... +Removing git-man (1:2.34.1-1ubuntu1.10) ... +Removing gnupg-l10n (2.2.27-3ubuntu2.1) ... +Removing gnupg-utils (2.2.27-3ubuntu2.1) ... +Removing gpg-wks-server (2.2.27-3ubuntu2.1) ... +Removing gpg (2.2.27-3ubuntu2.1) ... +Removing gpg-agent (2.2.27-3ubuntu2.1) ... +Removing gpgsm (2.2.27-3ubuntu2.1) ... +Removing gpgconf (2.2.27-3ubuntu2.1) ... +Removing less (590-1ubuntu0.22.04.1) ... +Removing libalgorithm-diff-xs-perl (0.04-6build3) ... +Removing libalgorithm-merge-perl (0.08-3) ... +Removing libalgorithm-diff-perl (1.201-1) ... +Removing pinentry-curses (1.1.1-1build2) ... +Removing libassuan0:amd64 (2.5.5-1build1) ... +Removing libatomic1:amd64 (12.3.0-1ubuntu1~22.04) ... +Removing openssh-client (1:8.9p1-3ubuntu0.4) ... +Removing libfido2-1:amd64 (1.10.0-1) ... +Removing libcbor0.8:amd64 (0.8.0-2ubuntu1) ... +Removing libcc1-0:amd64 (12.3.0-1ubuntu1~22.04) ... +Removing libctf-nobfd0:amd64 (2.38-4ubuntu2.3) ... +Removing libcurl3-gnutls:amd64 (7.81.0-1ubuntu1.14) ... +Removing libdpkg-perl (1.21.1ubuntu2.2) ... +Removing libedit2:amd64 (3.1-20210910-1build1) ... +Removing liberror-perl (0.17029-1) ... +Removing libfakeroot:amd64 (1.28-1ubuntu1) ... +Removing libfile-fcntllock-perl (0.22-3build7) ... +Removing libgomp1:amd64 (12.3.0-1ubuntu1~22.04) ... +Removing libisl23:amd64 (0.24-2build1) ... +Removing libitm1:amd64 (12.3.0-1ubuntu1~22.04) ... +Removing libksba8:amd64 (1.6.0-2ubuntu0.2) ... +Removing liblocale-gettext-perl (1.07-4build3) ... +Removing liblsan0:amd64 (12.3.0-1ubuntu1~22.04) ... +Removing libmpc3:amd64 (1.2.1-2build1) ... +Removing libnpth0:amd64 (1.6-3build2) ... +Removing libquadmath0:amd64 (12.3.0-1ubuntu1~22.04) ... +Removing libsqlite3-0:amd64 (3.37.2-2ubuntu0.1) ... +Removing libubsan1:amd64 (12.3.0-1ubuntu1~22.04) ... +Removing xauth (1:1.1-1build2) ... +Removing libxext6:amd64 (2:1.3.4-1build1) ... +Removing libxmuu1:amd64 (2:1.1.3-3) ... +Removing lto-disabled-list (24) ... +Removing patch (2.7.6-7build2) ... +Removing xz-utils (5.2.5-2ubuntu1) ... +Processing triggers for libc-bin (2.35-0ubuntu3.4) ... + + + + +================ + +apt-get clean + +================ + + + + + + + + +================ + +rm + +================ + + + + + + + + +================ + +installed packages + +================ + + + + +wget: + Installed: (none) + Candidate: (none) + Version table: + 1.21.2-2ubuntu1 -1 + 100 /var/lib/dpkg/status +gcc: + Installed: (none) + Candidate: (none) + Version table: +make: + Installed: (none) + Candidate: (none) + Version table: +git: + Installed: (none) + Candidate: (none) + Version table: + 1:2.34.1-1ubuntu1.10 -1 + 100 /var/lib/dpkg/status +libbz2-dev: + Installed: 1.0.8-5build1 + Candidate: 1.0.8-5build1 + Version table: + *** 1.0.8-5build1 100 + 100 /var/lib/dpkg/status +zlib1g: + Installed: 1:1.2.11.dfsg-2ubuntu9.2 + Candidate: 1:1.2.11.dfsg-2ubuntu9.2 + Version table: + *** 1:1.2.11.dfsg-2ubuntu9.2 100 + 100 /var/lib/dpkg/status +zlib1g-dev: + Installed: 1:1.2.11.dfsg-2ubuntu9.2 + Candidate: 1:1.2.11.dfsg-2ubuntu9.2 + Version table: + *** 1:1.2.11.dfsg-2ubuntu9.2 100 + 100 /var/lib/dpkg/status +liblzma5: + Installed: 5.2.5-2ubuntu1 + Candidate: 5.2.5-2ubuntu1 + Version table: + *** 5.2.5-2ubuntu1 100 + 100 /var/lib/dpkg/status +liblzma-dev: + Installed: 5.2.5-2ubuntu1 + Candidate: 5.2.5-2ubuntu1 + Version table: + *** 5.2.5-2ubuntu1 100 + 100 /var/lib/dpkg/status +libncurses5: + Installed: 6.3-2ubuntu0.1 + Candidate: 6.3-2ubuntu0.1 + Version table: + *** 6.3-2ubuntu0.1 100 + 100 /var/lib/dpkg/status +libncurses5-dev: + Installed: 6.3-2ubuntu0.1 + Candidate: 6.3-2ubuntu0.1 + Version table: + *** 6.3-2ubuntu0.1 100 + 100 /var/lib/dpkg/status +bzip2: + Installed: 1.0.8-5build1 + Candidate: 1.0.8-5build1 + Version table: + *** 1.0.8-5build1 100 + 100 /var/lib/dpkg/status +libcurl4-openssl-dev: + Installed: 7.81.0-1ubuntu1.14 + Candidate: 7.81.0-1ubuntu1.14 + Version table: + *** 7.81.0-1ubuntu1.14 100 + 100 /var/lib/dpkg/status +libssl-dev: + Installed: 3.0.2-0ubuntu1.12 + Candidate: 3.0.2-0ubuntu1.12 + Version table: + *** 3.0.2-0ubuntu1.12 100 + 100 /var/lib/dpkg/status +libgetopt-complete-perl: + Installed: 0.26-2.1 + Candidate: 0.26-2.1 + Version table: + *** 0.26-2.1 100 + 100 /var/lib/dpkg/status