diff --git a/README.md b/README.md
index 0dbc5f43202dda0dda8b4c5f6dcfec8a88a4030b..8e92ad2835e4ef1d4cf8054e1306725d35493cc5 100644
--- a/README.md
+++ b/README.md
@@ -71,10 +71,17 @@ Hub-CDB Institut Pasteur & DSI Institut Pasteur
 
 Use the gitlab tag of the docker image (e.g., gitlab_v5.0) to get the description of the modifications below
 
+
+### 8.11
+
+Dockerfiles added: <br />
+ubuntu/v20.04/slivar/v1.0 at date 20220705: from ubuntu:20.04 with slivar added
+
+
 ### 8.10
 
 Dockerfiles added: <br />
-R\v4.1.2\extended\v1.1 at date 20220628: 
+R\v4.1.2\extended\v1.1 at date 20220628: for slitherine, from gmillot/r-base_v4.1.2:gitlab_v8.2 with notably HiCcompare added
 
 
 ### v8.9
diff --git a/building.log b/building.log
deleted file mode 100644
index 6e067ba3cdc74a5aa5ac0d285673e744eae51307..0000000000000000000000000000000000000000
--- a/building.log
+++ /dev/null
@@ -1,3546 +0,0 @@
-
-
-
-
-================
-
-apt-get update
-
-================
-
-
-
-
-
-
-
-
-================
-
-apt-get install
-
-================
-
-
-
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-procps is already the newest version (2:3.3.16-1ubuntu2.3).
-The following additional packages will be installed:
-  dvisvgm fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius
-  fonts-adf-universalis fonts-cabin fonts-cantarell fonts-comfortaa
-  fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito
-  fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond
-  fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf
-  fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-baskerville
-  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
-  fonts-gfs-porson fonts-gfs-solomos fonts-go fonts-junicode fonts-lato
-  fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo
-  fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans
-  fonts-roboto-unhinted fonts-sil-gentium fonts-sil-gentium-basic
-  fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix fonts-texgyre
-  fonts-urw-base35 javascript-common libapache-pom-java libauthen-sasl-perl
-  libavahi-client3 libavahi-common-data libavahi-common3 libbibutils6
-  libcommons-logging-java libcommons-parent-java libcups2 libdata-dump-perl
-  libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1
-  libdrm2 libedit2 libencode-locale-perl libexpat1 libexpat1-dev
-  libfile-listing-perl libfont-afm-perl libfontbox-java libfontenc1
-  libfreetype-dev libfreetype6-dev libghc-pandoc-citeproc-data libgl1
-  libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgs9
-  libgs9-common libharfbuzz-icu0 libhtml-form-perl libhtml-format-perl
-  libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
-  libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
-  libhttp-message-perl libhttp-negotiate-perl libidn11 libijs-0.35
-  libio-html-perl libio-socket-ssl-perl libjbig2dec0 libjs-jquery libkpathsea6
-  liblcms2-2 libllvm12 liblwp-mediatypes-perl liblwp-protocol-https-perl
-  libmailtools-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl
-  libnspr4 libnss3 libopenjp2-7 libpciaccess0 libpdfbox-java libpoppler-cpp0v5
-  libpoppler-dev libpoppler97 libptexenc1 libqpdf26 libruby2.7
-  libsensors-config libsensors5 libsynctex2 libteckit0 libtexlua53
-  libtexluajit2 libtext-unidecode-perl libtimedate-perl libtry-tiny-perl
-  liburi-perl libutempter0 libuuid1 libvulkan1 libwayland-client0 libwoff1
-  libwww-perl libwww-robotrules-perl libx11-xcb1 libxaw7 libxcb-dri2-0
-  libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-shape0
-  libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxfixes3 libxi6 libxinerama1
-  libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl
-  libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl
-  libxml-sax-perl libxmu6 libxpm4 libxrandr2 libxshmfence1 libxtst6 libxv1
-  libxxf86dga1 libxxf86vm1 libzzip-0-13 mesa-vulkan-drivers netbase
-  pandoc-data perl-openssl-defaults poppler-data preview-latex-style rake ruby
-  ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc
-  ruby2.7 rubygems-integration t1utils tcl tcl8.6 teckit tex-common tex-gyre
-  texlive-base texlive-binaries texlive-fonts-extra-links texlive-lang-greek
-  texlive-latex-base texlive-pictures tipa tk tk8.6 uuid-dev x11-utils
-  xbitmaps xfonts-encodings xfonts-utils xterm
-Suggested packages:
-  fonts-noto fontforge ghostscript-x apache2 | lighttpd | httpd
-  libdigest-hmac-perl libgssapi-perl libavalon-framework-java
-  libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java
-  cups-common freetype2-doc liblcms2-utils libcrypt-ssleay-perl pciutils
-  lm-sensors libauthen-ntlm-perl libxml-sax-expatxs-perl context wkhtmltopdf
-  librsvg2-bin groff ghc nodejs php python libjs-mathjax node-katex
-  poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho
-  fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai
-  fonts-arphic-uming fonts-nanum ri ruby-dev bundler tcl-tclreadline debhelper
-  perl-tk xpdf | pdf-viewer xzdec cm-super texlive-fonts-extra-doc
-  texlive-fonts-recommended-doc texlive-latex-base-doc python3-pygments
-  icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl
-  texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pstricks
-  dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex
-  default-jre-headless texlive-science-doc mesa-utils xfonts-cyrillic
-Recommended packages:
-  uuid-runtime
-The following NEW packages will be installed:
-  dvisvgm fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius
-  fonts-adf-universalis fonts-cabin fonts-cantarell fonts-comfortaa
-  fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito
-  fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond
-  fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf
-  fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-baskerville
-  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
-  fonts-gfs-porson fonts-gfs-solomos fonts-go fonts-junicode fonts-lato
-  fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo
-  fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans
-  fonts-roboto-unhinted fonts-sil-gentium fonts-sil-gentium-basic
-  fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix fonts-texgyre
-  fonts-urw-base35 ghostscript javascript-common libapache-pom-java
-  libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3
-  libbibutils6 libcommons-logging-java libcommons-parent-java libcups2
-  libdata-dump-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2
-  libdrm-radeon1 libdrm2 libedit2 libencode-locale-perl libexpat1-dev
-  libfile-listing-perl libfont-afm-perl libfontbox-java libfontconfig1-dev
-  libfontenc1 libfreetype-dev libfreetype6-dev libghc-pandoc-citeproc-data
-  libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgs9
-  libgs9-common libharfbuzz-icu0 libhtml-form-perl libhtml-format-perl
-  libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
-  libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
-  libhttp-message-perl libhttp-negotiate-perl libidn11 libijs-0.35
-  libio-html-perl libio-socket-ssl-perl libjbig2dec0 libjs-jquery libkpathsea6
-  liblcms2-2 libllvm12 liblwp-mediatypes-perl liblwp-protocol-https-perl
-  libmailtools-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl
-  libnspr4 libnss3 libopenjp2-7 libpciaccess0 libpdfbox-java
-  libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev libpoppler97 libptexenc1
-  libqpdf26 libruby2.7 libsensors-config libsensors5 libsynctex2 libteckit0
-  libtexlua53 libtexluajit2 libtext-unidecode-perl libtimedate-perl
-  libtry-tiny-perl liburi-perl libutempter0 libvulkan1 libwayland-client0
-  libwoff1 libwww-perl libwww-robotrules-perl libx11-xcb1 libxaw7
-  libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0
-  libxcb-shape0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxfixes3 libxi6
-  libxinerama1 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl
-  libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl
-  libxml-sax-perl libxmu6 libxpm4 libxrandr2 libxshmfence1 libxtst6 libxv1
-  libxxf86dga1 libxxf86vm1 libzzip-0-13 lmodern mesa-vulkan-drivers netbase
-  pandoc pandoc-citeproc pandoc-data perl-openssl-defaults poppler-data
-  preview-latex-style qpdf rake ruby ruby-minitest ruby-net-telnet
-  ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration
-  t1utils tcl tcl8.6 teckit tex-common tex-gyre texinfo texlive-base
-  texlive-binaries texlive-fonts-extra texlive-fonts-extra-links
-  texlive-fonts-recommended texlive-lang-greek texlive-latex-base
-  texlive-latex-extra texlive-latex-recommended texlive-luatex
-  texlive-pictures texlive-plain-generic texlive-science texlive-xetex tipa tk
-  tk8.6 uuid-dev x11-utils xbitmaps xfonts-encodings xfonts-utils xterm
-The following packages will be upgraded:
-  libexpat1 libuuid1
-2 upgraded, 215 newly installed, 0 to remove and 91 not upgraded.
-Need to get 834 MB of archives.
-After this operation, 2,899 MB of additional disk space will be used.
-Get:1 http://archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1,805 kB]
-Get:2 http://archive.ubuntu.com/ubuntu focal/main amd64 fonts-lato all 2.0-2 [2,698 kB]
-Get:3 http://archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1,475 kB]
-Get:4 http://archive.ubuntu.com/ubuntu focal/universe amd64 tex-common all 6.13 [32.7 kB]
-Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuuid1 amd64 2.34-0.1ubuntu9.3 [19.9 kB]
-Get:6 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libexpat1 amd64 2.2.9-1ubuntu0.4 [74.4 kB]
-Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 netbase all 6.1 [13.1 kB]
-Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-common all 2.4.107-8ubuntu1~20.04.2 [5,396 B]
-Get:9 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm2 amd64 2.4.107-8ubuntu1~20.04.2 [34.1 kB]
-Get:10 http://archive.ubuntu.com/ubuntu focal/main amd64 libedit2 amd64 3.1-20191231-1 [87.0 kB]
-Get:11 http://archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6,333 kB]
-Get:12 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.5 [681 kB]
-Get:13 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libavahi-common-data amd64 0.7-4ubuntu7.1 [21.4 kB]
-Get:14 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libavahi-common3 amd64 0.7-4ubuntu7.1 [21.7 kB]
-Get:15 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libavahi-client3 amd64 0.7-4ubuntu7.1 [25.5 kB]
-Get:16 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libcups2 amd64 2.3.1-9ubuntu1.2 [233 kB]
-Get:17 http://archive.ubuntu.com/ubuntu focal/main amd64 libidn11 amd64 1.33-2.2ubuntu2 [46.2 kB]
-Get:18 http://archive.ubuntu.com/ubuntu focal/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB]
-Get:19 http://archive.ubuntu.com/ubuntu focal/main amd64 libjbig2dec0 amd64 0.18-1ubuntu1 [60.0 kB]
-Get:20 http://archive.ubuntu.com/ubuntu focal/main amd64 liblcms2-2 amd64 2.9-4 [140 kB]
-Get:21 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu4.20.04.1 [141 kB]
-Get:22 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9 amd64 9.50~dfsg-5ubuntu4.5 [2,172 kB]
-Get:23 http://archive.ubuntu.com/ubuntu focal/main amd64 libkpathsea6 amd64 2019.20190605.51237-3build2 [57.0 kB]
-Get:24 http://archive.ubuntu.com/ubuntu focal/main amd64 libwoff1 amd64 1.0.2-1build2 [42.0 kB]
-Get:25 http://archive.ubuntu.com/ubuntu focal/universe amd64 dvisvgm amd64 2.8.1-1build1 [1,048 kB]
-Get:26 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-adf-accanthis all 0.20190904-1.1 [203 kB]
-Get:27 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-adf-berenis all 0.20190904-1.1 [313 kB]
-Get:28 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-adf-gillius all 0.20190904-1.1 [190 kB]
-Get:29 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-adf-universalis all 0.20190904-1.1 [112 kB]
-Get:30 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-cabin all 1.5-3 [141 kB]
-Get:31 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-cantarell all 0.111-2 [250 kB]
-Get:32 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-comfortaa all 3.001-3 [129 kB]
-Get:33 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 fonts-croscore all 20200323-1build1~ubuntu20.04.1 [2,140 kB]
-Get:34 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-crosextra-caladea all 20130214-2 [82.4 kB]
-Get:35 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-crosextra-carlito all 20130920-1 [742 kB]
-Get:36 http://archive.ubuntu.com/ubuntu focal/main amd64 fonts-dejavu-extra all 2.37-1 [1,953 kB]
-Get:37 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-ebgaramond all 0.016-1ubuntu1 [472 kB]
-Get:38 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-ebgaramond-extra all 0.016-1ubuntu1 [2,161 kB]
-Get:39 http://archive.ubuntu.com/ubuntu focal/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [514 kB]
-Get:40 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-freefont-otf all 20120503-10 [3,056 kB]
-Get:41 http://archive.ubuntu.com/ubuntu focal/main amd64 fonts-freefont-ttf all 20120503-10 [2,440 kB]
-Get:42 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-gfs-artemisia all 1.1-5 [260 kB]
-Get:43 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-gfs-baskerville all 1.1-5 [43.4 kB]
-Get:44 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-gfs-complutum all 1.1-6 [41.6 kB]
-Get:45 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-gfs-didot all 1.1-6 [278 kB]
-Get:46 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-gfs-neohellenic all 1.1-6 [215 kB]
-Get:47 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-gfs-olga all 1.1-5 [33.4 kB]
-Get:48 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-gfs-porson all 1.1-6 [33.7 kB]
-Get:49 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-gfs-solomos all 1.1-5 [40.7 kB]
-Get:50 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-go all 0~20170330-1 [369 kB]
-Get:51 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-junicode all 1.002-2 [828 kB]
-Get:52 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-linuxlibertine all 5.3.0-4 [1,627 kB]
-Get:53 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lmodern all 2.004.5-6 [4,532 kB]
-Get:54 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lobster all 2.0-2 [38.7 kB]
-Get:55 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lobstertwo all 2.0-2 [92.7 kB]
-Get:56 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 fonts-noto-core all 20200323-1build1~ubuntu20.04.1 [10.9 MB]
-Get:57 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 fonts-noto-mono all 20200323-1build1~ubuntu20.04.1 [80.6 kB]
-Get:58 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-oflb-asana-math all 000.907-6 [246 kB]
-Get:59 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-open-sans all 1.11-1 [575 kB]
-Get:60 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-roboto-unhinted all 2:0~20170802-3 [2,376 kB]
-Get:61 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-sil-gentium all 20081126:1.03-2 [245 kB]
-Get:62 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-sil-gentium-basic all 1.102-1 [384 kB]
-Get:63 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-sil-gentiumplus all 5.000-2 [2,807 kB]
-Get:64 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-sil-gentiumplus-compact all 5.000-2 [1,514 kB]
-Get:65 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-texgyre all 20180621-3 [10.2 MB]
-Get:66 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 ghostscript amd64 9.50~dfsg-5ubuntu4.5 [51.8 kB]
-Get:67 http://archive.ubuntu.com/ubuntu focal/main amd64 javascript-common all 11 [6,066 B]
-Get:68 http://archive.ubuntu.com/ubuntu focal/universe amd64 libapache-pom-java all 18-1 [4,720 B]
-Get:69 http://archive.ubuntu.com/ubuntu focal/universe amd64 libbibutils6 amd64 6.2-1 [365 kB]
-Get:70 http://archive.ubuntu.com/ubuntu focal/universe amd64 libcommons-parent-java all 43-1 [10.8 kB]
-Get:71 http://archive.ubuntu.com/ubuntu focal/universe amd64 libcommons-logging-java all 1.2-2 [60.3 kB]
-Get:72 http://archive.ubuntu.com/ubuntu focal/main amd64 libdata-dump-perl all 1.23-1 [27.0 kB]
-Get:73 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-amdgpu1 amd64 2.4.107-8ubuntu1~20.04.2 [18.6 kB]
-Get:74 http://archive.ubuntu.com/ubuntu focal/main amd64 libpciaccess0 amd64 0.16-0ubuntu1 [17.9 kB]
-Get:75 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-intel1 amd64 2.4.107-8ubuntu1~20.04.2 [60.3 kB]
-Get:76 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-nouveau2 amd64 2.4.107-8ubuntu1~20.04.2 [16.6 kB]
-Get:77 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-radeon1 amd64 2.4.107-8ubuntu1~20.04.2 [19.7 kB]
-Get:78 http://archive.ubuntu.com/ubuntu focal/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB]
-Get:79 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libexpat1-dev amd64 2.2.9-1ubuntu0.4 [117 kB]
-Get:80 http://archive.ubuntu.com/ubuntu focal/main amd64 libtimedate-perl all 2.3200-1 [34.0 kB]
-Get:81 http://archive.ubuntu.com/ubuntu focal/main amd64 libhttp-date-perl all 6.05-1 [9,920 B]
-Get:82 http://archive.ubuntu.com/ubuntu focal/main amd64 libfile-listing-perl all 6.04-1 [9,774 B]
-Get:83 http://archive.ubuntu.com/ubuntu focal/main amd64 libfont-afm-perl all 1.20-2 [13.2 kB]
-Get:84 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libfreetype-dev amd64 2.10.1-2ubuntu0.1 [493 kB]
-Get:85 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libfreetype6-dev amd64 2.10.1-2ubuntu0.1 [9,812 B]
-Get:86 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 uuid-dev amd64 2.34-0.1ubuntu9.3 [33.6 kB]
-Get:87 http://archive.ubuntu.com/ubuntu focal/main amd64 libfontconfig1-dev amd64 2.13.1-2ubuntu3 [731 kB]
-Get:88 http://archive.ubuntu.com/ubuntu focal/main amd64 libfontenc1 amd64 1:1.1.4-0ubuntu1 [14.0 kB]
-Get:89 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libglapi-mesa amd64 21.2.6-0ubuntu0.1~20.04.2 [27.4 kB]
-Get:90 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libllvm12 amd64 1:12.0.0-3ubuntu1~20.04.5 [18.8 MB]
-Get:91 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libsensors-config all 1:3.6.0-2ubuntu1.1 [6,052 B]
-Get:92 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libsensors5 amd64 1:3.6.0-2ubuntu1.1 [27.2 kB]
-Get:93 http://archive.ubuntu.com/ubuntu focal/main amd64 libvulkan1 amd64 1.2.131.2-1 [93.3 kB]
-Get:94 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libgl1-mesa-dri amd64 21.2.6-0ubuntu0.1~20.04.2 [11.0 MB]
-Get:95 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libx11-xcb1 amd64 2:1.6.9-2ubuntu1.2 [9,372 B]
-Get:96 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb-dri2-0 amd64 1.14-2 [6,920 B]
-Get:97 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb-dri3-0 amd64 1.14-2 [6,552 B]
-Get:98 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb-glx0 amd64 1.14-2 [22.1 kB]
-Get:99 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb-present0 amd64 1.14-2 [5,560 B]
-Get:100 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb-sync1 amd64 1.14-2 [8,884 B]
-Get:101 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xfixes0 amd64 1.14-2 [9,296 B]
-Get:102 http://archive.ubuntu.com/ubuntu focal/main amd64 libxfixes3 amd64 1:5.0.3-2 [10.9 kB]
-Get:103 http://archive.ubuntu.com/ubuntu focal/main amd64 libxshmfence1 amd64 1.3-1 [5,028 B]
-Get:104 http://archive.ubuntu.com/ubuntu focal/main amd64 libxxf86vm1 amd64 1:1.1.4-1build1 [10.2 kB]
-Get:105 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libglx-mesa0 amd64 21.2.6-0ubuntu0.1~20.04.2 [137 kB]
-Get:106 http://archive.ubuntu.com/ubuntu focal/main amd64 libharfbuzz-icu0 amd64 2.6.4-1ubuntu4 [5,580 B]
-Get:107 http://archive.ubuntu.com/ubuntu focal/main amd64 libhtml-tagset-perl all 3.20-4 [12.5 kB]
-Get:108 http://archive.ubuntu.com/ubuntu focal/main amd64 liburi-perl all 1.76-2 [77.5 kB]
-Get:109 http://archive.ubuntu.com/ubuntu focal/main amd64 libhtml-parser-perl amd64 3.72-5 [86.3 kB]
-Get:110 http://archive.ubuntu.com/ubuntu focal/main amd64 libio-html-perl all 1.001-1 [14.9 kB]
-Get:111 http://archive.ubuntu.com/ubuntu focal/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.5 kB]
-Get:112 http://archive.ubuntu.com/ubuntu focal/main amd64 libhttp-message-perl all 6.22-1 [76.1 kB]
-Get:113 http://archive.ubuntu.com/ubuntu focal/main amd64 libhtml-form-perl all 6.07-1 [22.2 kB]
-Get:114 http://archive.ubuntu.com/ubuntu focal/main amd64 libhtml-tree-perl all 5.07-2 [200 kB]
-Get:115 http://archive.ubuntu.com/ubuntu focal/main amd64 libhtml-format-perl all 2.12-1 [41.3 kB]
-Get:116 http://archive.ubuntu.com/ubuntu focal/main amd64 libhttp-cookies-perl all 6.08-1 [18.3 kB]
-Get:117 http://archive.ubuntu.com/ubuntu focal/main amd64 libhttp-daemon-perl all 6.06-1 [21.4 kB]
-Get:118 http://archive.ubuntu.com/ubuntu focal/main amd64 libhttp-negotiate-perl all 6.01-1 [12.5 kB]
-Get:119 http://archive.ubuntu.com/ubuntu focal/main amd64 perl-openssl-defaults amd64 4 [7,192 B]
-Get:120 http://archive.ubuntu.com/ubuntu focal/main amd64 libnet-ssleay-perl amd64 1.88-2ubuntu1 [291 kB]
-Get:121 http://archive.ubuntu.com/ubuntu focal/main amd64 libio-socket-ssl-perl all 2.067-1 [176 kB]
-Get:122 http://archive.ubuntu.com/ubuntu focal/main amd64 libjs-jquery all 3.3.1~dfsg-3 [329 kB]
-Get:123 http://archive.ubuntu.com/ubuntu focal/main amd64 libnet-http-perl all 6.19-1 [22.8 kB]
-Get:124 http://archive.ubuntu.com/ubuntu focal/main amd64 libtry-tiny-perl all 0.30-1 [20.5 kB]
-Get:125 http://archive.ubuntu.com/ubuntu focal/main amd64 libwww-robotrules-perl all 6.02-1 [12.6 kB]
-Get:126 http://archive.ubuntu.com/ubuntu focal/main amd64 libwww-perl all 6.43-1 [140 kB]
-Get:127 http://archive.ubuntu.com/ubuntu focal/main amd64 liblwp-protocol-https-perl all 6.07-2ubuntu2 [8,560 B]
-Get:128 http://archive.ubuntu.com/ubuntu focal/main amd64 libnet-smtp-ssl-perl all 1.04-1 [5,948 B]
-Get:129 http://archive.ubuntu.com/ubuntu focal/main amd64 libmailtools-perl all 2.21-1 [80.7 kB]
-Get:130 http://archive.ubuntu.com/ubuntu focal/main amd64 libnspr4 amd64 2:4.25-1 [107 kB]
-Get:131 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libnss3 amd64 2:3.49.1-1ubuntu1.7 [1,256 kB]
-Get:132 http://archive.ubuntu.com/ubuntu focal/main amd64 libpoppler97 amd64 0.86.1-0ubuntu1 [915 kB]
-Get:133 http://archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp0v5 amd64 0.86.1-0ubuntu1 [35.6 kB]
-Get:134 http://archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-dev amd64 0.86.1-0ubuntu1 [5,336 B]
-Get:135 http://archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp-dev amd64 0.86.1-0ubuntu1 [10.4 kB]
-Get:136 http://archive.ubuntu.com/ubuntu focal/main amd64 libptexenc1 amd64 2019.20190605.51237-3build2 [35.5 kB]
-Get:137 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libqpdf26 amd64 9.1.1-1ubuntu0.1 [421 kB]
-Get:138 http://archive.ubuntu.com/ubuntu focal/main amd64 rubygems-integration all 1.16 [5,092 B]
-Get:139 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 ruby2.7 amd64 2.7.0-5ubuntu1.7 [95.6 kB]
-Get:140 http://archive.ubuntu.com/ubuntu focal/main amd64 ruby amd64 1:2.7+1 [5,412 B]
-Get:141 http://archive.ubuntu.com/ubuntu focal/main amd64 rake all 13.0.1-4 [61.6 kB]
-Get:142 http://archive.ubuntu.com/ubuntu focal/main amd64 ruby-minitest all 5.13.0-1 [40.9 kB]
-Get:143 http://archive.ubuntu.com/ubuntu focal/main amd64 ruby-net-telnet all 0.1.1-2 [12.6 kB]
-Get:144 http://archive.ubuntu.com/ubuntu focal/main amd64 ruby-power-assert all 1.1.7-1 [11.4 kB]
-Get:145 http://archive.ubuntu.com/ubuntu focal/main amd64 ruby-test-unit all 3.3.5-1 [73.2 kB]
-Get:146 http://archive.ubuntu.com/ubuntu focal/main amd64 ruby-xmlrpc all 0.3.0-2 [23.8 kB]
-Get:147 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libruby2.7 amd64 2.7.0-5ubuntu1.7 [3,533 kB]
-Get:148 http://archive.ubuntu.com/ubuntu focal/main amd64 libsynctex2 amd64 2019.20190605.51237-3build2 [55.0 kB]
-Get:149 http://archive.ubuntu.com/ubuntu focal/universe amd64 libteckit0 amd64 2.5.8+ds2-5ubuntu2 [320 kB]
-Get:150 http://archive.ubuntu.com/ubuntu focal/main amd64 libtexlua53 amd64 2019.20190605.51237-3build2 [105 kB]
-Get:151 http://archive.ubuntu.com/ubuntu focal/main amd64 libtexluajit2 amd64 2019.20190605.51237-3build2 [235 kB]
-Get:152 http://archive.ubuntu.com/ubuntu focal/universe amd64 libtext-unidecode-perl all 1.30-1 [99.0 kB]
-Get:153 http://archive.ubuntu.com/ubuntu focal/main amd64 libutempter0 amd64 1.1.6-4 [8,256 B]
-Get:154 http://archive.ubuntu.com/ubuntu focal/main amd64 libwayland-client0 amd64 1.18.0-1 [23.9 kB]
-Get:155 http://archive.ubuntu.com/ubuntu focal/main amd64 libxmu6 amd64 2:1.1.3-0ubuntu1 [45.8 kB]
-Get:156 http://archive.ubuntu.com/ubuntu focal/main amd64 libxpm4 amd64 1:3.5.12-1 [34.0 kB]
-Get:157 http://archive.ubuntu.com/ubuntu focal/main amd64 libxaw7 amd64 2:1.0.13-1 [173 kB]
-Get:158 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb-randr0 amd64 1.14-2 [16.3 kB]
-Get:159 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb-shape0 amd64 1.14-2 [5,928 B]
-Get:160 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcomposite1 amd64 1:0.4.5-1 [6,976 B]
-Get:161 http://archive.ubuntu.com/ubuntu focal/main amd64 libxi6 amd64 2:1.7.10-0ubuntu1 [29.9 kB]
-Get:162 http://archive.ubuntu.com/ubuntu focal/main amd64 libxinerama1 amd64 2:1.1.4-2 [6,904 B]
-Get:163 http://archive.ubuntu.com/ubuntu focal/main amd64 libxkbfile1 amd64 1:1.1.0-1 [65.3 kB]
-Get:164 http://archive.ubuntu.com/ubuntu focal/main amd64 libxml-namespacesupport-perl all 1.12-1 [13.2 kB]
-Get:165 http://archive.ubuntu.com/ubuntu focal/main amd64 libxml-sax-base-perl all 1.09-1 [18.8 kB]
-Get:166 http://archive.ubuntu.com/ubuntu focal/main amd64 libxml-sax-perl all 1.02+dfsg-1 [56.2 kB]
-Get:167 http://archive.ubuntu.com/ubuntu focal/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1build1 [320 kB]
-Get:168 http://archive.ubuntu.com/ubuntu focal/main amd64 libxml-parser-perl amd64 2.46-1 [193 kB]
-Get:169 http://archive.ubuntu.com/ubuntu focal/main amd64 libxml-sax-expat-perl all 0.51-1 [10.5 kB]
-Get:170 http://archive.ubuntu.com/ubuntu focal/main amd64 libxrandr2 amd64 2:1.5.2-0ubuntu1 [18.5 kB]
-Get:171 http://archive.ubuntu.com/ubuntu focal/main amd64 libxtst6 amd64 2:1.2.3-1 [12.8 kB]
-Get:172 http://archive.ubuntu.com/ubuntu focal/main amd64 libxv1 amd64 2:1.0.11-1 [10.7 kB]
-Get:173 http://archive.ubuntu.com/ubuntu focal/main amd64 libxxf86dga1 amd64 2:1.1.5-0ubuntu1 [12.0 kB]
-Get:174 http://archive.ubuntu.com/ubuntu focal/universe amd64 libzzip-0-13 amd64 0.13.62-3.2ubuntu1 [26.2 kB]
-Get:175 http://archive.ubuntu.com/ubuntu focal/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu1 [573 kB]
-Get:176 http://archive.ubuntu.com/ubuntu focal/main amd64 xfonts-utils amd64 1:7.7+6 [91.5 kB]
-Get:177 http://archive.ubuntu.com/ubuntu focal/universe amd64 lmodern all 2.004.5-6 [9,474 kB]
-Get:178 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-vulkan-drivers amd64 21.2.6-0ubuntu0.1~20.04.2 [5,788 kB]
-Get:179 http://archive.ubuntu.com/ubuntu focal/universe amd64 pandoc-data all 2.5-3build2 [76.0 kB]
-Get:180 http://archive.ubuntu.com/ubuntu focal/universe amd64 pandoc amd64 2.5-3build2 [15.4 MB]
-Get:181 http://archive.ubuntu.com/ubuntu focal/universe amd64 preview-latex-style all 11.91-2ubuntu2 [184 kB]
-Get:182 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 qpdf amd64 9.1.1-1ubuntu0.1 [475 kB]
-Get:183 http://archive.ubuntu.com/ubuntu focal/main amd64 t1utils amd64 1.41-3 [56.1 kB]
-Get:184 http://archive.ubuntu.com/ubuntu focal/main amd64 tcl8.6 amd64 8.6.10+dfsg-1 [14.8 kB]
-Get:185 http://archive.ubuntu.com/ubuntu focal/universe amd64 tcl amd64 8.6.9+1 [5,112 B]
-Get:186 http://archive.ubuntu.com/ubuntu focal/universe amd64 teckit amd64 2.5.8+ds2-5ubuntu2 [687 kB]
-Get:187 http://archive.ubuntu.com/ubuntu focal/universe amd64 tex-gyre all 20180621-3 [6,209 kB]
-Get:188 http://archive.ubuntu.com/ubuntu focal/universe amd64 texinfo amd64 6.7.0.dfsg.2-5 [1,375 kB]
-Get:189 http://archive.ubuntu.com/ubuntu focal/universe amd64 texlive-binaries amd64 2019.20190605.51237-3build2 [8,041 kB]
-Get:190 http://archive.ubuntu.com/ubuntu focal/universe amd64 texlive-base all 2019.20200218-1 [20.8 MB]
-Get:191 http://archive.ubuntu.com/ubuntu focal/universe amd64 texlive-fonts-extra all 2019.202000218-1 [460 MB]
-Get:192 http://archive.ubuntu.com/ubuntu focal/universe amd64 fonts-stix all 1.1.1-4 [591 kB]
-Get:193 http://archive.ubuntu.com/ubuntu focal/universe amd64 texlive-fonts-extra-links all 2019.202000218-1 [20.3 kB]
-Get:194 http://archive.ubuntu.com/ubuntu focal/universe amd64 texlive-fonts-recommended all 2019.20200218-1 [4,972 kB]
-Get:195 http://archive.ubuntu.com/ubuntu focal/universe amd64 texlive-lang-greek all 2019.20200218-1 [77.3 MB]
-Get:196 http://archive.ubuntu.com/ubuntu focal/universe amd64 texlive-latex-base all 2019.20200218-1 [990 kB]
-Get:197 http://archive.ubuntu.com/ubuntu focal/universe amd64 libfontbox-java all 1:1.8.16-2 [207 kB]
-Get:198 http://archive.ubuntu.com/ubuntu focal/universe amd64 libpdfbox-java all 1:1.8.16-2 [5,199 kB]
-Get:199 http://archive.ubuntu.com/ubuntu focal/universe amd64 texlive-latex-recommended all 2019.20200218-1 [15.7 MB]
-Get:200 http://archive.ubuntu.com/ubuntu focal/universe amd64 texlive-pictures all 2019.20200218-1 [4,492 kB]
-Get:201 http://archive.ubuntu.com/ubuntu focal/universe amd64 texlive-latex-extra all 2019.202000218-1 [12.5 MB]
-Get:202 http://archive.ubuntu.com/ubuntu focal/universe amd64 texlive-luatex all 2019.20200218-1 [10.5 MB]
-Get:203 http://archive.ubuntu.com/ubuntu focal/universe amd64 texlive-plain-generic all 2019.202000218-1 [24.6 MB]
-Get:204 http://archive.ubuntu.com/ubuntu focal/universe amd64 texlive-science all 2019.202000218-1 [3,217 kB]
-Get:205 http://archive.ubuntu.com/ubuntu focal/universe amd64 tipa all 2:1.3-20 [2,978 kB]
-Get:206 http://archive.ubuntu.com/ubuntu focal/universe amd64 texlive-xetex all 2019.20200218-1 [14.6 MB]
-Get:207 http://archive.ubuntu.com/ubuntu focal/main amd64 tk8.6 amd64 8.6.10-1 [12.5 kB]
-Get:208 http://archive.ubuntu.com/ubuntu focal/universe amd64 tk amd64 8.6.9+1 [3,240 B]
-Get:209 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libglvnd0 amd64 1.3.2-1~ubuntu0.20.04.2 [48.1 kB]
-Get:210 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libglx0 amd64 1.3.2-1~ubuntu0.20.04.2 [32.5 kB]
-Get:211 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libgl1 amd64 1.3.2-1~ubuntu0.20.04.2 [85.8 kB]
-Get:212 http://archive.ubuntu.com/ubuntu focal/main amd64 x11-utils amd64 7.7+5 [199 kB]
-Get:213 http://archive.ubuntu.com/ubuntu focal/main amd64 xbitmaps all 1.1.1-2 [28.1 kB]
-Get:214 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 xterm amd64 353-1ubuntu1.20.04.2 [765 kB]
-Get:215 http://archive.ubuntu.com/ubuntu focal/main amd64 libauthen-sasl-perl all 2.1600-1 [48.7 kB]
-Get:216 http://archive.ubuntu.com/ubuntu focal/universe amd64 libghc-pandoc-citeproc-data all 0.15.0.1-1build4 [51.1 kB]
-Get:217 http://archive.ubuntu.com/ubuntu focal/universe amd64 pandoc-citeproc amd64 0.15.0.1-1build4 [12.9 MB]
-Fetched 834 MB in 9min 31s (1,461 kB/s)
-Selecting previously unselected package fonts-droid-fallback.
-(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 20551 files and directories currently installed.)
-Preparing to unpack .../fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ...
-Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ...
-Selecting previously unselected package fonts-lato.
-Preparing to unpack .../fonts-lato_2.0-2_all.deb ...
-Unpacking fonts-lato (2.0-2) ...
-Selecting previously unselected package poppler-data.
-Preparing to unpack .../poppler-data_0.4.9-2_all.deb ...
-Unpacking poppler-data (0.4.9-2) ...
-Selecting previously unselected package tex-common.
-Preparing to unpack .../tex-common_6.13_all.deb ...
-Unpacking tex-common (6.13) ...
-Preparing to unpack .../libuuid1_2.34-0.1ubuntu9.3_amd64.deb ...
-Unpacking libuuid1:amd64 (2.34-0.1ubuntu9.3) over (2.34-0.1ubuntu9.1) ...
-Setting up libuuid1:amd64 (2.34-0.1ubuntu9.3) ...
-(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 21158 files and directories currently installed.)
-Preparing to unpack .../000-libexpat1_2.2.9-1ubuntu0.4_amd64.deb ...
-Unpacking libexpat1:amd64 (2.2.9-1ubuntu0.4) over (2.2.9-1ubuntu0.2) ...
-Selecting previously unselected package netbase.
-Preparing to unpack .../001-netbase_6.1_all.deb ...
-Unpacking netbase (6.1) ...
-Selecting previously unselected package libdrm-common.
-Preparing to unpack .../002-libdrm-common_2.4.107-8ubuntu1~20.04.2_all.deb ...
-Unpacking libdrm-common (2.4.107-8ubuntu1~20.04.2) ...
-Selecting previously unselected package libdrm2:amd64.
-Preparing to unpack .../003-libdrm2_2.4.107-8ubuntu1~20.04.2_amd64.deb ...
-Unpacking libdrm2:amd64 (2.4.107-8ubuntu1~20.04.2) ...
-Selecting previously unselected package libedit2:amd64.
-Preparing to unpack .../004-libedit2_3.1-20191231-1_amd64.deb ...
-Unpacking libedit2:amd64 (3.1-20191231-1) ...
-Selecting previously unselected package fonts-urw-base35.
-Preparing to unpack .../005-fonts-urw-base35_20170801.1-3_all.deb ...
-Unpacking fonts-urw-base35 (20170801.1-3) ...
-Selecting previously unselected package libgs9-common.
-Preparing to unpack .../006-libgs9-common_9.50~dfsg-5ubuntu4.5_all.deb ...
-Unpacking libgs9-common (9.50~dfsg-5ubuntu4.5) ...
-Selecting previously unselected package libavahi-common-data:amd64.
-Preparing to unpack .../007-libavahi-common-data_0.7-4ubuntu7.1_amd64.deb ...
-Unpacking libavahi-common-data:amd64 (0.7-4ubuntu7.1) ...
-Selecting previously unselected package libavahi-common3:amd64.
-Preparing to unpack .../008-libavahi-common3_0.7-4ubuntu7.1_amd64.deb ...
-Unpacking libavahi-common3:amd64 (0.7-4ubuntu7.1) ...
-Selecting previously unselected package libavahi-client3:amd64.
-Preparing to unpack .../009-libavahi-client3_0.7-4ubuntu7.1_amd64.deb ...
-Unpacking libavahi-client3:amd64 (0.7-4ubuntu7.1) ...
-Selecting previously unselected package libcups2:amd64.
-Preparing to unpack .../010-libcups2_2.3.1-9ubuntu1.2_amd64.deb ...
-Unpacking libcups2:amd64 (2.3.1-9ubuntu1.2) ...
-Selecting previously unselected package libidn11:amd64.
-Preparing to unpack .../011-libidn11_1.33-2.2ubuntu2_amd64.deb ...
-Unpacking libidn11:amd64 (1.33-2.2ubuntu2) ...
-Selecting previously unselected package libijs-0.35:amd64.
-Preparing to unpack .../012-libijs-0.35_0.35-15_amd64.deb ...
-Unpacking libijs-0.35:amd64 (0.35-15) ...
-Selecting previously unselected package libjbig2dec0:amd64.
-Preparing to unpack .../013-libjbig2dec0_0.18-1ubuntu1_amd64.deb ...
-Unpacking libjbig2dec0:amd64 (0.18-1ubuntu1) ...
-Selecting previously unselected package liblcms2-2:amd64.
-Preparing to unpack .../014-liblcms2-2_2.9-4_amd64.deb ...
-Unpacking liblcms2-2:amd64 (2.9-4) ...
-Selecting previously unselected package libopenjp2-7:amd64.
-Preparing to unpack .../015-libopenjp2-7_2.3.1-1ubuntu4.20.04.1_amd64.deb ...
-Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ...
-Selecting previously unselected package libgs9:amd64.
-Preparing to unpack .../016-libgs9_9.50~dfsg-5ubuntu4.5_amd64.deb ...
-Unpacking libgs9:amd64 (9.50~dfsg-5ubuntu4.5) ...
-Selecting previously unselected package libkpathsea6:amd64.
-Preparing to unpack .../017-libkpathsea6_2019.20190605.51237-3build2_amd64.deb ...
-Unpacking libkpathsea6:amd64 (2019.20190605.51237-3build2) ...
-Selecting previously unselected package libwoff1:amd64.
-Preparing to unpack .../018-libwoff1_1.0.2-1build2_amd64.deb ...
-Unpacking libwoff1:amd64 (1.0.2-1build2) ...
-Selecting previously unselected package dvisvgm.
-Preparing to unpack .../019-dvisvgm_2.8.1-1build1_amd64.deb ...
-Unpacking dvisvgm (2.8.1-1build1) ...
-Selecting previously unselected package fonts-adf-accanthis.
-Preparing to unpack .../020-fonts-adf-accanthis_0.20190904-1.1_all.deb ...
-Unpacking fonts-adf-accanthis (0.20190904-1.1) ...
-Selecting previously unselected package fonts-adf-berenis.
-Preparing to unpack .../021-fonts-adf-berenis_0.20190904-1.1_all.deb ...
-Unpacking fonts-adf-berenis (0.20190904-1.1) ...
-Selecting previously unselected package fonts-adf-gillius.
-Preparing to unpack .../022-fonts-adf-gillius_0.20190904-1.1_all.deb ...
-Unpacking fonts-adf-gillius (0.20190904-1.1) ...
-Selecting previously unselected package fonts-adf-universalis.
-Preparing to unpack .../023-fonts-adf-universalis_0.20190904-1.1_all.deb ...
-Unpacking fonts-adf-universalis (0.20190904-1.1) ...
-Selecting previously unselected package fonts-cabin.
-Preparing to unpack .../024-fonts-cabin_1.5-3_all.deb ...
-Unpacking fonts-cabin (1.5-3) ...
-Selecting previously unselected package fonts-cantarell.
-Preparing to unpack .../025-fonts-cantarell_0.111-2_all.deb ...
-Unpacking fonts-cantarell (0.111-2) ...
-Selecting previously unselected package fonts-comfortaa.
-Preparing to unpack .../026-fonts-comfortaa_3.001-3_all.deb ...
-Unpacking fonts-comfortaa (3.001-3) ...
-Selecting previously unselected package fonts-croscore.
-Preparing to unpack .../027-fonts-croscore_20200323-1build1~ubuntu20.04.1_all.deb ...
-Unpacking fonts-croscore (20200323-1build1~ubuntu20.04.1) ...
-Selecting previously unselected package fonts-crosextra-caladea.
-Preparing to unpack .../028-fonts-crosextra-caladea_20130214-2_all.deb ...
-Unpacking fonts-crosextra-caladea (20130214-2) ...
-Selecting previously unselected package fonts-crosextra-carlito.
-Preparing to unpack .../029-fonts-crosextra-carlito_20130920-1_all.deb ...
-Unpacking fonts-crosextra-carlito (20130920-1) ...
-Selecting previously unselected package fonts-dejavu-extra.
-Preparing to unpack .../030-fonts-dejavu-extra_2.37-1_all.deb ...
-Unpacking fonts-dejavu-extra (2.37-1) ...
-Selecting previously unselected package fonts-ebgaramond.
-Preparing to unpack .../031-fonts-ebgaramond_0.016-1ubuntu1_all.deb ...
-Unpacking fonts-ebgaramond (0.016-1ubuntu1) ...
-Selecting previously unselected package fonts-ebgaramond-extra.
-Preparing to unpack .../032-fonts-ebgaramond-extra_0.016-1ubuntu1_all.deb ...
-Unpacking fonts-ebgaramond-extra (0.016-1ubuntu1) ...
-Selecting previously unselected package fonts-font-awesome.
-Preparing to unpack .../033-fonts-font-awesome_5.0.10+really4.7.0~dfsg-1_all.deb ...
-Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ...
-Selecting previously unselected package fonts-freefont-otf.
-Preparing to unpack .../034-fonts-freefont-otf_20120503-10_all.deb ...
-Unpacking fonts-freefont-otf (20120503-10) ...
-Selecting previously unselected package fonts-freefont-ttf.
-Preparing to unpack .../035-fonts-freefont-ttf_20120503-10_all.deb ...
-Unpacking fonts-freefont-ttf (20120503-10) ...
-Selecting previously unselected package fonts-gfs-artemisia.
-Preparing to unpack .../036-fonts-gfs-artemisia_1.1-5_all.deb ...
-Unpacking fonts-gfs-artemisia (1.1-5) ...
-Selecting previously unselected package fonts-gfs-baskerville.
-Preparing to unpack .../037-fonts-gfs-baskerville_1.1-5_all.deb ...
-Unpacking fonts-gfs-baskerville (1.1-5) ...
-Selecting previously unselected package fonts-gfs-complutum.
-Preparing to unpack .../038-fonts-gfs-complutum_1.1-6_all.deb ...
-Unpacking fonts-gfs-complutum (1.1-6) ...
-Selecting previously unselected package fonts-gfs-didot.
-Preparing to unpack .../039-fonts-gfs-didot_1.1-6_all.deb ...
-Unpacking fonts-gfs-didot (1.1-6) ...
-Selecting previously unselected package fonts-gfs-neohellenic.
-Preparing to unpack .../040-fonts-gfs-neohellenic_1.1-6_all.deb ...
-Unpacking fonts-gfs-neohellenic (1.1-6) ...
-Selecting previously unselected package fonts-gfs-olga.
-Preparing to unpack .../041-fonts-gfs-olga_1.1-5_all.deb ...
-Unpacking fonts-gfs-olga (1.1-5) ...
-Selecting previously unselected package fonts-gfs-porson.
-Preparing to unpack .../042-fonts-gfs-porson_1.1-6_all.deb ...
-Unpacking fonts-gfs-porson (1.1-6) ...
-Selecting previously unselected package fonts-gfs-solomos.
-Preparing to unpack .../043-fonts-gfs-solomos_1.1-5_all.deb ...
-Unpacking fonts-gfs-solomos (1.1-5) ...
-Selecting previously unselected package fonts-go.
-Preparing to unpack .../044-fonts-go_0~20170330-1_all.deb ...
-Unpacking fonts-go (0~20170330-1) ...
-Selecting previously unselected package fonts-junicode.
-Preparing to unpack .../045-fonts-junicode_1.002-2_all.deb ...
-Unpacking fonts-junicode (1.002-2) ...
-Selecting previously unselected package fonts-linuxlibertine.
-Preparing to unpack .../046-fonts-linuxlibertine_5.3.0-4_all.deb ...
-Unpacking fonts-linuxlibertine (5.3.0-4) ...
-Selecting previously unselected package fonts-lmodern.
-Preparing to unpack .../047-fonts-lmodern_2.004.5-6_all.deb ...
-Unpacking fonts-lmodern (2.004.5-6) ...
-Selecting previously unselected package fonts-lobster.
-Preparing to unpack .../048-fonts-lobster_2.0-2_all.deb ...
-Unpacking fonts-lobster (2.0-2) ...
-Selecting previously unselected package fonts-lobstertwo.
-Preparing to unpack .../049-fonts-lobstertwo_2.0-2_all.deb ...
-Unpacking fonts-lobstertwo (2.0-2) ...
-Selecting previously unselected package fonts-noto-core.
-Preparing to unpack .../050-fonts-noto-core_20200323-1build1~ubuntu20.04.1_all.deb ...
-Unpacking fonts-noto-core (20200323-1build1~ubuntu20.04.1) ...
-Selecting previously unselected package fonts-noto-mono.
-Preparing to unpack .../051-fonts-noto-mono_20200323-1build1~ubuntu20.04.1_all.deb ...
-Unpacking fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ...
-Selecting previously unselected package fonts-oflb-asana-math.
-Preparing to unpack .../052-fonts-oflb-asana-math_000.907-6_all.deb ...
-Unpacking fonts-oflb-asana-math (000.907-6) ...
-Selecting previously unselected package fonts-open-sans.
-Preparing to unpack .../053-fonts-open-sans_1.11-1_all.deb ...
-Unpacking fonts-open-sans (1.11-1) ...
-Selecting previously unselected package fonts-roboto-unhinted.
-Preparing to unpack .../054-fonts-roboto-unhinted_2%3a0~20170802-3_all.deb ...
-Unpacking fonts-roboto-unhinted (2:0~20170802-3) ...
-Selecting previously unselected package fonts-sil-gentium.
-Preparing to unpack .../055-fonts-sil-gentium_20081126%3a1.03-2_all.deb ...
-Unpacking fonts-sil-gentium (20081126:1.03-2) ...
-Selecting previously unselected package fonts-sil-gentium-basic.
-Preparing to unpack .../056-fonts-sil-gentium-basic_1.102-1_all.deb ...
-Unpacking fonts-sil-gentium-basic (1.102-1) ...
-Selecting previously unselected package fonts-sil-gentiumplus.
-Preparing to unpack .../057-fonts-sil-gentiumplus_5.000-2_all.deb ...
-Unpacking fonts-sil-gentiumplus (5.000-2) ...
-Selecting previously unselected package fonts-sil-gentiumplus-compact.
-Preparing to unpack .../058-fonts-sil-gentiumplus-compact_5.000-2_all.deb ...
-Unpacking fonts-sil-gentiumplus-compact (5.000-2) ...
-Selecting previously unselected package fonts-texgyre.
-Preparing to unpack .../059-fonts-texgyre_20180621-3_all.deb ...
-Unpacking fonts-texgyre (20180621-3) ...
-Selecting previously unselected package ghostscript.
-Preparing to unpack .../060-ghostscript_9.50~dfsg-5ubuntu4.5_amd64.deb ...
-Unpacking ghostscript (9.50~dfsg-5ubuntu4.5) ...
-Selecting previously unselected package javascript-common.
-Preparing to unpack .../061-javascript-common_11_all.deb ...
-Unpacking javascript-common (11) ...
-Selecting previously unselected package libapache-pom-java.
-Preparing to unpack .../062-libapache-pom-java_18-1_all.deb ...
-Unpacking libapache-pom-java (18-1) ...
-Selecting previously unselected package libbibutils6.
-Preparing to unpack .../063-libbibutils6_6.2-1_amd64.deb ...
-Unpacking libbibutils6 (6.2-1) ...
-Selecting previously unselected package libcommons-parent-java.
-Preparing to unpack .../064-libcommons-parent-java_43-1_all.deb ...
-Unpacking libcommons-parent-java (43-1) ...
-Selecting previously unselected package libcommons-logging-java.
-Preparing to unpack .../065-libcommons-logging-java_1.2-2_all.deb ...
-Unpacking libcommons-logging-java (1.2-2) ...
-Selecting previously unselected package libdata-dump-perl.
-Preparing to unpack .../066-libdata-dump-perl_1.23-1_all.deb ...
-Unpacking libdata-dump-perl (1.23-1) ...
-Selecting previously unselected package libdrm-amdgpu1:amd64.
-Preparing to unpack .../067-libdrm-amdgpu1_2.4.107-8ubuntu1~20.04.2_amd64.deb ...
-Unpacking libdrm-amdgpu1:amd64 (2.4.107-8ubuntu1~20.04.2) ...
-Selecting previously unselected package libpciaccess0:amd64.
-Preparing to unpack .../068-libpciaccess0_0.16-0ubuntu1_amd64.deb ...
-Unpacking libpciaccess0:amd64 (0.16-0ubuntu1) ...
-Selecting previously unselected package libdrm-intel1:amd64.
-Preparing to unpack .../069-libdrm-intel1_2.4.107-8ubuntu1~20.04.2_amd64.deb ...
-Unpacking libdrm-intel1:amd64 (2.4.107-8ubuntu1~20.04.2) ...
-Selecting previously unselected package libdrm-nouveau2:amd64.
-Preparing to unpack .../070-libdrm-nouveau2_2.4.107-8ubuntu1~20.04.2_amd64.deb ...
-Unpacking libdrm-nouveau2:amd64 (2.4.107-8ubuntu1~20.04.2) ...
-Selecting previously unselected package libdrm-radeon1:amd64.
-Preparing to unpack .../071-libdrm-radeon1_2.4.107-8ubuntu1~20.04.2_amd64.deb ...
-Unpacking libdrm-radeon1:amd64 (2.4.107-8ubuntu1~20.04.2) ...
-Selecting previously unselected package libencode-locale-perl.
-Preparing to unpack .../072-libencode-locale-perl_1.05-1_all.deb ...
-Unpacking libencode-locale-perl (1.05-1) ...
-Selecting previously unselected package libexpat1-dev:amd64.
-Preparing to unpack .../073-libexpat1-dev_2.2.9-1ubuntu0.4_amd64.deb ...
-Unpacking libexpat1-dev:amd64 (2.2.9-1ubuntu0.4) ...
-Selecting previously unselected package libtimedate-perl.
-Preparing to unpack .../074-libtimedate-perl_2.3200-1_all.deb ...
-Unpacking libtimedate-perl (2.3200-1) ...
-Selecting previously unselected package libhttp-date-perl.
-Preparing to unpack .../075-libhttp-date-perl_6.05-1_all.deb ...
-Unpacking libhttp-date-perl (6.05-1) ...
-Selecting previously unselected package libfile-listing-perl.
-Preparing to unpack .../076-libfile-listing-perl_6.04-1_all.deb ...
-Unpacking libfile-listing-perl (6.04-1) ...
-Selecting previously unselected package libfont-afm-perl.
-Preparing to unpack .../077-libfont-afm-perl_1.20-2_all.deb ...
-Unpacking libfont-afm-perl (1.20-2) ...
-Selecting previously unselected package libfreetype-dev:amd64.
-Preparing to unpack .../078-libfreetype-dev_2.10.1-2ubuntu0.1_amd64.deb ...
-Unpacking libfreetype-dev:amd64 (2.10.1-2ubuntu0.1) ...
-Selecting previously unselected package libfreetype6-dev:amd64.
-Preparing to unpack .../079-libfreetype6-dev_2.10.1-2ubuntu0.1_amd64.deb ...
-Unpacking libfreetype6-dev:amd64 (2.10.1-2ubuntu0.1) ...
-Selecting previously unselected package uuid-dev:amd64.
-Preparing to unpack .../080-uuid-dev_2.34-0.1ubuntu9.3_amd64.deb ...
-Unpacking uuid-dev:amd64 (2.34-0.1ubuntu9.3) ...
-Selecting previously unselected package libfontconfig1-dev:amd64.
-Preparing to unpack .../081-libfontconfig1-dev_2.13.1-2ubuntu3_amd64.deb ...
-Unpacking libfontconfig1-dev:amd64 (2.13.1-2ubuntu3) ...
-Selecting previously unselected package libfontenc1:amd64.
-Preparing to unpack .../082-libfontenc1_1%3a1.1.4-0ubuntu1_amd64.deb ...
-Unpacking libfontenc1:amd64 (1:1.1.4-0ubuntu1) ...
-Selecting previously unselected package libglapi-mesa:amd64.
-Preparing to unpack .../083-libglapi-mesa_21.2.6-0ubuntu0.1~20.04.2_amd64.deb ...
-Unpacking libglapi-mesa:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
-Selecting previously unselected package libllvm12:amd64.
-Preparing to unpack .../084-libllvm12_1%3a12.0.0-3ubuntu1~20.04.5_amd64.deb ...
-Unpacking libllvm12:amd64 (1:12.0.0-3ubuntu1~20.04.5) ...
-Selecting previously unselected package libsensors-config.
-Preparing to unpack .../085-libsensors-config_1%3a3.6.0-2ubuntu1.1_all.deb ...
-Unpacking libsensors-config (1:3.6.0-2ubuntu1.1) ...
-Selecting previously unselected package libsensors5:amd64.
-Preparing to unpack .../086-libsensors5_1%3a3.6.0-2ubuntu1.1_amd64.deb ...
-Unpacking libsensors5:amd64 (1:3.6.0-2ubuntu1.1) ...
-Selecting previously unselected package libvulkan1:amd64.
-Preparing to unpack .../087-libvulkan1_1.2.131.2-1_amd64.deb ...
-Unpacking libvulkan1:amd64 (1.2.131.2-1) ...
-Selecting previously unselected package libgl1-mesa-dri:amd64.
-Preparing to unpack .../088-libgl1-mesa-dri_21.2.6-0ubuntu0.1~20.04.2_amd64.deb ...
-Unpacking libgl1-mesa-dri:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
-Selecting previously unselected package libx11-xcb1:amd64.
-Preparing to unpack .../089-libx11-xcb1_2%3a1.6.9-2ubuntu1.2_amd64.deb ...
-Unpacking libx11-xcb1:amd64 (2:1.6.9-2ubuntu1.2) ...
-Selecting previously unselected package libxcb-dri2-0:amd64.
-Preparing to unpack .../090-libxcb-dri2-0_1.14-2_amd64.deb ...
-Unpacking libxcb-dri2-0:amd64 (1.14-2) ...
-Selecting previously unselected package libxcb-dri3-0:amd64.
-Preparing to unpack .../091-libxcb-dri3-0_1.14-2_amd64.deb ...
-Unpacking libxcb-dri3-0:amd64 (1.14-2) ...
-Selecting previously unselected package libxcb-glx0:amd64.
-Preparing to unpack .../092-libxcb-glx0_1.14-2_amd64.deb ...
-Unpacking libxcb-glx0:amd64 (1.14-2) ...
-Selecting previously unselected package libxcb-present0:amd64.
-Preparing to unpack .../093-libxcb-present0_1.14-2_amd64.deb ...
-Unpacking libxcb-present0:amd64 (1.14-2) ...
-Selecting previously unselected package libxcb-sync1:amd64.
-Preparing to unpack .../094-libxcb-sync1_1.14-2_amd64.deb ...
-Unpacking libxcb-sync1:amd64 (1.14-2) ...
-Selecting previously unselected package libxcb-xfixes0:amd64.
-Preparing to unpack .../095-libxcb-xfixes0_1.14-2_amd64.deb ...
-Unpacking libxcb-xfixes0:amd64 (1.14-2) ...
-Selecting previously unselected package libxfixes3:amd64.
-Preparing to unpack .../096-libxfixes3_1%3a5.0.3-2_amd64.deb ...
-Unpacking libxfixes3:amd64 (1:5.0.3-2) ...
-Selecting previously unselected package libxshmfence1:amd64.
-Preparing to unpack .../097-libxshmfence1_1.3-1_amd64.deb ...
-Unpacking libxshmfence1:amd64 (1.3-1) ...
-Selecting previously unselected package libxxf86vm1:amd64.
-Preparing to unpack .../098-libxxf86vm1_1%3a1.1.4-1build1_amd64.deb ...
-Unpacking libxxf86vm1:amd64 (1:1.1.4-1build1) ...
-Selecting previously unselected package libglx-mesa0:amd64.
-Preparing to unpack .../099-libglx-mesa0_21.2.6-0ubuntu0.1~20.04.2_amd64.deb ...
-Unpacking libglx-mesa0:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
-Selecting previously unselected package libharfbuzz-icu0:amd64.
-Preparing to unpack .../100-libharfbuzz-icu0_2.6.4-1ubuntu4_amd64.deb ...
-Unpacking libharfbuzz-icu0:amd64 (2.6.4-1ubuntu4) ...
-Selecting previously unselected package libhtml-tagset-perl.
-Preparing to unpack .../101-libhtml-tagset-perl_3.20-4_all.deb ...
-Unpacking libhtml-tagset-perl (3.20-4) ...
-Selecting previously unselected package liburi-perl.
-Preparing to unpack .../102-liburi-perl_1.76-2_all.deb ...
-Unpacking liburi-perl (1.76-2) ...
-Selecting previously unselected package libhtml-parser-perl.
-Preparing to unpack .../103-libhtml-parser-perl_3.72-5_amd64.deb ...
-Unpacking libhtml-parser-perl (3.72-5) ...
-Selecting previously unselected package libio-html-perl.
-Preparing to unpack .../104-libio-html-perl_1.001-1_all.deb ...
-Unpacking libio-html-perl (1.001-1) ...
-Selecting previously unselected package liblwp-mediatypes-perl.
-Preparing to unpack .../105-liblwp-mediatypes-perl_6.04-1_all.deb ...
-Unpacking liblwp-mediatypes-perl (6.04-1) ...
-Selecting previously unselected package libhttp-message-perl.
-Preparing to unpack .../106-libhttp-message-perl_6.22-1_all.deb ...
-Unpacking libhttp-message-perl (6.22-1) ...
-Selecting previously unselected package libhtml-form-perl.
-Preparing to unpack .../107-libhtml-form-perl_6.07-1_all.deb ...
-Unpacking libhtml-form-perl (6.07-1) ...
-Selecting previously unselected package libhtml-tree-perl.
-Preparing to unpack .../108-libhtml-tree-perl_5.07-2_all.deb ...
-Unpacking libhtml-tree-perl (5.07-2) ...
-Selecting previously unselected package libhtml-format-perl.
-Preparing to unpack .../109-libhtml-format-perl_2.12-1_all.deb ...
-Unpacking libhtml-format-perl (2.12-1) ...
-Selecting previously unselected package libhttp-cookies-perl.
-Preparing to unpack .../110-libhttp-cookies-perl_6.08-1_all.deb ...
-Unpacking libhttp-cookies-perl (6.08-1) ...
-Selecting previously unselected package libhttp-daemon-perl.
-Preparing to unpack .../111-libhttp-daemon-perl_6.06-1_all.deb ...
-Unpacking libhttp-daemon-perl (6.06-1) ...
-Selecting previously unselected package libhttp-negotiate-perl.
-Preparing to unpack .../112-libhttp-negotiate-perl_6.01-1_all.deb ...
-Unpacking libhttp-negotiate-perl (6.01-1) ...
-Selecting previously unselected package perl-openssl-defaults:amd64.
-Preparing to unpack .../113-perl-openssl-defaults_4_amd64.deb ...
-Unpacking perl-openssl-defaults:amd64 (4) ...
-Selecting previously unselected package libnet-ssleay-perl.
-Preparing to unpack .../114-libnet-ssleay-perl_1.88-2ubuntu1_amd64.deb ...
-Unpacking libnet-ssleay-perl (1.88-2ubuntu1) ...
-Selecting previously unselected package libio-socket-ssl-perl.
-Preparing to unpack .../115-libio-socket-ssl-perl_2.067-1_all.deb ...
-Unpacking libio-socket-ssl-perl (2.067-1) ...
-Selecting previously unselected package libjs-jquery.
-Preparing to unpack .../116-libjs-jquery_3.3.1~dfsg-3_all.deb ...
-Unpacking libjs-jquery (3.3.1~dfsg-3) ...
-Selecting previously unselected package libnet-http-perl.
-Preparing to unpack .../117-libnet-http-perl_6.19-1_all.deb ...
-Unpacking libnet-http-perl (6.19-1) ...
-Selecting previously unselected package libtry-tiny-perl.
-Preparing to unpack .../118-libtry-tiny-perl_0.30-1_all.deb ...
-Unpacking libtry-tiny-perl (0.30-1) ...
-Selecting previously unselected package libwww-robotrules-perl.
-Preparing to unpack .../119-libwww-robotrules-perl_6.02-1_all.deb ...
-Unpacking libwww-robotrules-perl (6.02-1) ...
-Selecting previously unselected package libwww-perl.
-Preparing to unpack .../120-libwww-perl_6.43-1_all.deb ...
-Unpacking libwww-perl (6.43-1) ...
-Selecting previously unselected package liblwp-protocol-https-perl.
-Preparing to unpack .../121-liblwp-protocol-https-perl_6.07-2ubuntu2_all.deb ...
-Unpacking liblwp-protocol-https-perl (6.07-2ubuntu2) ...
-Selecting previously unselected package libnet-smtp-ssl-perl.
-Preparing to unpack .../122-libnet-smtp-ssl-perl_1.04-1_all.deb ...
-Unpacking libnet-smtp-ssl-perl (1.04-1) ...
-Selecting previously unselected package libmailtools-perl.
-Preparing to unpack .../123-libmailtools-perl_2.21-1_all.deb ...
-Unpacking libmailtools-perl (2.21-1) ...
-Selecting previously unselected package libnspr4:amd64.
-Preparing to unpack .../124-libnspr4_2%3a4.25-1_amd64.deb ...
-Unpacking libnspr4:amd64 (2:4.25-1) ...
-Selecting previously unselected package libnss3:amd64.
-Preparing to unpack .../125-libnss3_2%3a3.49.1-1ubuntu1.7_amd64.deb ...
-Unpacking libnss3:amd64 (2:3.49.1-1ubuntu1.7) ...
-Selecting previously unselected package libpoppler97:amd64.
-Preparing to unpack .../126-libpoppler97_0.86.1-0ubuntu1_amd64.deb ...
-Unpacking libpoppler97:amd64 (0.86.1-0ubuntu1) ...
-Selecting previously unselected package libpoppler-cpp0v5:amd64.
-Preparing to unpack .../127-libpoppler-cpp0v5_0.86.1-0ubuntu1_amd64.deb ...
-Unpacking libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ...
-Selecting previously unselected package libpoppler-dev:amd64.
-Preparing to unpack .../128-libpoppler-dev_0.86.1-0ubuntu1_amd64.deb ...
-Unpacking libpoppler-dev:amd64 (0.86.1-0ubuntu1) ...
-Selecting previously unselected package libpoppler-cpp-dev:amd64.
-Preparing to unpack .../129-libpoppler-cpp-dev_0.86.1-0ubuntu1_amd64.deb ...
-Unpacking libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ...
-Selecting previously unselected package libptexenc1:amd64.
-Preparing to unpack .../130-libptexenc1_2019.20190605.51237-3build2_amd64.deb ...
-Unpacking libptexenc1:amd64 (2019.20190605.51237-3build2) ...
-Selecting previously unselected package libqpdf26:amd64.
-Preparing to unpack .../131-libqpdf26_9.1.1-1ubuntu0.1_amd64.deb ...
-Unpacking libqpdf26:amd64 (9.1.1-1ubuntu0.1) ...
-Selecting previously unselected package rubygems-integration.
-Preparing to unpack .../132-rubygems-integration_1.16_all.deb ...
-Unpacking rubygems-integration (1.16) ...
-Selecting previously unselected package ruby2.7.
-Preparing to unpack .../133-ruby2.7_2.7.0-5ubuntu1.7_amd64.deb ...
-Unpacking ruby2.7 (2.7.0-5ubuntu1.7) ...
-Selecting previously unselected package ruby.
-Preparing to unpack .../134-ruby_1%3a2.7+1_amd64.deb ...
-Unpacking ruby (1:2.7+1) ...
-Selecting previously unselected package rake.
-Preparing to unpack .../135-rake_13.0.1-4_all.deb ...
-Unpacking rake (13.0.1-4) ...
-Selecting previously unselected package ruby-minitest.
-Preparing to unpack .../136-ruby-minitest_5.13.0-1_all.deb ...
-Unpacking ruby-minitest (5.13.0-1) ...
-Selecting previously unselected package ruby-net-telnet.
-Preparing to unpack .../137-ruby-net-telnet_0.1.1-2_all.deb ...
-Unpacking ruby-net-telnet (0.1.1-2) ...
-Selecting previously unselected package ruby-power-assert.
-Preparing to unpack .../138-ruby-power-assert_1.1.7-1_all.deb ...
-Unpacking ruby-power-assert (1.1.7-1) ...
-Selecting previously unselected package ruby-test-unit.
-Preparing to unpack .../139-ruby-test-unit_3.3.5-1_all.deb ...
-Unpacking ruby-test-unit (3.3.5-1) ...
-Selecting previously unselected package ruby-xmlrpc.
-Preparing to unpack .../140-ruby-xmlrpc_0.3.0-2_all.deb ...
-Unpacking ruby-xmlrpc (0.3.0-2) ...
-Selecting previously unselected package libruby2.7:amd64.
-Preparing to unpack .../141-libruby2.7_2.7.0-5ubuntu1.7_amd64.deb ...
-Unpacking libruby2.7:amd64 (2.7.0-5ubuntu1.7) ...
-Selecting previously unselected package libsynctex2:amd64.
-Preparing to unpack .../142-libsynctex2_2019.20190605.51237-3build2_amd64.deb ...
-Unpacking libsynctex2:amd64 (2019.20190605.51237-3build2) ...
-Selecting previously unselected package libteckit0:amd64.
-Preparing to unpack .../143-libteckit0_2.5.8+ds2-5ubuntu2_amd64.deb ...
-Unpacking libteckit0:amd64 (2.5.8+ds2-5ubuntu2) ...
-Selecting previously unselected package libtexlua53:amd64.
-Preparing to unpack .../144-libtexlua53_2019.20190605.51237-3build2_amd64.deb ...
-Unpacking libtexlua53:amd64 (2019.20190605.51237-3build2) ...
-Selecting previously unselected package libtexluajit2:amd64.
-Preparing to unpack .../145-libtexluajit2_2019.20190605.51237-3build2_amd64.deb ...
-Unpacking libtexluajit2:amd64 (2019.20190605.51237-3build2) ...
-Selecting previously unselected package libtext-unidecode-perl.
-Preparing to unpack .../146-libtext-unidecode-perl_1.30-1_all.deb ...
-Unpacking libtext-unidecode-perl (1.30-1) ...
-Selecting previously unselected package libutempter0:amd64.
-Preparing to unpack .../147-libutempter0_1.1.6-4_amd64.deb ...
-Unpacking libutempter0:amd64 (1.1.6-4) ...
-Selecting previously unselected package libwayland-client0:amd64.
-Preparing to unpack .../148-libwayland-client0_1.18.0-1_amd64.deb ...
-Unpacking libwayland-client0:amd64 (1.18.0-1) ...
-Selecting previously unselected package libxmu6:amd64.
-Preparing to unpack .../149-libxmu6_2%3a1.1.3-0ubuntu1_amd64.deb ...
-Unpacking libxmu6:amd64 (2:1.1.3-0ubuntu1) ...
-Selecting previously unselected package libxpm4:amd64.
-Preparing to unpack .../150-libxpm4_1%3a3.5.12-1_amd64.deb ...
-Unpacking libxpm4:amd64 (1:3.5.12-1) ...
-Selecting previously unselected package libxaw7:amd64.
-Preparing to unpack .../151-libxaw7_2%3a1.0.13-1_amd64.deb ...
-Unpacking libxaw7:amd64 (2:1.0.13-1) ...
-Selecting previously unselected package libxcb-randr0:amd64.
-Preparing to unpack .../152-libxcb-randr0_1.14-2_amd64.deb ...
-Unpacking libxcb-randr0:amd64 (1.14-2) ...
-Selecting previously unselected package libxcb-shape0:amd64.
-Preparing to unpack .../153-libxcb-shape0_1.14-2_amd64.deb ...
-Unpacking libxcb-shape0:amd64 (1.14-2) ...
-Selecting previously unselected package libxcomposite1:amd64.
-Preparing to unpack .../154-libxcomposite1_1%3a0.4.5-1_amd64.deb ...
-Unpacking libxcomposite1:amd64 (1:0.4.5-1) ...
-Selecting previously unselected package libxi6:amd64.
-Preparing to unpack .../155-libxi6_2%3a1.7.10-0ubuntu1_amd64.deb ...
-Unpacking libxi6:amd64 (2:1.7.10-0ubuntu1) ...
-Selecting previously unselected package libxinerama1:amd64.
-Preparing to unpack .../156-libxinerama1_2%3a1.1.4-2_amd64.deb ...
-Unpacking libxinerama1:amd64 (2:1.1.4-2) ...
-Selecting previously unselected package libxkbfile1:amd64.
-Preparing to unpack .../157-libxkbfile1_1%3a1.1.0-1_amd64.deb ...
-Unpacking libxkbfile1:amd64 (1:1.1.0-1) ...
-Selecting previously unselected package libxml-namespacesupport-perl.
-Preparing to unpack .../158-libxml-namespacesupport-perl_1.12-1_all.deb ...
-Unpacking libxml-namespacesupport-perl (1.12-1) ...
-Selecting previously unselected package libxml-sax-base-perl.
-Preparing to unpack .../159-libxml-sax-base-perl_1.09-1_all.deb ...
-Unpacking libxml-sax-base-perl (1.09-1) ...
-Selecting previously unselected package libxml-sax-perl.
-Preparing to unpack .../160-libxml-sax-perl_1.02+dfsg-1_all.deb ...
-Unpacking libxml-sax-perl (1.02+dfsg-1) ...
-Selecting previously unselected package libxml-libxml-perl.
-Preparing to unpack .../161-libxml-libxml-perl_2.0134+dfsg-1build1_amd64.deb ...
-Unpacking libxml-libxml-perl (2.0134+dfsg-1build1) ...
-Selecting previously unselected package libxml-parser-perl.
-Preparing to unpack .../162-libxml-parser-perl_2.46-1_amd64.deb ...
-Unpacking libxml-parser-perl (2.46-1) ...
-Selecting previously unselected package libxml-sax-expat-perl.
-Preparing to unpack .../163-libxml-sax-expat-perl_0.51-1_all.deb ...
-Unpacking libxml-sax-expat-perl (0.51-1) ...
-Selecting previously unselected package libxrandr2:amd64.
-Preparing to unpack .../164-libxrandr2_2%3a1.5.2-0ubuntu1_amd64.deb ...
-Unpacking libxrandr2:amd64 (2:1.5.2-0ubuntu1) ...
-Selecting previously unselected package libxtst6:amd64.
-Preparing to unpack .../165-libxtst6_2%3a1.2.3-1_amd64.deb ...
-Unpacking libxtst6:amd64 (2:1.2.3-1) ...
-Selecting previously unselected package libxv1:amd64.
-Preparing to unpack .../166-libxv1_2%3a1.0.11-1_amd64.deb ...
-Unpacking libxv1:amd64 (2:1.0.11-1) ...
-Selecting previously unselected package libxxf86dga1:amd64.
-Preparing to unpack .../167-libxxf86dga1_2%3a1.1.5-0ubuntu1_amd64.deb ...
-Unpacking libxxf86dga1:amd64 (2:1.1.5-0ubuntu1) ...
-Selecting previously unselected package libzzip-0-13:amd64.
-Preparing to unpack .../168-libzzip-0-13_0.13.62-3.2ubuntu1_amd64.deb ...
-Unpacking libzzip-0-13:amd64 (0.13.62-3.2ubuntu1) ...
-Selecting previously unselected package xfonts-encodings.
-Preparing to unpack .../169-xfonts-encodings_1%3a1.0.5-0ubuntu1_all.deb ...
-Unpacking xfonts-encodings (1:1.0.5-0ubuntu1) ...
-Selecting previously unselected package xfonts-utils.
-Preparing to unpack .../170-xfonts-utils_1%3a7.7+6_amd64.deb ...
-Unpacking xfonts-utils (1:7.7+6) ...
-Selecting previously unselected package lmodern.
-Preparing to unpack .../171-lmodern_2.004.5-6_all.deb ...
-Unpacking lmodern (2.004.5-6) ...
-Selecting previously unselected package mesa-vulkan-drivers:amd64.
-Preparing to unpack .../172-mesa-vulkan-drivers_21.2.6-0ubuntu0.1~20.04.2_amd64.deb ...
-Unpacking mesa-vulkan-drivers:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
-Selecting previously unselected package pandoc-data.
-Preparing to unpack .../173-pandoc-data_2.5-3build2_all.deb ...
-Unpacking pandoc-data (2.5-3build2) ...
-Selecting previously unselected package pandoc.
-Preparing to unpack .../174-pandoc_2.5-3build2_amd64.deb ...
-Unpacking pandoc (2.5-3build2) ...
-Selecting previously unselected package preview-latex-style.
-Preparing to unpack .../175-preview-latex-style_11.91-2ubuntu2_all.deb ...
-Unpacking preview-latex-style (11.91-2ubuntu2) ...
-Selecting previously unselected package qpdf.
-Preparing to unpack .../176-qpdf_9.1.1-1ubuntu0.1_amd64.deb ...
-Unpacking qpdf (9.1.1-1ubuntu0.1) ...
-Selecting previously unselected package t1utils.
-Preparing to unpack .../177-t1utils_1.41-3_amd64.deb ...
-Unpacking t1utils (1.41-3) ...
-Selecting previously unselected package tcl8.6.
-Preparing to unpack .../178-tcl8.6_8.6.10+dfsg-1_amd64.deb ...
-Unpacking tcl8.6 (8.6.10+dfsg-1) ...
-Selecting previously unselected package tcl.
-Preparing to unpack .../179-tcl_8.6.9+1_amd64.deb ...
-Unpacking tcl (8.6.9+1) ...
-Selecting previously unselected package teckit.
-Preparing to unpack .../180-teckit_2.5.8+ds2-5ubuntu2_amd64.deb ...
-Unpacking teckit (2.5.8+ds2-5ubuntu2) ...
-Selecting previously unselected package tex-gyre.
-Preparing to unpack .../181-tex-gyre_20180621-3_all.deb ...
-Unpacking tex-gyre (20180621-3) ...
-Selecting previously unselected package texinfo.
-Preparing to unpack .../182-texinfo_6.7.0.dfsg.2-5_amd64.deb ...
-Unpacking texinfo (6.7.0.dfsg.2-5) ...
-Selecting previously unselected package texlive-binaries.
-Preparing to unpack .../183-texlive-binaries_2019.20190605.51237-3build2_amd64.deb ...
-Unpacking texlive-binaries (2019.20190605.51237-3build2) ...
-Selecting previously unselected package texlive-base.
-Preparing to unpack .../184-texlive-base_2019.20200218-1_all.deb ...
-Unpacking texlive-base (2019.20200218-1) ...
-Selecting previously unselected package texlive-fonts-extra.
-Preparing to unpack .../185-texlive-fonts-extra_2019.202000218-1_all.deb ...
-Unpacking texlive-fonts-extra (2019.202000218-1) ...
-Selecting previously unselected package fonts-stix.
-Preparing to unpack .../186-fonts-stix_1.1.1-4_all.deb ...
-Unpacking fonts-stix (1.1.1-4) ...
-Selecting previously unselected package texlive-fonts-extra-links.
-Preparing to unpack .../187-texlive-fonts-extra-links_2019.202000218-1_all.deb ...
-Unpacking texlive-fonts-extra-links (2019.202000218-1) ...
-Selecting previously unselected package texlive-fonts-recommended.
-Preparing to unpack .../188-texlive-fonts-recommended_2019.20200218-1_all.deb ...
-Unpacking texlive-fonts-recommended (2019.20200218-1) ...
-Selecting previously unselected package texlive-lang-greek.
-Preparing to unpack .../189-texlive-lang-greek_2019.20200218-1_all.deb ...
-Unpacking texlive-lang-greek (2019.20200218-1) ...
-Selecting previously unselected package texlive-latex-base.
-Preparing to unpack .../190-texlive-latex-base_2019.20200218-1_all.deb ...
-Unpacking texlive-latex-base (2019.20200218-1) ...
-Selecting previously unselected package libfontbox-java.
-Preparing to unpack .../191-libfontbox-java_1%3a1.8.16-2_all.deb ...
-Unpacking libfontbox-java (1:1.8.16-2) ...
-Selecting previously unselected package libpdfbox-java.
-Preparing to unpack .../192-libpdfbox-java_1%3a1.8.16-2_all.deb ...
-Unpacking libpdfbox-java (1:1.8.16-2) ...
-Selecting previously unselected package texlive-latex-recommended.
-Preparing to unpack .../193-texlive-latex-recommended_2019.20200218-1_all.deb ...
-Unpacking texlive-latex-recommended (2019.20200218-1) ...
-Selecting previously unselected package texlive-pictures.
-Preparing to unpack .../194-texlive-pictures_2019.20200218-1_all.deb ...
-Unpacking texlive-pictures (2019.20200218-1) ...
-Selecting previously unselected package texlive-latex-extra.
-Preparing to unpack .../195-texlive-latex-extra_2019.202000218-1_all.deb ...
-Unpacking texlive-latex-extra (2019.202000218-1) ...
-Selecting previously unselected package texlive-luatex.
-Preparing to unpack .../196-texlive-luatex_2019.20200218-1_all.deb ...
-Unpacking texlive-luatex (2019.20200218-1) ...
-Selecting previously unselected package texlive-plain-generic.
-Preparing to unpack .../197-texlive-plain-generic_2019.202000218-1_all.deb ...
-Unpacking texlive-plain-generic (2019.202000218-1) ...
-Selecting previously unselected package texlive-science.
-Preparing to unpack .../198-texlive-science_2019.202000218-1_all.deb ...
-Unpacking texlive-science (2019.202000218-1) ...
-Selecting previously unselected package tipa.
-Preparing to unpack .../199-tipa_2%3a1.3-20_all.deb ...
-Unpacking tipa (2:1.3-20) ...
-Selecting previously unselected package texlive-xetex.
-Preparing to unpack .../200-texlive-xetex_2019.20200218-1_all.deb ...
-Unpacking texlive-xetex (2019.20200218-1) ...
-Selecting previously unselected package tk8.6.
-Preparing to unpack .../201-tk8.6_8.6.10-1_amd64.deb ...
-Unpacking tk8.6 (8.6.10-1) ...
-Selecting previously unselected package tk.
-Preparing to unpack .../202-tk_8.6.9+1_amd64.deb ...
-Unpacking tk (8.6.9+1) ...
-Selecting previously unselected package libglvnd0:amd64.
-Preparing to unpack .../203-libglvnd0_1.3.2-1~ubuntu0.20.04.2_amd64.deb ...
-Unpacking libglvnd0:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
-Selecting previously unselected package libglx0:amd64.
-Preparing to unpack .../204-libglx0_1.3.2-1~ubuntu0.20.04.2_amd64.deb ...
-Unpacking libglx0:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
-Selecting previously unselected package libgl1:amd64.
-Preparing to unpack .../205-libgl1_1.3.2-1~ubuntu0.20.04.2_amd64.deb ...
-Unpacking libgl1:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
-Selecting previously unselected package x11-utils.
-Preparing to unpack .../206-x11-utils_7.7+5_amd64.deb ...
-Unpacking x11-utils (7.7+5) ...
-Selecting previously unselected package xbitmaps.
-Preparing to unpack .../207-xbitmaps_1.1.1-2_all.deb ...
-Unpacking xbitmaps (1.1.1-2) ...
-Selecting previously unselected package xterm.
-Preparing to unpack .../208-xterm_353-1ubuntu1.20.04.2_amd64.deb ...
-Unpacking xterm (353-1ubuntu1.20.04.2) ...
-Selecting previously unselected package libauthen-sasl-perl.
-Preparing to unpack .../209-libauthen-sasl-perl_2.1600-1_all.deb ...
-Unpacking libauthen-sasl-perl (2.1600-1) ...
-Selecting previously unselected package libghc-pandoc-citeproc-data.
-Preparing to unpack .../210-libghc-pandoc-citeproc-data_0.15.0.1-1build4_all.deb ...
-Unpacking libghc-pandoc-citeproc-data (0.15.0.1-1build4) ...
-Selecting previously unselected package pandoc-citeproc.
-Preparing to unpack .../211-pandoc-citeproc_0.15.0.1-1build4_amd64.deb ...
-Unpacking pandoc-citeproc (0.15.0.1-1build4) ...
-Setting up libexpat1:amd64 (2.2.9-1ubuntu0.4) ...
-Setting up javascript-common (11) ...
-Setting up tk8.6 (8.6.10-1) ...
-Setting up libxcb-dri3-0:amd64 (1.14-2) ...
-Setting up liblcms2-2:amd64 (2.9-4) ...
-Setting up fonts-gfs-didot (1.1-6) ...
-Setting up fonts-gfs-artemisia (1.1-5) ...
-Setting up fonts-sil-gentium-basic (1.102-1) ...
-Setting up libx11-xcb1:amd64 (2:1.6.9-2ubuntu1.2) ...
-Setting up libpciaccess0:amd64 (0.16-0ubuntu1) ...
-Setting up fonts-cantarell (0.111-2) ...
-Setting up tcl8.6 (8.6.10+dfsg-1) ...
-Setting up libxmu6:amd64 (2:1.1.3-0ubuntu1) ...
-Setting up fonts-ebgaramond (0.016-1ubuntu1) ...
-Setting up libharfbuzz-icu0:amd64 (2.6.4-1ubuntu4) ...
-Setting up fonts-lato (2.0-2) ...
-Setting up fonts-junicode (1.002-2) ...
-Setting up libxcb-xfixes0:amd64 (1.14-2) ...
-Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ...
-Setting up libxpm4:amd64 (1:3.5.12-1) ...
-Setting up libqpdf26:amd64 (9.1.1-1ubuntu0.1) ...
-Setting up fonts-gfs-porson (1.1-6) ...
-Setting up libxi6:amd64 (2:1.7.10-0ubuntu1) ...
-Setting up libfont-afm-perl (1.20-2) ...
-Setting up libwoff1:amd64 (1.0.2-1build2) ...
-Setting up ruby-power-assert (1.1.7-1) ...
-Setting up libtexlua53:amd64 (2019.20190605.51237-3build2) ...
-Setting up libglvnd0:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
-Setting up fonts-adf-berenis (0.20190904-1.1) ...
-Setting up libxtst6:amd64 (2:1.2.3-1) ...
-Setting up libhtml-tagset-perl (3.20-4) ...
-Setting up libijs-0.35:amd64 (0.35-15) ...
-Setting up libauthen-sasl-perl (2.1600-1) ...
-Setting up libxcb-glx0:amd64 (1.14-2) ...
-Setting up libtexluajit2:amd64 (2019.20190605.51237-3build2) ...
-Setting up libfontbox-java (1:1.8.16-2) ...
-Setting up libedit2:amd64 (3.1-20191231-1) ...
-Setting up liblwp-mediatypes-perl (6.04-1) ...
-Setting up fonts-freefont-otf (20120503-10) ...
-Setting up libxcb-shape0:amd64 (1.14-2) ...
-Setting up libtry-tiny-perl (0.30-1) ...
-Setting up libsensors-config (1:3.6.0-2ubuntu1.1) ...
-Setting up libxxf86dga1:amd64 (2:1.1.5-0ubuntu1) ...
-Setting up perl-openssl-defaults:amd64 (4) ...
-Setting up fonts-freefont-ttf (20120503-10) ...
-Setting up fonts-gfs-solomos (1.1-5) ...
-Setting up libxml-namespacesupport-perl (1.12-1) ...
-Setting up fonts-comfortaa (3.001-3) ...
-Setting up libencode-locale-perl (1.05-1) ...
-Setting up rubygems-integration (1.16) ...
-Setting up libzzip-0-13:amd64 (0.13.62-3.2ubuntu1) ...
-Setting up fonts-sil-gentiumplus-compact (5.000-2) ...
-Setting up libxaw7:amd64 (2:1.0.13-1) ...
-Setting up libghc-pandoc-citeproc-data (0.15.0.1-1build4) ...
-Setting up fonts-roboto-unhinted (2:0~20170802-3) ...
-Setting up fonts-urw-base35 (20170801.1-3) ...
-Setting up fonts-open-sans (1.11-1) ...
-Setting up fonts-sil-gentiumplus (5.000-2) ...
-Setting up fonts-gfs-neohellenic (1.1-6) ...
-Setting up fonts-gfs-olga (1.1-5) ...
-Setting up fonts-oflb-asana-math (000.907-6) ...
-Setting up libxxf86vm1:amd64 (1:1.1.4-1build1) ...
-Setting up poppler-data (0.4.9-2) ...
-Setting up libfreetype-dev:amd64 (2.10.1-2ubuntu0.1) ...
-Setting up libxcb-present0:amd64 (1.14-2) ...
-Setting up fonts-crosextra-carlito (20130920-1) ...
-Setting up ruby-minitest (5.13.0-1) ...
-Setting up fonts-adf-accanthis (0.20190904-1.1) ...
-Setting up tex-common (6.13) ...
-update-language: texlive-base not installed and configured, doing nothing!
-Setting up fonts-sil-gentium (20081126:1.03-2) ...
-Setting up libxml-sax-base-perl (1.09-1) ...
-Setting up fonts-adf-universalis (0.20190904-1.1) ...
-Setting up libbibutils6 (6.2-1) ...
-Setting up libfontenc1:amd64 (1:1.1.4-0ubuntu1) ...
-Setting up libexpat1-dev:amd64 (2.2.9-1ubuntu0.4) ...
-Setting up fonts-stix (1.1.1-4) ...
-Setting up ruby-test-unit (3.3.5-1) ...
-Setting up libdata-dump-perl (1.23-1) ...
-Setting up libnspr4:amd64 (2:4.25-1) ...
-Setting up libxfixes3:amd64 (1:5.0.3-2) ...
-Setting up libxcb-sync1:amd64 (1.14-2) ...
-Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ...
-Setting up fonts-go (0~20170330-1) ...
-Setting up libidn11:amd64 (1.33-2.2ubuntu2) ...
-Setting up libteckit0:amd64 (2.5.8+ds2-5ubuntu2) ...
-Setting up uuid-dev:amd64 (2.34-0.1ubuntu9.3) ...
-Setting up libapache-pom-java (18-1) ...
-Setting up libavahi-common-data:amd64 (0.7-4ubuntu7.1) ...
-Setting up libllvm12:amd64 (1:12.0.0-3ubuntu1~20.04.5) ...
-Setting up qpdf (9.1.1-1ubuntu0.1) ...
-Setting up ruby-net-telnet (0.1.1-2) ...
-Setting up fonts-cabin (1.5-3) ...
-Setting up xfonts-encodings (1:1.0.5-0ubuntu1) ...
-Setting up t1utils (1.41-3) ...
-Setting up libxinerama1:amd64 (2:1.1.4-2) ...
-Setting up libxv1:amd64 (2:1.0.11-1) ...
-Setting up libio-html-perl (1.001-1) ...
-Setting up libxrandr2:amd64 (2:1.5.2-0ubuntu1) ...
-Setting up fonts-texgyre (20180621-3) ...
-Setting up libsensors5:amd64 (1:3.6.0-2ubuntu1.1) ...
-Setting up fonts-linuxlibertine (5.3.0-4) ...
-Setting up libglapi-mesa:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
-Setting up libkpathsea6:amd64 (2019.20190605.51237-3build2) ...
-Setting up libvulkan1:amd64 (1.2.131.2-1) ...
-Setting up libtimedate-perl (2.3200-1) ...
-Setting up fonts-croscore (20200323-1build1~ubuntu20.04.1) ...
-Setting up libutempter0:amd64 (1.1.6-4) ...
-Setting up libxcb-dri2-0:amd64 (1.14-2) ...
-Setting up fonts-dejavu-extra (2.37-1) ...
-Setting up fonts-gfs-baskerville (1.1-5) ...
-Setting up libxshmfence1:amd64 (1.3-1) ...
-Setting up libxcb-randr0:amd64 (1.14-2) ...
-Setting up tcl (8.6.9+1) ...
-Setting up fonts-gfs-complutum (1.1-6) ...
-Setting up fonts-crosextra-caladea (20130214-2) ...
-Setting up fonts-lmodern (2.004.5-6) ...
-Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ...
-Setting up netbase (6.1) ...
-Setting up fonts-ebgaramond-extra (0.016-1ubuntu1) ...
-Setting up fonts-lobster (2.0-2) ...
-Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ...
-Setting up libxkbfile1:amd64 (1:1.1.0-1) ...
-Setting up pandoc-data (2.5-3build2) ...
-Setting up libjs-jquery (3.3.1~dfsg-3) ...
-Setting up libtext-unidecode-perl (1.30-1) ...
-Setting up tk (8.6.9+1) ...
-Setting up libdrm-common (2.4.107-8ubuntu1~20.04.2) ...
-Setting up libxcomposite1:amd64 (1:0.4.5-1) ...
-Setting up fonts-adf-gillius (0.20190904-1.1) ...
-Setting up ruby-xmlrpc (0.3.0-2) ...
-Setting up fonts-noto-core (20200323-1build1~ubuntu20.04.1) ...
-Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ...
-Setting up liburi-perl (1.76-2) ...
-Setting up xbitmaps (1.1.1-2) ...
-Setting up libsynctex2:amd64 (2019.20190605.51237-3build2) ...
-Setting up libwayland-client0:amd64 (1.18.0-1) ...
-Setting up libnet-ssleay-perl (1.88-2ubuntu1) ...
-Setting up libgs9-common (9.50~dfsg-5ubuntu4.5) ...
-Setting up teckit (2.5.8+ds2-5ubuntu2) ...
-Setting up libhttp-date-perl (6.05-1) ...
-Setting up pandoc-citeproc (0.15.0.1-1build4) ...
-Setting up libfile-listing-perl (6.04-1) ...
-Setting up libpdfbox-java (1:1.8.16-2) ...
-Setting up preview-latex-style (11.91-2ubuntu2) ...
-Setting up libcommons-parent-java (43-1) ...
-Setting up libavahi-common3:amd64 (0.7-4ubuntu7.1) ...
-Setting up libcommons-logging-java (1.2-2) ...
-Setting up libnet-http-perl (6.19-1) ...
-Setting up libnss3:amd64 (2:3.49.1-1ubuntu1.7) ...
-Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ...
-Setting up xfonts-utils (1:7.7+6) ...
-Setting up libxml-sax-perl (1.02+dfsg-1) ...
-update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
-update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
-
-Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
-Setting up fonts-lobstertwo (2.0-2) ...
-Setting up libfreetype6-dev:amd64 (2.10.1-2ubuntu0.1) ...
-Setting up libptexenc1:amd64 (2019.20190605.51237-3build2) ...
-Setting up pandoc (2.5-3build2) ...
-Setting up texlive-fonts-extra-links (2019.202000218-1) ...
-Setting up libxml-libxml-perl (2.0134+dfsg-1build1) ...
-update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
-update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
-update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
-Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
-Setting up libwww-robotrules-perl (6.02-1) ...
-Setting up libdrm2:amd64 (2.4.107-8ubuntu1~20.04.2) ...
-Setting up texlive-binaries (2019.20190605.51237-3build2) ...
-update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
-update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
-update-alternatives: warning: skip creation of /usr/share/man/man1/bibtex.1.gz because associated file /usr/share/man/man1/bibtex.original.1.gz (of link group bibtex) doesn't exist
-Setting up lmodern (2.004.5-6) ...
-Setting up libhtml-parser-perl (3.72-5) ...
-Setting up xterm (353-1ubuntu1.20.04.2) ...
-update-alternatives: using /usr/bin/xterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
-update-alternatives: warning: skip creation of /usr/share/man/man1/x-terminal-emulator.1.gz because associated file /usr/share/man/man1/xterm.1.gz (of link group x-terminal-emulator) doesn't exist
-update-alternatives: using /usr/bin/lxterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
-update-alternatives: warning: skip creation of /usr/share/man/man1/x-terminal-emulator.1.gz because associated file /usr/share/man/man1/lxterm.1.gz (of link group x-terminal-emulator) doesn't exist
-Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ...
-Setting up texlive-base (2019.20200218-1) ...
-tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
-tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
-tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
-tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
-tl-paper: setting paper size for dvipdfmx to letter: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
-tl-paper: setting paper size for dvips to letter: /var/lib/texmf/dvips/config/config-paper.ps
-tl-paper: setting paper size for pdftex to letter: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
-tl-paper: setting paper size for xdvi to letter: /var/lib/texmf/xdvi/XDvi-paper
-Setting up tex-gyre (20180621-3) ...
-Setting up libavahi-client3:amd64 (0.7-4ubuntu7.1) ...
-Setting up libio-socket-ssl-perl (2.067-1) ...
-Setting up libhttp-message-perl (6.22-1) ...
-Setting up libdrm-amdgpu1:amd64 (2.4.107-8ubuntu1~20.04.2) ...
-Setting up libhtml-form-perl (6.07-1) ...
-Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ...
-Setting up mesa-vulkan-drivers:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
-Setting up libhttp-negotiate-perl (6.01-1) ...
-Setting up libdrm-nouveau2:amd64 (2.4.107-8ubuntu1~20.04.2) ...
-Setting up libfontconfig1-dev:amd64 (2.13.1-2ubuntu3) ...
-Setting up libhttp-cookies-perl (6.08-1) ...
-Setting up texlive-luatex (2019.20200218-1) ...
-Setting up libdrm-radeon1:amd64 (2.4.107-8ubuntu1~20.04.2) ...
-Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ...
-Setting up libhtml-tree-perl (5.07-2) ...
-Setting up libdrm-intel1:amd64 (2.4.107-8ubuntu1~20.04.2) ...
-Setting up libgl1-mesa-dri:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
-Setting up texlive-plain-generic (2019.202000218-1) ...
-Setting up texlive-lang-greek (2019.20200218-1) ...
-Setting up libhtml-format-perl (2.12-1) ...
-Setting up libnet-smtp-ssl-perl (1.04-1) ...
-Setting up texlive-latex-base (2019.20200218-1) ...
-Setting up libmailtools-perl (2.21-1) ...
-Setting up texlive-fonts-extra (2019.202000218-1) ...
-Setting up texlive-latex-recommended (2019.20200218-1) ...
-Setting up texinfo (6.7.0.dfsg.2-5) ...
-Running mktexlsr. This may take some time. ... done.
-Setting up texlive-pictures (2019.20200218-1) ...
-Setting up libcups2:amd64 (2.3.1-9ubuntu1.2) ...
-Setting up libhttp-daemon-perl (6.06-1) ...
-Setting up texlive-fonts-recommended (2019.20200218-1) ...
-Setting up tipa (2:1.3-20) ...
-Regenerating '/var/lib/texmf/fmtutil.cnf-DEBIAN'... done.
-Regenerating '/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST'... done.
-update-fmtutil has updated the following file(s):
-	/var/lib/texmf/fmtutil.cnf-DEBIAN
-	/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST
-If you want to activate the changes in the above file(s),
-you should run fmtutil-sys or fmtutil.
-Setting up libglx-mesa0:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
-Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.5) ...
-Setting up libglx0:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
-Setting up texlive-science (2019.202000218-1) ...
-Setting up dvisvgm (2.8.1-1build1) ...
-Setting up texlive-latex-extra (2019.202000218-1) ...
-Setting up ghostscript (9.50~dfsg-5ubuntu4.5) ...
-Setting up libgl1:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
-Setting up x11-utils (7.7+5) ...
-Setting up texlive-xetex (2019.20200218-1) ...
-Setting up ruby (1:2.7+1) ...
-Setting up rake (13.0.1-4) ...
-Setting up liblwp-protocol-https-perl (6.07-2ubuntu2) ...
-Setting up libwww-perl (6.43-1) ...
-Setting up libruby2.7:amd64 (2.7.0-5ubuntu1.7) ...
-Setting up libxml-parser-perl (2.46-1) ...
-Setting up ruby2.7 (2.7.0-5ubuntu1.7) ...
-Setting up libxml-sax-expat-perl (0.51-1) ...
-update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50...
-update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
-Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
-Processing triggers for fontconfig (2.13.1-2ubuntu3) ...
-Processing triggers for mime-support (3.64ubuntu1) ...
-Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
-Processing triggers for tex-common (6.13) ...
-Running updmap-sys. This may take some time... done.
-Running mktexlsr /var/lib/texmf ... done.
-Building format(s) --all.
-	This may take some time... done.
-
-
-
-
-================
-
-apt install
-
-================
-
-
-
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-build-essential is already the newest version (12.8ubuntu1.1).
-build-essential set to manually installed.
-The following additional packages will be installed:
-  libblkid-dev libblkid1 libcairo-gobject2 libcairo-script-interpreter2
-  libcurl3-gnutls libffi-dev libgcrypt20-dev libgit2-28 libglib2.0-dev
-  libglib2.0-dev-bin libgpg-error-dev libhttp-parser-dev libhttp-parser2.9
-  libice-dev liblzo2-2 libmbedcrypto3 libmbedtls-dev libmbedtls12
-  libmbedx509-0 libmount-dev libmount1 libpixman-1-dev libpthread-stubs0-dev
-  libselinux1-dev libsepol1 libsepol1-dev libsm-dev libssh2-1 libssh2-1-dev
-  libssl1.1 libx11-dev libxau-dev libxcb-render0-dev libxcb-shm0-dev
-  libxcb1-dev libxdmcp-dev libxext-dev libxml2 libxrender-dev
-  python3-distutils python3-lib2to3 x11proto-core-dev x11proto-dev
-  x11proto-xext-dev xorg-sgml-doctools xtrans-dev
-Suggested packages:
-  libcairo2-doc libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev
-  libldap2-dev librtmp-dev libgcrypt20-doc libgirepository1.0-dev
-  libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils
-  libice-doc libmbedtls-doc libsm-doc libssl-doc libx11-doc libxcb-doc
-  libxext-doc libxt-doc
-The following NEW packages will be installed:
-  libblkid-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2-dev
-  libcurl3-gnutls libcurl4-gnutls-dev libffi-dev libgcrypt20-dev libgit2-28
-  libgit2-dev libglib2.0-dev libglib2.0-dev-bin libgpg-error-dev
-  libhttp-parser-dev libhttp-parser2.9 libice-dev liblzo2-2 libmbedcrypto3
-  libmbedtls-dev libmbedtls12 libmbedx509-0 libmount-dev libpixman-1-dev
-  libpthread-stubs0-dev libselinux1-dev libsepol1-dev libsm-dev libssh2-1
-  libssh2-1-dev libssl-dev libx11-dev libxau-dev libxcb-render0-dev
-  libxcb-shm0-dev libxcb1-dev libxdmcp-dev libxext-dev libxml2-dev
-  libxrender-dev libxt-dev python3-distutils python3-lib2to3 x11proto-core-dev
-  x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev
-The following packages will be upgraded:
-  libblkid1 libmount1 libsepol1 libssl1.1 libxml2
-5 upgraded, 47 newly installed, 0 to remove and 86 not upgraded.
-Need to get 13.9 MB of archives.
-After this operation, 55.1 MB of additional disk space will be used.
-Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libblkid1 amd64 2.34-0.1ubuntu9.3 [136 kB]
-Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libmount1 amd64 2.34-0.1ubuntu9.3 [149 kB]
-Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libsepol1 amd64 3.0-1ubuntu0.1 [252 kB]
-Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libssl1.1 amd64 1.1.1f-1ubuntu2.15 [1,321 kB]
-Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2 amd64 2.9.10+dfsg-5ubuntu0.20.04.3 [640 kB]
-Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libcairo-gobject2 amd64 1.16.0-4ubuntu1 [17.2 kB]
-Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 liblzo2-2 amd64 2.10-2 [50.8 kB]
-Get:8 http://archive.ubuntu.com/ubuntu focal/main amd64 libcairo-script-interpreter2 amd64 1.16.0-4ubuntu1 [54.2 kB]
-Get:9 http://archive.ubuntu.com/ubuntu focal/main amd64 xorg-sgml-doctools all 1:1.11-1 [12.9 kB]
-Get:10 http://archive.ubuntu.com/ubuntu focal/main amd64 x11proto-dev all 2019.2-1ubuntu1 [594 kB]
-Get:11 http://archive.ubuntu.com/ubuntu focal/main amd64 x11proto-core-dev all 2019.2-1ubuntu1 [2,620 B]
-Get:12 http://archive.ubuntu.com/ubuntu focal/main amd64 libxau-dev amd64 1:1.0.9-0ubuntu1 [9,552 B]
-Get:13 http://archive.ubuntu.com/ubuntu focal/main amd64 libxdmcp-dev amd64 1:1.1.3-0ubuntu1 [25.3 kB]
-Get:14 http://archive.ubuntu.com/ubuntu focal/main amd64 xtrans-dev all 1.4.0-1 [68.9 kB]
-Get:15 http://archive.ubuntu.com/ubuntu focal/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5,384 B]
-Get:16 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb1-dev amd64 1.14-2 [80.5 kB]
-Get:17 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libx11-dev amd64 2:1.6.9-2ubuntu1.2 [647 kB]
-Get:18 http://archive.ubuntu.com/ubuntu focal/main amd64 libxrender-dev amd64 1:0.9.10-1 [24.9 kB]
-Get:19 http://archive.ubuntu.com/ubuntu focal/main amd64 x11proto-xext-dev all 2019.2-1ubuntu1 [2,616 B]
-Get:20 http://archive.ubuntu.com/ubuntu focal/main amd64 libxext-dev amd64 2:1.3.4-0ubuntu1 [82.2 kB]
-Get:21 http://archive.ubuntu.com/ubuntu focal/main amd64 libice-dev amd64 2:1.0.10-0ubuntu1 [47.8 kB]
-Get:22 http://archive.ubuntu.com/ubuntu focal/main amd64 libsm-dev amd64 2:1.2.3-1 [17.0 kB]
-Get:23 http://archive.ubuntu.com/ubuntu focal/main amd64 libpixman-1-dev amd64 0.38.4-0ubuntu1 [243 kB]
-Get:24 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render0-dev amd64 1.14-2 [18.4 kB]
-Get:25 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb-shm0-dev amd64 1.14-2 [6,716 B]
-Get:26 http://archive.ubuntu.com/ubuntu focal/main amd64 libffi-dev amd64 3.3-4 [57.0 kB]
-Get:27 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-lib2to3 all 3.8.10-0ubuntu1~20.04 [76.3 kB]
-Get:28 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-distutils all 3.8.10-0ubuntu1~20.04 [141 kB]
-Get:29 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libglib2.0-dev-bin amd64 2.64.6-1~ubuntu20.04.4 [109 kB]
-Get:30 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libblkid-dev amd64 2.34-0.1ubuntu9.3 [167 kB]
-Get:31 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libmount-dev amd64 2.34-0.1ubuntu9.3 [176 kB]
-Get:32 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libsepol1-dev amd64 3.0-1ubuntu0.1 [325 kB]
-Get:33 http://archive.ubuntu.com/ubuntu focal/main amd64 libselinux1-dev amd64 3.0-1build2 [151 kB]
-Get:34 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libglib2.0-dev amd64 2.64.6-1~ubuntu20.04.4 [1,506 kB]
-Get:35 http://archive.ubuntu.com/ubuntu focal/main amd64 libcairo2-dev amd64 1.16.0-4ubuntu1 [627 kB]
-Get:36 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl3-gnutls amd64 7.68.0-1ubuntu2.12 [232 kB]
-Get:37 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-gnutls-dev amd64 7.68.0-1ubuntu2.12 [319 kB]
-Get:38 http://archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB]
-Get:39 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1.1 [471 kB]
-Get:40 http://archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB]
-Get:41 http://archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB]
-Get:42 http://archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB]
-Get:43 http://archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB]
-Get:44 http://archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1 amd64 1.8.0-2.1build1 [75.4 kB]
-Get:45 http://archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB]
-Get:46 http://archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB]
-Get:47 http://archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB]
-Get:48 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libssl-dev amd64 1.1.1f-1ubuntu2.15 [1,584 kB]
-Get:49 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2-dev amd64 2.9.10+dfsg-5ubuntu0.20.04.3 [735 kB]
-Get:50 http://archive.ubuntu.com/ubuntu focal/main amd64 libxt-dev amd64 1:1.1.5-1 [395 kB]
-Get:51 http://archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB]
-Get:52 http://archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB]
-Fetched 13.9 MB in 51s (271 kB/s)
-(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 147709 files and directories currently installed.)
-Preparing to unpack .../libblkid1_2.34-0.1ubuntu9.3_amd64.deb ...
-Unpacking libblkid1:amd64 (2.34-0.1ubuntu9.3) over (2.34-0.1ubuntu9.1) ...
-Setting up libblkid1:amd64 (2.34-0.1ubuntu9.3) ...
-(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 147709 files and directories currently installed.)
-Preparing to unpack .../libmount1_2.34-0.1ubuntu9.3_amd64.deb ...
-Unpacking libmount1:amd64 (2.34-0.1ubuntu9.3) over (2.34-0.1ubuntu9.1) ...
-Setting up libmount1:amd64 (2.34-0.1ubuntu9.3) ...
-(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 147709 files and directories currently installed.)
-Preparing to unpack .../libsepol1_3.0-1ubuntu0.1_amd64.deb ...
-Unpacking libsepol1:amd64 (3.0-1ubuntu0.1) over (3.0-1) ...
-Setting up libsepol1:amd64 (3.0-1ubuntu0.1) ...
-(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 147709 files and directories currently installed.)
-Preparing to unpack .../00-libssl1.1_1.1.1f-1ubuntu2.15_amd64.deb ...
-Unpacking libssl1.1:amd64 (1.1.1f-1ubuntu2.15) over (1.1.1f-1ubuntu2.10) ...
-Preparing to unpack .../01-libxml2_2.9.10+dfsg-5ubuntu0.20.04.3_amd64.deb ...
-Unpacking libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.3) over (2.9.10+dfsg-5ubuntu0.20.04.1) ...
-Selecting previously unselected package libcairo-gobject2:amd64.
-Preparing to unpack .../02-libcairo-gobject2_1.16.0-4ubuntu1_amd64.deb ...
-Unpacking libcairo-gobject2:amd64 (1.16.0-4ubuntu1) ...
-Selecting previously unselected package liblzo2-2:amd64.
-Preparing to unpack .../03-liblzo2-2_2.10-2_amd64.deb ...
-Unpacking liblzo2-2:amd64 (2.10-2) ...
-Selecting previously unselected package libcairo-script-interpreter2:amd64.
-Preparing to unpack .../04-libcairo-script-interpreter2_1.16.0-4ubuntu1_amd64.deb ...
-Unpacking libcairo-script-interpreter2:amd64 (1.16.0-4ubuntu1) ...
-Selecting previously unselected package xorg-sgml-doctools.
-Preparing to unpack .../05-xorg-sgml-doctools_1%3a1.11-1_all.deb ...
-Unpacking xorg-sgml-doctools (1:1.11-1) ...
-Selecting previously unselected package x11proto-dev.
-Preparing to unpack .../06-x11proto-dev_2019.2-1ubuntu1_all.deb ...
-Unpacking x11proto-dev (2019.2-1ubuntu1) ...
-Selecting previously unselected package x11proto-core-dev.
-Preparing to unpack .../07-x11proto-core-dev_2019.2-1ubuntu1_all.deb ...
-Unpacking x11proto-core-dev (2019.2-1ubuntu1) ...
-Selecting previously unselected package libxau-dev:amd64.
-Preparing to unpack .../08-libxau-dev_1%3a1.0.9-0ubuntu1_amd64.deb ...
-Unpacking libxau-dev:amd64 (1:1.0.9-0ubuntu1) ...
-Selecting previously unselected package libxdmcp-dev:amd64.
-Preparing to unpack .../09-libxdmcp-dev_1%3a1.1.3-0ubuntu1_amd64.deb ...
-Unpacking libxdmcp-dev:amd64 (1:1.1.3-0ubuntu1) ...
-Selecting previously unselected package xtrans-dev.
-Preparing to unpack .../10-xtrans-dev_1.4.0-1_all.deb ...
-Unpacking xtrans-dev (1.4.0-1) ...
-Selecting previously unselected package libpthread-stubs0-dev:amd64.
-Preparing to unpack .../11-libpthread-stubs0-dev_0.4-1_amd64.deb ...
-Unpacking libpthread-stubs0-dev:amd64 (0.4-1) ...
-Selecting previously unselected package libxcb1-dev:amd64.
-Preparing to unpack .../12-libxcb1-dev_1.14-2_amd64.deb ...
-Unpacking libxcb1-dev:amd64 (1.14-2) ...
-Selecting previously unselected package libx11-dev:amd64.
-Preparing to unpack .../13-libx11-dev_2%3a1.6.9-2ubuntu1.2_amd64.deb ...
-Unpacking libx11-dev:amd64 (2:1.6.9-2ubuntu1.2) ...
-Selecting previously unselected package libxrender-dev:amd64.
-Preparing to unpack .../14-libxrender-dev_1%3a0.9.10-1_amd64.deb ...
-Unpacking libxrender-dev:amd64 (1:0.9.10-1) ...
-Selecting previously unselected package x11proto-xext-dev.
-Preparing to unpack .../15-x11proto-xext-dev_2019.2-1ubuntu1_all.deb ...
-Unpacking x11proto-xext-dev (2019.2-1ubuntu1) ...
-Selecting previously unselected package libxext-dev:amd64.
-Preparing to unpack .../16-libxext-dev_2%3a1.3.4-0ubuntu1_amd64.deb ...
-Unpacking libxext-dev:amd64 (2:1.3.4-0ubuntu1) ...
-Selecting previously unselected package libice-dev:amd64.
-Preparing to unpack .../17-libice-dev_2%3a1.0.10-0ubuntu1_amd64.deb ...
-Unpacking libice-dev:amd64 (2:1.0.10-0ubuntu1) ...
-Selecting previously unselected package libsm-dev:amd64.
-Preparing to unpack .../18-libsm-dev_2%3a1.2.3-1_amd64.deb ...
-Unpacking libsm-dev:amd64 (2:1.2.3-1) ...
-Selecting previously unselected package libpixman-1-dev:amd64.
-Preparing to unpack .../19-libpixman-1-dev_0.38.4-0ubuntu1_amd64.deb ...
-Unpacking libpixman-1-dev:amd64 (0.38.4-0ubuntu1) ...
-Selecting previously unselected package libxcb-render0-dev:amd64.
-Preparing to unpack .../20-libxcb-render0-dev_1.14-2_amd64.deb ...
-Unpacking libxcb-render0-dev:amd64 (1.14-2) ...
-Selecting previously unselected package libxcb-shm0-dev:amd64.
-Preparing to unpack .../21-libxcb-shm0-dev_1.14-2_amd64.deb ...
-Unpacking libxcb-shm0-dev:amd64 (1.14-2) ...
-Selecting previously unselected package libffi-dev:amd64.
-Preparing to unpack .../22-libffi-dev_3.3-4_amd64.deb ...
-Unpacking libffi-dev:amd64 (3.3-4) ...
-Selecting previously unselected package python3-lib2to3.
-Preparing to unpack .../23-python3-lib2to3_3.8.10-0ubuntu1~20.04_all.deb ...
-Unpacking python3-lib2to3 (3.8.10-0ubuntu1~20.04) ...
-Selecting previously unselected package python3-distutils.
-Preparing to unpack .../24-python3-distutils_3.8.10-0ubuntu1~20.04_all.deb ...
-Unpacking python3-distutils (3.8.10-0ubuntu1~20.04) ...
-Selecting previously unselected package libglib2.0-dev-bin.
-Preparing to unpack .../25-libglib2.0-dev-bin_2.64.6-1~ubuntu20.04.4_amd64.deb ...
-Unpacking libglib2.0-dev-bin (2.64.6-1~ubuntu20.04.4) ...
-Selecting previously unselected package libblkid-dev:amd64.
-Preparing to unpack .../26-libblkid-dev_2.34-0.1ubuntu9.3_amd64.deb ...
-Unpacking libblkid-dev:amd64 (2.34-0.1ubuntu9.3) ...
-Selecting previously unselected package libmount-dev:amd64.
-Preparing to unpack .../27-libmount-dev_2.34-0.1ubuntu9.3_amd64.deb ...
-Unpacking libmount-dev:amd64 (2.34-0.1ubuntu9.3) ...
-Selecting previously unselected package libsepol1-dev:amd64.
-Preparing to unpack .../28-libsepol1-dev_3.0-1ubuntu0.1_amd64.deb ...
-Unpacking libsepol1-dev:amd64 (3.0-1ubuntu0.1) ...
-Selecting previously unselected package libselinux1-dev:amd64.
-Preparing to unpack .../29-libselinux1-dev_3.0-1build2_amd64.deb ...
-Unpacking libselinux1-dev:amd64 (3.0-1build2) ...
-Selecting previously unselected package libglib2.0-dev:amd64.
-Preparing to unpack .../30-libglib2.0-dev_2.64.6-1~ubuntu20.04.4_amd64.deb ...
-Unpacking libglib2.0-dev:amd64 (2.64.6-1~ubuntu20.04.4) ...
-Selecting previously unselected package libcairo2-dev:amd64.
-Preparing to unpack .../31-libcairo2-dev_1.16.0-4ubuntu1_amd64.deb ...
-Unpacking libcairo2-dev:amd64 (1.16.0-4ubuntu1) ...
-Selecting previously unselected package libcurl3-gnutls:amd64.
-Preparing to unpack .../32-libcurl3-gnutls_7.68.0-1ubuntu2.12_amd64.deb ...
-Unpacking libcurl3-gnutls:amd64 (7.68.0-1ubuntu2.12) ...
-Selecting previously unselected package libcurl4-gnutls-dev:amd64.
-Preparing to unpack .../33-libcurl4-gnutls-dev_7.68.0-1ubuntu2.12_amd64.deb ...
-Unpacking libcurl4-gnutls-dev:amd64 (7.68.0-1ubuntu2.12) ...
-Selecting previously unselected package libgpg-error-dev.
-Preparing to unpack .../34-libgpg-error-dev_1.37-1_amd64.deb ...
-Unpacking libgpg-error-dev (1.37-1) ...
-Selecting previously unselected package libgcrypt20-dev.
-Preparing to unpack .../35-libgcrypt20-dev_1.8.5-5ubuntu1.1_amd64.deb ...
-Unpacking libgcrypt20-dev (1.8.5-5ubuntu1.1) ...
-Selecting previously unselected package libhttp-parser2.9:amd64.
-Preparing to unpack .../36-libhttp-parser2.9_2.9.2-2_amd64.deb ...
-Unpacking libhttp-parser2.9:amd64 (2.9.2-2) ...
-Selecting previously unselected package libmbedcrypto3:amd64.
-Preparing to unpack .../37-libmbedcrypto3_2.16.4-1ubuntu2_amd64.deb ...
-Unpacking libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ...
-Selecting previously unselected package libmbedx509-0:amd64.
-Preparing to unpack .../38-libmbedx509-0_2.16.4-1ubuntu2_amd64.deb ...
-Unpacking libmbedx509-0:amd64 (2.16.4-1ubuntu2) ...
-Selecting previously unselected package libmbedtls12:amd64.
-Preparing to unpack .../39-libmbedtls12_2.16.4-1ubuntu2_amd64.deb ...
-Unpacking libmbedtls12:amd64 (2.16.4-1ubuntu2) ...
-Selecting previously unselected package libssh2-1:amd64.
-Preparing to unpack .../40-libssh2-1_1.8.0-2.1build1_amd64.deb ...
-Unpacking libssh2-1:amd64 (1.8.0-2.1build1) ...
-Selecting previously unselected package libgit2-28:amd64.
-Preparing to unpack .../41-libgit2-28_0.28.4+dfsg.1-2_amd64.deb ...
-Unpacking libgit2-28:amd64 (0.28.4+dfsg.1-2) ...
-Selecting previously unselected package libmbedtls-dev:amd64.
-Preparing to unpack .../42-libmbedtls-dev_2.16.4-1ubuntu2_amd64.deb ...
-Unpacking libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ...
-Selecting previously unselected package libssh2-1-dev:amd64.
-Preparing to unpack .../43-libssh2-1-dev_1.8.0-2.1build1_amd64.deb ...
-Unpacking libssh2-1-dev:amd64 (1.8.0-2.1build1) ...
-Selecting previously unselected package libssl-dev:amd64.
-Preparing to unpack .../44-libssl-dev_1.1.1f-1ubuntu2.15_amd64.deb ...
-Unpacking libssl-dev:amd64 (1.1.1f-1ubuntu2.15) ...
-Selecting previously unselected package libxml2-dev:amd64.
-Preparing to unpack .../45-libxml2-dev_2.9.10+dfsg-5ubuntu0.20.04.3_amd64.deb ...
-Unpacking libxml2-dev:amd64 (2.9.10+dfsg-5ubuntu0.20.04.3) ...
-Selecting previously unselected package libxt-dev:amd64.
-Preparing to unpack .../46-libxt-dev_1%3a1.1.5-1_amd64.deb ...
-Unpacking libxt-dev:amd64 (1:1.1.5-1) ...
-Selecting previously unselected package libhttp-parser-dev.
-Preparing to unpack .../47-libhttp-parser-dev_2.9.2-2_amd64.deb ...
-Unpacking libhttp-parser-dev (2.9.2-2) ...
-Selecting previously unselected package libgit2-dev:amd64.
-Preparing to unpack .../48-libgit2-dev_0.28.4+dfsg.1-2_amd64.deb ...
-Unpacking libgit2-dev:amd64 (0.28.4+dfsg.1-2) ...
-Setting up libblkid-dev:amd64 (2.34-0.1ubuntu9.3) ...
-Setting up libpixman-1-dev:amd64 (0.38.4-0ubuntu1) ...
-Setting up libssl1.1:amd64 (1.1.1f-1ubuntu2.15) ...
-Setting up libsepol1-dev:amd64 (3.0-1ubuntu0.1) ...
-Setting up liblzo2-2:amd64 (2.10-2) ...
-Setting up libcurl3-gnutls:amd64 (7.68.0-1ubuntu2.12) ...
-Setting up libcurl4-gnutls-dev:amd64 (7.68.0-1ubuntu2.12) ...
-Setting up libffi-dev:amd64 (3.3-4) ...
-Setting up libpthread-stubs0-dev:amd64 (0.4-1) ...
-Setting up xtrans-dev (1.4.0-1) ...
-Setting up libgpg-error-dev (1.37-1) ...
-Setting up libssl-dev:amd64 (1.1.1f-1ubuntu2.15) ...
-Setting up libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ...
-Setting up libssh2-1:amd64 (1.8.0-2.1build1) ...
-Setting up xorg-sgml-doctools (1:1.11-1) ...
-Setting up libcairo-gobject2:amd64 (1.16.0-4ubuntu1) ...
-Setting up python3-lib2to3 (3.8.10-0ubuntu1~20.04) ...
-Setting up libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.3) ...
-Setting up libmount-dev:amd64 (2.34-0.1ubuntu9.3) ...
-Setting up libhttp-parser2.9:amd64 (2.9.2-2) ...
-Setting up python3-distutils (3.8.10-0ubuntu1~20.04) ...
-Setting up x11proto-dev (2019.2-1ubuntu1) ...
-Setting up libcairo-script-interpreter2:amd64 (1.16.0-4ubuntu1) ...
-Setting up libglib2.0-dev-bin (2.64.6-1~ubuntu20.04.4) ...
-Setting up libhttp-parser-dev (2.9.2-2) ...
-Setting up libxau-dev:amd64 (1:1.0.9-0ubuntu1) ...
-Setting up libice-dev:amd64 (2:1.0.10-0ubuntu1) ...
-Setting up libmbedx509-0:amd64 (2.16.4-1ubuntu2) ...
-Setting up libsm-dev:amd64 (2:1.2.3-1) ...
-Setting up libselinux1-dev:amd64 (3.0-1build2) ...
-Setting up libmbedtls12:amd64 (2.16.4-1ubuntu2) ...
-Setting up libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ...
-Setting up libxdmcp-dev:amd64 (1:1.1.3-0ubuntu1) ...
-Setting up libxml2-dev:amd64 (2.9.10+dfsg-5ubuntu0.20.04.3) ...
-Setting up libglib2.0-dev:amd64 (2.64.6-1~ubuntu20.04.4) ...
-Setting up libgcrypt20-dev (1.8.5-5ubuntu1.1) ...
-Setting up x11proto-core-dev (2019.2-1ubuntu1) ...
-Setting up libssh2-1-dev:amd64 (1.8.0-2.1build1) ...
-Setting up x11proto-xext-dev (2019.2-1ubuntu1) ...
-Setting up libgit2-28:amd64 (0.28.4+dfsg.1-2) ...
-Setting up libxcb1-dev:amd64 (1.14-2) ...
-Setting up libx11-dev:amd64 (2:1.6.9-2ubuntu1.2) ...
-Setting up libxcb-shm0-dev:amd64 (1.14-2) ...
-Setting up libxt-dev:amd64 (1:1.1.5-1) ...
-Setting up libxcb-render0-dev:amd64 (1.14-2) ...
-Setting up libxext-dev:amd64 (2:1.3.4-0ubuntu1) ...
-Setting up libxrender-dev:amd64 (1:0.9.10-1) ...
-Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ...
-Processing triggers for libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.4) ...
-Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
-Setting up libcairo2-dev:amd64 (1.16.0-4ubuntu1) ...
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 1 / 14: BiocManager
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'http://cran.us.r-project.org/src/contrib/BiocManager_1.30.18.tar.gz'
-Content type 'application/x-gzip' length 289602 bytes (282 KB)
-==================================================
-downloaded 282 KB
-
-foundpkgs: BiocManager, /tmp/RtmpoYg5e0/downloaded_packages/BiocManager_1.30.18.tar.gz
-files: /tmp/RtmpoYg5e0/downloaded_packages/BiocManager_1.30.18.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpoYg5e0/downloaded_packages/BiocManager_1.30.18.tar.gz''
-
-The downloaded source packages are in
-	‘/tmp/RtmpoYg5e0/downloaded_packages’
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 2 / 14: devtools
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies ‘utf8’, ‘pillar’, ‘pkgconfig’, ‘vctrs’, ‘askpass’, ‘credentials’, ‘sys’, ‘zip’, ‘gitcreds’, ‘ini’, ‘fastmap’, ‘highr’, ‘xfun’, ‘diffobj’, ‘fansi’, ‘rematch2’, ‘tibble’, ‘clipr’, ‘crayon’, ‘curl’, ‘gert’, ‘gh’, ‘glue’, ‘jsonlite’, ‘purrr’, ‘rappdirs’, ‘rprojroot’, ‘whisker’, ‘yaml’, ‘processx’, ‘R6’, ‘mime’, ‘openssl’, ‘cachem’, ‘prettyunits’, ‘digest’, ‘xopen’, ‘brew’, ‘commonmark’, ‘knitr’, ‘stringi’, ‘stringr’, ‘xml2’, ‘cpp11’, ‘brio’, ‘evaluate’, ‘magrittr’, ‘praise’, ‘ps’, ‘waldo’, ‘usethis’, ‘callr’, ‘cli’, ‘desc’, ‘ellipsis’, ‘fs’, ‘httr’, ‘lifecycle’, ‘memoise’, ‘pkgbuild’, ‘pkgload’, ‘rcmdcheck’, ‘remotes’, ‘rlang’, ‘roxygen2’, ‘rstudioapi’, ‘rversions’, ‘sessioninfo’, ‘testthat’, ‘withr’
-
-trying URL 'http://cran.us.r-project.org/src/contrib/utf8_1.2.2.tar.gz'
-Content type 'application/x-gzip' length 240327 bytes (234 KB)
-==================================================
-downloaded 234 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/pillar_1.7.0.tar.gz'
-Content type 'application/x-gzip' length 529668 bytes (517 KB)
-==================================================
-downloaded 517 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/pkgconfig_2.0.3.tar.gz'
-Content type 'application/x-gzip' length 6080 bytes
-==================================================
-downloaded 6080 bytes
-
-trying URL 'http://cran.us.r-project.org/src/contrib/vctrs_0.4.1.tar.gz'
-Content type 'application/x-gzip' length 916782 bytes (895 KB)
-==================================================
-downloaded 895 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/askpass_1.1.tar.gz'
-Content type 'application/x-gzip' length 5730 bytes
-==================================================
-downloaded 5730 bytes
-
-trying URL 'http://cran.us.r-project.org/src/contrib/credentials_1.3.2.tar.gz'
-Content type 'application/x-gzip' length 230070 bytes (224 KB)
-==================================================
-downloaded 224 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/sys_3.4.tar.gz'
-Content type 'application/x-gzip' length 20138 bytes (19 KB)
-==================================================
-downloaded 19 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/zip_2.2.0.tar.gz'
-Content type 'application/x-gzip' length 114391 bytes (111 KB)
-==================================================
-downloaded 111 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/gitcreds_0.1.1.tar.gz'
-Content type 'application/x-gzip' length 61913 bytes (60 KB)
-==================================================
-downloaded 60 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/ini_0.3.1.tar.gz'
-Content type 'application/x-gzip' length 3488 bytes
-==================================================
-downloaded 3488 bytes
-
-trying URL 'http://cran.us.r-project.org/src/contrib/fastmap_1.1.0.tar.gz'
-Content type 'application/x-gzip' length 44277 bytes (43 KB)
-==================================================
-downloaded 43 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/highr_0.9.tar.gz'
-Content type 'application/x-gzip' length 15188 bytes (14 KB)
-==================================================
-downloaded 14 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/xfun_0.31.tar.gz'
-Content type 'application/x-gzip' length 126065 bytes (123 KB)
-==================================================
-downloaded 123 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/diffobj_0.3.5.tar.gz'
-Content type 'application/x-gzip' length 479276 bytes (468 KB)
-==================================================
-downloaded 468 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/fansi_1.0.3.tar.gz'
-Content type 'application/x-gzip' length 481163 bytes (469 KB)
-==================================================
-downloaded 469 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/rematch2_2.1.2.tar.gz'
-Content type 'application/x-gzip' length 13366 bytes (13 KB)
-==================================================
-downloaded 13 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/tibble_3.1.7.tar.gz'
-Content type 'application/x-gzip' length 674873 bytes (659 KB)
-==================================================
-downloaded 659 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/clipr_0.8.0.tar.gz'
-Content type 'application/x-gzip' length 21898 bytes (21 KB)
-==================================================
-downloaded 21 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/crayon_1.5.1.tar.gz'
-Content type 'application/x-gzip' length 40178 bytes (39 KB)
-==================================================
-downloaded 39 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/curl_4.3.2.tar.gz'
-Content type 'application/x-gzip' length 793345 bytes (774 KB)
-==================================================
-downloaded 774 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/gert_1.6.0.tar.gz'
-Content type 'application/x-gzip' length 117915 bytes (115 KB)
-==================================================
-downloaded 115 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/gh_1.3.0.tar.gz'
-Content type 'application/x-gzip' length 45619 bytes (44 KB)
-==================================================
-downloaded 44 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/glue_1.6.2.tar.gz'
-Content type 'application/x-gzip' length 106510 bytes (104 KB)
-==================================================
-downloaded 104 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/jsonlite_1.8.0.tar.gz'
-Content type 'application/x-gzip' length 1051625 bytes (1.0 MB)
-==================================================
-downloaded 1.0 MB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/purrr_0.3.4.tar.gz'
-Content type 'application/x-gzip' length 375062 bytes (366 KB)
-==================================================
-downloaded 366 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/rappdirs_0.3.3.tar.gz'
-Content type 'application/x-gzip' length 12288 bytes (12 KB)
-==================================================
-downloaded 12 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/rprojroot_2.0.3.tar.gz'
-Content type 'application/x-gzip' length 59939 bytes (58 KB)
-==================================================
-downloaded 58 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/whisker_0.4.tar.gz'
-Content type 'application/x-gzip' length 28574 bytes (27 KB)
-==================================================
-downloaded 27 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/yaml_2.3.5.tar.gz'
-Content type 'application/x-gzip' length 94535 bytes (92 KB)
-==================================================
-downloaded 92 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/processx_3.6.1.tar.gz'
-Content type 'application/x-gzip' length 148517 bytes (145 KB)
-==================================================
-downloaded 145 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/R6_2.5.1.tar.gz'
-Content type 'application/x-gzip' length 63422 bytes (61 KB)
-==================================================
-downloaded 61 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/mime_0.12.tar.gz'
-Content type 'application/x-gzip' length 12562 bytes (12 KB)
-==================================================
-downloaded 12 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/openssl_2.0.2.tar.gz'
-Content type 'application/x-gzip' length 1203211 bytes (1.1 MB)
-==================================================
-downloaded 1.1 MB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/cachem_1.0.6.tar.gz'
-Content type 'application/x-gzip' length 25413 bytes (24 KB)
-==================================================
-downloaded 24 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/prettyunits_1.1.1.tar.gz'
-Content type 'application/x-gzip' length 10366 bytes (10 KB)
-==================================================
-downloaded 10 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/digest_0.6.29.tar.gz'
-Content type 'application/x-gzip' length 162775 bytes (158 KB)
-==================================================
-downloaded 158 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/xopen_1.0.0.tar.gz'
-Content type 'application/x-gzip' length 11221 bytes (10 KB)
-==================================================
-downloaded 10 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/brew_1.0-7.tar.gz'
-Content type 'application/x-gzip' length 55517 bytes (54 KB)
-==================================================
-downloaded 54 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/commonmark_1.8.0.tar.gz'
-Content type 'application/x-gzip' length 139478 bytes (136 KB)
-==================================================
-downloaded 136 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/knitr_1.39.tar.gz'
-Content type 'application/x-gzip' length 898418 bytes (877 KB)
-==================================================
-downloaded 877 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/stringi_1.7.6.tar.gz'
-Content type 'application/x-gzip' length 7600716 bytes (7.2 MB)
-==================================================
-downloaded 7.2 MB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/stringr_1.4.0.tar.gz'
-Content type 'application/x-gzip' length 135777 bytes (132 KB)
-==================================================
-downloaded 132 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/xml2_1.3.3.tar.gz'
-Content type 'application/x-gzip' length 283965 bytes (277 KB)
-==================================================
-downloaded 277 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/cpp11_0.4.2.tar.gz'
-Content type 'application/x-gzip' length 317708 bytes (310 KB)
-==================================================
-downloaded 310 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/brio_1.1.3.tar.gz'
-Content type 'application/x-gzip' length 12629 bytes (12 KB)
-==================================================
-downloaded 12 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/evaluate_0.15.tar.gz'
-Content type 'application/x-gzip' length 25617 bytes (25 KB)
-==================================================
-downloaded 25 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/magrittr_2.0.3.tar.gz'
-Content type 'application/x-gzip' length 267074 bytes (260 KB)
-==================================================
-downloaded 260 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/praise_1.0.0.tar.gz'
-Content type 'application/x-gzip' length 6100 bytes
-==================================================
-downloaded 6100 bytes
-
-trying URL 'http://cran.us.r-project.org/src/contrib/ps_1.7.1.tar.gz'
-Content type 'application/x-gzip' length 128664 bytes (125 KB)
-==================================================
-downloaded 125 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/waldo_0.4.0.tar.gz'
-Content type 'application/x-gzip' length 37556 bytes (36 KB)
-==================================================
-downloaded 36 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/usethis_2.1.6.tar.gz'
-Content type 'application/x-gzip' length 342349 bytes (334 KB)
-==================================================
-downloaded 334 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/callr_3.7.0.tar.gz'
-Content type 'application/x-gzip' length 74518 bytes (72 KB)
-==================================================
-downloaded 72 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/cli_3.3.0.tar.gz'
-Content type 'application/x-gzip' length 495823 bytes (484 KB)
-==================================================
-downloaded 484 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/desc_1.4.1.tar.gz'
-Content type 'application/x-gzip' length 80670 bytes (78 KB)
-==================================================
-downloaded 78 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/ellipsis_0.3.2.tar.gz'
-Content type 'application/x-gzip' length 8066 bytes
-==================================================
-downloaded 8066 bytes
-
-trying URL 'http://cran.us.r-project.org/src/contrib/fs_1.5.2.tar.gz'
-Content type 'application/x-gzip' length 793627 bytes (775 KB)
-==================================================
-downloaded 775 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/httr_1.4.3.tar.gz'
-Content type 'application/x-gzip' length 161122 bytes (157 KB)
-==================================================
-downloaded 157 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/lifecycle_1.0.1.tar.gz'
-Content type 'application/x-gzip' length 99716 bytes (97 KB)
-==================================================
-downloaded 97 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/memoise_2.0.1.tar.gz'
-Content type 'application/x-gzip' length 17852 bytes (17 KB)
-==================================================
-downloaded 17 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/pkgbuild_1.3.1.tar.gz'
-Content type 'application/x-gzip' length 31937 bytes (31 KB)
-==================================================
-downloaded 31 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/pkgload_1.3.0.tar.gz'
-Content type 'application/x-gzip' length 76008 bytes (74 KB)
-==================================================
-downloaded 74 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/rcmdcheck_1.4.0.tar.gz'
-Content type 'application/x-gzip' length 73522 bytes (71 KB)
-==================================================
-downloaded 71 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/remotes_2.4.2.tar.gz'
-Content type 'application/x-gzip' length 152540 bytes (148 KB)
-==================================================
-downloaded 148 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/rlang_1.0.3.tar.gz'
-Content type 'application/x-gzip' length 740744 bytes (723 KB)
-==================================================
-downloaded 723 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/roxygen2_7.2.0.tar.gz'
-Content type 'application/x-gzip' length 277678 bytes (271 KB)
-==================================================
-downloaded 271 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/rstudioapi_0.13.tar.gz'
-Content type 'application/x-gzip' length 110472 bytes (107 KB)
-==================================================
-downloaded 107 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/rversions_2.1.1.tar.gz'
-Content type 'application/x-gzip' length 42064 bytes (41 KB)
-==================================================
-downloaded 41 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/sessioninfo_1.2.2.tar.gz'
-Content type 'application/x-gzip' length 170924 bytes (166 KB)
-==================================================
-downloaded 166 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/testthat_3.1.4.tar.gz'
-Content type 'application/x-gzip' length 700919 bytes (684 KB)
-==================================================
-downloaded 684 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/withr_2.5.0.tar.gz'
-Content type 'application/x-gzip' length 102089 bytes (99 KB)
-==================================================
-downloaded 99 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/devtools_2.4.3.tar.gz'
-Content type 'application/x-gzip' length 372413 bytes (363 KB)
-==================================================
-downloaded 363 KB
-
-foundpkgs: utf8, pillar, pkgconfig, vctrs, askpass, credentials, sys, zip, gitcreds, ini, fastmap, highr, xfun, diffobj, fansi, rematch2, tibble, clipr, crayon, curl, gert, gh, glue, jsonlite, purrr, rappdirs, rprojroot, whisker, yaml, processx, R6, mime, openssl, cachem, prettyunits, digest, xopen, brew, commonmark, knitr, stringi, stringr, xml2, cpp11, brio, evaluate, magrittr, praise, ps, waldo, usethis, callr, cli, desc, ellipsis, fs, httr, lifecycle, memoise, pkgbuild, pkgload, rcmdcheck, remotes, rlang, roxygen2, rstudioapi, rversions, sessioninfo, testthat, withr, devtools, /tmp/RtmpokYjfu/downloaded_packages/utf8_1.2.2.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/pillar_1.7.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/pkgconfig_2.0.3.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/vctrs_0.4.1.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/askpass_1.1.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/credentials_1.3.2.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/sys_3.4.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/zip_2.2.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/gitcreds_0.1.1.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/ini_0.3.1.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/fastmap_1.1.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/highr_0.9.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/xfun_0.31.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/diffobj_0.3.5.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/fansi_1.0.3.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/rematch2_2.1.2.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/tibble_3.1.7.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/clipr_0.8.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/crayon_1.5.1.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/curl_4.3.2.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/gert_1.6.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/gh_1.3.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/glue_1.6.2.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/jsonlite_1.8.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/purrr_0.3.4.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/rappdirs_0.3.3.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/rprojroot_2.0.3.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/whisker_0.4.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/yaml_2.3.5.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/processx_3.6.1.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/R6_2.5.1.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/mime_0.12.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/openssl_2.0.2.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/cachem_1.0.6.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/prettyunits_1.1.1.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/digest_0.6.29.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/xopen_1.0.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/brew_1.0-7.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/commonmark_1.8.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/knitr_1.39.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/stringi_1.7.6.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/stringr_1.4.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/xml2_1.3.3.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/cpp11_0.4.2.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/brio_1.1.3.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/evaluate_0.15.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/magrittr_2.0.3.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/praise_1.0.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/ps_1.7.1.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/waldo_0.4.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/usethis_2.1.6.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/callr_3.7.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/cli_3.3.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/desc_1.4.1.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/ellipsis_0.3.2.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/fs_1.5.2.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/httr_1.4.3.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/lifecycle_1.0.1.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/memoise_2.0.1.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/pkgbuild_1.3.1.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/pkgload_1.3.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/rcmdcheck_1.4.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/remotes_2.4.2.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/rlang_1.0.3.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/roxygen2_7.2.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/rstudioapi_0.13.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/rversions_2.1.1.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/sessioninfo_1.2.2.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/testthat_3.1.4.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/withr_2.5.0.tar.gz, /tmp/RtmpokYjfu/downloaded_packages/devtools_2.4.3.tar.gz
-files: /tmp/RtmpokYjfu/downloaded_packages/utf8_1.2.2.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/pillar_1.7.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/pkgconfig_2.0.3.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/vctrs_0.4.1.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/askpass_1.1.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/credentials_1.3.2.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/sys_3.4.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/zip_2.2.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/gitcreds_0.1.1.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/ini_0.3.1.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/fastmap_1.1.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/highr_0.9.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/xfun_0.31.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/diffobj_0.3.5.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/fansi_1.0.3.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/rematch2_2.1.2.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/tibble_3.1.7.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/clipr_0.8.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/crayon_1.5.1.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/curl_4.3.2.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/gert_1.6.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/gh_1.3.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/glue_1.6.2.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/jsonlite_1.8.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/purrr_0.3.4.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/rappdirs_0.3.3.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/rprojroot_2.0.3.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/whisker_0.4.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/yaml_2.3.5.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/processx_3.6.1.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/R6_2.5.1.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/mime_0.12.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/openssl_2.0.2.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/cachem_1.0.6.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/prettyunits_1.1.1.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/digest_0.6.29.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/xopen_1.0.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/brew_1.0-7.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/commonmark_1.8.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/knitr_1.39.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/stringi_1.7.6.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/stringr_1.4.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/xml2_1.3.3.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/cpp11_0.4.2.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/brio_1.1.3.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/evaluate_0.15.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/magrittr_2.0.3.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/praise_1.0.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/ps_1.7.1.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/waldo_0.4.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/usethis_2.1.6.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/callr_3.7.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/cli_3.3.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/desc_1.4.1.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/ellipsis_0.3.2.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/fs_1.5.2.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/httr_1.4.3.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/lifecycle_1.0.1.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/memoise_2.0.1.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/pkgbuild_1.3.1.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/pkgload_1.3.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/rcmdcheck_1.4.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/remotes_2.4.2.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/rlang_1.0.3.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/roxygen2_7.2.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/rstudioapi_0.13.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/rversions_2.1.1.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/sessioninfo_1.2.2.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/testthat_3.1.4.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/withr_2.5.0.tar.gz, 
-	/tmp/RtmpokYjfu/downloaded_packages/devtools_2.4.3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/utf8_1.2.2.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/pkgconfig_2.0.3.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/sys_3.4.tar.gz''
-4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/zip_2.2.0.tar.gz''
-5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/gitcreds_0.1.1.tar.gz''
-6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/ini_0.3.1.tar.gz''
-7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/fastmap_1.1.0.tar.gz''
-8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/xfun_0.31.tar.gz''
-9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/fansi_1.0.3.tar.gz''
-10): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/clipr_0.8.0.tar.gz''
-11): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/crayon_1.5.1.tar.gz''
-12): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/curl_4.3.2.tar.gz''
-13): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/glue_1.6.2.tar.gz''
-14): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/jsonlite_1.8.0.tar.gz''
-15): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/rappdirs_0.3.3.tar.gz''
-16): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/rprojroot_2.0.3.tar.gz''
-17): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/whisker_0.4.tar.gz''
-18): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/yaml_2.3.5.tar.gz''
-19): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/R6_2.5.1.tar.gz''
-20): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/mime_0.12.tar.gz''
-21): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/prettyunits_1.1.1.tar.gz''
-22): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/digest_0.6.29.tar.gz''
-23): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/brew_1.0-7.tar.gz''
-24): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/commonmark_1.8.0.tar.gz''
-25): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/stringi_1.7.6.tar.gz''
-26): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/xml2_1.3.3.tar.gz''
-27): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/cpp11_0.4.2.tar.gz''
-28): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/brio_1.1.3.tar.gz''
-29): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/evaluate_0.15.tar.gz''
-30): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/magrittr_2.0.3.tar.gz''
-31): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/praise_1.0.0.tar.gz''
-32): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/ps_1.7.1.tar.gz''
-33): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/fs_1.5.2.tar.gz''
-34): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/remotes_2.4.2.tar.gz''
-35): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/rlang_1.0.3.tar.gz''
-36): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/rstudioapi_0.13.tar.gz''
-37): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/withr_2.5.0.tar.gz''
-38): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/askpass_1.1.tar.gz''
-39): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/highr_0.9.tar.gz''
-40): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/diffobj_0.3.5.tar.gz''
-41): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/purrr_0.3.4.tar.gz''
-42): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/processx_3.6.1.tar.gz''
-43): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/cachem_1.0.6.tar.gz''
-44): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/stringr_1.4.0.tar.gz''
-45): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/cli_3.3.0.tar.gz''
-46): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/ellipsis_0.3.2.tar.gz''
-47): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/lifecycle_1.0.1.tar.gz''
-48): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/rversions_2.1.1.tar.gz''
-49): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/vctrs_0.4.1.tar.gz''
-50): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/openssl_2.0.2.tar.gz''
-51): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/xopen_1.0.0.tar.gz''
-52): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/knitr_1.39.tar.gz''
-53): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/callr_3.7.0.tar.gz''
-54): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/desc_1.4.1.tar.gz''
-55): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/memoise_2.0.1.tar.gz''
-56): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/sessioninfo_1.2.2.tar.gz''
-57): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/pillar_1.7.0.tar.gz''
-58): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/credentials_1.3.2.tar.gz''
-59): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/httr_1.4.3.tar.gz''
-60): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/pkgbuild_1.3.1.tar.gz''
-61): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/pkgload_1.3.0.tar.gz''
-62): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/tibble_3.1.7.tar.gz''
-63): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/gert_1.6.0.tar.gz''
-64): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/gh_1.3.0.tar.gz''
-65): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/rcmdcheck_1.4.0.tar.gz''
-66): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/roxygen2_7.2.0.tar.gz''
-67): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/rematch2_2.1.2.tar.gz''
-68): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/usethis_2.1.6.tar.gz''
-69): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/waldo_0.4.0.tar.gz''
-70): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/testthat_3.1.4.tar.gz''
-71): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/devtools_2.4.3.tar.gz''
-
-The downloaded source packages are in
-	‘/tmp/RtmpokYjfu/downloaded_packages’
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 3 / 14: Cairo
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'http://cran.us.r-project.org/src/contrib/Cairo_1.5-15.tar.gz'
-Content type 'application/x-gzip' length 91378 bytes (89 KB)
-==================================================
-downloaded 89 KB
-
-foundpkgs: Cairo, /tmp/RtmpE9tDuY/downloaded_packages/Cairo_1.5-15.tar.gz
-files: /tmp/RtmpE9tDuY/downloaded_packages/Cairo_1.5-15.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpE9tDuY/downloaded_packages/Cairo_1.5-15.tar.gz''
-
-The downloaded source packages are in
-	‘/tmp/RtmpE9tDuY/downloaded_packages’
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 4 / 14: dplyr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies ‘generics’, ‘tidyselect’
-
-trying URL 'http://cran.us.r-project.org/src/contrib/generics_0.1.2.tar.gz'
-Content type 'application/x-gzip' length 123325 bytes (120 KB)
-==================================================
-downloaded 120 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/tidyselect_1.1.2.tar.gz'
-Content type 'application/x-gzip' length 92085 bytes (89 KB)
-==================================================
-downloaded 89 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/dplyr_1.0.9.tar.gz'
-Content type 'application/x-gzip' length 957637 bytes (935 KB)
-==================================================
-downloaded 935 KB
-
-foundpkgs: generics, tidyselect, dplyr, /tmp/RtmpsNavcE/downloaded_packages/generics_0.1.2.tar.gz, /tmp/RtmpsNavcE/downloaded_packages/tidyselect_1.1.2.tar.gz, /tmp/RtmpsNavcE/downloaded_packages/dplyr_1.0.9.tar.gz
-files: /tmp/RtmpsNavcE/downloaded_packages/generics_0.1.2.tar.gz, 
-	/tmp/RtmpsNavcE/downloaded_packages/tidyselect_1.1.2.tar.gz, 
-	/tmp/RtmpsNavcE/downloaded_packages/dplyr_1.0.9.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsNavcE/downloaded_packages/generics_0.1.2.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsNavcE/downloaded_packages/tidyselect_1.1.2.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsNavcE/downloaded_packages/dplyr_1.0.9.tar.gz''
-
-The downloaded source packages are in
-	‘/tmp/RtmpsNavcE/downloaded_packages’
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 5 / 14: ggplot2
-
-================
-
-
-
-
-now dyn.load("/usr/local/lib/R/site-library/fs/libs/fs.so") ...
-now dyn.load("/usr/local/lib/R/site-library/cli/libs/cli.so") ...
-now dyn.load("/usr/local/lib/R/site-library/rlang/libs/rlang.so") ...
-now dyn.load("/usr/local/lib/R/site-library/ellipsis/libs/ellipsis.so") ...
-now dyn.load("/usr/local/lib/R/site-library/fastmap/libs/fastmap.so") ...
-now dyn.load("/usr/local/lib/R/site-library/cachem/libs/cachem.so") ...
-now dyn.load("/usr/local/lib/R/site-library/processx/libs/processx.so") ...
-now dyn.load("/usr/local/lib/R/site-library/ps/libs/ps.so") ...
-now dyn.load("/usr/lib/R/library/tools/libs/tools.so") ...
-now dyn.load("/usr/local/lib/R/site-library/glue/libs/glue.so") ...
-now dyn.load("/usr/local/lib/R/site-library/magrittr/libs/magrittr.so") ...
-now dyn.load("/usr/local/lib/R/site-library/purrr/libs/purrr.so") ...
-Downloading package from url: http://cran.us.r-project.org/src/contrib/Archive/ggplot2/ggplot2_3.3.3.tar.gz
-Installing 9 packages: colorspace, viridisLite, RColorBrewer, munsell, labeling, farver, scales, isoband, gtable
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'http://cran.us.r-project.org/src/contrib/colorspace_2.0-3.tar.gz'
-Content type 'application/x-gzip' length 2199185 bytes (2.1 MB)
-==================================================
-downloaded 2.1 MB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/viridisLite_0.4.0.tar.gz'
-Content type 'application/x-gzip' length 1267080 bytes (1.2 MB)
-==================================================
-downloaded 1.2 MB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/RColorBrewer_1.1-3.tar.gz'
-Content type 'application/x-gzip' length 11638 bytes (11 KB)
-==================================================
-downloaded 11 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/munsell_0.5.0.tar.gz'
-Content type 'application/x-gzip' length 182653 bytes (178 KB)
-==================================================
-downloaded 178 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/labeling_0.4.2.tar.gz'
-Content type 'application/x-gzip' length 10156 bytes
-==================================================
-downloaded 10156 bytes
-
-trying URL 'http://cran.us.r-project.org/src/contrib/farver_2.1.0.tar.gz'
-Content type 'application/x-gzip' length 1281864 bytes (1.2 MB)
-==================================================
-downloaded 1.2 MB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/scales_1.2.0.tar.gz'
-Content type 'application/x-gzip' length 270188 bytes (263 KB)
-==================================================
-downloaded 263 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/isoband_0.2.5.tar.gz'
-Content type 'application/x-gzip' length 1671911 bytes (1.6 MB)
-==================================================
-downloaded 1.6 MB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/gtable_0.3.0.tar.gz'
-Content type 'application/x-gzip' length 368081 bytes (359 KB)
-==================================================
-downloaded 359 KB
-
-foundpkgs: colorspace, viridisLite, RColorBrewer, munsell, labeling, farver, scales, isoband, gtable, /tmp/Rtmpyg6cOg/downloaded_packages/colorspace_2.0-3.tar.gz, /tmp/Rtmpyg6cOg/downloaded_packages/viridisLite_0.4.0.tar.gz, /tmp/Rtmpyg6cOg/downloaded_packages/RColorBrewer_1.1-3.tar.gz, /tmp/Rtmpyg6cOg/downloaded_packages/munsell_0.5.0.tar.gz, /tmp/Rtmpyg6cOg/downloaded_packages/labeling_0.4.2.tar.gz, /tmp/Rtmpyg6cOg/downloaded_packages/farver_2.1.0.tar.gz, /tmp/Rtmpyg6cOg/downloaded_packages/scales_1.2.0.tar.gz, /tmp/Rtmpyg6cOg/downloaded_packages/isoband_0.2.5.tar.gz, /tmp/Rtmpyg6cOg/downloaded_packages/gtable_0.3.0.tar.gz
-files: /tmp/Rtmpyg6cOg/downloaded_packages/colorspace_2.0-3.tar.gz, 
-	/tmp/Rtmpyg6cOg/downloaded_packages/viridisLite_0.4.0.tar.gz, 
-	/tmp/Rtmpyg6cOg/downloaded_packages/RColorBrewer_1.1-3.tar.gz, 
-	/tmp/Rtmpyg6cOg/downloaded_packages/munsell_0.5.0.tar.gz, 
-	/tmp/Rtmpyg6cOg/downloaded_packages/labeling_0.4.2.tar.gz, 
-	/tmp/Rtmpyg6cOg/downloaded_packages/farver_2.1.0.tar.gz, 
-	/tmp/Rtmpyg6cOg/downloaded_packages/scales_1.2.0.tar.gz, 
-	/tmp/Rtmpyg6cOg/downloaded_packages/isoband_0.2.5.tar.gz, 
-	/tmp/Rtmpyg6cOg/downloaded_packages/gtable_0.3.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyg6cOg/downloaded_packages/colorspace_2.0-3.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyg6cOg/downloaded_packages/viridisLite_0.4.0.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyg6cOg/downloaded_packages/RColorBrewer_1.1-3.tar.gz''
-4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyg6cOg/downloaded_packages/labeling_0.4.2.tar.gz''
-5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyg6cOg/downloaded_packages/farver_2.1.0.tar.gz''
-6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyg6cOg/downloaded_packages/isoband_0.2.5.tar.gz''
-7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyg6cOg/downloaded_packages/gtable_0.3.0.tar.gz''
-8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyg6cOg/downloaded_packages/munsell_0.5.0.tar.gz''
-9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyg6cOg/downloaded_packages/scales_1.2.0.tar.gz''
-
-The downloaded source packages are in
-	‘/tmp/Rtmpyg6cOg/downloaded_packages’
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyg6cOg/remotes70ee123f08c7/ggplot2''
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 6 / 14: HiCcompare
-
-================
-
-
-
-
-now dyn.load("/usr/lib/R/library/tools/libs/tools.so") ...
-Bioconductor version 3.14 (BiocManager 1.30.18), R 4.1.2 (2021-11-01)
-Installing package(s) 'BiocVersion', 'HiCcompare'
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies ‘formatR’, ‘limma’, ‘listenv’, ‘parallelly’, ‘MatrixGenerics’, ‘DelayedArray’, ‘RCurl’, ‘GenomeInfoDbData’, ‘zlibbioc’, ‘lambda.r’, ‘futile.options’, ‘marray’, ‘impute’, ‘snowfall’, ‘R.oo’, ‘R.methodsS3’, ‘Biostrings’, ‘bitops’, ‘Rhtslib’, ‘future’, ‘globals’, ‘SummarizedExperiment’, ‘Rcpp’, ‘BiocGenerics’, ‘GenomeInfoDb’, ‘XVector’, ‘futile.logger’, ‘snow’, ‘BH’, ‘Biobase’, ‘CGHbase’, ‘CGHcall’, ‘DNAcopy’, ‘matrixStats’, ‘R.utils’, ‘Rsamtools’, ‘future.apply’, ‘Rhdf5lib’, ‘rhdf5filters’, ‘data.table’, ‘gridExtra’, ‘InteractionSet’, ‘GenomicRanges’, ‘IRanges’, ‘S4Vectors’, ‘BiocParallel’, ‘QDNAseq’, ‘pheatmap’, ‘gtools’, ‘rhdf5’
-
-trying URL 'https://cloud.r-project.org/src/contrib/formatR_1.12.tar.gz'
-Content type 'application/x-gzip' length 95944 bytes (93 KB)
-==================================================
-downloaded 93 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/limma_3.50.3.tar.gz'
-Content type 'application/x-gzip' length 1559281 bytes (1.5 MB)
-==================================================
-downloaded 1.5 MB
-
-trying URL 'https://cloud.r-project.org/src/contrib/listenv_0.8.0.tar.gz'
-Content type 'application/x-gzip' length 36762 bytes (35 KB)
-==================================================
-downloaded 35 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/parallelly_1.32.0.tar.gz'
-Content type 'application/x-gzip' length 124712 bytes (121 KB)
-==================================================
-downloaded 121 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/MatrixGenerics_1.6.0.tar.gz'
-Content type 'application/x-gzip' length 28270 bytes (27 KB)
-==================================================
-downloaded 27 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/DelayedArray_0.20.0.tar.gz'
-Content type 'application/x-gzip' length 676428 bytes (660 KB)
-==================================================
-downloaded 660 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/RCurl_1.98-1.7.tar.gz'
-Content type 'application/x-gzip' length 731394 bytes (714 KB)
-==================================================
-downloaded 714 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/data/annotation/src/contrib/GenomeInfoDbData_1.2.7.tar.gz'
-Content type 'application/x-gzip' length 11193674 bytes (10.7 MB)
-==================================================
-downloaded 10.7 MB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/zlibbioc_1.40.0.tar.gz'
-Content type 'application/x-gzip' length 257409 bytes (251 KB)
-==================================================
-downloaded 251 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/lambda.r_1.2.4.tar.gz'
-Content type 'application/x-gzip' length 25666 bytes (25 KB)
-==================================================
-downloaded 25 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/futile.options_1.0.1.tar.gz'
-Content type 'application/x-gzip' length 3919 bytes
-==================================================
-downloaded 3919 bytes
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/marray_1.72.0.tar.gz'
-Content type 'application/x-gzip' length 5160434 bytes (4.9 MB)
-==================================================
-downloaded 4.9 MB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/impute_1.68.0.tar.gz'
-Content type 'application/x-gzip' length 641569 bytes (626 KB)
-==================================================
-downloaded 626 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/snowfall_1.84-6.1.tar.gz'
-Content type 'application/x-gzip' length 344407 bytes (336 KB)
-==================================================
-downloaded 336 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/R.oo_1.25.0.tar.gz'
-Content type 'application/x-gzip' length 384384 bytes (375 KB)
-==================================================
-downloaded 375 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/R.methodsS3_1.8.2.tar.gz'
-Content type 'application/x-gzip' length 24131 bytes (23 KB)
-==================================================
-downloaded 23 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Biostrings_2.62.0.tar.gz'
-Content type 'application/x-gzip' length 12645827 bytes (12.1 MB)
-==================================================
-downloaded 12.1 MB
-
-trying URL 'https://cloud.r-project.org/src/contrib/bitops_1.0-7.tar.gz'
-Content type 'application/x-gzip' length 10809 bytes (10 KB)
-==================================================
-downloaded 10 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Rhtslib_1.26.0.tar.gz'
-Content type 'application/x-gzip' length 1470165 bytes (1.4 MB)
-==================================================
-downloaded 1.4 MB
-
-trying URL 'https://cloud.r-project.org/src/contrib/future_1.26.1.tar.gz'
-Content type 'application/x-gzip' length 365509 bytes (356 KB)
-==================================================
-downloaded 356 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/globals_0.15.1.tar.gz'
-Content type 'application/x-gzip' length 33503 bytes (32 KB)
-==================================================
-downloaded 32 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/SummarizedExperiment_1.24.0.tar.gz'
-Content type 'application/x-gzip' length 1524667 bytes (1.5 MB)
-==================================================
-downloaded 1.5 MB
-
-trying URL 'https://cloud.r-project.org/src/contrib/Rcpp_1.0.8.3.tar.gz'
-Content type 'application/x-gzip' length 3086192 bytes (2.9 MB)
-==================================================
-downloaded 2.9 MB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/BiocGenerics_0.40.0.tar.gz'
-Content type 'application/x-gzip' length 45969 bytes (44 KB)
-==================================================
-downloaded 44 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/GenomeInfoDb_1.30.1.tar.gz'
-Content type 'application/x-gzip' length 3457147 bytes (3.3 MB)
-==================================================
-downloaded 3.3 MB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/XVector_0.34.0.tar.gz'
-Content type 'application/x-gzip' length 67783 bytes (66 KB)
-==================================================
-downloaded 66 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/futile.logger_1.4.3.tar.gz'
-Content type 'application/x-gzip' length 17456 bytes (17 KB)
-==================================================
-downloaded 17 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/snow_0.4-4.tar.gz'
-Content type 'application/x-gzip' length 20464 bytes (19 KB)
-==================================================
-downloaded 19 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/BH_1.78.0-0.tar.gz'
-Content type 'application/x-gzip' length 13269768 bytes (12.7 MB)
-==================================================
-downloaded 12.7 MB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Biobase_2.54.0.tar.gz'
-Content type 'application/x-gzip' length 1641111 bytes (1.6 MB)
-==================================================
-downloaded 1.6 MB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/CGHbase_1.54.0.tar.gz'
-Content type 'application/x-gzip' length 868353 bytes (848 KB)
-==================================================
-downloaded 848 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/CGHcall_2.56.0.tar.gz'
-Content type 'application/x-gzip' length 379558 bytes (370 KB)
-==================================================
-downloaded 370 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/DNAcopy_1.68.0.tar.gz'
-Content type 'application/x-gzip' length 319512 bytes (312 KB)
-==================================================
-downloaded 312 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/matrixStats_0.62.0.tar.gz'
-Content type 'application/x-gzip' length 201651 bytes (196 KB)
-==================================================
-downloaded 196 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/R.utils_2.12.0.tar.gz'
-Content type 'application/x-gzip' length 363986 bytes (355 KB)
-==================================================
-downloaded 355 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Rsamtools_2.10.0.tar.gz'
-Content type 'application/x-gzip' length 2870706 bytes (2.7 MB)
-==================================================
-downloaded 2.7 MB
-
-trying URL 'https://cloud.r-project.org/src/contrib/future.apply_1.9.0.tar.gz'
-Content type 'application/x-gzip' length 64200 bytes (62 KB)
-==================================================
-downloaded 62 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Rhdf5lib_1.16.0.tar.gz'
-Content type 'application/x-gzip' length 9989467 bytes (9.5 MB)
-==================================================
-downloaded 9.5 MB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/rhdf5filters_1.6.0.tar.gz'
-Content type 'application/x-gzip' length 854552 bytes (834 KB)
-==================================================
-downloaded 834 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/data.table_1.14.2.tar.gz'
-Content type 'application/x-gzip' length 5301817 bytes (5.1 MB)
-==================================================
-downloaded 5.1 MB
-
-trying URL 'https://cloud.r-project.org/src/contrib/gridExtra_2.3.tar.gz'
-Content type 'application/x-gzip' length 1062844 bytes (1.0 MB)
-==================================================
-downloaded 1.0 MB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/InteractionSet_1.22.0.tar.gz'
-Content type 'application/x-gzip' length 385508 bytes (376 KB)
-==================================================
-downloaded 376 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/GenomicRanges_1.46.1.tar.gz'
-Content type 'application/x-gzip' length 1171939 bytes (1.1 MB)
-==================================================
-downloaded 1.1 MB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/IRanges_2.28.0.tar.gz'
-Content type 'application/x-gzip' length 455647 bytes (444 KB)
-==================================================
-downloaded 444 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/S4Vectors_0.32.4.tar.gz'
-Content type 'application/x-gzip' length 668558 bytes (652 KB)
-==================================================
-downloaded 652 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/BiocParallel_1.28.3.tar.gz'
-Content type 'application/x-gzip' length 883999 bytes (863 KB)
-==================================================
-downloaded 863 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/QDNAseq_1.30.0.tar.gz'
-Content type 'application/x-gzip' length 1057078 bytes (1.0 MB)
-==================================================
-downloaded 1.0 MB
-
-trying URL 'https://cloud.r-project.org/src/contrib/pheatmap_1.0.12.tar.gz'
-Content type 'application/x-gzip' length 15071 bytes (14 KB)
-==================================================
-downloaded 14 KB
-
-trying URL 'https://cloud.r-project.org/src/contrib/gtools_3.9.2.2.tar.gz'
-Content type 'application/x-gzip' length 223736 bytes (218 KB)
-==================================================
-downloaded 218 KB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/rhdf5_2.38.1.tar.gz'
-Content type 'application/x-gzip' length 1231762 bytes (1.2 MB)
-==================================================
-downloaded 1.2 MB
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/BiocVersion_3.14.0.tar.gz'
-Content type 'application/x-gzip' length 969 bytes
-==================================================
-downloaded 969 bytes
-
-trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/HiCcompare_1.16.0.tar.gz'
-Content type 'application/x-gzip' length 3714564 bytes (3.5 MB)
-==================================================
-downloaded 3.5 MB
-
-foundpkgs: formatR, limma, listenv, parallelly, MatrixGenerics, DelayedArray, RCurl, GenomeInfoDbData, zlibbioc, lambda.r, futile.options, marray, impute, snowfall, R.oo, R.methodsS3, Biostrings, bitops, Rhtslib, future, globals, SummarizedExperiment, Rcpp, BiocGenerics, GenomeInfoDb, XVector, futile.logger, snow, BH, Biobase, CGHbase, CGHcall, DNAcopy, matrixStats, R.utils, Rsamtools, future.apply, Rhdf5lib, rhdf5filters, data.table, gridExtra, InteractionSet, GenomicRanges, IRanges, S4Vectors, BiocParallel, QDNAseq, pheatmap, gtools, rhdf5, BiocVersion, HiCcompare, /tmp/Rtmpi50vdq/downloaded_packages/formatR_1.12.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/limma_3.50.3.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/listenv_0.8.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/parallelly_1.32.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/MatrixGenerics_1.6.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/DelayedArray_0.20.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/RCurl_1.98-1.7.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/GenomeInfoDbData_1.2.7.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/zlibbioc_1.40.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/lambda.r_1.2.4.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/futile.options_1.0.1.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/marray_1.72.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/impute_1.68.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/snowfall_1.84-6.1.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/R.oo_1.25.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/R.methodsS3_1.8.2.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/Biostrings_2.62.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/bitops_1.0-7.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/Rhtslib_1.26.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/future_1.26.1.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/globals_0.15.1.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/SummarizedExperiment_1.24.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/Rcpp_1.0.8.3.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/BiocGenerics_0.40.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/GenomeInfoDb_1.30.1.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/XVector_0.34.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/futile.logger_1.4.3.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/snow_0.4-4.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/BH_1.78.0-0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/Biobase_2.54.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/CGHbase_1.54.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/CGHcall_2.56.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/DNAcopy_1.68.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/matrixStats_0.62.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/R.utils_2.12.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/Rsamtools_2.10.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/future.apply_1.9.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/Rhdf5lib_1.16.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/rhdf5filters_1.6.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/data.table_1.14.2.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/gridExtra_2.3.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/InteractionSet_1.22.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/GenomicRanges_1.46.1.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/IRanges_2.28.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/S4Vectors_0.32.4.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/BiocParallel_1.28.3.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/QDNAseq_1.30.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/pheatmap_1.0.12.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/gtools_3.9.2.2.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/rhdf5_2.38.1.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/BiocVersion_3.14.0.tar.gz, /tmp/Rtmpi50vdq/downloaded_packages/HiCcompare_1.16.0.tar.gz
-files: /tmp/Rtmpi50vdq/downloaded_packages/formatR_1.12.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/limma_3.50.3.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/listenv_0.8.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/parallelly_1.32.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/MatrixGenerics_1.6.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/DelayedArray_0.20.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/RCurl_1.98-1.7.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/GenomeInfoDbData_1.2.7.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/zlibbioc_1.40.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/lambda.r_1.2.4.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/futile.options_1.0.1.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/marray_1.72.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/impute_1.68.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/snowfall_1.84-6.1.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/R.oo_1.25.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/R.methodsS3_1.8.2.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/Biostrings_2.62.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/bitops_1.0-7.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/Rhtslib_1.26.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/future_1.26.1.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/globals_0.15.1.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/SummarizedExperiment_1.24.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/Rcpp_1.0.8.3.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/BiocGenerics_0.40.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/GenomeInfoDb_1.30.1.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/XVector_0.34.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/futile.logger_1.4.3.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/snow_0.4-4.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/BH_1.78.0-0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/Biobase_2.54.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/CGHbase_1.54.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/CGHcall_2.56.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/DNAcopy_1.68.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/matrixStats_0.62.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/R.utils_2.12.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/Rsamtools_2.10.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/future.apply_1.9.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/Rhdf5lib_1.16.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/rhdf5filters_1.6.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/data.table_1.14.2.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/gridExtra_2.3.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/InteractionSet_1.22.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/GenomicRanges_1.46.1.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/IRanges_2.28.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/S4Vectors_0.32.4.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/BiocParallel_1.28.3.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/QDNAseq_1.30.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/pheatmap_1.0.12.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/gtools_3.9.2.2.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/rhdf5_2.38.1.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/BiocVersion_3.14.0.tar.gz, 
-	/tmp/Rtmpi50vdq/downloaded_packages/HiCcompare_1.16.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/formatR_1.12.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/limma_3.50.3.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/listenv_0.8.0.tar.gz''
-4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/parallelly_1.32.0.tar.gz''
-5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/GenomeInfoDbData_1.2.7.tar.gz''
-6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/zlibbioc_1.40.0.tar.gz''
-7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/futile.options_1.0.1.tar.gz''
-8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/impute_1.68.0.tar.gz''
-9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/R.methodsS3_1.8.2.tar.gz''
-10): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/bitops_1.0-7.tar.gz''
-11): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/globals_0.15.1.tar.gz''
-12): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/Rcpp_1.0.8.3.tar.gz''
-13): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/BiocGenerics_0.40.0.tar.gz''
-14): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/snow_0.4-4.tar.gz''
-15): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/BH_1.78.0-0.tar.gz''
-16): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/DNAcopy_1.68.0.tar.gz''
-17): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/matrixStats_0.62.0.tar.gz''
-18): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/Rhdf5lib_1.16.0.tar.gz''
-19): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/data.table_1.14.2.tar.gz''
-20): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/gridExtra_2.3.tar.gz''
-21): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/pheatmap_1.0.12.tar.gz''
-22): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/gtools_3.9.2.2.tar.gz''
-23): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/BiocVersion_3.14.0.tar.gz''
-24): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/MatrixGenerics_1.6.0.tar.gz''
-25): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/RCurl_1.98-1.7.tar.gz''
-26): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/lambda.r_1.2.4.tar.gz''
-27): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/marray_1.72.0.tar.gz''
-28): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/snowfall_1.84-6.1.tar.gz''
-29): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/R.oo_1.25.0.tar.gz''
-30): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/Rhtslib_1.26.0.tar.gz''
-31): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/future_1.26.1.tar.gz''
-32): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/Biobase_2.54.0.tar.gz''
-33): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/rhdf5filters_1.6.0.tar.gz''
-34): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/S4Vectors_0.32.4.tar.gz''
-35): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/futile.logger_1.4.3.tar.gz''
-36): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/CGHbase_1.54.0.tar.gz''
-37): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/R.utils_2.12.0.tar.gz''
-38): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/future.apply_1.9.0.tar.gz''
-39): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/IRanges_2.28.0.tar.gz''
-40): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/rhdf5_2.38.1.tar.gz''
-41): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/DelayedArray_0.20.0.tar.gz''
-42): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/GenomeInfoDb_1.30.1.tar.gz''
-43): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/XVector_0.34.0.tar.gz''
-44): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/CGHcall_2.56.0.tar.gz''
-45): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/BiocParallel_1.28.3.tar.gz''
-46): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/Biostrings_2.62.0.tar.gz''
-47): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/GenomicRanges_1.46.1.tar.gz''
-48): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/SummarizedExperiment_1.24.0.tar.gz''
-49): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/Rsamtools_2.10.0.tar.gz''
-50): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/InteractionSet_1.22.0.tar.gz''
-51): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/QDNAseq_1.30.0.tar.gz''
-52): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/HiCcompare_1.16.0.tar.gz''
-
-The downloaded source packages are in
-	‘/tmp/Rtmpi50vdq/downloaded_packages’
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 7 / 14: lubridate
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'http://cran.us.r-project.org/src/contrib/lubridate_1.8.0.tar.gz'
-Content type 'application/x-gzip' length 475704 bytes (464 KB)
-==================================================
-downloaded 464 KB
-
-foundpkgs: lubridate, /tmp/RtmpUnrAH3/downloaded_packages/lubridate_1.8.0.tar.gz
-files: /tmp/RtmpUnrAH3/downloaded_packages/lubridate_1.8.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpUnrAH3/downloaded_packages/lubridate_1.8.0.tar.gz''
-
-The downloaded source packages are in
-	‘/tmp/RtmpUnrAH3/downloaded_packages’
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 8 / 14: parallel
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package ‘parallel’ is a base package, and should not be updated
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 9 / 14: reshape2
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependency ‘plyr’
-
-trying URL 'http://cran.us.r-project.org/src/contrib/plyr_1.8.7.tar.gz'
-Content type 'application/x-gzip' length 401481 bytes (392 KB)
-==================================================
-downloaded 392 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/reshape2_1.4.4.tar.gz'
-Content type 'application/x-gzip' length 37307 bytes (36 KB)
-==================================================
-downloaded 36 KB
-
-foundpkgs: plyr, reshape2, /tmp/RtmpeaUoLe/downloaded_packages/plyr_1.8.7.tar.gz, /tmp/RtmpeaUoLe/downloaded_packages/reshape2_1.4.4.tar.gz
-files: /tmp/RtmpeaUoLe/downloaded_packages/plyr_1.8.7.tar.gz, 
-	/tmp/RtmpeaUoLe/downloaded_packages/reshape2_1.4.4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeaUoLe/downloaded_packages/plyr_1.8.7.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeaUoLe/downloaded_packages/reshape2_1.4.4.tar.gz''
-
-The downloaded source packages are in
-	‘/tmp/RtmpeaUoLe/downloaded_packages’
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 10 / 14: binb
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies ‘sass’, ‘base64enc’, ‘bslib’, ‘htmltools’, ‘jquerylib’, ‘tinytex’, ‘rmarkdown’
-
-trying URL 'http://cran.us.r-project.org/src/contrib/sass_0.4.1.tar.gz'
-Content type 'application/x-gzip' length 3022870 bytes (2.9 MB)
-==================================================
-downloaded 2.9 MB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/base64enc_0.1-3.tar.gz'
-Content type 'application/x-gzip' length 7833 bytes
-==================================================
-downloaded 7833 bytes
-
-trying URL 'http://cran.us.r-project.org/src/contrib/bslib_0.3.1.tar.gz'
-Content type 'application/x-gzip' length 4908277 bytes (4.7 MB)
-==================================================
-downloaded 4.7 MB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/htmltools_0.5.2.tar.gz'
-Content type 'application/x-gzip' length 124510 bytes (121 KB)
-==================================================
-downloaded 121 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/jquerylib_0.1.4.tar.gz'
-Content type 'application/x-gzip' length 520207 bytes (508 KB)
-==================================================
-downloaded 508 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/tinytex_0.40.tar.gz'
-Content type 'application/x-gzip' length 32846 bytes (32 KB)
-==================================================
-downloaded 32 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/rmarkdown_2.14.tar.gz'
-Content type 'application/x-gzip' length 3241807 bytes (3.1 MB)
-==================================================
-downloaded 3.1 MB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/binb_0.0.6.tar.gz'
-Content type 'application/x-gzip' length 2999419 bytes (2.9 MB)
-==================================================
-downloaded 2.9 MB
-
-foundpkgs: sass, base64enc, bslib, htmltools, jquerylib, tinytex, rmarkdown, binb, /tmp/Rtmp8GVRgn/downloaded_packages/sass_0.4.1.tar.gz, /tmp/Rtmp8GVRgn/downloaded_packages/base64enc_0.1-3.tar.gz, /tmp/Rtmp8GVRgn/downloaded_packages/bslib_0.3.1.tar.gz, /tmp/Rtmp8GVRgn/downloaded_packages/htmltools_0.5.2.tar.gz, /tmp/Rtmp8GVRgn/downloaded_packages/jquerylib_0.1.4.tar.gz, /tmp/Rtmp8GVRgn/downloaded_packages/tinytex_0.40.tar.gz, /tmp/Rtmp8GVRgn/downloaded_packages/rmarkdown_2.14.tar.gz, /tmp/Rtmp8GVRgn/downloaded_packages/binb_0.0.6.tar.gz
-files: /tmp/Rtmp8GVRgn/downloaded_packages/sass_0.4.1.tar.gz, 
-	/tmp/Rtmp8GVRgn/downloaded_packages/base64enc_0.1-3.tar.gz, 
-	/tmp/Rtmp8GVRgn/downloaded_packages/bslib_0.3.1.tar.gz, 
-	/tmp/Rtmp8GVRgn/downloaded_packages/htmltools_0.5.2.tar.gz, 
-	/tmp/Rtmp8GVRgn/downloaded_packages/jquerylib_0.1.4.tar.gz, 
-	/tmp/Rtmp8GVRgn/downloaded_packages/tinytex_0.40.tar.gz, 
-	/tmp/Rtmp8GVRgn/downloaded_packages/rmarkdown_2.14.tar.gz, 
-	/tmp/Rtmp8GVRgn/downloaded_packages/binb_0.0.6.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/base64enc_0.1-3.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/tinytex_0.40.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/htmltools_0.5.2.tar.gz''
-4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/sass_0.4.1.tar.gz''
-5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/jquerylib_0.1.4.tar.gz''
-6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/bslib_0.3.1.tar.gz''
-7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/rmarkdown_2.14.tar.gz''
-8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/binb_0.0.6.tar.gz''
-
-The downloaded source packages are in
-	‘/tmp/Rtmp8GVRgn/downloaded_packages’
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 11 / 14: linl
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'http://cran.us.r-project.org/src/contrib/linl_0.0.4.tar.gz'
-Content type 'application/x-gzip' length 76937 bytes (75 KB)
-==================================================
-downloaded 75 KB
-
-foundpkgs: linl, /tmp/RtmpWd1rP5/downloaded_packages/linl_0.0.4.tar.gz
-files: /tmp/RtmpWd1rP5/downloaded_packages/linl_0.0.4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpWd1rP5/downloaded_packages/linl_0.0.4.tar.gz''
-
-The downloaded source packages are in
-	‘/tmp/RtmpWd1rP5/downloaded_packages’
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 12 / 14: pinp
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'http://cran.us.r-project.org/src/contrib/pinp_0.0.10.tar.gz'
-Content type 'application/x-gzip' length 214270 bytes (209 KB)
-==================================================
-downloaded 209 KB
-
-foundpkgs: pinp, /tmp/RtmpH1rdED/downloaded_packages/pinp_0.0.10.tar.gz
-files: /tmp/RtmpH1rdED/downloaded_packages/pinp_0.0.10.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpH1rdED/downloaded_packages/pinp_0.0.10.tar.gz''
-
-The downloaded source packages are in
-	‘/tmp/RtmpH1rdED/downloaded_packages’
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 13 / 14: tint
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'http://cran.us.r-project.org/src/contrib/tint_0.1.3.tar.gz'
-Content type 'application/x-gzip' length 1937029 bytes (1.8 MB)
-==================================================
-downloaded 1.8 MB
-
-foundpkgs: tint, /tmp/RtmpebubFb/downloaded_packages/tint_0.1.3.tar.gz
-files: /tmp/RtmpebubFb/downloaded_packages/tint_0.1.3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpebubFb/downloaded_packages/tint_0.1.3.tar.gz''
-
-The downloaded source packages are in
-	‘/tmp/RtmpebubFb/downloaded_packages’
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 14 / 14: pdftools
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependency ‘qpdf’
-
-trying URL 'http://cran.us.r-project.org/src/contrib/qpdf_1.2.0.tar.gz'
-Content type 'application/x-gzip' length 321641 bytes (314 KB)
-==================================================
-downloaded 314 KB
-
-trying URL 'http://cran.us.r-project.org/src/contrib/pdftools_3.2.1.tar.gz'
-Content type 'application/x-gzip' length 936059 bytes (914 KB)
-==================================================
-downloaded 914 KB
-
-foundpkgs: qpdf, pdftools, /tmp/RtmpvWe7AD/downloaded_packages/qpdf_1.2.0.tar.gz, /tmp/RtmpvWe7AD/downloaded_packages/pdftools_3.2.1.tar.gz
-files: /tmp/RtmpvWe7AD/downloaded_packages/qpdf_1.2.0.tar.gz, 
-	/tmp/RtmpvWe7AD/downloaded_packages/pdftools_3.2.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpvWe7AD/downloaded_packages/qpdf_1.2.0.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpvWe7AD/downloaded_packages/pdftools_3.2.1.tar.gz''
-
-The downloaded source packages are in
-	‘/tmp/RtmpvWe7AD/downloaded_packages’
-
-
-
-
-================
-
-R PACKAGES INSTALLED
-
-================
-
-
-
-
-SEE ALSO THE installed_r_packages.csv TABLE IN THE ROOT OF THE CONTAINER
-
-
-now dyn.load("/usr/lib/R/library/tools/libs/tools.so") ...
-                                  Package                       LibPath
-askpass                           askpass /usr/local/lib/R/site-library
-base64enc                       base64enc /usr/local/lib/R/site-library
-BH                                     BH /usr/local/lib/R/site-library
-binb                                 binb /usr/local/lib/R/site-library
-Biobase                           Biobase /usr/local/lib/R/site-library
-BiocGenerics                 BiocGenerics /usr/local/lib/R/site-library
-BiocManager                   BiocManager /usr/local/lib/R/site-library
-BiocParallel                 BiocParallel /usr/local/lib/R/site-library
-BiocVersion                   BiocVersion /usr/local/lib/R/site-library
-Biostrings                     Biostrings /usr/local/lib/R/site-library
-bitops                             bitops /usr/local/lib/R/site-library
-brew                                 brew /usr/local/lib/R/site-library
-brio                                 brio /usr/local/lib/R/site-library
-bslib                               bslib /usr/local/lib/R/site-library
-cachem                             cachem /usr/local/lib/R/site-library
-Cairo                               Cairo /usr/local/lib/R/site-library
-callr                               callr /usr/local/lib/R/site-library
-CGHbase                           CGHbase /usr/local/lib/R/site-library
-CGHcall                           CGHcall /usr/local/lib/R/site-library
-cli                                   cli /usr/local/lib/R/site-library
-clipr                               clipr /usr/local/lib/R/site-library
-colorspace                     colorspace /usr/local/lib/R/site-library
-commonmark                     commonmark /usr/local/lib/R/site-library
-cpp11                               cpp11 /usr/local/lib/R/site-library
-crayon                             crayon /usr/local/lib/R/site-library
-credentials                   credentials /usr/local/lib/R/site-library
-curl                                 curl /usr/local/lib/R/site-library
-data.table                     data.table /usr/local/lib/R/site-library
-DelayedArray                 DelayedArray /usr/local/lib/R/site-library
-desc                                 desc /usr/local/lib/R/site-library
-devtools                         devtools /usr/local/lib/R/site-library
-diffobj                           diffobj /usr/local/lib/R/site-library
-digest                             digest /usr/local/lib/R/site-library
-DNAcopy                           DNAcopy /usr/local/lib/R/site-library
-docopt                             docopt /usr/local/lib/R/site-library
-dplyr                               dplyr /usr/local/lib/R/site-library
-ellipsis                         ellipsis /usr/local/lib/R/site-library
-evaluate                         evaluate /usr/local/lib/R/site-library
-fansi                               fansi /usr/local/lib/R/site-library
-farver                             farver /usr/local/lib/R/site-library
-fastmap                           fastmap /usr/local/lib/R/site-library
-formatR                           formatR /usr/local/lib/R/site-library
-fs                                     fs /usr/local/lib/R/site-library
-futile.logger               futile.logger /usr/local/lib/R/site-library
-futile.options             futile.options /usr/local/lib/R/site-library
-future                             future /usr/local/lib/R/site-library
-future.apply                 future.apply /usr/local/lib/R/site-library
-generics                         generics /usr/local/lib/R/site-library
-GenomeInfoDb                 GenomeInfoDb /usr/local/lib/R/site-library
-GenomeInfoDbData         GenomeInfoDbData /usr/local/lib/R/site-library
-GenomicRanges               GenomicRanges /usr/local/lib/R/site-library
-gert                                 gert /usr/local/lib/R/site-library
-ggplot2                           ggplot2 /usr/local/lib/R/site-library
-gh                                     gh /usr/local/lib/R/site-library
-gitcreds                         gitcreds /usr/local/lib/R/site-library
-globals                           globals /usr/local/lib/R/site-library
-glue                                 glue /usr/local/lib/R/site-library
-gridExtra                       gridExtra /usr/local/lib/R/site-library
-gtable                             gtable /usr/local/lib/R/site-library
-gtools                             gtools /usr/local/lib/R/site-library
-HiCcompare                     HiCcompare /usr/local/lib/R/site-library
-highr                               highr /usr/local/lib/R/site-library
-htmltools                       htmltools /usr/local/lib/R/site-library
-httr                                 httr /usr/local/lib/R/site-library
-impute                             impute /usr/local/lib/R/site-library
-ini                                   ini /usr/local/lib/R/site-library
-InteractionSet             InteractionSet /usr/local/lib/R/site-library
-IRanges                           IRanges /usr/local/lib/R/site-library
-isoband                           isoband /usr/local/lib/R/site-library
-jquerylib                       jquerylib /usr/local/lib/R/site-library
-jsonlite                         jsonlite /usr/local/lib/R/site-library
-knitr                               knitr /usr/local/lib/R/site-library
-labeling                         labeling /usr/local/lib/R/site-library
-lambda.r                         lambda.r /usr/local/lib/R/site-library
-lifecycle                       lifecycle /usr/local/lib/R/site-library
-limma                               limma /usr/local/lib/R/site-library
-linl                                 linl /usr/local/lib/R/site-library
-listenv                           listenv /usr/local/lib/R/site-library
-lubridate                       lubridate /usr/local/lib/R/site-library
-magrittr                         magrittr /usr/local/lib/R/site-library
-marray                             marray /usr/local/lib/R/site-library
-MatrixGenerics             MatrixGenerics /usr/local/lib/R/site-library
-matrixStats                   matrixStats /usr/local/lib/R/site-library
-memoise                           memoise /usr/local/lib/R/site-library
-mime                                 mime /usr/local/lib/R/site-library
-munsell                           munsell /usr/local/lib/R/site-library
-openssl                           openssl /usr/local/lib/R/site-library
-parallelly                     parallelly /usr/local/lib/R/site-library
-pdftools                         pdftools /usr/local/lib/R/site-library
-pheatmap                         pheatmap /usr/local/lib/R/site-library
-pillar                             pillar /usr/local/lib/R/site-library
-pinp                                 pinp /usr/local/lib/R/site-library
-pkgbuild                         pkgbuild /usr/local/lib/R/site-library
-pkgconfig                       pkgconfig /usr/local/lib/R/site-library
-pkgload                           pkgload /usr/local/lib/R/site-library
-plyr                                 plyr /usr/local/lib/R/site-library
-praise                             praise /usr/local/lib/R/site-library
-prettyunits                   prettyunits /usr/local/lib/R/site-library
-processx                         processx /usr/local/lib/R/site-library
-ps                                     ps /usr/local/lib/R/site-library
-purrr                               purrr /usr/local/lib/R/site-library
-QDNAseq                           QDNAseq /usr/local/lib/R/site-library
-qpdf                                 qpdf /usr/local/lib/R/site-library
-R.methodsS3                   R.methodsS3 /usr/local/lib/R/site-library
-R.oo                                 R.oo /usr/local/lib/R/site-library
-R.utils                           R.utils /usr/local/lib/R/site-library
-R6                                     R6 /usr/local/lib/R/site-library
-rappdirs                         rappdirs /usr/local/lib/R/site-library
-rcmdcheck                       rcmdcheck /usr/local/lib/R/site-library
-RColorBrewer                 RColorBrewer /usr/local/lib/R/site-library
-Rcpp                                 Rcpp /usr/local/lib/R/site-library
-RCurl                               RCurl /usr/local/lib/R/site-library
-rematch2                         rematch2 /usr/local/lib/R/site-library
-remotes                           remotes /usr/local/lib/R/site-library
-reshape2                         reshape2 /usr/local/lib/R/site-library
-rhdf5                               rhdf5 /usr/local/lib/R/site-library
-rhdf5filters                 rhdf5filters /usr/local/lib/R/site-library
-Rhdf5lib                         Rhdf5lib /usr/local/lib/R/site-library
-Rhtslib                           Rhtslib /usr/local/lib/R/site-library
-rlang                               rlang /usr/local/lib/R/site-library
-rmarkdown                       rmarkdown /usr/local/lib/R/site-library
-roxygen2                         roxygen2 /usr/local/lib/R/site-library
-rprojroot                       rprojroot /usr/local/lib/R/site-library
-Rsamtools                       Rsamtools /usr/local/lib/R/site-library
-rstudioapi                     rstudioapi /usr/local/lib/R/site-library
-rversions                       rversions /usr/local/lib/R/site-library
-S4Vectors                       S4Vectors /usr/local/lib/R/site-library
-sass                                 sass /usr/local/lib/R/site-library
-scales                             scales /usr/local/lib/R/site-library
-sessioninfo                   sessioninfo /usr/local/lib/R/site-library
-snow                                 snow /usr/local/lib/R/site-library
-snowfall                         snowfall /usr/local/lib/R/site-library
-stringi                           stringi /usr/local/lib/R/site-library
-stringr                           stringr /usr/local/lib/R/site-library
-SummarizedExperiment SummarizedExperiment /usr/local/lib/R/site-library
-sys                                   sys /usr/local/lib/R/site-library
-testthat                         testthat /usr/local/lib/R/site-library
-tibble                             tibble /usr/local/lib/R/site-library
-tidyselect                     tidyselect /usr/local/lib/R/site-library
-tint                                 tint /usr/local/lib/R/site-library
-tinytex                           tinytex /usr/local/lib/R/site-library
-usethis                           usethis /usr/local/lib/R/site-library
-utf8                                 utf8 /usr/local/lib/R/site-library
-vctrs                               vctrs /usr/local/lib/R/site-library
-viridisLite                   viridisLite /usr/local/lib/R/site-library
-waldo                               waldo /usr/local/lib/R/site-library
-whisker                           whisker /usr/local/lib/R/site-library
-withr                               withr /usr/local/lib/R/site-library
-xfun                                 xfun /usr/local/lib/R/site-library
-xml2                                 xml2 /usr/local/lib/R/site-library
-xopen                               xopen /usr/local/lib/R/site-library
-XVector                           XVector /usr/local/lib/R/site-library
-yaml                                 yaml /usr/local/lib/R/site-library
-zip                                   zip /usr/local/lib/R/site-library
-zlibbioc                         zlibbioc /usr/local/lib/R/site-library
-littler                           littler       /usr/lib/R/site-library
-base                                 base            /usr/lib/R/library
-boot                                 boot            /usr/lib/R/library
-class                               class            /usr/lib/R/library
-cluster                           cluster            /usr/lib/R/library
-codetools                       codetools            /usr/lib/R/library
-compiler                         compiler            /usr/lib/R/library
-datasets                         datasets            /usr/lib/R/library
-foreign                           foreign            /usr/lib/R/library
-graphics                         graphics            /usr/lib/R/library
-grDevices                       grDevices            /usr/lib/R/library
-grid                                 grid            /usr/lib/R/library
-KernSmooth                     KernSmooth            /usr/lib/R/library
-lattice                           lattice            /usr/lib/R/library
-MASS                                 MASS            /usr/lib/R/library
-Matrix                             Matrix            /usr/lib/R/library
-methods                           methods            /usr/lib/R/library
-mgcv                                 mgcv            /usr/lib/R/library
-nlme                                 nlme            /usr/lib/R/library
-nnet                                 nnet            /usr/lib/R/library
-parallel                         parallel            /usr/lib/R/library
-rpart                               rpart            /usr/lib/R/library
-spatial                           spatial            /usr/lib/R/library
-splines                           splines            /usr/lib/R/library
-stats                               stats            /usr/lib/R/library
-stats4                             stats4            /usr/lib/R/library
-survival                         survival            /usr/lib/R/library
-tcltk                               tcltk            /usr/lib/R/library
-tools                               tools            /usr/lib/R/library
-utils                               utils            /usr/lib/R/library
-                      Version    Priority
-askpass                   1.1        <NA>
-base64enc               0.1-3        <NA>
-BH                   1.78.0-0        <NA>
-binb                    0.0.6        <NA>
-Biobase                2.54.0        <NA>
-BiocGenerics           0.40.0        <NA>
-BiocManager           1.30.18        <NA>
-BiocParallel           1.28.3        <NA>
-BiocVersion            3.14.0        <NA>
-Biostrings             2.62.0        <NA>
-bitops                  1.0-7        <NA>
-brew                    1.0-7        <NA>
-brio                    1.1.3        <NA>
-bslib                   0.3.1        <NA>
-cachem                  1.0.6        <NA>
-Cairo                  1.5-15        <NA>
-callr                   3.7.0        <NA>
-CGHbase                1.54.0        <NA>
-CGHcall                2.56.0        <NA>
-cli                     3.3.0        <NA>
-clipr                   0.8.0        <NA>
-colorspace              2.0-3        <NA>
-commonmark              1.8.0        <NA>
-cpp11                   0.4.2        <NA>
-crayon                  1.5.1        <NA>
-credentials             1.3.2        <NA>
-curl                    4.3.2        <NA>
-data.table             1.14.2        <NA>
-DelayedArray           0.20.0        <NA>
-desc                    1.4.1        <NA>
-devtools                2.4.3        <NA>
-diffobj                 0.3.5        <NA>
-digest                 0.6.29        <NA>
-DNAcopy                1.68.0        <NA>
-docopt                  0.7.1        <NA>
-dplyr                   1.0.9        <NA>
-ellipsis                0.3.2        <NA>
-evaluate                 0.15        <NA>
-fansi                   1.0.3        <NA>
-farver                  2.1.0        <NA>
-fastmap                 1.1.0        <NA>
-formatR                  1.12        <NA>
-fs                      1.5.2        <NA>
-futile.logger           1.4.3        <NA>
-futile.options          1.0.1        <NA>
-future                 1.26.1        <NA>
-future.apply            1.9.0        <NA>
-generics                0.1.2        <NA>
-GenomeInfoDb           1.30.1        <NA>
-GenomeInfoDbData        1.2.7        <NA>
-GenomicRanges          1.46.1        <NA>
-gert                    1.6.0        <NA>
-ggplot2                 3.3.3        <NA>
-gh                      1.3.0        <NA>
-gitcreds                0.1.1        <NA>
-globals                0.15.1        <NA>
-glue                    1.6.2        <NA>
-gridExtra                 2.3        <NA>
-gtable                  0.3.0        <NA>
-gtools                3.9.2.2        <NA>
-HiCcompare             1.16.0        <NA>
-highr                     0.9        <NA>
-htmltools               0.5.2        <NA>
-httr                    1.4.3        <NA>
-impute                 1.68.0        <NA>
-ini                     0.3.1        <NA>
-InteractionSet         1.22.0        <NA>
-IRanges                2.28.0        <NA>
-isoband                 0.2.5        <NA>
-jquerylib               0.1.4        <NA>
-jsonlite                1.8.0        <NA>
-knitr                    1.39        <NA>
-labeling                0.4.2        <NA>
-lambda.r                1.2.4        <NA>
-lifecycle               1.0.1        <NA>
-limma                  3.50.3        <NA>
-linl                    0.0.4        <NA>
-listenv                 0.8.0        <NA>
-lubridate               1.8.0        <NA>
-magrittr                2.0.3        <NA>
-marray                 1.72.0        <NA>
-MatrixGenerics          1.6.0        <NA>
-matrixStats            0.62.0        <NA>
-memoise                 2.0.1        <NA>
-mime                     0.12        <NA>
-munsell                 0.5.0        <NA>
-openssl                 2.0.2        <NA>
-parallelly             1.32.0        <NA>
-pdftools                3.2.1        <NA>
-pheatmap               1.0.12        <NA>
-pillar                  1.7.0        <NA>
-pinp                   0.0.10        <NA>
-pkgbuild                1.3.1        <NA>
-pkgconfig               2.0.3        <NA>
-pkgload                 1.3.0        <NA>
-plyr                    1.8.7        <NA>
-praise                  1.0.0        <NA>
-prettyunits             1.1.1        <NA>
-processx                3.6.1        <NA>
-ps                      1.7.1        <NA>
-purrr                   0.3.4        <NA>
-QDNAseq                1.30.0        <NA>
-qpdf                    1.2.0        <NA>
-R.methodsS3             1.8.2        <NA>
-R.oo                   1.25.0        <NA>
-R.utils                2.12.0        <NA>
-R6                      2.5.1        <NA>
-rappdirs                0.3.3        <NA>
-rcmdcheck               1.4.0        <NA>
-RColorBrewer            1.1-3        <NA>
-Rcpp                  1.0.8.3        <NA>
-RCurl                1.98-1.7        <NA>
-rematch2                2.1.2        <NA>
-remotes                 2.4.2        <NA>
-reshape2                1.4.4        <NA>
-rhdf5                  2.38.1        <NA>
-rhdf5filters            1.6.0        <NA>
-Rhdf5lib               1.16.0        <NA>
-Rhtslib                1.26.0        <NA>
-rlang                   1.0.3        <NA>
-rmarkdown                2.14        <NA>
-roxygen2                7.2.0        <NA>
-rprojroot               2.0.3        <NA>
-Rsamtools              2.10.0        <NA>
-rstudioapi               0.13        <NA>
-rversions               2.1.1        <NA>
-S4Vectors              0.32.4        <NA>
-sass                    0.4.1        <NA>
-scales                  1.2.0        <NA>
-sessioninfo             1.2.2        <NA>
-snow                    0.4-4        <NA>
-snowfall             1.84-6.1        <NA>
-stringi                 1.7.6        <NA>
-stringr                 1.4.0        <NA>
-SummarizedExperiment   1.24.0        <NA>
-sys                       3.4        <NA>
-testthat                3.1.4        <NA>
-tibble                  3.1.7        <NA>
-tidyselect              1.1.2        <NA>
-tint                    0.1.3        <NA>
-tinytex                  0.40        <NA>
-usethis                 2.1.6        <NA>
-utf8                    1.2.2        <NA>
-vctrs                   0.4.1        <NA>
-viridisLite             0.4.0        <NA>
-waldo                   0.4.0        <NA>
-whisker                   0.4        <NA>
-withr                   2.5.0        <NA>
-xfun                     0.31        <NA>
-xml2                    1.3.3        <NA>
-xopen                   1.0.0        <NA>
-XVector                0.34.0        <NA>
-yaml                    2.3.5        <NA>
-zip                     2.2.0        <NA>
-zlibbioc               1.40.0        <NA>
-littler                0.3.15        <NA>
-base                    4.1.2        base
-boot                   1.3-28 recommended
-class                  7.3-20 recommended
-cluster                 2.1.2 recommended
-codetools              0.2-18 recommended
-compiler                4.1.2        base
-datasets                4.1.2        base
-foreign                0.8-82 recommended
-graphics                4.1.2        base
-grDevices               4.1.2        base
-grid                    4.1.2        base
-KernSmooth            2.23-20 recommended
-lattice               0.20-45 recommended
-MASS                   7.3-55 recommended
-Matrix                  1.4-0 recommended
-methods                 4.1.2        base
-mgcv                   1.8-38 recommended
-nlme                  3.1-155 recommended
-nnet                   7.3-17 recommended
-parallel                4.1.2        base
-rpart                  4.1.16 recommended
-spatial                7.3-15 recommended
-splines                 4.1.2        base
-stats                   4.1.2        base
-stats4                  4.1.2        base
-survival               3.2-13 recommended
-tcltk                   4.1.2        base
-tools                   4.1.2        base
-utils                   4.1.2        base
-
-
-
-
-================
-
-R PACKAGES NOT INSTALLED
-
-================
-
-
-
-
-ALL THE PACKAGES HAVE BEEN INSTALLED
-
-
-
-
-
-
-================
-
-apt-get autoremove
-
-================
-
-
-
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 86 not upgraded.
-
-
-
-
-================
-
-apt-get clean
-
-================
-
-
-
-
-
-
-
-
-================
-
-rm
-
-================
-
-
-
-
-
-
-
-
-================
-
-LINUX PACKAGES INSTALLED
-
-================
-
-
-
-
-procps:
-  Installed: 2:3.3.16-1ubuntu2.3
-  Candidate: 2:3.3.16-1ubuntu2.3
-  Version table:
- *** 2:3.3.16-1ubuntu2.3 100
-        100 /var/lib/dpkg/status
-libfontconfig1-dev:
-  Installed: 2.13.1-2ubuntu3
-  Candidate: 2.13.1-2ubuntu3
-  Version table:
- *** 2.13.1-2ubuntu3 100
-        100 /var/lib/dpkg/status
-ghostscript:
-  Installed: 9.50~dfsg-5ubuntu4.5
-  Candidate: 9.50~dfsg-5ubuntu4.5
-  Version table:
- *** 9.50~dfsg-5ubuntu4.5 100
-        100 /var/lib/dpkg/status
-lmodern:
-  Installed: 2.004.5-6
-  Candidate: 2.004.5-6
-  Version table:
- *** 2.004.5-6 100
-        100 /var/lib/dpkg/status
-pandoc:
-  Installed: 2.5-3build2
-  Candidate: 2.5-3build2
-  Version table:
- *** 2.5-3build2 100
-        100 /var/lib/dpkg/status
-pandoc-citeproc:
-  Installed: 0.15.0.1-1build4
-  Candidate: 0.15.0.1-1build4
-  Version table:
- *** 0.15.0.1-1build4 100
-        100 /var/lib/dpkg/status
-qpdf:
-  Installed: 9.1.1-1ubuntu0.1
-  Candidate: 9.1.1-1ubuntu0.1
-  Version table:
- *** 9.1.1-1ubuntu0.1 100
-        100 /var/lib/dpkg/status
-texinfo:
-  Installed: 6.7.0.dfsg.2-5
-  Candidate: 6.7.0.dfsg.2-5
-  Version table:
- *** 6.7.0.dfsg.2-5 100
-        100 /var/lib/dpkg/status
-texlive-fonts-extra:
-  Installed: 2019.202000218-1
-  Candidate: 2019.202000218-1
-  Version table:
- *** 2019.202000218-1 100
-        100 /var/lib/dpkg/status
-texlive-fonts-recommended:
-  Installed: 2019.20200218-1
-  Candidate: 2019.20200218-1
-  Version table:
- *** 2019.20200218-1 100
-        100 /var/lib/dpkg/status
-texlive-latex-extra:
-  Installed: 2019.202000218-1
-  Candidate: 2019.202000218-1
-  Version table:
- *** 2019.202000218-1 100
-        100 /var/lib/dpkg/status
-texlive-latex-recommended:
-  Installed: 2019.20200218-1
-  Candidate: 2019.20200218-1
-  Version table:
- *** 2019.20200218-1 100
-        100 /var/lib/dpkg/status
-texlive-luatex:
-  Installed: 2019.20200218-1
-  Candidate: 2019.20200218-1
-  Version table:
- *** 2019.20200218-1 100
-        100 /var/lib/dpkg/status
-texlive-plain-generic:
-  Installed: 2019.202000218-1
-  Candidate: 2019.202000218-1
-  Version table:
- *** 2019.202000218-1 100
-        100 /var/lib/dpkg/status
-texlive-science:
-  Installed: 2019.202000218-1
-  Candidate: 2019.202000218-1
-  Version table:
- *** 2019.202000218-1 100
-        100 /var/lib/dpkg/status
-texlive-xetex:
-  Installed: 2019.20200218-1
-  Candidate: 2019.20200218-1
-  Version table:
- *** 2019.20200218-1 100
-        100 /var/lib/dpkg/status
-libpoppler-cpp-dev:
-  Installed: 0.86.1-0ubuntu1
-  Candidate: 0.86.1-0ubuntu1
-  Version table:
- *** 0.86.1-0ubuntu1 100
-        100 /var/lib/dpkg/status
-build-essential:
-  Installed: 12.8ubuntu1.1
-  Candidate: 12.8ubuntu1.1
-  Version table:
- *** 12.8ubuntu1.1 100
-        100 /var/lib/dpkg/status
-libcurl4-gnutls-dev:
-  Installed: 7.68.0-1ubuntu2.12
-  Candidate: 7.68.0-1ubuntu2.12
-  Version table:
- *** 7.68.0-1ubuntu2.12 100
-        100 /var/lib/dpkg/status
-libxml2-dev:
-  Installed: 2.9.10+dfsg-5ubuntu0.20.04.3
-  Candidate: 2.9.10+dfsg-5ubuntu0.20.04.3
-  Version table:
- *** 2.9.10+dfsg-5ubuntu0.20.04.3 100
-        100 /var/lib/dpkg/status
-libssl-dev:
-  Installed: 1.1.1f-1ubuntu2.15
-  Candidate: 1.1.1f-1ubuntu2.15
-  Version table:
- *** 1.1.1f-1ubuntu2.15 100
-        100 /var/lib/dpkg/status
-libgit2-dev:
-  Installed: 0.28.4+dfsg.1-2
-  Candidate: 0.28.4+dfsg.1-2
-  Version table:
- *** 0.28.4+dfsg.1-2 100
-        100 /var/lib/dpkg/status
-libcairo2-dev:
-  Installed: 1.16.0-4ubuntu1
-  Candidate: 1.16.0-4ubuntu1
-  Version table:
- *** 1.16.0-4ubuntu1 100
-        100 /var/lib/dpkg/status
-libxt-dev:
-  Installed: 1:1.1.5-1
-  Candidate: 1:1.1.5-1
-  Version table:
- *** 1:1.1.5-1 100
-        100 /var/lib/dpkg/status
diff --git a/installed_r_packages.csv b/installed_r_packages.csv
deleted file mode 100644
index bea978d3c9bf405ff1caf0ab989aca629be96368..0000000000000000000000000000000000000000
--- a/installed_r_packages.csv
+++ /dev/null
@@ -1,186 +0,0 @@
-Package;LibPath;Version;Priority;Depends;Imports;LinkingTo;Suggests;Enhances;License;License_is_FOSS;License_restricts_use;OS_type;MD5sum;NeedsCompilation;Built
-askpass;/usr/local/lib/R/site-library;1.1;NA;NA;sys (>= 2.1);NA;testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-base64enc;/usr/local/lib/R/site-library;0.1-3;NA;R (>= 2.9.0);NA;NA;NA;png;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
-BH;/usr/local/lib/R/site-library;1.78.0-0;NA;NA;NA;NA;NA;NA;BSL-1.0;NA;NA;NA;NA;no;4.1.2
-binb;/usr/local/lib/R/site-library;0.0.6;NA;NA;rmarkdown, knitr;NA;NA;NA;GPL (>= 2);NA;NA;NA;NA;no;4.1.2
-Biobase;/usr/local/lib/R/site-library;2.54.0;NA;R (>= 2.10), BiocGenerics (>= 0.27.1), utils;methods;NA;tools, tkWidgets, ALL, RUnit, golubEsets;NA;Artistic-2.0;NA;NA;NA;NA;yes;4.1.2
-BiocGenerics;/usr/local/lib/R/site-library;0.40.0;NA;R (>= 4.0.0), methods, utils, graphics, stats;methods, utils, graphics, stats;NA;Biobase, S4Vectors, IRanges, GenomicRanges, DelayedArray,Biostrings, Rsamtools, AnnotationDbi, affy, affyPLM, DESeq2,flowClust, MSnbase, annotate, RUnit;NA;Artistic-2.0;NA;NA;NA;NA;no;4.1.2
-BiocManager;/usr/local/lib/R/site-library;1.30.18;NA;NA;utils;NA;BiocVersion, remotes, rmarkdown, testthat, withr, curl, knitr;NA;Artistic-2.0;NA;NA;NA;NA;no;4.1.2
-BiocParallel;/usr/local/lib/R/site-library;1.28.3;NA;methods, R (>= 3.5.0);stats, utils, futile.logger, parallel, snow;BH;BiocGenerics, tools, foreach, BatchJobs, BBmisc, doParallel,Rmpi, GenomicRanges, RNAseqData.HNRNPC.bam.chr14,TxDb.Hsapiens.UCSC.hg19.knownGene, VariantAnnotation,Rsamtools, GenomicAlignments, ShortRead, codetools, RUnit,BiocStyle, knitr, batchtools, data.table;NA;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
-BiocVersion;/usr/local/lib/R/site-library;3.14.0;NA;R (>= 4.1.0);NA;NA;NA;NA;Artistic-2.0;NA;NA;NA;NA;no;4.1.2
-Biostrings;/usr/local/lib/R/site-library;2.62.0;NA;R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0), S4Vectors (>=0.27.12), IRanges (>= 2.23.9), XVector (>= 0.29.2),GenomeInfoDb;methods, utils, grDevices, graphics, stats, crayon;S4Vectors, IRanges, XVector;BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>=1.3.11), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),BSgenome.Hsapiens.UCSC.hg18, drosophila2probe, hgu95av2probe,hgu133aprobe, GenomicFeatures (>= 1.3.14), hgu95av2cdf, affy(>= 1.41.3), affydata (>= 1.11.5), RUnit;Rmpi;Artistic-2.0;NA;NA;NA;NA;yes;4.1.2
-bitops;/usr/local/lib/R/site-library;1.0-7;NA;NA;NA;NA;NA;NA;GPL (>= 2);NA;NA;NA;NA;yes;4.1.2
-brew;/usr/local/lib/R/site-library;1.0-7;NA;NA;NA;NA;testthat;NA;GPL-2;NA;NA;NA;NA;no;4.1.2
-brio;/usr/local/lib/R/site-library;1.1.3;NA;NA;NA;NA;covr, testthat (>= 2.1.0);NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-bslib;/usr/local/lib/R/site-library;0.3.1;NA;R (>= 2.10);grDevices, htmltools (>= 0.5.2), jsonlite, sass (>= 0.4.0),jquerylib (>= 0.1.3), rlang;NA;shiny (>= 1.6.0), rmarkdown (>= 2.7), thematic, knitr,testthat, withr, rappdirs, curl, magrittr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-cachem;/usr/local/lib/R/site-library;1.0.6;NA;NA;rlang, fastmap;NA;testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-Cairo;/usr/local/lib/R/site-library;1.5-15;NA;R (>= 2.4.0);grDevices, graphics;NA;png;FastRWeb;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
-callr;/usr/local/lib/R/site-library;3.7.0;NA;NA;processx (>= 3.5.0), R6, utils;NA;cli, covr, ps, rprojroot, spelling, testthat, withr (>=2.3.0);NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-CGHbase;/usr/local/lib/R/site-library;1.54.0;NA;R (>= 2.10), methods, Biobase (>= 2.5.5), marray;NA;NA;NA;NA;GPL;NA;NA;NA;NA;no;4.1.2
-CGHcall;/usr/local/lib/R/site-library;2.56.0;NA;R (>= 2.0.0), impute(>= 1.8.0), DNAcopy (>= 1.6.0), methods,Biobase, CGHbase (>= 1.15.1), snowfall;NA;NA;NA;NA;GPL (http://www.gnu.org/copyleft/gpl.html);NA;NA;NA;NA;no;4.1.2
-cli;/usr/local/lib/R/site-library;3.3.0;NA;R (>= 3.4);glue (>= 1.6.0), utils;NA;asciicast, callr, covr, digest, grDevices, htmltools,htmlwidgets, knitr, methods, mockery, processx, ps (>=1.3.4.9000), rlang, rmarkdown, rstudioapi, shiny, testthat,tibble, whoami, withr;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-clipr;/usr/local/lib/R/site-library;0.8.0;NA;NA;utils;NA;covr, knitr, rmarkdown, rstudioapi (>= 0.5), testthat (>=2.0.0);NA;GPL-3;NA;NA;NA;NA;no;4.1.2
-colorspace;/usr/local/lib/R/site-library;2.0-3;NA;R (>= 3.0.0), methods;graphics, grDevices, stats;NA;datasets, utils, KernSmooth, MASS, kernlab, mvtnorm, vcd,tcltk, shiny, shinyjs, ggplot2, dplyr, scales, grid, png, jpeg,knitr, rmarkdown, RColorBrewer, rcartocolor, scico, viridis,wesanderson;NA;BSD_3_clause + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-commonmark;/usr/local/lib/R/site-library;1.8.0;NA;NA;NA;NA;curl, testthat, xml2;NA;BSD_2_clause + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-cpp11;/usr/local/lib/R/site-library;0.4.2;NA;NA;NA;NA;bench, brio, callr, cli, covr, decor, desc, ggplot2, glue,knitr, lobstr, mockery, progress, rmarkdown, scales, Rcpp,testthat, tibble, utils, vctrs, withr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-crayon;/usr/local/lib/R/site-library;1.5.1;NA;NA;grDevices, methods, utils;NA;mockery, rstudioapi, testthat, withr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-credentials;/usr/local/lib/R/site-library;1.3.2;NA;NA;openssl (>= 1.3), sys (>= 2.1), curl, jsonlite, askpass;NA;testthat, knitr, rmarkdown;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-curl;/usr/local/lib/R/site-library;4.3.2;NA;R (>= 3.0.0);NA;NA;spelling, testthat (>= 1.0.0), knitr, jsonlite, rmarkdown,magrittr, httpuv (>= 1.4.4), webutils;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-data.table;/usr/local/lib/R/site-library;1.14.2;NA;R (>= 3.1.0);methods;NA;bit64 (>= 4.0.0), bit (>= 4.0.4), curl, R.utils, xts,nanotime, zoo (>= 1.8-1), yaml, knitr, rmarkdown;NA;MPL-2.0 | file LICENSE;NA;NA;NA;NA;yes;4.1.2
-DelayedArray;/usr/local/lib/R/site-library;0.20.0;NA;R (>= 4.0.0), methods, stats4, Matrix, BiocGenerics (>=0.37.0), MatrixGenerics (>= 1.1.3), S4Vectors (>= 0.27.2),IRanges (>= 2.17.3);stats;S4Vectors;BiocParallel, HDF5Array (>= 1.17.12), genefilter,SummarizedExperiment, airway, lobstr, DelayedMatrixStats,knitr, rmarkdown, BiocStyle, RUnit;NA;Artistic-2.0;NA;NA;NA;NA;yes;4.1.2
-desc;/usr/local/lib/R/site-library;1.4.1;NA;R (>= 3.4);cli, R6, rprojroot, utils;NA;callr, covr, gh, spelling, testthat, whoami, withr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-devtools;/usr/local/lib/R/site-library;2.4.3;NA;R (>= 3.0.2), usethis (>= 2.0.1);callr (>= 3.6.0), cli (>= 3.0.0), desc (>= 1.3.0), ellipsis(>= 0.3.1), fs (>= 1.5.0), httr (>= 1.4.2), lifecycle (>=1.0.0), memoise (>= 2.0.0), pkgbuild (>= 1.2.0), pkgload (>=1.2.1), rcmdcheck (>= 1.3.3), remotes (>= 2.3.0), rlang (>=0.4.10), roxygen2 (>= 7.1.1), rstudioapi (>= 0.13), rversions(>= 2.0.2), sessioninfo (>= 1.1.1), stats, testthat (>= 3.0.2),tools, utils, withr (>= 2.4.1);NA;BiocManager (>= 1.30.12), covr (>= 3.5.1), curl (>= 4.3),digest (>= 0.6.27), DT (>= 0.17), foghorn (>= 1.3.2), gh (>=1.2.1), gmailr (>= 1.0.0), knitr (>= 1.31), lintr (>= 2.0.1),MASS, mockery (>= 0.4.2), pingr (>= 2.0.1), pkgdown (>= 1.6.1),rhub (>= 1.1.1), rmarkdown (>= 2.7), spelling (>= 2.2);NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-diffobj;/usr/local/lib/R/site-library;0.3.5;NA;R (>= 3.1.0);crayon (>= 1.3.2), tools, methods, utils, stats;NA;knitr, rmarkdown;NA;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
-digest;/usr/local/lib/R/site-library;0.6.29;NA;R (>= 3.3.0);utils;NA;tinytest, simplermarkdown;NA;GPL (>= 2);NA;NA;NA;NA;yes;4.1.2
-DNAcopy;/usr/local/lib/R/site-library;1.68.0;NA;NA;NA;NA;NA;NA;GPL (>= 2);NA;NA;NA;NA;yes;4.1.2
-docopt;/usr/local/lib/R/site-library;0.7.1;NA;NA;methods;NA;testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-dplyr;/usr/local/lib/R/site-library;1.0.9;NA;R (>= 3.4.0);generics, glue (>= 1.3.2), lifecycle (>= 1.0.1), magrittr (>=1.5), methods, R6, rlang (>= 1.0.2), tibble (>= 2.1.3),tidyselect (>= 1.1.1), utils, vctrs (>= 0.4.1), pillar (>=1.5.1);NA;bench, broom, callr, covr, DBI, dbplyr (>= 1.4.3), ggplot2,knitr, Lahman, lobstr, microbenchmark, nycflights13, purrr,rmarkdown, RMySQL, RPostgreSQL, RSQLite, testthat (>= 3.1.1),tidyr, withr;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-ellipsis;/usr/local/lib/R/site-library;0.3.2;NA;R (>= 3.2);rlang (>= 0.3.0);NA;covr, testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-evaluate;/usr/local/lib/R/site-library;0.15;NA;R (>= 3.0.2);methods;NA;covr, ggplot2, lattice, testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-fansi;/usr/local/lib/R/site-library;1.0.3;NA;R (>= 3.1.0);grDevices, utils;NA;unitizer, knitr, rmarkdown;NA;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
-farver;/usr/local/lib/R/site-library;2.1.0;NA;NA;NA;NA;testthat (>= 2.1.0), covr;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-fastmap;/usr/local/lib/R/site-library;1.1.0;NA;NA;NA;NA;testthat (>= 2.1.1);NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-formatR;/usr/local/lib/R/site-library;1.12;NA;R (>= 3.2.3);NA;NA;rstudioapi, shiny, testit, rmarkdown, knitr;NA;GPL;NA;NA;NA;NA;no;4.1.2
-fs;/usr/local/lib/R/site-library;1.5.2;NA;R (>= 3.1);methods;NA;testthat, covr, pillar (>= 1.0.0), tibble (>= 1.1.0), crayon,rmarkdown, knitr, withr, spelling, vctrs (>= 0.3.0);NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-futile.logger;/usr/local/lib/R/site-library;1.4.3;NA;R (>= 3.0.0);utils, lambda.r (>= 1.1.0), futile.options;NA;testthat, jsonlite;NA;LGPL-3;NA;NA;NA;NA;no;4.1.2
-futile.options;/usr/local/lib/R/site-library;1.0.1;NA;R (>= 2.8.0);NA;NA;NA;NA;LGPL-3;NA;NA;NA;NA;no;4.1.2
-future;/usr/local/lib/R/site-library;1.26.1;NA;NA;digest, globals (>= 0.15.0), listenv (>= 0.8.0), parallel,parallelly (>= 1.30.0), tools, utils;NA;methods, RhpcBLASctl, R.rsp, markdown;NA;LGPL (>= 2.1);NA;NA;NA;NA;no;4.1.2
-future.apply;/usr/local/lib/R/site-library;1.9.0;NA;R (>= 3.2.0), future (>= 1.22.1);globals (>= 0.14.0), parallel, utils;NA;datasets, stats, tools, listenv (>= 0.8.0), R.rsp, markdown;NA;GPL (>= 2);NA;NA;NA;NA;no;4.1.2
-generics;/usr/local/lib/R/site-library;0.1.2;NA;R (>= 3.2);methods;NA;covr, pkgload, testthat (>= 3.0.0), tibble, withr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-GenomeInfoDb;/usr/local/lib/R/site-library;1.30.1;NA;R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0), S4Vectors (>=0.25.12), IRanges (>= 2.13.12);stats, stats4, utils, RCurl, GenomeInfoDbData;NA;GenomicRanges, Rsamtools, GenomicAlignments, GenomicFeatures,TxDb.Dmelanogaster.UCSC.dm3.ensGene, BSgenome,BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Celegans.UCSC.ce2,BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocStyle, knitr;NA;Artistic-2.0;NA;NA;NA;NA;no;4.1.2
-GenomeInfoDbData;/usr/local/lib/R/site-library;1.2.7;NA;R (>= 3.5.0);NA;NA;NA;NA;Artistic-2.0;NA;NA;NA;NA;no;4.1.2
-GenomicRanges;/usr/local/lib/R/site-library;1.46.1;NA;R (>= 4.0.0), methods, stats4, BiocGenerics (>= 0.37.0),S4Vectors (>= 0.27.12), IRanges (>= 2.23.9), GenomeInfoDb (>=1.15.2);utils, stats, XVector (>= 0.29.2);S4Vectors, IRanges;Matrix, Biobase, AnnotationDbi, annotate, Biostrings (>=2.25.3), SummarizedExperiment (>= 0.1.5), Rsamtools (>=1.13.53), GenomicAlignments, rtracklayer, BSgenome,GenomicFeatures, Gviz, VariantAnnotation, AnnotationHub,DESeq2, DEXSeq, edgeR, KEGGgraph, RNAseqData.HNRNPC.bam.chr14,pasillaBamSubset, KEGGREST, hgu95av2.db, hgu95av2probe,BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Hsapiens.UCSC.hg19,BSgenome.Mmusculus.UCSC.mm10,TxDb.Athaliana.BioMart.plantsmart22,TxDb.Dmelanogaster.UCSC.dm3.ensGene,TxDb.Hsapiens.UCSC.hg19.knownGene,TxDb.Mmusculus.UCSC.mm10.knownGene, RUnit, digest, knitr,rmarkdown, BiocStyle;NA;Artistic-2.0;NA;NA;NA;NA;yes;4.1.2
-gert;/usr/local/lib/R/site-library;1.6.0;NA;NA;askpass, credentials (>= 1.2.1), openssl (>= 1.4.1),rstudioapi (>= 0.11), sys, zip (>= 2.1.0);NA;spelling, knitr, rmarkdown, testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-ggplot2;/usr/local/lib/R/site-library;3.3.3;NA;R (>= 3.2);digest, glue, grDevices, grid, gtable (>= 0.1.1), isoband,MASS, mgcv, rlang (>= 0.3.0), scales (>= 0.5.0), stats, tibble,withr (>= 2.0.0);NA;covr, dplyr, ggplot2movies, hexbin, Hmisc, knitr, lattice,mapproj, maps, maptools, multcomp, munsell, nlme, profvis,quantreg, RColorBrewer, rgeos, rmarkdown, rpart, sf (>= 0.7-3),svglite (>= 1.2.0.9001), testthat (>= 2.1.0), vdiffr (>= 0.3.0);sp;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-gh;/usr/local/lib/R/site-library;1.3.0;NA;NA;cli (>= 2.0.1), gitcreds, httr (>= 1.2), ini, jsonlite;NA;covr, knitr, mockery, rmarkdown, rprojroot, spelling,testthat (>= 2.3.2), withr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-gitcreds;/usr/local/lib/R/site-library;0.1.1;NA;NA;NA;NA;codetools, testthat, knitr, mockery, oskeyring, rmarkdown,withr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-globals;/usr/local/lib/R/site-library;0.15.1;NA;R (>= 3.1.2);codetools;NA;NA;NA;LGPL (>= 2.1);NA;NA;NA;NA;no;4.1.2
-glue;/usr/local/lib/R/site-library;1.6.2;NA;R (>= 3.4);methods;NA;covr, crayon, DBI, dplyr, forcats, ggplot2, knitr, magrittr,microbenchmark, R.utils, rmarkdown, rprintf, RSQLite, stringr,testthat (>= 3.0.0), vctrs (>= 0.3.0), waldo (>= 0.3.0), withr;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-gridExtra;/usr/local/lib/R/site-library;2.3;NA;NA;gtable, grid, grDevices, graphics, utils;NA;ggplot2, egg, lattice, knitr, testthat;NA;GPL (>= 2);NA;NA;NA;NA;no;4.1.2
-gtable;/usr/local/lib/R/site-library;0.3.0;NA;R (>= 3.0);grid;NA;covr, testthat, knitr, rmarkdown, ggplot2, profvis;NA;GPL-2;NA;NA;NA;NA;no;4.1.2
-gtools;/usr/local/lib/R/site-library;3.9.2.2;NA;R (>= 2.10), methods, stats, utils;NA;NA;car, gplots, knitr, rstudioapi, SGP, taxize;NA;GPL-2;NA;NA;NA;NA;yes;4.1.2
-HiCcompare;/usr/local/lib/R/site-library;1.16.0;NA;R (>= 3.4.0), dplyr;data.table, ggplot2, gridExtra, mgcv, stats, InteractionSet,GenomicRanges, IRanges, S4Vectors, BiocParallel, QDNAseq,KernSmooth, methods, utils, graphics, pheatmap, gtools, rhdf5;NA;knitr, rmarkdown, testthat, multiHiCcompare;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-highr;/usr/local/lib/R/site-library;0.9;NA;R (>= 3.2.3);xfun (>= 0.18);NA;knitr, markdown, testit;NA;GPL;NA;NA;NA;NA;no;4.1.2
-htmltools;/usr/local/lib/R/site-library;0.5.2;NA;R (>= 2.14.1);utils, digest, grDevices, base64enc, rlang (>= 0.4.10),fastmap;NA;markdown, testthat, withr, Cairo, ragg, shiny;knitr;GPL (>= 2);NA;NA;NA;NA;yes;4.1.2
-httr;/usr/local/lib/R/site-library;1.4.3;NA;R (>= 3.2);curl (>= 3.0.0), jsonlite, mime, openssl (>= 0.8), R6;NA;covr, httpuv, jpeg, knitr, png, readr, rmarkdown, testthat(>= 0.8.0), xml2;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-impute;/usr/local/lib/R/site-library;1.68.0;NA;R (>= 2.10);NA;NA;NA;NA;GPL-2;NA;NA;NA;NA;yes;4.1.2
-ini;/usr/local/lib/R/site-library;0.3.1;NA;NA;NA;NA;testthat;NA;GPL-3;NA;NA;NA;NA;no;4.1.2
-InteractionSet;/usr/local/lib/R/site-library;1.22.0;NA;GenomicRanges, SummarizedExperiment;methods, Matrix, Rcpp, BiocGenerics, S4Vectors (>= 0.27.12),IRanges, GenomeInfoDb;Rcpp;testthat, knitr, rmarkdown, BiocStyle;NA;GPL-3;NA;NA;NA;NA;yes;4.1.2
-IRanges;/usr/local/lib/R/site-library;2.28.0;NA;R (>= 4.0.0), methods, utils, stats, BiocGenerics (>= 0.39.2),S4Vectors (>= 0.29.19);stats4;S4Vectors;XVector, GenomicRanges, Rsamtools, GenomicAlignments,GenomicFeatures, BSgenome.Celegans.UCSC.ce2, pasillaBamSubset,RUnit, BiocStyle;NA;Artistic-2.0;NA;NA;NA;NA;yes;4.1.2
-isoband;/usr/local/lib/R/site-library;0.2.5;NA;NA;grid, utils;NA;covr, ggplot2, knitr, magick, microbenchmark, rmarkdown, sf,testthat, xml2;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-jquerylib;/usr/local/lib/R/site-library;0.1.4;NA;NA;htmltools;NA;testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-jsonlite;/usr/local/lib/R/site-library;1.8.0;NA;methods;NA;NA;httr, curl, vctrs, testthat, knitr, rmarkdown, R.rsp, sf;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-knitr;/usr/local/lib/R/site-library;1.39;NA;R (>= 3.3.0);evaluate (>= 0.15), highr, methods, stringr (>= 0.6), yaml (>=2.1.19), xfun (>= 0.29), tools;NA;markdown, formatR, testit, digest, rgl (>= 0.95.1201),codetools, rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice(>= 0.10), tinytex, reticulate (>= 1.4), JuliaCall (>= 0.11.1),magick, png, jpeg, gifski, xml2 (>= 1.2.0), httr, DBI (>=0.4-1), showtext, tibble, sass, bslib, ragg, styler (>= 1.2.0),targets (>= 0.6.0);NA;GPL;NA;NA;NA;NA;no;4.1.2
-labeling;/usr/local/lib/R/site-library;0.4.2;NA;NA;stats, graphics;NA;NA;NA;MIT + file LICENSE | Unlimited;NA;NA;NA;NA;no;4.1.2
-lambda.r;/usr/local/lib/R/site-library;1.2.4;NA;R (>= 3.0.0);formatR;NA;testit;NA;LGPL-3;NA;NA;NA;NA;no;4.1.2
-lifecycle;/usr/local/lib/R/site-library;1.0.1;NA;R (>= 3.3);glue, rlang (>= 0.4.10);NA;covr, crayon, lintr, tidyverse, knitr, rmarkdown, testthat(>= 3.0.1), tools, tibble, vctrs;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-limma;/usr/local/lib/R/site-library;3.50.3;NA;R (>= 3.6.0);grDevices, graphics, stats, utils, methods;NA;affy, AnnotationDbi, BiasedUrn, Biobase, ellipse, GO.db,gplots, illuminaio, locfit, MASS, org.Hs.eg.db, splines,statmod (>= 1.2.2), vsn;NA;GPL (>=2);NA;NA;NA;NA;yes;4.1.2
-linl;/usr/local/lib/R/site-library;0.0.4;NA;NA;rmarkdown, knitr;NA;testthat, yaml;NA;GPL-3;NA;NA;NA;NA;no;4.1.2
-listenv;/usr/local/lib/R/site-library;0.8.0;NA;R (>= 3.1.2);NA;NA;R.utils, R.rsp, markdown;NA;LGPL (>= 2.1);NA;NA;NA;NA;no;4.1.2
-lubridate;/usr/local/lib/R/site-library;1.8.0;NA;methods, R (>= 3.2);generics;cpp11 (>= 0.2.7);covr, knitr, testthat (>= 2.1.0), vctrs (>= 0.3.0), rmarkdown;chron, timeDate, tis, zoo;GPL (>= 2);NA;NA;NA;NA;yes;4.1.2
-magrittr;/usr/local/lib/R/site-library;2.0.3;NA;R (>= 3.4.0);NA;NA;covr, knitr, rlang, rmarkdown, testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-marray;/usr/local/lib/R/site-library;1.72.0;NA;R (>= 2.10.0), limma, methods;NA;NA;tkWidgets;NA;LGPL;NA;NA;NA;NA;no;4.1.2
-MatrixGenerics;/usr/local/lib/R/site-library;1.6.0;NA;matrixStats (>= 0.60.1);methods;NA;sparseMatrixStats, DelayedMatrixStats, SummarizedExperiment,testthat (>= 2.1.0);NA;Artistic-2.0;NA;NA;NA;NA;no;4.1.2
-matrixStats;/usr/local/lib/R/site-library;0.62.0;NA;R (>= 2.12.0);NA;NA;base64enc, ggplot2, knitr, markdown, microbenchmark,R.devices, R.rsp;NA;Artistic-2.0;NA;NA;NA;NA;yes;4.1.2
-memoise;/usr/local/lib/R/site-library;2.0.1;NA;NA;rlang (>= 0.4.10), cachem;NA;digest, aws.s3, covr, googleAuthR, googleCloudStorageR, httr,testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-mime;/usr/local/lib/R/site-library;0.12;NA;NA;tools;NA;NA;NA;GPL;NA;NA;NA;NA;yes;4.1.2
-munsell;/usr/local/lib/R/site-library;0.5.0;NA;NA;colorspace, methods;NA;ggplot2, testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-openssl;/usr/local/lib/R/site-library;2.0.2;NA;NA;askpass;NA;curl, testthat (>= 2.1.0), digest, knitr, rmarkdown,jsonlite, jose, sodium;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-parallelly;/usr/local/lib/R/site-library;1.32.0;NA;NA;parallel, tools, utils;NA;NA;NA;LGPL (>= 2.1);NA;NA;NA;NA;no;4.1.2
-pdftools;/usr/local/lib/R/site-library;3.2.1;NA;NA;Rcpp (>= 0.12.12), qpdf;Rcpp;png, webp, tesseract, testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-pheatmap;/usr/local/lib/R/site-library;1.0.12;NA;R (>= 2.0);grid, RColorBrewer, scales, gtable, stats, grDevices, graphics;NA;NA;NA;GPL-2;NA;NA;NA;NA;no;4.1.2
-pillar;/usr/local/lib/R/site-library;1.7.0;NA;NA;cli (>= 2.3.0), crayon (>= 1.3.4), ellipsis (>= 0.3.2), fansi,glue, lifecycle, rlang (>= 0.3.0), utf8 (>= 1.1.0), utils,vctrs (>= 0.3.8);NA;bit64, debugme, DiagrammeR, dplyr, formattable, ggplot2,knitr, lubridate, nanotime, nycflights13, palmerpenguins,rmarkdown, scales, stringi, survival, testthat (>= 3.1.1),tibble, units (>= 0.7.2), vdiffr, withr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-pinp;/usr/local/lib/R/site-library;0.0.10;NA;NA;rmarkdown, knitr;NA;NA;NA;GPL-3;NA;NA;NA;NA;no;4.1.2
-pkgbuild;/usr/local/lib/R/site-library;1.3.1;NA;R (>= 3.1);callr (>= 3.2.0), cli, crayon, desc, prettyunits, R6,rprojroot, withr (>= 2.3.0);NA;Rcpp, cpp11, testthat, covr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-pkgconfig;/usr/local/lib/R/site-library;2.0.3;NA;NA;utils;NA;covr, testthat, disposables (>= 1.0.3);NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-pkgload;/usr/local/lib/R/site-library;1.3.0;NA;R (>= 3.4.0);cli (>= 3.3.0), crayon, desc, fs, glue, methods, rlang (>=1.0.3), rprojroot, utils, withr (>= 2.4.3);NA;bitops, covr, mathjaxr, pak, pkgbuild, Rcpp, remotes,rstudioapi, testthat (>= 3.1.0);NA;GPL-3;NA;NA;NA;NA;no;4.1.2
-plyr;/usr/local/lib/R/site-library;1.8.7;NA;R (>= 3.1.0);Rcpp (>= 0.11.0);Rcpp;abind, covr, doParallel, foreach, iterators, itertools,tcltk, testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-praise;/usr/local/lib/R/site-library;1.0.0;NA;NA;NA;NA;testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-prettyunits;/usr/local/lib/R/site-library;1.1.1;NA;NA;NA;NA;codetools, covr, testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-processx;/usr/local/lib/R/site-library;3.6.1;NA;R (>= 3.4.0);ps (>= 1.2.0), R6, utils;NA;callr (>= 3.7.0), cli (>= 3.3.0), codetools, covr, curl,debugme, parallel, rlang (>= 1.0.2), testthat (>= 3.0.0), withr;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-ps;/usr/local/lib/R/site-library;1.7.1;NA;R (>= 3.4);utils;NA;callr, covr, curl, pillar, pingr, processx (>= 3.1.0), R6,rlang, testthat (>= 3.0.0),;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-purrr;/usr/local/lib/R/site-library;0.3.4;NA;R (>= 3.2);magrittr (>= 1.5), rlang (>= 0.3.1);NA;covr, crayon, dplyr (>= 0.7.8), knitr, rmarkdown, testthat,tibble, tidyselect;NA;GPL-3 | file LICENSE;NA;NA;NA;NA;yes;4.1.2
-QDNAseq;/usr/local/lib/R/site-library;1.30.0;NA;R (>= 3.1.0);graphics, methods, stats, utils, Biobase (>= 2.18.0), CGHbase(>= 1.18.0), CGHcall (>= 2.18.0), DNAcopy (>= 1.32.0),GenomicRanges (>= 1.20), IRanges (>= 2.2), matrixStats (>=0.60.0), R.utils (>= 2.9.0), Rsamtools (>= 1.20), future.apply(>= 1.8.1);NA;BiocStyle (>= 1.8.0), BSgenome (>= 1.38.0), digest (>=0.6.20), GenomeInfoDb (>= 1.6.0), future (>= 1.22.1),parallelly (>= 1.28.1), R.cache (>= 0.13.0), QDNAseq.hg19,QDNAseq.mm10;NA;GPL;NA;NA;NA;NA;no;4.1.2
-qpdf;/usr/local/lib/R/site-library;1.2.0;NA;NA;Rcpp, askpass, curl;Rcpp;testthat;NA;Apache License 2.0;NA;NA;NA;NA;yes;4.1.2
-R.methodsS3;/usr/local/lib/R/site-library;1.8.2;NA;R (>= 2.13.0);utils;NA;codetools;NA;LGPL (>= 2.1);NA;NA;NA;NA;no;4.1.2
-R.oo;/usr/local/lib/R/site-library;1.25.0;NA;R (>= 2.13.0), R.methodsS3 (>= 1.8.1);methods, utils;NA;tools;NA;LGPL (>= 2.1);NA;NA;NA;NA;no;4.1.2
-R.utils;/usr/local/lib/R/site-library;2.12.0;NA;R (>= 2.14.0), R.oo (>= 1.24.0);methods, utils, tools, R.methodsS3 (>= 1.8.1);NA;datasets, digest (>= 0.6.10);NA;LGPL (>= 2.1);NA;NA;NA;NA;no;4.1.2
-R6;/usr/local/lib/R/site-library;2.5.1;NA;R (>= 3.0);NA;NA;testthat, pryr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-rappdirs;/usr/local/lib/R/site-library;0.3.3;NA;R (>= 3.2);NA;NA;roxygen2, testthat (>= 3.0.0), covr, withr;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-rcmdcheck;/usr/local/lib/R/site-library;1.4.0;NA;NA;callr (>= 3.1.1.9000), cli (>= 3.0.0), curl, desc (>= 1.2.0),digest, pkgbuild, prettyunits, R6, rprojroot, sessioninfo (>=1.1.1), utils, withr, xopen;NA;covr, knitr, mockery, processx, ps, rmarkdown, svglite,testthat, webfakes;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-RColorBrewer;/usr/local/lib/R/site-library;1.1-3;NA;R (>= 2.0.0);NA;NA;NA;NA;Apache License 2.0;NA;NA;NA;NA;no;4.1.2
-Rcpp;/usr/local/lib/R/site-library;1.0.8.3;NA;NA;methods, utils;NA;tinytest, inline, rbenchmark, pkgKitten (>= 0.1.2);NA;GPL (>= 2);NA;NA;NA;NA;yes;4.1.2
-RCurl;/usr/local/lib/R/site-library;1.98-1.7;NA;R (>= 3.4.0), methods;bitops;NA;XML;NA;BSD_3_clause + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-rematch2;/usr/local/lib/R/site-library;2.1.2;NA;NA;tibble;NA;covr, testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-remotes;/usr/local/lib/R/site-library;2.4.2;NA;R (>= 3.0.0);methods, stats, tools, utils;NA;brew, callr, codetools, curl, covr, git2r (>= 0.23.0), knitr,mockery, pkgbuild (>= 1.0.1), pingr, rmarkdown, rprojroot,testthat, webfakes, withr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-reshape2;/usr/local/lib/R/site-library;1.4.4;NA;R (>= 3.1);plyr (>= 1.8.1), Rcpp, stringr;Rcpp;covr, lattice, testthat (>= 0.8.0);NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-rhdf5;/usr/local/lib/R/site-library;2.38.1;NA;R (>= 4.0.0), methods;Rhdf5lib (>= 1.13.4), rhdf5filters;Rhdf5lib;bit64, BiocStyle, knitr, rmarkdown, testthat, microbenchmark,dplyr, ggplot2, mockery;NA;Artistic-2.0;NA;NA;NA;NA;yes;4.1.2
-rhdf5filters;/usr/local/lib/R/site-library;1.6.0;NA;NA;NA;Rhdf5lib;BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0), rhdf5 (>=2.34.0);NA;BSD_2_clause + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-Rhdf5lib;/usr/local/lib/R/site-library;1.16.0;NA;R (>= 4.0.0);NA;NA;BiocStyle, knitr, rmarkdown, tinytest, mockery;NA;Artistic-2.0;NA;NA;NA;NA;yes;4.1.2
-Rhtslib;/usr/local/lib/R/site-library;1.26.0;NA;NA;zlibbioc;zlibbioc;knitr, rmarkdown, BiocStyle;NA;LGPL (>= 2);NA;NA;NA;NA;yes;4.1.2
-rlang;/usr/local/lib/R/site-library;1.0.3;NA;R (>= 3.4.0);utils;NA;cli (>= 3.1.0), covr, crayon, fs, glue, knitr, magrittr,methods, pillar, rmarkdown, stats, testthat (>= 3.0.0), tibble,usethis, vctrs (>= 0.2.3), withr;winch;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-rmarkdown;/usr/local/lib/R/site-library;2.14;NA;R (>= 3.0);bslib (>= 0.2.5.1), evaluate (>= 0.13), htmltools (>= 0.3.5),jquerylib, jsonlite, knitr (>= 1.22), methods, stringr (>=1.2.0), tinytex (>= 0.31), tools, utils, xfun (>= 0.30), yaml(>= 2.1.19);NA;digest, dygraphs, fs, rsconnect, downlit (>= 0.4.0), katex(>= 1.4.0), sass (>= 0.4.0), shiny (>= 1.6.0), testthat (>=3.0.3), tibble, tufte, vctrs, withr (>= 2.4.2);NA;GPL-3;NA;NA;NA;NA;no;4.1.2
-roxygen2;/usr/local/lib/R/site-library;7.2.0;NA;R (>= 3.3);brew, cli (>= 3.3.0), commonmark, desc (>= 1.2.0), digest,knitr, methods, pkgload (>= 1.0.2), purrr (>= 0.3.3), R6 (>=2.1.2), rlang (>= 1.0.0), stringi, stringr (>= 1.0.0), utils,withr, xml2;cpp11;covr, R.methodsS3, R.oo, rmarkdown, testthat (>= 3.1.2),;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-rprojroot;/usr/local/lib/R/site-library;2.0.3;NA;R (>= 3.0.0);NA;NA;covr, knitr, lifecycle, mockr, rmarkdown, testthat (>=3.0.0), withr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-Rsamtools;/usr/local/lib/R/site-library;2.10.0;NA;methods, GenomeInfoDb (>= 1.1.3), GenomicRanges (>= 1.31.8),Biostrings (>= 2.47.6), R (>= 3.5.0);utils, BiocGenerics (>= 0.25.1), S4Vectors (>= 0.17.25),IRanges (>= 2.13.12), XVector (>= 0.19.7), zlibbioc, bitops,BiocParallel, stats;Rhtslib (>= 1.17.7), S4Vectors, IRanges, XVector, Biostrings;GenomicAlignments, ShortRead (>= 1.19.10), GenomicFeatures,TxDb.Dmelanogaster.UCSC.dm3.ensGene,TxDb.Hsapiens.UCSC.hg18.knownGene, RNAseqData.HNRNPC.bam.chr14,BSgenome.Hsapiens.UCSC.hg19, RUnit, BiocStyle;NA;Artistic-2.0 | file LICENSE;NA;NA;NA;NA;yes;4.1.2
-rstudioapi;/usr/local/lib/R/site-library;0.13;NA;NA;NA;NA;testthat, knitr, rmarkdown, clipr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-rversions;/usr/local/lib/R/site-library;2.1.1;NA;NA;curl, utils, xml2 (>= 1.0.0);NA;mockery, testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-S4Vectors;/usr/local/lib/R/site-library;0.32.4;NA;R (>= 4.0.0), methods, utils, stats, stats4, BiocGenerics (>=0.37.0);NA;NA;IRanges, GenomicRanges, SummarizedExperiment, Matrix,DelayedArray, ShortRead, graph, data.table, RUnit, BiocStyle;NA;Artistic-2.0;NA;NA;NA;NA;yes;4.1.2
-sass;/usr/local/lib/R/site-library;0.4.1;NA;NA;fs, rlang (>= 0.4.10), htmltools (>= 0.5.1), R6, rappdirs;NA;testthat, knitr, rmarkdown, withr, shiny, curl;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-scales;/usr/local/lib/R/site-library;1.2.0;NA;R (>= 3.2);farver (>= 2.0.3), labeling, lifecycle, munsell (>= 0.5), R6,RColorBrewer, rlang (>= 1.0.0), viridisLite;NA;bit64, covr, dichromat, ggplot2, hms (>= 0.5.0), stringi,testthat (>= 3.0.0), waldo (>= 0.4.0);NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-sessioninfo;/usr/local/lib/R/site-library;1.2.2;NA;R (>= 2.10);cli (>= 3.1.0), tools, utils;NA;callr, covr, mockery, reticulate, rmarkdown, testthat, withr;NA;GPL-2;NA;NA;NA;NA;no;4.1.2
-snow;/usr/local/lib/R/site-library;0.4-4;NA;R (>= 2.13.1), utils;NA;NA;rlecuyer;Rmpi;GPL;NA;NA;NA;NA;no;4.1.2
-snowfall;/usr/local/lib/R/site-library;1.84-6.1;NA;R (>= 2.10), snow;NA;NA;Rmpi;NA;GPL;NA;NA;NA;NA;no;4.1.2
-stringi;/usr/local/lib/R/site-library;1.7.6;NA;R (>= 3.1);tools, utils, stats;NA;NA;NA;file LICENSE;yes;NA;NA;NA;yes;4.1.2
-stringr;/usr/local/lib/R/site-library;1.4.0;NA;R (>= 3.1);glue (>= 1.2.0), magrittr, stringi (>= 1.1.7);NA;covr, htmltools, htmlwidgets, knitr, rmarkdown, testthat;NA;GPL-2 | file LICENSE;NA;NA;NA;NA;no;4.1.2
-SummarizedExperiment;/usr/local/lib/R/site-library;1.24.0;NA;R (>= 4.0.0), methods, MatrixGenerics (>= 1.1.3),GenomicRanges (>= 1.41.5), Biobase;utils, stats, tools, Matrix, BiocGenerics (>= 0.37.0),S4Vectors (>= 0.27.12), IRanges (>= 2.23.9), GenomeInfoDb (>=1.13.1), DelayedArray (>= 0.15.10);NA;HDF5Array (>= 1.7.5), annotate, AnnotationDbi, hgu95av2.db,GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene, jsonlite,rhdf5, airway, BiocStyle, knitr, rmarkdown, RUnit, testthat,digest;NA;Artistic-2.0;NA;NA;NA;NA;no;4.1.2
-sys;/usr/local/lib/R/site-library;3.4;NA;NA;NA;NA;unix (>= 1.4), spelling, testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-testthat;/usr/local/lib/R/site-library;3.1.4;NA;R (>= 3.1);brio, callr (>= 3.5.1), cli (>= 3.3.0), crayon (>= 1.3.4),desc, digest, ellipsis (>= 0.2.0), evaluate, jsonlite,lifecycle, magrittr, methods, pkgload, praise, processx, ps (>=1.3.4), R6 (>= 2.2.0), rlang (>= 1.0.1), utils, waldo (>=0.4.0), withr (>= 2.4.3);NA;covr, curl (>= 0.9.5), diffviewer (>= 0.1.0), knitr, mockery,rmarkdown, rstudioapi, shiny, usethis, vctrs (>= 0.1.0), xml2;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-tibble;/usr/local/lib/R/site-library;3.1.7;NA;R (>= 3.1.0);ellipsis (>= 0.3.2), fansi (>= 0.4.0), lifecycle (>= 1.0.0),magrittr, methods, pillar (>= 1.7.0), pkgconfig, rlang (>=1.0.1), utils, vctrs (>= 0.3.8);NA;bench, bit64, blob, brio, callr, cli, covr, crayon (>=1.3.4), DiagrammeR, dplyr, evaluate, formattable, ggplot2, hms,htmltools, knitr, lubridate, mockr, nycflights13, pkgbuild,pkgload, purrr, rmarkdown, stringi, testthat (>= 3.0.2), tidyr,withr;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-tidyselect;/usr/local/lib/R/site-library;1.1.2;NA;R (>= 3.2);ellipsis, glue (>= 1.3.0), purrr (>= 0.3.2), rlang (>= 1.0.1),vctrs (>= 0.3.0);NA;covr, crayon, dplyr, knitr, magrittr, rmarkdown, testthat (>=3.1.1), tibble (>= 2.1.3), withr;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-tint;/usr/local/lib/R/site-library;0.1.3;NA;NA;htmltools, knitr, rmarkdown;NA;ggplot2;NA;GPL-3;NA;NA;NA;NA;no;4.1.2
-tinytex;/usr/local/lib/R/site-library;0.40;NA;NA;xfun (>= 0.29);NA;testit, rstudioapi;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-usethis;/usr/local/lib/R/site-library;2.1.6;NA;R (>= 3.4);cli (>= 3.0.1), clipr (>= 0.3.0), crayon, curl (>= 2.7), desc(>= 1.4.0), fs (>= 1.3.0), gert (>= 1.4.1), gh (>= 1.2.1), glue(>= 1.3.0), jsonlite, lifecycle (>= 1.0.0), purrr, rappdirs,rlang (>= 1.0.0), rprojroot (>= 1.2), rstudioapi, stats, utils,whisker, withr (>= 2.3.0), yaml;NA;covr, knitr, magick, mockr, pkgload, rmarkdown, roxygen2 (>=7.1.2), spelling (>= 1.2), styler (>= 1.2.0), testthat (>=3.1.0);NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-utf8;/usr/local/lib/R/site-library;1.2.2;NA;R (>= 2.10);NA;NA;cli, covr, knitr, rlang, rmarkdown, testthat (>= 3.0.0),withr;NA;Apache License (== 2.0) | file LICENSE;NA;NA;NA;NA;yes;4.1.2
-vctrs;/usr/local/lib/R/site-library;0.4.1;NA;R (>= 3.3);cli (>= 3.2.0), glue, rlang (>= 1.0.2);NA;bit64, covr, crayon, dplyr (>= 0.8.5), generics, knitr,pillar (>= 1.4.4), pkgdown (>= 2.0.1), rmarkdown, testthat (>=3.0.0), tibble (>= 3.1.3), withr, xml2, waldo (>= 0.2.0),zeallot;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-viridisLite;/usr/local/lib/R/site-library;0.4.0;NA;R (>= 2.10);NA;NA;hexbin (>= 1.27.0), ggplot2 (>= 1.0.1), testthat, covr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-waldo;/usr/local/lib/R/site-library;0.4.0;NA;NA;cli, diffobj (>= 0.3.4), fansi, glue, methods, rematch2, rlang(>= 1.0.0), tibble;NA;covr, R6, testthat (>= 3.0.0), withr, xml2;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-whisker;/usr/local/lib/R/site-library;0.4;NA;NA;NA;NA;markdown;NA;GPL-3;NA;NA;NA;NA;no;4.1.2
-withr;/usr/local/lib/R/site-library;2.5.0;NA;R (>= 3.2.0);graphics, grDevices, stats;NA;callr, covr, DBI, knitr, lattice, methods, rlang, rmarkdown(>= 2.12), RSQLite, testthat (>= 3.0.0);NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-xfun;/usr/local/lib/R/site-library;0.31;NA;NA;stats, tools;NA;testit, parallel, codetools, rstudioapi, tinytex (>= 0.30),mime, markdown, knitr, htmltools, remotes, pak, rhub, renv,curl, jsonlite, rmarkdown;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-xml2;/usr/local/lib/R/site-library;1.3.3;NA;R (>= 3.1.0);methods;NA;covr, curl, httr, knitr, magrittr, mockery, rmarkdown,testthat (>= 2.1.0);NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-xopen;/usr/local/lib/R/site-library;1.0.0;NA;R (>= 3.1);processx;NA;ps, testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
-XVector;/usr/local/lib/R/site-library;0.34.0;NA;R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0), S4Vectors (>=0.27.12), IRanges (>= 2.23.9);methods, utils, tools, zlibbioc, BiocGenerics, S4Vectors,IRanges;S4Vectors, IRanges;Biostrings, drosophila2probe, RUnit;NA;Artistic-2.0;NA;NA;NA;NA;yes;4.1.2
-yaml;/usr/local/lib/R/site-library;2.3.5;NA;NA;NA;NA;RUnit;NA;BSD_3_clause + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-zip;/usr/local/lib/R/site-library;2.2.0;NA;NA;NA;NA;covr, processx, R6, testthat, withr;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-zlibbioc;/usr/local/lib/R/site-library;1.40.0;NA;NA;NA;NA;NA;NA;Artistic-2.0 + file LICENSE;NA;NA;NA;NA;yes;4.1.2
-littler;/usr/lib/R/site-library;0.3.15;NA;NA;NA;NA;simplermarkdown, docopt, rcmdcheck, foghorn;NA;GPL (>= 2);NA;NA;unix;NA;yes;4.1.2
-base;/usr/lib/R/library;4.1.2;base;NA;NA;NA;methods;NA;Part of R 4.1.2;NA;NA;NA;NA;NA;4.1.2
-boot;/usr/lib/R/library;1.3-28;recommended;R (>= 3.0.0), graphics, stats;NA;NA;MASS, survival;NA;Unlimited;NA;NA;NA;NA;no;4.0.5
-class;/usr/lib/R/library;7.3-20;recommended;R (>= 3.0.0), stats, utils;MASS;NA;NA;NA;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
-cluster;/usr/lib/R/library;2.1.2;recommended;R (>= 3.4.0);graphics, grDevices, stats, utils;NA;MASS, Matrix;NA;GPL (>= 2);NA;NA;NA;NA;yes;4.0.5
-codetools;/usr/lib/R/library;0.2-18;recommended;R (>= 2.1);NA;NA;NA;NA;GPL;NA;NA;NA;NA;no;4.0.3
-compiler;/usr/lib/R/library;4.1.2;base;NA;NA;NA;NA;NA;Part of R 4.1.2;NA;NA;NA;NA;NA;4.1.2
-datasets;/usr/lib/R/library;4.1.2;base;NA;NA;NA;NA;NA;Part of R 4.1.2;NA;NA;NA;NA;NA;4.1.2
-foreign;/usr/lib/R/library;0.8-82;recommended;R (>= 4.0.0);methods, utils, stats;NA;NA;NA;GPL (>= 2);NA;NA;NA;NA;yes;4.1.2
-graphics;/usr/lib/R/library;4.1.2;base;NA;grDevices;NA;NA;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
-grDevices;/usr/lib/R/library;4.1.2;base;NA;NA;NA;KernSmooth;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
-grid;/usr/lib/R/library;4.1.2;base;NA;grDevices, utils;NA;NA;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
-KernSmooth;/usr/lib/R/library;2.23-20;recommended;R (>= 2.5.0), stats;NA;NA;MASS, carData;NA;Unlimited;NA;NA;NA;NA;yes;4.0.5
-lattice;/usr/lib/R/library;0.20-45;recommended;R (>= 3.0.0);grid, grDevices, graphics, stats, utils;NA;KernSmooth, MASS, latticeExtra;chron;GPL (>= 2);NA;NA;NA;NA;yes;4.1.1
-MASS;/usr/lib/R/library;7.3-55;recommended;R (>= 3.3.0), grDevices, graphics, stats, utils;methods;NA;lattice, nlme, nnet, survival;NA;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
-Matrix;/usr/lib/R/library;1.4-0;recommended;R (>= 3.5.0);methods, graphics, grid, stats, utils, lattice;NA;expm, MASS;MatrixModels, graph, SparseM, sfsmisc, igraph, maptools, sp,spdep;GPL (>= 2) | file LICENCE;NA;NA;NA;NA;yes;4.1.2
-methods;/usr/lib/R/library;4.1.2;base;NA;utils, stats;NA;codetools;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
-mgcv;/usr/lib/R/library;1.8-38;recommended;R (>= 3.6.0), nlme (>= 3.1-64);methods, stats, graphics, Matrix, splines, utils;NA;parallel, survival, MASS;NA;GPL (>= 2);NA;NA;NA;NA;yes;4.1.1
-nlme;/usr/lib/R/library;3.1-155;recommended;R (>= 3.4.0);graphics, stats, utils, lattice;NA;Hmisc, MASS;NA;GPL (>= 2) | file LICENCE;NA;NA;NA;NA;yes;4.1.2
-nnet;/usr/lib/R/library;7.3-17;recommended;R (>= 3.0.0), stats, utils;NA;NA;MASS;NA;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
-parallel;/usr/lib/R/library;4.1.2;base;NA;tools, compiler;NA;methods;snow, nws, Rmpi;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
-rpart;/usr/lib/R/library;4.1.16;recommended;R (>= 2.15.0), graphics, stats, grDevices;NA;NA;survival;NA;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
-spatial;/usr/lib/R/library;7.3-15;recommended;R (>= 3.0.0), graphics, stats, utils;NA;NA;MASS;NA;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
-splines;/usr/lib/R/library;4.1.2;base;NA;graphics, stats;NA;Matrix, methods;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
-stats;/usr/lib/R/library;4.1.2;base;NA;utils, grDevices, graphics;NA;MASS, Matrix, SuppDists, methods, stats4;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
-stats4;/usr/lib/R/library;4.1.2;base;NA;graphics, methods, stats;NA;NA;NA;Part of R 4.1.2;NA;NA;NA;NA;NA;4.1.2
-survival;/usr/lib/R/library;3.2-13;recommended;R (>= 3.5.0);graphics, Matrix, methods, splines, stats, utils;NA;NA;NA;LGPL (>= 2);NA;NA;NA;NA;yes;4.1.1
-tcltk;/usr/lib/R/library;4.1.2;base;NA;utils;NA;NA;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
-tools;/usr/lib/R/library;4.1.2;base;NA;NA;NA;codetools, methods, xml2, curl, commonmark;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
-utils;/usr/lib/R/library;4.1.2;base;NA;NA;NA;methods, xml2, commonmark;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
diff --git a/ubuntu/v20.04/slivar/v1.0/Dockerfile b/ubuntu/v20.04/slivar/v1.0/Dockerfile
new file mode 100644
index 0000000000000000000000000000000000000000..a6d4a4d1372949acfab7e8797880a8c9353897c9
--- /dev/null
+++ b/ubuntu/v20.04/slivar/v1.0/Dockerfile
@@ -0,0 +1,78 @@
+#########################################################################
+##                                                                     ##
+##     Dockerfile                                                      ##
+##     Slivar                                                          ##
+##                                                                     ##
+##     Gael A. Millot                                                  ##
+##     Bioinformatics and Biostatistics Hub                            ##
+##     Computational Biology Department                                ##
+##     Institut Pasteur Paris                                          ##
+##                                                                     ##
+#########################################################################
+
+
+
+# to see the log of the building:
+# sudo docker run -ti --entrypoint bash <IMAGE_NAME>
+# cat building.log
+
+# to export the log file of the image building from the container:
+# sudo docker images
+# sudo docker run -ti --entrypoint bash <IMAGE_NAME>
+# exit
+# sudo docker container ls -a # to get all the active containers
+# sudo docker cp <containerNAMES>:/building.log </host/path/target>
+
+
+# base image: ubuntu:20.04
+FROM ubuntu:20.04
+# Warning: the name must be exactly what is written in the docker images interface, or sudo docker image ls. But here, since the image is not present locally, docker will search it on docker hub. Thus, gmillot/ubuntu:16.04 iw not correct
+
+LABEL Gael.Millot=gael.millot@pasteur.fr
+LABEL gitlab.dockerfiles="https://gitlab.pasteur.fr/gmillot/dockerfiles"
+
+
+# add gensoft deb repo pgp public key to apt trusted ones
+# and install modules
+WORKDIR /usr/bin/
+# to avoid cd. All the following commands will occurs here. In addition, opening a container will be at this node.
+
+
+# update apt-get
+RUN echo "\n\n\n\n================\n\napt-get update\n\n================\n\n\n\n" > /building.log \
+    && apt-get update --fix-missing \
+    | tee -a /building.log \
+    # install the ubuntu packages
+    && echo "\n\n\n\n================\n\napt-get install\n\n================\n\n\n\n" >> /building.log \
+    && DEBIAN_FRONTEND="noninteractive" apt-get install -y \
+        wget \
+        build-essential \
+        | tee -a /building.log
+
+
+RUN echo "\n\n\n\n================\n\slivar install\n\n================\n\n\n\n" >> /building.log \
+    && wget https://github.com/brentp/slivar/releases/download/v0.2.7/slivar \
+    && chmod 755 slivar \
+    | tee -a /building.log \
+
+    # cleaning
+RUN echo "\n\n\n\n================\n\napt-get autoremove\n\n================\n\n\n\n" >> /building.log \
+    && apt-get autoremove -y \
+    | tee -a /building.log ; echo "\n\n\n\n================\n\napt-get clean\n\n================\n\n\n\n" >> /building.log \
+    && apt-get clean \
+    | tee -a /building.log ; echo "\n\n\n\n================\n\nrm\n\n================\n\n\n\n" >> /building.log \
+    && rm -rf /var/lib/apt/lists/* \
+    | tee -a /building.log \
+    && echo "\n\n\n\n================\n\ninstalled packages\n\n================\n\n\n\n" >> /building.log \
+    && apt-cache policy \
+        locales \
+        locales-all \
+         >> /building.log
+
+ENV LC_ALL en_US.UTF-8
+ENV LANG en_US.UTF-8
+ENV LANGUAGE en_US.UTF-8
+ENV LC_NUMERIC en_US.UTF-8
+
+ENTRYPOINT ["/usr/bin/bash" , "-l"]
+# The -l option (according to the man page) makes "bash act as if it had been invoked as a login shell". Login shells read certain initialization files from your home directory, such as .bash_profile. Variables set in .bash_profile override when bash launches.
\ No newline at end of file