From 409b13c14f8e25ef7c3f3d3b437f8213f33f1ec9 Mon Sep 17 00:00:00 2001 From: gmillot <gael.millot@pasteur.fr> Date: Sat, 11 Feb 2023 18:56:58 +0100 Subject: [PATCH] release v9.7: R/v4.1.2/ig_clustering/v1.1:gitlab_v9.7 with svglite added and debugged --- R/v4.1.2/ig_clustering/v1.1/Dockerfile | 4 ++-- R/v4.1.2/ig_clustering/v1.1/building.log | 18 +++++++++--------- README.md | 8 +++++++- 3 files changed, 18 insertions(+), 12 deletions(-) diff --git a/R/v4.1.2/ig_clustering/v1.1/Dockerfile b/R/v4.1.2/ig_clustering/v1.1/Dockerfile index 5a4cc0a..8f81450 100644 --- a/R/v4.1.2/ig_clustering/v1.1/Dockerfile +++ b/R/v4.1.2/ig_clustering/v1.1/Dockerfile @@ -1,7 +1,7 @@ ######################################################################### ## ## ## Dockerfile ## -## R extended ## +## R ig_clustering ## ## ## ## Gael A. Millot ## ## Bioinformatics and Biostatistics Hub ## @@ -25,7 +25,7 @@ # sudo docker cp <containerNAMES>:/installed_r_packages.csv </host/path/target> # base image: -FROM gmillot/r_v4.1.2_extended_v3.0:gitlab_v9.3 +FROM gmillot/r_v4.1.2_ig_clustering_v1.0:gitlab_v9.3 # Warning: the name must be exactly what is written in the docker images interface, or sudo docker image ls. Here, the image is present locally, or distantly on the gmillot repo. Thus, gmillot/r-base:4.0.5 is correct. LABEL Gael.Millot=gael.millot@pasteur.fr diff --git a/R/v4.1.2/ig_clustering/v1.1/building.log b/R/v4.1.2/ig_clustering/v1.1/building.log index 9a9da7d..79897d3 100644 --- a/R/v4.1.2/ig_clustering/v1.1/building.log +++ b/R/v4.1.2/ig_clustering/v1.1/building.log @@ -13,11 +13,11 @@ apt-get update Hit:1 http://ppa.launchpad.net/c2d4u.team/c2d4u4.0+/ubuntu focal InRelease Hit:2 http://archive.ubuntu.com/ubuntu focal InRelease -Hit:3 http://ppa.launchpad.net/cran/poppler/ubuntu focal InRelease -Hit:4 http://ppa.launchpad.net/marutter/rrutter4.0/ubuntu focal InRelease -Hit:5 http://archive.ubuntu.com/ubuntu focal-updates InRelease +Hit:3 http://archive.ubuntu.com/ubuntu focal-updates InRelease +Hit:4 http://ppa.launchpad.net/cran/poppler/ubuntu focal InRelease +Hit:5 http://archive.ubuntu.com/ubuntu focal-backports InRelease Hit:6 http://security.ubuntu.com/ubuntu focal-security InRelease -Hit:7 http://archive.ubuntu.com/ubuntu focal-backports InRelease +Hit:7 http://ppa.launchpad.net/marutter/rrutter4.0/ubuntu focal InRelease Reading package lists... @@ -73,7 +73,7 @@ downloaded 120 KB The downloaded source packages are in - ‘/tmp/Rtmpwc1S2m/downloaded_packages’ + ‘/tmp/RtmpUCcqIo/downloaded_packages’ STANDARD INSTALLATION ATTEMPT FOR svglite @@ -85,12 +85,12 @@ Content type 'application/x-gzip' length 123660 bytes (120 KB) ================================================== downloaded 120 KB -foundpkgs: svglite, /tmp/Rtmpwc1S2m/downloaded_packages/svglite_2.1.1.tar.gz -files: /tmp/Rtmpwc1S2m/downloaded_packages/svglite_2.1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpwc1S2m/downloaded_packages/svglite_2.1.1.tar.gz'' +foundpkgs: svglite, /tmp/RtmpUCcqIo/downloaded_packages/svglite_2.1.1.tar.gz +files: /tmp/RtmpUCcqIo/downloaded_packages/svglite_2.1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpUCcqIo/downloaded_packages/svglite_2.1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpwc1S2m/downloaded_packages’ + ‘/tmp/RtmpUCcqIo/downloaded_packages’ diff --git a/README.md b/README.md index b14f7d4..18597a9 100644 --- a/README.md +++ b/README.md @@ -72,11 +72,17 @@ Hub-CDB Institut Pasteur & DSI Institut Pasteur Use the gitlab tag of the docker image (e.g., gitlab_v5.0) to get the description of the modifications below +### 9.7 + +Dockerfiles modified: <br /> +R/v4.1.2/ig_clustering/v1.1 at date 20230211: from gmillot/r_v4.1.2_ig_clustering_v1.0:gitlab_v9.3 with svglite added and debugged<br /> + + ### 9.6 Dockerfiles added: <br /> R/v4.1.2/extended/v3.1 at date 20230211: from gmillot/r_v4.1.2_extended_v3.0:gitlab_v9.3 with svglite added<br /> -R/v4.1.2/ig_clustering/v1.1 at date 20230211: from gmillot/r_v4.1.2_ig_clustering_v1.1:gitlab_v9.3 with svglite added<br /> +R/v4.1.2/ig_clustering/v1.1 at date 20230211: from gmillot/r_v4.1.2_ig_clustering_v1.0:gitlab_v9.3 with svglite added<br /> ### 9.5 -- GitLab