diff --git a/R/v4.1.2/extended/v1.0/building.log b/R/v4.1.2/extended/v1.0/building.log
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index 425d1ba972e28442fdcb2bfb1af3a21afc171e2b..0000000000000000000000000000000000000000
--- a/R/v4.1.2/extended/v1.0/building.log
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@@ -1,7859 +0,0 @@
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-apt-get update
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-Hit:1 http://archive.ubuntu.com/ubuntu focal InRelease
-Get:2 http://archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB]
-Hit:3 http://ppa.launchpad.net/c2d4u.team/c2d4u4.0+/ubuntu focal InRelease
-Get:4 http://archive.ubuntu.com/ubuntu focal-backports InRelease [108 kB]
-Hit:5 http://ppa.launchpad.net/marutter/rrutter4.0/ubuntu focal InRelease
-Get:6 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [1,140 kB]
-Get:7 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB]
-Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [2,057 kB]
-Get:9 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [1,645 kB]
-Get:10 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [858 kB]
-Fetched 6,036 kB in 4s (1,448 kB/s)
-Reading package lists...
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-apt-get install
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-Reading package lists...
-Building dependency tree...
-Reading state information...
-procps is already the newest version (2:3.3.16-1ubuntu2.3).
-The following additional packages will be installed:
-  libexpat1 libexpat1-dev libfreetype-dev libfreetype6-dev libuuid1 uuid-dev
-Suggested packages:
-  freetype2-doc
-Recommended packages:
-  uuid-runtime
-The following NEW packages will be installed:
-  libexpat1-dev libfontconfig1-dev libfreetype-dev libfreetype6-dev uuid-dev
-The following packages will be upgraded:
-  libexpat1 libuuid1
-2 upgraded, 5 newly installed, 0 to remove and 30 not upgraded.
-Need to get 1,478 kB of archives.
-After this operation, 5,103 kB of additional disk space will be used.
-Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuuid1 amd64 2.34-0.1ubuntu9.3 [19.9 kB]
-Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libexpat1 amd64 2.2.9-1ubuntu0.4 [74.4 kB]
-Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libexpat1-dev amd64 2.2.9-1ubuntu0.4 [117 kB]
-Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libfreetype-dev amd64 2.10.1-2ubuntu0.1 [493 kB]
-Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libfreetype6-dev amd64 2.10.1-2ubuntu0.1 [9,812 B]
-Get:6 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 uuid-dev amd64 2.34-0.1ubuntu9.3 [33.6 kB]
-Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 libfontconfig1-dev amd64 2.13.1-2ubuntu3 [731 kB]
-Fetched 1,478 kB in 3s (462 kB/s)
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-Preparing to unpack .../libuuid1_2.34-0.1ubuntu9.3_amd64.deb ...
-Unpacking libuuid1:amd64 (2.34-0.1ubuntu9.3) over (2.34-0.1ubuntu9.1) ...
-Setting up libuuid1:amd64 (2.34-0.1ubuntu9.3) ...
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-Preparing to unpack .../0-libexpat1_2.2.9-1ubuntu0.4_amd64.deb ...
-Unpacking libexpat1:amd64 (2.2.9-1ubuntu0.4) over (2.2.9-1ubuntu0.2) ...
-Selecting previously unselected package libexpat1-dev:amd64.
-Preparing to unpack .../1-libexpat1-dev_2.2.9-1ubuntu0.4_amd64.deb ...
-Unpacking libexpat1-dev:amd64 (2.2.9-1ubuntu0.4) ...
-Selecting previously unselected package libfreetype-dev:amd64.
-Preparing to unpack .../2-libfreetype-dev_2.10.1-2ubuntu0.1_amd64.deb ...
-Unpacking libfreetype-dev:amd64 (2.10.1-2ubuntu0.1) ...
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-Unpacking libfreetype6-dev:amd64 (2.10.1-2ubuntu0.1) ...
-Selecting previously unselected package uuid-dev:amd64.
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-Unpacking uuid-dev:amd64 (2.34-0.1ubuntu9.3) ...
-Selecting previously unselected package libfontconfig1-dev:amd64.
-Preparing to unpack .../5-libfontconfig1-dev_2.13.1-2ubuntu3_amd64.deb ...
-Unpacking libfontconfig1-dev:amd64 (2.13.1-2ubuntu3) ...
-Setting up libexpat1:amd64 (2.2.9-1ubuntu0.4) ...
-Setting up libfreetype-dev:amd64 (2.10.1-2ubuntu0.1) ...
-Setting up libexpat1-dev:amd64 (2.2.9-1ubuntu0.4) ...
-Setting up uuid-dev:amd64 (2.34-0.1ubuntu9.3) ...
-Setting up libfreetype6-dev:amd64 (2.10.1-2ubuntu0.1) ...
-Setting up libfontconfig1-dev:amd64 (2.13.1-2ubuntu3) ...
-Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
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-================
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-apt install
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-Reading package lists...
-Building dependency tree...
-Reading state information...
-build-essential is already the newest version (12.8ubuntu1.1).
-build-essential set to manually installed.
-The following additional packages will be installed:
-  libblkid-dev libblkid1 libcairo-gobject2 libcairo-script-interpreter2
-  libcurl3-gnutls libffi-dev libgcrypt20-dev libgit2-28 libglib2.0-dev
-  libglib2.0-dev-bin libgpg-error-dev libhttp-parser-dev libhttp-parser2.9
-  libice-dev liblzo2-2 libmbedcrypto3 libmbedtls-dev libmbedtls12
-  libmbedx509-0 libmount-dev libmount1 libpixman-1-dev libpthread-stubs0-dev
-  libselinux1-dev libsepol1-dev libsm-dev libssh2-1 libssh2-1-dev libssl1.1
-  libx11-dev libxau-dev libxcb-render0-dev libxcb-shm0-dev libxcb1-dev
-  libxdmcp-dev libxext-dev libxrender-dev python3-distutils python3-lib2to3
-  x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools
-  xtrans-dev
-Suggested packages:
-  libcairo2-doc libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev
-  libldap2-dev librtmp-dev libgcrypt20-doc libgirepository1.0-dev
-  libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils
-  libice-doc libmbedtls-doc libsm-doc libssl-doc libx11-doc libxcb-doc
-  libxext-doc libxt-doc
-The following NEW packages will be installed:
-  libblkid-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2-dev
-  libcurl3-gnutls libcurl4-gnutls-dev libffi-dev libgcrypt20-dev libgit2-28
-  libgit2-dev libglib2.0-dev libglib2.0-dev-bin libgpg-error-dev
-  libhttp-parser-dev libhttp-parser2.9 libice-dev liblzo2-2 libmbedcrypto3
-  libmbedtls-dev libmbedtls12 libmbedx509-0 libmount-dev libpixman-1-dev
-  libpthread-stubs0-dev libselinux1-dev libsepol1-dev libsm-dev libssh2-1
-  libssh2-1-dev libssl-dev libx11-dev libxau-dev libxcb-render0-dev
-  libxcb-shm0-dev libxcb1-dev libxdmcp-dev libxext-dev libxml2-dev
-  libxrender-dev libxt-dev python3-distutils python3-lib2to3 x11proto-core-dev
-  x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev
-The following packages will be upgraded:
-  libblkid1 libmount1 libssl1.1
-3 upgraded, 47 newly installed, 0 to remove and 27 not upgraded.
-Need to get 13.0 MB of archives.
-After this operation, 55.1 MB of additional disk space will be used.
-Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libblkid1 amd64 2.34-0.1ubuntu9.3 [136 kB]
-Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libmount1 amd64 2.34-0.1ubuntu9.3 [149 kB]
-Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libssl1.1 amd64 1.1.1f-1ubuntu2.11 [1,321 kB]
-Get:4 http://archive.ubuntu.com/ubuntu focal/main amd64 libcairo-gobject2 amd64 1.16.0-4ubuntu1 [17.2 kB]
-Get:5 http://archive.ubuntu.com/ubuntu focal/main amd64 liblzo2-2 amd64 2.10-2 [50.8 kB]
-Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libcairo-script-interpreter2 amd64 1.16.0-4ubuntu1 [54.2 kB]
-Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 xorg-sgml-doctools all 1:1.11-1 [12.9 kB]
-Get:8 http://archive.ubuntu.com/ubuntu focal/main amd64 x11proto-dev all 2019.2-1ubuntu1 [594 kB]
-Get:9 http://archive.ubuntu.com/ubuntu focal/main amd64 x11proto-core-dev all 2019.2-1ubuntu1 [2,620 B]
-Get:10 http://archive.ubuntu.com/ubuntu focal/main amd64 libxau-dev amd64 1:1.0.9-0ubuntu1 [9,552 B]
-Get:11 http://archive.ubuntu.com/ubuntu focal/main amd64 libxdmcp-dev amd64 1:1.1.3-0ubuntu1 [25.3 kB]
-Get:12 http://archive.ubuntu.com/ubuntu focal/main amd64 xtrans-dev all 1.4.0-1 [68.9 kB]
-Get:13 http://archive.ubuntu.com/ubuntu focal/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5,384 B]
-Get:14 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb1-dev amd64 1.14-2 [80.5 kB]
-Get:15 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libx11-dev amd64 2:1.6.9-2ubuntu1.2 [647 kB]
-Get:16 http://archive.ubuntu.com/ubuntu focal/main amd64 libxrender-dev amd64 1:0.9.10-1 [24.9 kB]
-Get:17 http://archive.ubuntu.com/ubuntu focal/main amd64 x11proto-xext-dev all 2019.2-1ubuntu1 [2,616 B]
-Get:18 http://archive.ubuntu.com/ubuntu focal/main amd64 libxext-dev amd64 2:1.3.4-0ubuntu1 [82.2 kB]
-Get:19 http://archive.ubuntu.com/ubuntu focal/main amd64 libice-dev amd64 2:1.0.10-0ubuntu1 [47.8 kB]
-Get:20 http://archive.ubuntu.com/ubuntu focal/main amd64 libsm-dev amd64 2:1.2.3-1 [17.0 kB]
-Get:21 http://archive.ubuntu.com/ubuntu focal/main amd64 libpixman-1-dev amd64 0.38.4-0ubuntu1 [243 kB]
-Get:22 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render0-dev amd64 1.14-2 [18.4 kB]
-Get:23 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb-shm0-dev amd64 1.14-2 [6,716 B]
-Get:24 http://archive.ubuntu.com/ubuntu focal/main amd64 libffi-dev amd64 3.3-4 [57.0 kB]
-Get:25 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-lib2to3 all 3.8.10-0ubuntu1~20.04 [76.3 kB]
-Get:26 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-distutils all 3.8.10-0ubuntu1~20.04 [141 kB]
-Get:27 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libglib2.0-dev-bin amd64 2.64.6-1~ubuntu20.04.4 [109 kB]
-Get:28 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libblkid-dev amd64 2.34-0.1ubuntu9.3 [167 kB]
-Get:29 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libmount-dev amd64 2.34-0.1ubuntu9.3 [176 kB]
-Get:30 http://archive.ubuntu.com/ubuntu focal/main amd64 libsepol1-dev amd64 3.0-1 [325 kB]
-Get:31 http://archive.ubuntu.com/ubuntu focal/main amd64 libselinux1-dev amd64 3.0-1build2 [151 kB]
-Get:32 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libglib2.0-dev amd64 2.64.6-1~ubuntu20.04.4 [1,506 kB]
-Get:33 http://archive.ubuntu.com/ubuntu focal/main amd64 libcairo2-dev amd64 1.16.0-4ubuntu1 [627 kB]
-Get:34 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl3-gnutls amd64 7.68.0-1ubuntu2.7 [232 kB]
-Get:35 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-gnutls-dev amd64 7.68.0-1ubuntu2.7 [319 kB]
-Get:36 http://archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB]
-Get:37 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1.1 [471 kB]
-Get:38 http://archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB]
-Get:39 http://archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB]
-Get:40 http://archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB]
-Get:41 http://archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB]
-Get:42 http://archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1 amd64 1.8.0-2.1build1 [75.4 kB]
-Get:43 http://archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB]
-Get:44 http://archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB]
-Get:45 http://archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB]
-Get:46 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libssl-dev amd64 1.1.1f-1ubuntu2.11 [1,584 kB]
-Get:47 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2-dev amd64 2.9.10+dfsg-5ubuntu0.20.04.1 [735 kB]
-Get:48 http://archive.ubuntu.com/ubuntu focal/main amd64 libxt-dev amd64 1:1.1.5-1 [395 kB]
-Get:49 http://archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB]
-Get:50 http://archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB]
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-Preparing to unpack .../libblkid1_2.34-0.1ubuntu9.3_amd64.deb ...
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-Preparing to unpack .../00-libssl1.1_1.1.1f-1ubuntu2.11_amd64.deb ...
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-trying URL 'https://cran.irsn.fr/src/contrib/fs_1.5.2.tar.gz'
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-==================================================
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-trying URL 'https://cran.irsn.fr/src/contrib/httr_1.4.2.tar.gz'
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-==================================================
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-trying URL 'https://cran.irsn.fr/src/contrib/lifecycle_1.0.1.tar.gz'
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-==================================================
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-==================================================
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-
-trying URL 'https://cran.irsn.fr/src/contrib/pkgbuild_1.3.1.tar.gz'
-Content type 'application/x-gzip' length 31937 bytes (31 KB)
-==================================================
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-==================================================
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-==================================================
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-==================================================
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-==================================================
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-==================================================
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-
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-	/tmp/RtmpO9g3O4/downloaded_packages/xfun_0.30.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/diffobj_0.3.5.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/fansi_1.0.2.tar.gz, 
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-	/tmp/RtmpO9g3O4/downloaded_packages/cpp11_0.4.2.tar.gz, 
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-	/tmp/RtmpO9g3O4/downloaded_packages/evaluate_0.15.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/magrittr_2.0.2.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/praise_1.0.0.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/ps_1.6.0.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/waldo_0.3.1.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/usethis_2.1.5.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/callr_3.7.0.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/cli_3.2.0.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/desc_1.4.1.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/ellipsis_0.3.2.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/fs_1.5.2.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/httr_1.4.2.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/lifecycle_1.0.1.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/memoise_2.0.1.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/pkgbuild_1.3.1.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/pkgload_1.2.4.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/rcmdcheck_1.4.0.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/remotes_2.4.2.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/rlang_1.0.2.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/roxygen2_7.1.2.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/rstudioapi_0.13.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/rversions_2.1.1.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/sessioninfo_1.2.2.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/testthat_3.1.2.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/withr_2.5.0.tar.gz, 
-	/tmp/RtmpO9g3O4/downloaded_packages/devtools_2.4.3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/utf8_1.2.2.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/pkgconfig_2.0.3.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/sys_3.4.tar.gz''
-4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/zip_2.2.0.tar.gz''
-5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/gitcreds_0.1.1.tar.gz''
-6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/ini_0.3.1.tar.gz''
-7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/fastmap_1.1.0.tar.gz''
-8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/xfun_0.30.tar.gz''
-9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/fansi_1.0.2.tar.gz''
-10): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/clipr_0.8.0.tar.gz''
-11): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/crayon_1.5.0.tar.gz''
-12): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/curl_4.3.2.tar.gz''
-13): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/glue_1.6.2.tar.gz''
-14): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/jsonlite_1.8.0.tar.gz''
-15): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/rappdirs_0.3.3.tar.gz''
-16): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/rprojroot_2.0.2.tar.gz''
-17): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/whisker_0.4.tar.gz''
-18): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/yaml_2.3.5.tar.gz''
-19): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/R6_2.5.1.tar.gz''
-20): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/mime_0.12.tar.gz''
-21): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/prettyunits_1.1.1.tar.gz''
-22): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/digest_0.6.29.tar.gz''
-23): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/brew_1.0-7.tar.gz''
-24): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/commonmark_1.8.0.tar.gz''
-25): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/stringi_1.7.6.tar.gz''
-26): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/xml2_1.3.3.tar.gz''
-27): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/cpp11_0.4.2.tar.gz''
-28): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/brio_1.1.3.tar.gz''
-29): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/evaluate_0.15.tar.gz''
-30): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/magrittr_2.0.2.tar.gz''
-31): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/praise_1.0.0.tar.gz''
-32): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/ps_1.6.0.tar.gz''
-33): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/fs_1.5.2.tar.gz''
-34): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/remotes_2.4.2.tar.gz''
-35): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/rlang_1.0.2.tar.gz''
-36): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/rstudioapi_0.13.tar.gz''
-37): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/withr_2.5.0.tar.gz''
-38): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/askpass_1.1.tar.gz''
-39): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/highr_0.9.tar.gz''
-40): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/diffobj_0.3.5.tar.gz''
-41): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/purrr_0.3.4.tar.gz''
-42): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/processx_3.5.2.tar.gz''
-43): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/cachem_1.0.6.tar.gz''
-44): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/stringr_1.4.0.tar.gz''
-45): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/cli_3.2.0.tar.gz''
-46): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/ellipsis_0.3.2.tar.gz''
-47): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/lifecycle_1.0.1.tar.gz''
-48): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/rversions_2.1.1.tar.gz''
-49): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/vctrs_0.3.8.tar.gz''
-50): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/openssl_2.0.0.tar.gz''
-51): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/xopen_1.0.0.tar.gz''
-52): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/knitr_1.37.tar.gz''
-53): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/callr_3.7.0.tar.gz''
-54): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/desc_1.4.1.tar.gz''
-55): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/memoise_2.0.1.tar.gz''
-56): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/sessioninfo_1.2.2.tar.gz''
-57): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/pillar_1.7.0.tar.gz''
-58): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/credentials_1.3.2.tar.gz''
-59): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/httr_1.4.2.tar.gz''
-60): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/pkgbuild_1.3.1.tar.gz''
-61): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/pkgload_1.2.4.tar.gz''
-62): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/tibble_3.1.6.tar.gz''
-63): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/gert_1.5.0.tar.gz''
-64): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/gh_1.3.0.tar.gz''
-65): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/rcmdcheck_1.4.0.tar.gz''
-66): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/roxygen2_7.1.2.tar.gz''
-67): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/rematch2_2.1.2.tar.gz''
-68): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/usethis_2.1.5.tar.gz''
-69): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/waldo_0.3.1.tar.gz''
-70): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/testthat_3.1.2.tar.gz''
-71): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpO9g3O4/downloaded_packages/devtools_2.4.3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpO9g3O4/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 3 / 238: abind
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/abind_1.4-5.tar.gz'
-Content type 'application/x-gzip' length 21810 bytes (21 KB)
-==================================================
-downloaded 21 KB
-
-foundpkgs: abind, /tmp/RtmpCSLZBg/downloaded_packages/abind_1.4-5.tar.gz
-files: /tmp/RtmpCSLZBg/downloaded_packages/abind_1.4-5.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpCSLZBg/downloaded_packages/abind_1.4-5.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpCSLZBg/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 4 / 238: annotate
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜annotateâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 5 / 238: AnnotationDbi
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜AnnotationDbiâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 6 / 238: askpass
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/askpass_1.1.tar.gz'
-Content type 'application/x-gzip' length 5730 bytes
-==================================================
-downloaded 5730 bytes
-
-foundpkgs: askpass, /tmp/Rtmpyd2WKM/downloaded_packages/askpass_1.1.tar.gz
-files: /tmp/Rtmpyd2WKM/downloaded_packages/askpass_1.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyd2WKM/downloaded_packages/askpass_1.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpyd2WKM/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 7 / 238: assertthat
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/assertthat_0.2.1.tar.gz'
-Content type 'application/x-gzip' length 12742 bytes (12 KB)
-==================================================
-downloaded 12 KB
-
-foundpkgs: assertthat, /tmp/RtmpOUx0XH/downloaded_packages/assertthat_0.2.1.tar.gz
-files: /tmp/RtmpOUx0XH/downloaded_packages/assertthat_0.2.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpOUx0XH/downloaded_packages/assertthat_0.2.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpOUx0XH/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 8 / 238: backports
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/backports_1.4.1.tar.gz'
-Content type 'application/x-gzip' length 26201 bytes (25 KB)
-==================================================
-downloaded 25 KB
-
-foundpkgs: backports, /tmp/RtmpXY0AqQ/downloaded_packages/backports_1.4.1.tar.gz
-files: /tmp/RtmpXY0AqQ/downloaded_packages/backports_1.4.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXY0AqQ/downloaded_packages/backports_1.4.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpXY0AqQ/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 9 / 238: base64enc
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/base64enc_0.1-3.tar.gz'
-Content type 'application/x-gzip' length 7833 bytes
-==================================================
-downloaded 7833 bytes
-
-foundpkgs: base64enc, /tmp/RtmpuuTSoh/downloaded_packages/base64enc_0.1-3.tar.gz
-files: /tmp/RtmpuuTSoh/downloaded_packages/base64enc_0.1-3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpuuTSoh/downloaded_packages/base64enc_0.1-3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpuuTSoh/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 10 / 238: BH
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/BH_1.78.0-0.tar.gz'
-Content type 'application/x-gzip' length 13269768 bytes (12.7 MB)
-==================================================
-downloaded 12.7 MB
-
-foundpkgs: BH, /tmp/RtmpwfRtJp/downloaded_packages/BH_1.78.0-0.tar.gz
-files: /tmp/RtmpwfRtJp/downloaded_packages/BH_1.78.0-0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpwfRtJp/downloaded_packages/BH_1.78.0-0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpwfRtJp/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 11 / 238: Biobase
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜Biobaseâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 12 / 238: BiocGenerics
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜BiocGenericsâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 13 / 238: BiocParallel
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜BiocParallelâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 14 / 238: BiocVersion
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜BiocVersionâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 15 / 238: Biostrings
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜Biostringsâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 16 / 238: bit
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/bit_4.0.4.tar.gz'
-Content type 'application/x-gzip' length 279723 bytes (273 KB)
-==================================================
-downloaded 273 KB
-
-foundpkgs: bit, /tmp/RtmpBDbJXX/downloaded_packages/bit_4.0.4.tar.gz
-files: /tmp/RtmpBDbJXX/downloaded_packages/bit_4.0.4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpBDbJXX/downloaded_packages/bit_4.0.4.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpBDbJXX/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 17 / 238: bit64
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/bit64_4.0.5.tar.gz'
-Content type 'application/x-gzip' length 135091 bytes (131 KB)
-==================================================
-downloaded 131 KB
-
-foundpkgs: bit64, /tmp/RtmpUM5lPt/downloaded_packages/bit64_4.0.5.tar.gz
-files: /tmp/RtmpUM5lPt/downloaded_packages/bit64_4.0.5.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpUM5lPt/downloaded_packages/bit64_4.0.5.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpUM5lPt/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 18 / 238: bitops
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/bitops_1.0-7.tar.gz'
-Content type 'application/x-gzip' length 10809 bytes (10 KB)
-==================================================
-downloaded 10 KB
-
-foundpkgs: bitops, /tmp/RtmppAtYFy/downloaded_packages/bitops_1.0-7.tar.gz
-files: /tmp/RtmppAtYFy/downloaded_packages/bitops_1.0-7.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmppAtYFy/downloaded_packages/bitops_1.0-7.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmppAtYFy/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 19 / 238: blob
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/blob_1.2.2.tar.gz'
-Content type 'application/x-gzip' length 10194 bytes
-==================================================
-downloaded 10194 bytes
-
-foundpkgs: blob, /tmp/Rtmp5csR0N/downloaded_packages/blob_1.2.2.tar.gz
-files: /tmp/Rtmp5csR0N/downloaded_packages/blob_1.2.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp5csR0N/downloaded_packages/blob_1.2.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp5csR0N/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 20 / 238: brew
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/brew_1.0-7.tar.gz'
-Content type 'application/x-gzip' length 55517 bytes (54 KB)
-==================================================
-downloaded 54 KB
-
-foundpkgs: brew, /tmp/RtmpdHq3A9/downloaded_packages/brew_1.0-7.tar.gz
-files: /tmp/RtmpdHq3A9/downloaded_packages/brew_1.0-7.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdHq3A9/downloaded_packages/brew_1.0-7.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpdHq3A9/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 21 / 238: brio
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/brio_1.1.3.tar.gz'
-Content type 'application/x-gzip' length 12629 bytes (12 KB)
-==================================================
-downloaded 12 KB
-
-foundpkgs: brio, /tmp/RtmpynaWdr/downloaded_packages/brio_1.1.3.tar.gz
-files: /tmp/RtmpynaWdr/downloaded_packages/brio_1.1.3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpynaWdr/downloaded_packages/brio_1.1.3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpynaWdr/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 22 / 238: broom
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies â€˜colorspaceâ€™, â€˜farverâ€™, â€˜labelingâ€™, â€˜munsellâ€™, â€˜RColorBrewerâ€™, â€˜viridisLiteâ€™, â€˜tidyselectâ€™, â€˜gtableâ€™, â€˜isobandâ€™, â€˜scalesâ€™, â€˜dplyrâ€™, â€˜genericsâ€™, â€˜tidyrâ€™, â€˜ggplot2â€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/colorspace_2.0-3.tar.gz'
-Content type 'application/x-gzip' length 2199185 bytes (2.1 MB)
-==================================================
-downloaded 2.1 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/farver_2.1.0.tar.gz'
-Content type 'application/x-gzip' length 1281864 bytes (1.2 MB)
-==================================================
-downloaded 1.2 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/labeling_0.4.2.tar.gz'
-Content type 'application/x-gzip' length 10156 bytes
-==================================================
-downloaded 10156 bytes
-
-trying URL 'https://cran.irsn.fr/src/contrib/munsell_0.5.0.tar.gz'
-Content type 'application/x-gzip' length 182653 bytes (178 KB)
-==================================================
-downloaded 178 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/RColorBrewer_1.1-2.tar.gz'
-Content type 'application/x-gzip' length 11532 bytes (11 KB)
-==================================================
-downloaded 11 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/viridisLite_0.4.0.tar.gz'
-Content type 'application/x-gzip' length 1267080 bytes (1.2 MB)
-==================================================
-downloaded 1.2 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/tidyselect_1.1.2.tar.gz'
-Content type 'application/x-gzip' length 92085 bytes (89 KB)
-==================================================
-downloaded 89 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/gtable_0.3.0.tar.gz'
-Content type 'application/x-gzip' length 368081 bytes (359 KB)
-==================================================
-downloaded 359 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/isoband_0.2.5.tar.gz'
-Content type 'application/x-gzip' length 1671911 bytes (1.6 MB)
-==================================================
-downloaded 1.6 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/scales_1.1.1.tar.gz'
-Content type 'application/x-gzip' length 515201 bytes (503 KB)
-==================================================
-downloaded 503 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/dplyr_1.0.8.tar.gz'
-Content type 'application/x-gzip' length 880713 bytes (860 KB)
-==================================================
-downloaded 860 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/generics_0.1.2.tar.gz'
-Content type 'application/x-gzip' length 123325 bytes (120 KB)
-==================================================
-downloaded 120 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/tidyr_1.2.0.tar.gz'
-Content type 'application/x-gzip' length 744570 bytes (727 KB)
-==================================================
-downloaded 727 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/ggplot2_3.3.5.tar.gz'
-Content type 'application/x-gzip' length 3063309 bytes (2.9 MB)
-==================================================
-downloaded 2.9 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/broom_0.7.12.tar.gz'
-Content type 'application/x-gzip' length 633897 bytes (619 KB)
-==================================================
-downloaded 619 KB
-
-foundpkgs: colorspace, farver, labeling, munsell, RColorBrewer, viridisLite, tidyselect, gtable, isoband, scales, dplyr, generics, tidyr, ggplot2, broom, /tmp/RtmpSMgtd8/downloaded_packages/colorspace_2.0-3.tar.gz, /tmp/RtmpSMgtd8/downloaded_packages/farver_2.1.0.tar.gz, /tmp/RtmpSMgtd8/downloaded_packages/labeling_0.4.2.tar.gz, /tmp/RtmpSMgtd8/downloaded_packages/munsell_0.5.0.tar.gz, /tmp/RtmpSMgtd8/downloaded_packages/RColorBrewer_1.1-2.tar.gz, /tmp/RtmpSMgtd8/downloaded_packages/viridisLite_0.4.0.tar.gz, /tmp/RtmpSMgtd8/downloaded_packages/tidyselect_1.1.2.tar.gz, /tmp/RtmpSMgtd8/downloaded_packages/gtable_0.3.0.tar.gz, /tmp/RtmpSMgtd8/downloaded_packages/isoband_0.2.5.tar.gz, /tmp/RtmpSMgtd8/downloaded_packages/scales_1.1.1.tar.gz, /tmp/RtmpSMgtd8/downloaded_packages/dplyr_1.0.8.tar.gz, /tmp/RtmpSMgtd8/downloaded_packages/generics_0.1.2.tar.gz, /tmp/RtmpSMgtd8/downloaded_packages/tidyr_1.2.0.tar.gz, /tmp/RtmpSMgtd8/downloaded_packages/ggplot2_3.3.5.tar.gz, /tmp/RtmpSMgtd8/downloaded_packages/broom_0.7.12.tar.gz
-files: /tmp/RtmpSMgtd8/downloaded_packages/colorspace_2.0-3.tar.gz, 
-	/tmp/RtmpSMgtd8/downloaded_packages/farver_2.1.0.tar.gz, 
-	/tmp/RtmpSMgtd8/downloaded_packages/labeling_0.4.2.tar.gz, 
-	/tmp/RtmpSMgtd8/downloaded_packages/munsell_0.5.0.tar.gz, 
-	/tmp/RtmpSMgtd8/downloaded_packages/RColorBrewer_1.1-2.tar.gz, 
-	/tmp/RtmpSMgtd8/downloaded_packages/viridisLite_0.4.0.tar.gz, 
-	/tmp/RtmpSMgtd8/downloaded_packages/tidyselect_1.1.2.tar.gz, 
-	/tmp/RtmpSMgtd8/downloaded_packages/gtable_0.3.0.tar.gz, 
-	/tmp/RtmpSMgtd8/downloaded_packages/isoband_0.2.5.tar.gz, 
-	/tmp/RtmpSMgtd8/downloaded_packages/scales_1.1.1.tar.gz, 
-	/tmp/RtmpSMgtd8/downloaded_packages/dplyr_1.0.8.tar.gz, 
-	/tmp/RtmpSMgtd8/downloaded_packages/generics_0.1.2.tar.gz, 
-	/tmp/RtmpSMgtd8/downloaded_packages/tidyr_1.2.0.tar.gz, 
-	/tmp/RtmpSMgtd8/downloaded_packages/ggplot2_3.3.5.tar.gz, 
-	/tmp/RtmpSMgtd8/downloaded_packages/broom_0.7.12.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/colorspace_2.0-3.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/farver_2.1.0.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/labeling_0.4.2.tar.gz''
-4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/RColorBrewer_1.1-2.tar.gz''
-5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/viridisLite_0.4.0.tar.gz''
-6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/tidyselect_1.1.2.tar.gz''
-7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/gtable_0.3.0.tar.gz''
-8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/isoband_0.2.5.tar.gz''
-9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/generics_0.1.2.tar.gz''
-10): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/munsell_0.5.0.tar.gz''
-11): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/dplyr_1.0.8.tar.gz''
-12): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/scales_1.1.1.tar.gz''
-13): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/tidyr_1.2.0.tar.gz''
-14): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/ggplot2_3.3.5.tar.gz''
-15): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMgtd8/downloaded_packages/broom_0.7.12.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpSMgtd8/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 23 / 238: cachem
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/cachem_1.0.6.tar.gz'
-Content type 'application/x-gzip' length 25413 bytes (24 KB)
-==================================================
-downloaded 24 KB
-
-foundpkgs: cachem, /tmp/RtmpXHx25j/downloaded_packages/cachem_1.0.6.tar.gz
-files: /tmp/RtmpXHx25j/downloaded_packages/cachem_1.0.6.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXHx25j/downloaded_packages/cachem_1.0.6.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpXHx25j/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 24 / 238: Cairo
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/Cairo_1.5-14.tar.gz'
-Content type 'application/x-gzip' length 90677 bytes (88 KB)
-==================================================
-downloaded 88 KB
-
-foundpkgs: Cairo, /tmp/Rtmpd6STBC/downloaded_packages/Cairo_1.5-14.tar.gz
-files: /tmp/Rtmpd6STBC/downloaded_packages/Cairo_1.5-14.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpd6STBC/downloaded_packages/Cairo_1.5-14.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpd6STBC/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 25 / 238: callr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/callr_3.7.0.tar.gz'
-Content type 'application/x-gzip' length 74518 bytes (72 KB)
-==================================================
-downloaded 72 KB
-
-foundpkgs: callr, /tmp/RtmpcNDO58/downloaded_packages/callr_3.7.0.tar.gz
-files: /tmp/RtmpcNDO58/downloaded_packages/callr_3.7.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpcNDO58/downloaded_packages/callr_3.7.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpcNDO58/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 26 / 238: car
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies â€˜numDerivâ€™, â€˜SparseMâ€™, â€˜MatrixModelsâ€™, â€˜spâ€™, â€˜minqaâ€™, â€˜nloptrâ€™, â€˜Rcppâ€™, â€˜RcppEigenâ€™, â€˜carDataâ€™, â€˜pbkrtestâ€™, â€˜quantregâ€™, â€˜maptoolsâ€™, â€˜lme4â€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/numDeriv_2016.8-1.1.tar.gz'
-Content type 'application/x-gzip' length 76053 bytes (74 KB)
-==================================================
-downloaded 74 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/SparseM_1.81.tar.gz'
-Content type 'application/x-gzip' length 735100 bytes (717 KB)
-==================================================
-downloaded 717 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/MatrixModels_0.5-0.tar.gz'
-Content type 'application/x-gzip' length 24045 bytes (23 KB)
-==================================================
-downloaded 23 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/sp_1.4-6.tar.gz'
-Content type 'application/x-gzip' length 1423843 bytes (1.4 MB)
-==================================================
-downloaded 1.4 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/minqa_1.2.4.tar.gz'
-Content type 'application/x-gzip' length 53548 bytes (52 KB)
-==================================================
-downloaded 52 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/nloptr_2.0.0.tar.gz'
-Content type 'application/x-gzip' length 2219414 bytes (2.1 MB)
-==================================================
-downloaded 2.1 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/Rcpp_1.0.8.tar.gz'
-Content type 'application/x-gzip' length 3036631 bytes (2.9 MB)
-==================================================
-downloaded 2.9 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/RcppEigen_0.3.3.9.1.tar.gz'
-Content type 'application/x-gzip' length 1633360 bytes (1.6 MB)
-==================================================
-downloaded 1.6 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/carData_3.0-5.tar.gz'
-Content type 'application/x-gzip' length 1004201 bytes (980 KB)
-==================================================
-downloaded 980 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/pbkrtest_0.5.1.tar.gz'
-Content type 'application/x-gzip' length 246327 bytes (240 KB)
-==================================================
-downloaded 240 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/quantreg_5.88.tar.gz'
-Content type 'application/x-gzip' length 1016964 bytes (993 KB)
-==================================================
-downloaded 993 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/maptools_1.1-3.tar.gz'
-Content type 'application/x-gzip' length 1643257 bytes (1.6 MB)
-==================================================
-downloaded 1.6 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/lme4_1.1-28.tar.gz'
-Content type 'application/x-gzip' length 3306775 bytes (3.2 MB)
-==================================================
-downloaded 3.2 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/car_3.0-12.tar.gz'
-Content type 'application/x-gzip' length 331330 bytes (323 KB)
-==================================================
-downloaded 323 KB
-
-foundpkgs: numDeriv, SparseM, MatrixModels, sp, minqa, nloptr, Rcpp, RcppEigen, carData, pbkrtest, quantreg, maptools, lme4, car, /tmp/RtmpauBw4q/downloaded_packages/numDeriv_2016.8-1.1.tar.gz, /tmp/RtmpauBw4q/downloaded_packages/SparseM_1.81.tar.gz, /tmp/RtmpauBw4q/downloaded_packages/MatrixModels_0.5-0.tar.gz, /tmp/RtmpauBw4q/downloaded_packages/sp_1.4-6.tar.gz, /tmp/RtmpauBw4q/downloaded_packages/minqa_1.2.4.tar.gz, /tmp/RtmpauBw4q/downloaded_packages/nloptr_2.0.0.tar.gz, /tmp/RtmpauBw4q/downloaded_packages/Rcpp_1.0.8.tar.gz, /tmp/RtmpauBw4q/downloaded_packages/RcppEigen_0.3.3.9.1.tar.gz, /tmp/RtmpauBw4q/downloaded_packages/carData_3.0-5.tar.gz, /tmp/RtmpauBw4q/downloaded_packages/pbkrtest_0.5.1.tar.gz, /tmp/RtmpauBw4q/downloaded_packages/quantreg_5.88.tar.gz, /tmp/RtmpauBw4q/downloaded_packages/maptools_1.1-3.tar.gz, /tmp/RtmpauBw4q/downloaded_packages/lme4_1.1-28.tar.gz, /tmp/RtmpauBw4q/downloaded_packages/car_3.0-12.tar.gz
-files: /tmp/RtmpauBw4q/downloaded_packages/numDeriv_2016.8-1.1.tar.gz, 
-	/tmp/RtmpauBw4q/downloaded_packages/SparseM_1.81.tar.gz, 
-	/tmp/RtmpauBw4q/downloaded_packages/MatrixModels_0.5-0.tar.gz, 
-	/tmp/RtmpauBw4q/downloaded_packages/sp_1.4-6.tar.gz, 
-	/tmp/RtmpauBw4q/downloaded_packages/minqa_1.2.4.tar.gz, 
-	/tmp/RtmpauBw4q/downloaded_packages/nloptr_2.0.0.tar.gz, 
-	/tmp/RtmpauBw4q/downloaded_packages/Rcpp_1.0.8.tar.gz, 
-	/tmp/RtmpauBw4q/downloaded_packages/RcppEigen_0.3.3.9.1.tar.gz, 
-	/tmp/RtmpauBw4q/downloaded_packages/carData_3.0-5.tar.gz, 
-	/tmp/RtmpauBw4q/downloaded_packages/pbkrtest_0.5.1.tar.gz, 
-	/tmp/RtmpauBw4q/downloaded_packages/quantreg_5.88.tar.gz, 
-	/tmp/RtmpauBw4q/downloaded_packages/maptools_1.1-3.tar.gz, 
-	/tmp/RtmpauBw4q/downloaded_packages/lme4_1.1-28.tar.gz, 
-	/tmp/RtmpauBw4q/downloaded_packages/car_3.0-12.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpauBw4q/downloaded_packages/numDeriv_2016.8-1.1.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpauBw4q/downloaded_packages/SparseM_1.81.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpauBw4q/downloaded_packages/MatrixModels_0.5-0.tar.gz''
-4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpauBw4q/downloaded_packages/sp_1.4-6.tar.gz''
-Warning in install.packages(pkgs = "car", lib = "/usr/local/lib/R/site-library",  :
-  installation of package â€˜nloptrâ€™ had non-zero exit status
-6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpauBw4q/downloaded_packages/Rcpp_1.0.8.tar.gz''
-7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpauBw4q/downloaded_packages/carData_3.0-5.tar.gz''
-8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpauBw4q/downloaded_packages/minqa_1.2.4.tar.gz''
-9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpauBw4q/downloaded_packages/RcppEigen_0.3.3.9.1.tar.gz''
-10): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpauBw4q/downloaded_packages/quantreg_5.88.tar.gz''
-11): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpauBw4q/downloaded_packages/maptools_1.1-3.tar.gz''
-Warning in install.packages(pkgs = "car", lib = "/usr/local/lib/R/site-library",  :
-  installation of package â€˜lme4â€™ had non-zero exit status
-Warning in install.packages(pkgs = "car", lib = "/usr/local/lib/R/site-library",  :
-  installation of package â€˜pbkrtestâ€™ had non-zero exit status
-Warning in install.packages(pkgs = "car", lib = "/usr/local/lib/R/site-library",  :
-  installation of package â€˜carâ€™ had non-zero exit status
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpauBw4q/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 27 / 238: carData
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/carData_3.0-5.tar.gz'
-Content type 'application/x-gzip' length 1004201 bytes (980 KB)
-==================================================
-downloaded 980 KB
-
-foundpkgs: carData, /tmp/Rtmp6msHFm/downloaded_packages/carData_3.0-5.tar.gz
-files: /tmp/Rtmp6msHFm/downloaded_packages/carData_3.0-5.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6msHFm/downloaded_packages/carData_3.0-5.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp6msHFm/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 28 / 238: caTools
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/caTools_1.18.2.tar.gz'
-Content type 'application/x-gzip' length 64960 bytes (63 KB)
-==================================================
-downloaded 63 KB
-
-foundpkgs: caTools, /tmp/RtmpMBh3HY/downloaded_packages/caTools_1.18.2.tar.gz
-files: /tmp/RtmpMBh3HY/downloaded_packages/caTools_1.18.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpMBh3HY/downloaded_packages/caTools_1.18.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpMBh3HY/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 29 / 238: cellranger
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependency â€˜rematchâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/rematch_1.0.1.tar.gz'
-Content type 'application/x-gzip' length 3719 bytes
-==================================================
-downloaded 3719 bytes
-
-trying URL 'https://cran.irsn.fr/src/contrib/cellranger_1.1.0.tar.gz'
-Content type 'application/x-gzip' length 63857 bytes (62 KB)
-==================================================
-downloaded 62 KB
-
-foundpkgs: rematch, cellranger, /tmp/Rtmp5t1YSp/downloaded_packages/rematch_1.0.1.tar.gz, /tmp/Rtmp5t1YSp/downloaded_packages/cellranger_1.1.0.tar.gz
-files: /tmp/Rtmp5t1YSp/downloaded_packages/rematch_1.0.1.tar.gz, 
-	/tmp/Rtmp5t1YSp/downloaded_packages/cellranger_1.1.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp5t1YSp/downloaded_packages/rematch_1.0.1.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp5t1YSp/downloaded_packages/cellranger_1.1.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp5t1YSp/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 30 / 238: CGHbase
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜CGHbaseâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 31 / 238: CGHcall
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜CGHcallâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 32 / 238: cli
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/cli_3.2.0.tar.gz'
-Content type 'application/x-gzip' length 493192 bytes (481 KB)
-==================================================
-downloaded 481 KB
-
-foundpkgs: cli, /tmp/RtmpnxuJMW/downloaded_packages/cli_3.2.0.tar.gz
-files: /tmp/RtmpnxuJMW/downloaded_packages/cli_3.2.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpnxuJMW/downloaded_packages/cli_3.2.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpnxuJMW/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 33 / 238: clipr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/clipr_0.8.0.tar.gz'
-Content type 'application/x-gzip' length 21898 bytes (21 KB)
-==================================================
-downloaded 21 KB
-
-foundpkgs: clipr, /tmp/Rtmprgd9jS/downloaded_packages/clipr_0.8.0.tar.gz
-files: /tmp/Rtmprgd9jS/downloaded_packages/clipr_0.8.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmprgd9jS/downloaded_packages/clipr_0.8.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmprgd9jS/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 34 / 238: colorspace
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/colorspace_2.0-3.tar.gz'
-Content type 'application/x-gzip' length 2199185 bytes (2.1 MB)
-==================================================
-downloaded 2.1 MB
-
-foundpkgs: colorspace, /tmp/Rtmp5Aauie/downloaded_packages/colorspace_2.0-3.tar.gz
-files: /tmp/Rtmp5Aauie/downloaded_packages/colorspace_2.0-3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp5Aauie/downloaded_packages/colorspace_2.0-3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp5Aauie/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 35 / 238: commonmark
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/commonmark_1.8.0.tar.gz'
-Content type 'application/x-gzip' length 139478 bytes (136 KB)
-==================================================
-downloaded 136 KB
-
-foundpkgs: commonmark, /tmp/Rtmp4XOKIh/downloaded_packages/commonmark_1.8.0.tar.gz
-files: /tmp/Rtmp4XOKIh/downloaded_packages/commonmark_1.8.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp4XOKIh/downloaded_packages/commonmark_1.8.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp4XOKIh/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 36 / 238: conquer
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies â€˜matrixStatsâ€™, â€˜RcppArmadilloâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/matrixStats_0.61.0.tar.gz'
-Content type 'application/x-gzip' length 201077 bytes (196 KB)
-==================================================
-downloaded 196 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/RcppArmadillo_0.10.8.1.0.tar.gz'
-Content type 'application/x-gzip' length 1364404 bytes (1.3 MB)
-==================================================
-downloaded 1.3 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/conquer_1.2.2.tar.gz'
-Content type 'application/x-gzip' length 26487 bytes (25 KB)
-==================================================
-downloaded 25 KB
-
-foundpkgs: matrixStats, RcppArmadillo, conquer, /tmp/Rtmp4yNAGw/downloaded_packages/matrixStats_0.61.0.tar.gz, /tmp/Rtmp4yNAGw/downloaded_packages/RcppArmadillo_0.10.8.1.0.tar.gz, /tmp/Rtmp4yNAGw/downloaded_packages/conquer_1.2.2.tar.gz
-files: /tmp/Rtmp4yNAGw/downloaded_packages/matrixStats_0.61.0.tar.gz, 
-	/tmp/Rtmp4yNAGw/downloaded_packages/RcppArmadillo_0.10.8.1.0.tar.gz, 
-	/tmp/Rtmp4yNAGw/downloaded_packages/conquer_1.2.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp4yNAGw/downloaded_packages/matrixStats_0.61.0.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp4yNAGw/downloaded_packages/RcppArmadillo_0.10.8.1.0.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp4yNAGw/downloaded_packages/conquer_1.2.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp4yNAGw/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 37 / 238: corrplot
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/corrplot_0.92.tar.gz'
-Content type 'application/x-gzip' length 3765850 bytes (3.6 MB)
-==================================================
-downloaded 3.6 MB
-
-foundpkgs: corrplot, /tmp/RtmpS8IsYN/downloaded_packages/corrplot_0.92.tar.gz
-files: /tmp/RtmpS8IsYN/downloaded_packages/corrplot_0.92.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpS8IsYN/downloaded_packages/corrplot_0.92.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpS8IsYN/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 38 / 238: covr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies â€˜lazyevalâ€™, â€˜rexâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/lazyeval_0.2.2.tar.gz'
-Content type 'application/x-gzip' length 83482 bytes (81 KB)
-==================================================
-downloaded 81 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/rex_1.2.1.tar.gz'
-Content type 'application/x-gzip' length 93583 bytes (91 KB)
-==================================================
-downloaded 91 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/covr_3.5.1.tar.gz'
-Content type 'application/x-gzip' length 146686 bytes (143 KB)
-==================================================
-downloaded 143 KB
-
-foundpkgs: lazyeval, rex, covr, /tmp/Rtmpsz8wDW/downloaded_packages/lazyeval_0.2.2.tar.gz, /tmp/Rtmpsz8wDW/downloaded_packages/rex_1.2.1.tar.gz, /tmp/Rtmpsz8wDW/downloaded_packages/covr_3.5.1.tar.gz
-files: /tmp/Rtmpsz8wDW/downloaded_packages/lazyeval_0.2.2.tar.gz, 
-	/tmp/Rtmpsz8wDW/downloaded_packages/rex_1.2.1.tar.gz, 
-	/tmp/Rtmpsz8wDW/downloaded_packages/covr_3.5.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpsz8wDW/downloaded_packages/lazyeval_0.2.2.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpsz8wDW/downloaded_packages/rex_1.2.1.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpsz8wDW/downloaded_packages/covr_3.5.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpsz8wDW/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 39 / 238: cpp11
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/cpp11_0.4.2.tar.gz'
-Content type 'application/x-gzip' length 317708 bytes (310 KB)
-==================================================
-downloaded 310 KB
-
-foundpkgs: cpp11, /tmp/RtmpsVyaj6/downloaded_packages/cpp11_0.4.2.tar.gz
-files: /tmp/RtmpsVyaj6/downloaded_packages/cpp11_0.4.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsVyaj6/downloaded_packages/cpp11_0.4.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpsVyaj6/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 40 / 238: crayon
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/crayon_1.5.0.tar.gz'
-Content type 'application/x-gzip' length 40099 bytes (39 KB)
-==================================================
-downloaded 39 KB
-
-foundpkgs: crayon, /tmp/RtmpcthBSr/downloaded_packages/crayon_1.5.0.tar.gz
-files: /tmp/RtmpcthBSr/downloaded_packages/crayon_1.5.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpcthBSr/downloaded_packages/crayon_1.5.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpcthBSr/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 41 / 238: credentials
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/credentials_1.3.2.tar.gz'
-Content type 'application/x-gzip' length 230070 bytes (224 KB)
-==================================================
-downloaded 224 KB
-
-foundpkgs: credentials, /tmp/RtmptCDvyH/downloaded_packages/credentials_1.3.2.tar.gz
-files: /tmp/RtmptCDvyH/downloaded_packages/credentials_1.3.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmptCDvyH/downloaded_packages/credentials_1.3.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmptCDvyH/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 42 / 238: crosstalk
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependency â€˜htmltoolsâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/htmltools_0.5.2.tar.gz'
-Content type 'application/x-gzip' length 124510 bytes (121 KB)
-==================================================
-downloaded 121 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/crosstalk_1.2.0.tar.gz'
-Content type 'application/x-gzip' length 296495 bytes (289 KB)
-==================================================
-downloaded 289 KB
-
-foundpkgs: htmltools, crosstalk, /tmp/RtmpBxb3xW/downloaded_packages/htmltools_0.5.2.tar.gz, /tmp/RtmpBxb3xW/downloaded_packages/crosstalk_1.2.0.tar.gz
-files: /tmp/RtmpBxb3xW/downloaded_packages/htmltools_0.5.2.tar.gz, 
-	/tmp/RtmpBxb3xW/downloaded_packages/crosstalk_1.2.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpBxb3xW/downloaded_packages/htmltools_0.5.2.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpBxb3xW/downloaded_packages/crosstalk_1.2.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpBxb3xW/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 43 / 238: curl
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/curl_4.3.2.tar.gz'
-Content type 'application/x-gzip' length 793345 bytes (774 KB)
-==================================================
-downloaded 774 KB
-
-foundpkgs: curl, /tmp/RtmpK4xRre/downloaded_packages/curl_4.3.2.tar.gz
-files: /tmp/RtmpK4xRre/downloaded_packages/curl_4.3.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpK4xRre/downloaded_packages/curl_4.3.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpK4xRre/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 44 / 238: data.table
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/data.table_1.14.2.tar.gz'
-Content type 'application/x-gzip' length 5301817 bytes (5.1 MB)
-==================================================
-downloaded 5.1 MB
-
-foundpkgs: data.table, /tmp/RtmpoL4hIz/downloaded_packages/data.table_1.14.2.tar.gz
-files: /tmp/RtmpoL4hIz/downloaded_packages/data.table_1.14.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpoL4hIz/downloaded_packages/data.table_1.14.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpoL4hIz/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 45 / 238: DBI
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/DBI_1.1.2.tar.gz'
-Content type 'application/x-gzip' length 706518 bytes (689 KB)
-==================================================
-downloaded 689 KB
-
-foundpkgs: DBI, /tmp/RtmpHOT6SP/downloaded_packages/DBI_1.1.2.tar.gz
-files: /tmp/RtmpHOT6SP/downloaded_packages/DBI_1.1.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpHOT6SP/downloaded_packages/DBI_1.1.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpHOT6SP/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 46 / 238: dbplyr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/dbplyr_2.1.1.tar.gz'
-Content type 'application/x-gzip' length 581845 bytes (568 KB)
-==================================================
-downloaded 568 KB
-
-foundpkgs: dbplyr, /tmp/RtmpXm6RbY/downloaded_packages/dbplyr_2.1.1.tar.gz
-files: /tmp/RtmpXm6RbY/downloaded_packages/dbplyr_2.1.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXm6RbY/downloaded_packages/dbplyr_2.1.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpXm6RbY/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 47 / 238: DelayedArray
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜DelayedArrayâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 48 / 238: desc
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/desc_1.4.1.tar.gz'
-Content type 'application/x-gzip' length 80670 bytes (78 KB)
-==================================================
-downloaded 78 KB
-
-foundpkgs: desc, /tmp/RtmphpEQLz/downloaded_packages/desc_1.4.1.tar.gz
-files: /tmp/RtmphpEQLz/downloaded_packages/desc_1.4.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmphpEQLz/downloaded_packages/desc_1.4.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmphpEQLz/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 49 / 238: DESeq2
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜DESeq2â€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 50 / 238: diffobj
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/diffobj_0.3.5.tar.gz'
-Content type 'application/x-gzip' length 479276 bytes (468 KB)
-==================================================
-downloaded 468 KB
-
-foundpkgs: diffobj, /tmp/Rtmp88JT2j/downloaded_packages/diffobj_0.3.5.tar.gz
-files: /tmp/Rtmp88JT2j/downloaded_packages/diffobj_0.3.5.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp88JT2j/downloaded_packages/diffobj_0.3.5.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp88JT2j/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 51 / 238: digest
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/digest_0.6.29.tar.gz'
-Content type 'application/x-gzip' length 162775 bytes (158 KB)
-==================================================
-downloaded 158 KB
-
-foundpkgs: digest, /tmp/RtmplsyFVG/downloaded_packages/digest_0.6.29.tar.gz
-files: /tmp/RtmplsyFVG/downloaded_packages/digest_0.6.29.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmplsyFVG/downloaded_packages/digest_0.6.29.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmplsyFVG/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 52 / 238: DNAcopy
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜DNAcopyâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 53 / 238: dplyr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/dplyr_1.0.8.tar.gz'
-Content type 'application/x-gzip' length 880713 bytes (860 KB)
-==================================================
-downloaded 860 KB
-
-foundpkgs: dplyr, /tmp/RtmpT7FAGo/downloaded_packages/dplyr_1.0.8.tar.gz
-files: /tmp/RtmpT7FAGo/downloaded_packages/dplyr_1.0.8.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpT7FAGo/downloaded_packages/dplyr_1.0.8.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpT7FAGo/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 54 / 238: DT
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies â€˜laterâ€™, â€˜htmlwidgetsâ€™, â€˜jquerylibâ€™, â€˜promisesâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/later_1.3.0.tar.gz'
-Content type 'application/x-gzip' length 63785 bytes (62 KB)
-==================================================
-downloaded 62 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/htmlwidgets_1.5.4.tar.gz'
-Content type 'application/x-gzip' length 956850 bytes (934 KB)
-==================================================
-downloaded 934 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/jquerylib_0.1.4.tar.gz'
-Content type 'application/x-gzip' length 520207 bytes (508 KB)
-==================================================
-downloaded 508 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/promises_1.2.0.1.tar.gz'
-Content type 'application/x-gzip' length 3120504 bytes (3.0 MB)
-==================================================
-downloaded 3.0 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/DT_0.21.tar.gz'
-Content type 'application/x-gzip' length 1514997 bytes (1.4 MB)
-==================================================
-downloaded 1.4 MB
-
-foundpkgs: later, htmlwidgets, jquerylib, promises, DT, /tmp/Rtmpc8LThN/downloaded_packages/later_1.3.0.tar.gz, /tmp/Rtmpc8LThN/downloaded_packages/htmlwidgets_1.5.4.tar.gz, /tmp/Rtmpc8LThN/downloaded_packages/jquerylib_0.1.4.tar.gz, /tmp/Rtmpc8LThN/downloaded_packages/promises_1.2.0.1.tar.gz, /tmp/Rtmpc8LThN/downloaded_packages/DT_0.21.tar.gz
-files: /tmp/Rtmpc8LThN/downloaded_packages/later_1.3.0.tar.gz, 
-	/tmp/Rtmpc8LThN/downloaded_packages/htmlwidgets_1.5.4.tar.gz, 
-	/tmp/Rtmpc8LThN/downloaded_packages/jquerylib_0.1.4.tar.gz, 
-	/tmp/Rtmpc8LThN/downloaded_packages/promises_1.2.0.1.tar.gz, 
-	/tmp/Rtmpc8LThN/downloaded_packages/DT_0.21.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpc8LThN/downloaded_packages/later_1.3.0.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpc8LThN/downloaded_packages/htmlwidgets_1.5.4.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpc8LThN/downloaded_packages/jquerylib_0.1.4.tar.gz''
-4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpc8LThN/downloaded_packages/promises_1.2.0.1.tar.gz''
-5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpc8LThN/downloaded_packages/DT_0.21.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpc8LThN/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 55 / 238: dtplyr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/dtplyr_1.2.1.tar.gz'
-Content type 'application/x-gzip' length 288369 bytes (281 KB)
-==================================================
-downloaded 281 KB
-
-foundpkgs: dtplyr, /tmp/RtmpWumnSD/downloaded_packages/dtplyr_1.2.1.tar.gz
-files: /tmp/RtmpWumnSD/downloaded_packages/dtplyr_1.2.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpWumnSD/downloaded_packages/dtplyr_1.2.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpWumnSD/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 56 / 238: edgeR
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜edgeRâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 57 / 238: ellipsis
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/ellipsis_0.3.2.tar.gz'
-Content type 'application/x-gzip' length 8066 bytes
-==================================================
-downloaded 8066 bytes
-
-foundpkgs: ellipsis, /tmp/Rtmp3h7BDh/downloaded_packages/ellipsis_0.3.2.tar.gz
-files: /tmp/Rtmp3h7BDh/downloaded_packages/ellipsis_0.3.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp3h7BDh/downloaded_packages/ellipsis_0.3.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp3h7BDh/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 58 / 238: emmeans
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies â€˜estimabilityâ€™, â€˜mvtnormâ€™, â€˜xtableâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/estimability_1.3.tar.gz'
-Content type 'application/x-gzip' length 9481 bytes
-==================================================
-downloaded 9481 bytes
-
-trying URL 'https://cran.irsn.fr/src/contrib/mvtnorm_1.1-3.tar.gz'
-Content type 'application/x-gzip' length 166421 bytes (162 KB)
-==================================================
-downloaded 162 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/xtable_1.8-4.tar.gz'
-Content type 'application/x-gzip' length 564589 bytes (551 KB)
-==================================================
-downloaded 551 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/emmeans_1.7.2.tar.gz'
-Content type 'application/x-gzip' length 1363620 bytes (1.3 MB)
-==================================================
-downloaded 1.3 MB
-
-foundpkgs: estimability, mvtnorm, xtable, emmeans, /tmp/Rtmp4CZwNy/downloaded_packages/estimability_1.3.tar.gz, /tmp/Rtmp4CZwNy/downloaded_packages/mvtnorm_1.1-3.tar.gz, /tmp/Rtmp4CZwNy/downloaded_packages/xtable_1.8-4.tar.gz, /tmp/Rtmp4CZwNy/downloaded_packages/emmeans_1.7.2.tar.gz
-files: /tmp/Rtmp4CZwNy/downloaded_packages/estimability_1.3.tar.gz, 
-	/tmp/Rtmp4CZwNy/downloaded_packages/mvtnorm_1.1-3.tar.gz, 
-	/tmp/Rtmp4CZwNy/downloaded_packages/xtable_1.8-4.tar.gz, 
-	/tmp/Rtmp4CZwNy/downloaded_packages/emmeans_1.7.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp4CZwNy/downloaded_packages/estimability_1.3.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp4CZwNy/downloaded_packages/mvtnorm_1.1-3.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp4CZwNy/downloaded_packages/xtable_1.8-4.tar.gz''
-4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp4CZwNy/downloaded_packages/emmeans_1.7.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp4CZwNy/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 59 / 238: estimability
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/estimability_1.3.tar.gz'
-Content type 'application/x-gzip' length 9481 bytes
-==================================================
-downloaded 9481 bytes
-
-foundpkgs: estimability, /tmp/RtmpXqWG1W/downloaded_packages/estimability_1.3.tar.gz
-files: /tmp/RtmpXqWG1W/downloaded_packages/estimability_1.3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXqWG1W/downloaded_packages/estimability_1.3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpXqWG1W/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 60 / 238: evaluate
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/evaluate_0.15.tar.gz'
-Content type 'application/x-gzip' length 25617 bytes (25 KB)
-==================================================
-downloaded 25 KB
-
-foundpkgs: evaluate, /tmp/Rtmpeay8Kf/downloaded_packages/evaluate_0.15.tar.gz
-files: /tmp/Rtmpeay8Kf/downloaded_packages/evaluate_0.15.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpeay8Kf/downloaded_packages/evaluate_0.15.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpeay8Kf/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 61 / 238: ExPosition
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependency â€˜prettyGraphsâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/prettyGraphs_2.1.6.tar.gz'
-Content type 'application/x-gzip' length 16893 bytes (16 KB)
-==================================================
-downloaded 16 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/ExPosition_2.8.23.tar.gz'
-Content type 'application/x-gzip' length 63329 bytes (61 KB)
-==================================================
-downloaded 61 KB
-
-foundpkgs: prettyGraphs, ExPosition, /tmp/RtmpyrtRGx/downloaded_packages/prettyGraphs_2.1.6.tar.gz, /tmp/RtmpyrtRGx/downloaded_packages/ExPosition_2.8.23.tar.gz
-files: /tmp/RtmpyrtRGx/downloaded_packages/prettyGraphs_2.1.6.tar.gz, 
-	/tmp/RtmpyrtRGx/downloaded_packages/ExPosition_2.8.23.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpyrtRGx/downloaded_packages/prettyGraphs_2.1.6.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpyrtRGx/downloaded_packages/ExPosition_2.8.23.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpyrtRGx/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 62 / 238: fansi
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/fansi_1.0.2.tar.gz'
-Content type 'application/x-gzip' length 480902 bytes (469 KB)
-==================================================
-downloaded 469 KB
-
-foundpkgs: fansi, /tmp/RtmpLnGmdD/downloaded_packages/fansi_1.0.2.tar.gz
-files: /tmp/RtmpLnGmdD/downloaded_packages/fansi_1.0.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLnGmdD/downloaded_packages/fansi_1.0.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpLnGmdD/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 63 / 238: farver
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/farver_2.1.0.tar.gz'
-Content type 'application/x-gzip' length 1281864 bytes (1.2 MB)
-==================================================
-downloaded 1.2 MB
-
-foundpkgs: farver, /tmp/RtmpJrP0KD/downloaded_packages/farver_2.1.0.tar.gz
-files: /tmp/RtmpJrP0KD/downloaded_packages/farver_2.1.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpJrP0KD/downloaded_packages/farver_2.1.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpJrP0KD/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 64 / 238: fastmap
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/fastmap_1.1.0.tar.gz'
-Content type 'application/x-gzip' length 44277 bytes (43 KB)
-==================================================
-downloaded 43 KB
-
-foundpkgs: fastmap, /tmp/RtmpFROiVA/downloaded_packages/fastmap_1.1.0.tar.gz
-files: /tmp/RtmpFROiVA/downloaded_packages/fastmap_1.1.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpFROiVA/downloaded_packages/fastmap_1.1.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpFROiVA/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 65 / 238: forcats
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/forcats_0.5.1.tar.gz'
-Content type 'application/x-gzip' length 258301 bytes (252 KB)
-==================================================
-downloaded 252 KB
-
-foundpkgs: forcats, /tmp/RtmpLRcwpJ/downloaded_packages/forcats_0.5.1.tar.gz
-files: /tmp/RtmpLRcwpJ/downloaded_packages/forcats_0.5.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLRcwpJ/downloaded_packages/forcats_0.5.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpLRcwpJ/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 66 / 238: formatR
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/formatR_1.11.tar.gz'
-Content type 'application/x-gzip' length 95158 bytes (92 KB)
-==================================================
-downloaded 92 KB
-
-foundpkgs: formatR, /tmp/Rtmpr35Ug6/downloaded_packages/formatR_1.11.tar.gz
-files: /tmp/Rtmpr35Ug6/downloaded_packages/formatR_1.11.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpr35Ug6/downloaded_packages/formatR_1.11.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpr35Ug6/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 67 / 238: fs
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/fs_1.5.2.tar.gz'
-Content type 'application/x-gzip' length 793627 bytes (775 KB)
-==================================================
-downloaded 775 KB
-
-foundpkgs: fs, /tmp/RtmpurHwge/downloaded_packages/fs_1.5.2.tar.gz
-files: /tmp/RtmpurHwge/downloaded_packages/fs_1.5.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpurHwge/downloaded_packages/fs_1.5.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpurHwge/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 68 / 238: futile.logger
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies â€˜lambda.râ€™, â€˜futile.optionsâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/lambda.r_1.2.4.tar.gz'
-Content type 'application/x-gzip' length 25666 bytes (25 KB)
-==================================================
-downloaded 25 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/futile.options_1.0.1.tar.gz'
-Content type 'application/x-gzip' length 3919 bytes
-==================================================
-downloaded 3919 bytes
-
-trying URL 'https://cran.irsn.fr/src/contrib/futile.logger_1.4.3.tar.gz'
-Content type 'application/x-gzip' length 17456 bytes (17 KB)
-==================================================
-downloaded 17 KB
-
-foundpkgs: lambda.r, futile.options, futile.logger, /tmp/RtmpXJ4zeh/downloaded_packages/lambda.r_1.2.4.tar.gz, /tmp/RtmpXJ4zeh/downloaded_packages/futile.options_1.0.1.tar.gz, /tmp/RtmpXJ4zeh/downloaded_packages/futile.logger_1.4.3.tar.gz
-files: /tmp/RtmpXJ4zeh/downloaded_packages/lambda.r_1.2.4.tar.gz, 
-	/tmp/RtmpXJ4zeh/downloaded_packages/futile.options_1.0.1.tar.gz, 
-	/tmp/RtmpXJ4zeh/downloaded_packages/futile.logger_1.4.3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXJ4zeh/downloaded_packages/lambda.r_1.2.4.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXJ4zeh/downloaded_packages/futile.options_1.0.1.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXJ4zeh/downloaded_packages/futile.logger_1.4.3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpXJ4zeh/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 69 / 238: futile.options
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/futile.options_1.0.1.tar.gz'
-Content type 'application/x-gzip' length 3919 bytes
-==================================================
-downloaded 3919 bytes
-
-foundpkgs: futile.options, /tmp/RtmpXi4AYf/downloaded_packages/futile.options_1.0.1.tar.gz
-files: /tmp/RtmpXi4AYf/downloaded_packages/futile.options_1.0.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXi4AYf/downloaded_packages/futile.options_1.0.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpXi4AYf/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 70 / 238: future
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies â€˜globalsâ€™, â€˜listenvâ€™, â€˜parallellyâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/globals_0.14.0.tar.gz'
-Content type 'application/x-gzip' length 30786 bytes (30 KB)
-==================================================
-downloaded 30 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/listenv_0.8.0.tar.gz'
-Content type 'application/x-gzip' length 36762 bytes (35 KB)
-==================================================
-downloaded 35 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/parallelly_1.30.0.tar.gz'
-Content type 'application/x-gzip' length 115888 bytes (113 KB)
-==================================================
-downloaded 113 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/future_1.24.0.tar.gz'
-Content type 'application/x-gzip' length 354681 bytes (346 KB)
-==================================================
-downloaded 346 KB
-
-foundpkgs: globals, listenv, parallelly, future, /tmp/RtmpdDqaKB/downloaded_packages/globals_0.14.0.tar.gz, /tmp/RtmpdDqaKB/downloaded_packages/listenv_0.8.0.tar.gz, /tmp/RtmpdDqaKB/downloaded_packages/parallelly_1.30.0.tar.gz, /tmp/RtmpdDqaKB/downloaded_packages/future_1.24.0.tar.gz
-files: /tmp/RtmpdDqaKB/downloaded_packages/globals_0.14.0.tar.gz, 
-	/tmp/RtmpdDqaKB/downloaded_packages/listenv_0.8.0.tar.gz, 
-	/tmp/RtmpdDqaKB/downloaded_packages/parallelly_1.30.0.tar.gz, 
-	/tmp/RtmpdDqaKB/downloaded_packages/future_1.24.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdDqaKB/downloaded_packages/globals_0.14.0.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdDqaKB/downloaded_packages/listenv_0.8.0.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdDqaKB/downloaded_packages/parallelly_1.30.0.tar.gz''
-4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdDqaKB/downloaded_packages/future_1.24.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpdDqaKB/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 71 / 238: future.apply
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/future.apply_1.8.1.tar.gz'
-Content type 'application/x-gzip' length 63654 bytes (62 KB)
-==================================================
-downloaded 62 KB
-
-foundpkgs: future.apply, /tmp/Rtmpng1N2w/downloaded_packages/future.apply_1.8.1.tar.gz
-files: /tmp/Rtmpng1N2w/downloaded_packages/future.apply_1.8.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpng1N2w/downloaded_packages/future.apply_1.8.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpng1N2w/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 72 / 238: gargle
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/gargle_1.2.0.tar.gz'
-Content type 'application/x-gzip' length 313418 bytes (306 KB)
-==================================================
-downloaded 306 KB
-
-foundpkgs: gargle, /tmp/Rtmpa230yD/downloaded_packages/gargle_1.2.0.tar.gz
-files: /tmp/Rtmpa230yD/downloaded_packages/gargle_1.2.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpa230yD/downloaded_packages/gargle_1.2.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpa230yD/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 73 / 238: genefilter
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜genefilterâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 74 / 238: geneplotter
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜geneplotterâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 75 / 238: generics
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/generics_0.1.2.tar.gz'
-Content type 'application/x-gzip' length 123325 bytes (120 KB)
-==================================================
-downloaded 120 KB
-
-foundpkgs: generics, /tmp/Rtmp1qTUDt/downloaded_packages/generics_0.1.2.tar.gz
-files: /tmp/Rtmp1qTUDt/downloaded_packages/generics_0.1.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1qTUDt/downloaded_packages/generics_0.1.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp1qTUDt/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 76 / 238: GenomeInfoDb
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜GenomeInfoDbâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 77 / 238: GenomeInfoDbData
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜GenomeInfoDbDataâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 78 / 238: GenomicRanges
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜GenomicRangesâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 79 / 238: gert
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/gert_1.5.0.tar.gz'
-Content type 'application/x-gzip' length 66958 bytes (65 KB)
-==================================================
-downloaded 65 KB
-
-foundpkgs: gert, /tmp/RtmpHz45Ik/downloaded_packages/gert_1.5.0.tar.gz
-files: /tmp/RtmpHz45Ik/downloaded_packages/gert_1.5.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpHz45Ik/downloaded_packages/gert_1.5.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpHz45Ik/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 80 / 238: GGally
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies â€˜hmsâ€™, â€˜plyrâ€™, â€˜progressâ€™, â€˜reshapeâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/hms_1.1.1.tar.gz'
-Content type 'application/x-gzip' length 43117 bytes (42 KB)
-==================================================
-downloaded 42 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/plyr_1.8.6.tar.gz'
-Content type 'application/x-gzip' length 401191 bytes (391 KB)
-==================================================
-downloaded 391 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/progress_1.2.2.tar.gz'
-Content type 'application/x-gzip' length 29506 bytes (28 KB)
-==================================================
-downloaded 28 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/reshape_0.8.8.tar.gz'
-Content type 'application/x-gzip' length 42558 bytes (41 KB)
-==================================================
-downloaded 41 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/GGally_2.1.2.tar.gz'
-Content type 'application/x-gzip' length 1432522 bytes (1.4 MB)
-==================================================
-downloaded 1.4 MB
-
-foundpkgs: hms, plyr, progress, reshape, GGally, /tmp/Rtmp7rr06o/downloaded_packages/hms_1.1.1.tar.gz, /tmp/Rtmp7rr06o/downloaded_packages/plyr_1.8.6.tar.gz, /tmp/Rtmp7rr06o/downloaded_packages/progress_1.2.2.tar.gz, /tmp/Rtmp7rr06o/downloaded_packages/reshape_0.8.8.tar.gz, /tmp/Rtmp7rr06o/downloaded_packages/GGally_2.1.2.tar.gz
-files: /tmp/Rtmp7rr06o/downloaded_packages/hms_1.1.1.tar.gz, 
-	/tmp/Rtmp7rr06o/downloaded_packages/plyr_1.8.6.tar.gz, 
-	/tmp/Rtmp7rr06o/downloaded_packages/progress_1.2.2.tar.gz, 
-	/tmp/Rtmp7rr06o/downloaded_packages/reshape_0.8.8.tar.gz, 
-	/tmp/Rtmp7rr06o/downloaded_packages/GGally_2.1.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7rr06o/downloaded_packages/hms_1.1.1.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7rr06o/downloaded_packages/plyr_1.8.6.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7rr06o/downloaded_packages/progress_1.2.2.tar.gz''
-4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7rr06o/downloaded_packages/reshape_0.8.8.tar.gz''
-5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7rr06o/downloaded_packages/GGally_2.1.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp7rr06o/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 81 / 238: ggdendro
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/ggdendro_0.1.23.tar.gz'
-Content type 'application/x-gzip' length 101832 bytes (99 KB)
-==================================================
-downloaded 99 KB
-
-foundpkgs: ggdendro, /tmp/Rtmp9RXCUX/downloaded_packages/ggdendro_0.1.23.tar.gz
-files: /tmp/Rtmp9RXCUX/downloaded_packages/ggdendro_0.1.23.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp9RXCUX/downloaded_packages/ggdendro_0.1.23.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp9RXCUX/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 82 / 238: ggrepel
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/ggrepel_0.9.1.tar.gz'
-Content type 'application/x-gzip' length 271371 bytes (265 KB)
-==================================================
-downloaded 265 KB
-
-foundpkgs: ggrepel, /tmp/RtmpP3wayk/downloaded_packages/ggrepel_0.9.1.tar.gz
-files: /tmp/RtmpP3wayk/downloaded_packages/ggrepel_0.9.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpP3wayk/downloaded_packages/ggrepel_0.9.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpP3wayk/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 83 / 238: ggseqlogo
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/ggseqlogo_0.1.tar.gz'
-Content type 'application/x-gzip' length 738907 bytes (721 KB)
-==================================================
-downloaded 721 KB
-
-foundpkgs: ggseqlogo, /tmp/RtmpptfZEw/downloaded_packages/ggseqlogo_0.1.tar.gz
-files: /tmp/RtmpptfZEw/downloaded_packages/ggseqlogo_0.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpptfZEw/downloaded_packages/ggseqlogo_0.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpptfZEw/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 84 / 238: gh
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/gh_1.3.0.tar.gz'
-Content type 'application/x-gzip' length 45619 bytes (44 KB)
-==================================================
-downloaded 44 KB
-
-foundpkgs: gh, /tmp/RtmpmE3jKT/downloaded_packages/gh_1.3.0.tar.gz
-files: /tmp/RtmpmE3jKT/downloaded_packages/gh_1.3.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmE3jKT/downloaded_packages/gh_1.3.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpmE3jKT/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 85 / 238: gitcreds
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/gitcreds_0.1.1.tar.gz'
-Content type 'application/x-gzip' length 61913 bytes (60 KB)
-==================================================
-downloaded 60 KB
-
-foundpkgs: gitcreds, /tmp/RtmpI1L3ws/downloaded_packages/gitcreds_0.1.1.tar.gz
-files: /tmp/RtmpI1L3ws/downloaded_packages/gitcreds_0.1.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpI1L3ws/downloaded_packages/gitcreds_0.1.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpI1L3ws/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 86 / 238: githubinstall
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependency â€˜mockeryâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/mockery_0.4.3.tar.gz'
-Content type 'application/x-gzip' length 20854 bytes (20 KB)
-==================================================
-downloaded 20 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/githubinstall_0.2.2.tar.gz'
-Content type 'application/x-gzip' length 27939 bytes (27 KB)
-==================================================
-downloaded 27 KB
-
-foundpkgs: mockery, githubinstall, /tmp/Rtmpq9NUPI/downloaded_packages/mockery_0.4.3.tar.gz, /tmp/Rtmpq9NUPI/downloaded_packages/githubinstall_0.2.2.tar.gz
-files: /tmp/Rtmpq9NUPI/downloaded_packages/mockery_0.4.3.tar.gz, 
-	/tmp/Rtmpq9NUPI/downloaded_packages/githubinstall_0.2.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpq9NUPI/downloaded_packages/mockery_0.4.3.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpq9NUPI/downloaded_packages/githubinstall_0.2.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpq9NUPI/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 87 / 238: globals
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/globals_0.14.0.tar.gz'
-Content type 'application/x-gzip' length 30786 bytes (30 KB)
-==================================================
-downloaded 30 KB
-
-foundpkgs: globals, /tmp/RtmpaVjOke/downloaded_packages/globals_0.14.0.tar.gz
-files: /tmp/RtmpaVjOke/downloaded_packages/globals_0.14.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpaVjOke/downloaded_packages/globals_0.14.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpaVjOke/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 88 / 238: glue
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/glue_1.6.2.tar.gz'
-Content type 'application/x-gzip' length 106510 bytes (104 KB)
-==================================================
-downloaded 104 KB
-
-foundpkgs: glue, /tmp/RtmpFkHzgx/downloaded_packages/glue_1.6.2.tar.gz
-files: /tmp/RtmpFkHzgx/downloaded_packages/glue_1.6.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpFkHzgx/downloaded_packages/glue_1.6.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpFkHzgx/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 89 / 238: googledrive
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependency â€˜uuidâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/uuid_1.0-3.tar.gz'
-Content type 'application/x-gzip' length 72003 bytes (70 KB)
-==================================================
-downloaded 70 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/googledrive_2.0.0.tar.gz'
-Content type 'application/x-gzip' length 1593656 bytes (1.5 MB)
-==================================================
-downloaded 1.5 MB
-
-foundpkgs: uuid, googledrive, /tmp/RtmpEcqqcU/downloaded_packages/uuid_1.0-3.tar.gz, /tmp/RtmpEcqqcU/downloaded_packages/googledrive_2.0.0.tar.gz
-files: /tmp/RtmpEcqqcU/downloaded_packages/uuid_1.0-3.tar.gz, 
-	/tmp/RtmpEcqqcU/downloaded_packages/googledrive_2.0.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpEcqqcU/downloaded_packages/uuid_1.0-3.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpEcqqcU/downloaded_packages/googledrive_2.0.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpEcqqcU/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 90 / 238: googlesheets4
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependency â€˜idsâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/ids_1.0.1.tar.gz'
-Content type 'application/x-gzip' length 91213 bytes (89 KB)
-==================================================
-downloaded 89 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/googlesheets4_1.0.0.tar.gz'
-Content type 'application/x-gzip' length 222038 bytes (216 KB)
-==================================================
-downloaded 216 KB
-
-foundpkgs: ids, googlesheets4, /tmp/RtmprgHbeM/downloaded_packages/ids_1.0.1.tar.gz, /tmp/RtmprgHbeM/downloaded_packages/googlesheets4_1.0.0.tar.gz
-files: /tmp/RtmprgHbeM/downloaded_packages/ids_1.0.1.tar.gz, 
-	/tmp/RtmprgHbeM/downloaded_packages/googlesheets4_1.0.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmprgHbeM/downloaded_packages/ids_1.0.1.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmprgHbeM/downloaded_packages/googlesheets4_1.0.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmprgHbeM/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 91 / 238: gplots
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependency â€˜gtoolsâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/gtools_3.9.2.tar.gz'
-Content type 'application/x-gzip' length 240402 bytes (234 KB)
-==================================================
-downloaded 234 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/gplots_3.1.1.tar.gz'
-Content type 'application/x-gzip' length 520248 bytes (508 KB)
-==================================================
-downloaded 508 KB
-
-foundpkgs: gtools, gplots, /tmp/RtmpKkVIX8/downloaded_packages/gtools_3.9.2.tar.gz, /tmp/RtmpKkVIX8/downloaded_packages/gplots_3.1.1.tar.gz
-files: /tmp/RtmpKkVIX8/downloaded_packages/gtools_3.9.2.tar.gz, 
-	/tmp/RtmpKkVIX8/downloaded_packages/gplots_3.1.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpKkVIX8/downloaded_packages/gtools_3.9.2.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpKkVIX8/downloaded_packages/gplots_3.1.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpKkVIX8/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 92 / 238: gridExtra
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/gridExtra_2.3.tar.gz'
-Content type 'application/x-gzip' length 1062844 bytes (1.0 MB)
-==================================================
-downloaded 1.0 MB
-
-foundpkgs: gridExtra, /tmp/RtmphWaore/downloaded_packages/gridExtra_2.3.tar.gz
-files: /tmp/RtmphWaore/downloaded_packages/gridExtra_2.3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmphWaore/downloaded_packages/gridExtra_2.3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmphWaore/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 93 / 238: gtable
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/gtable_0.3.0.tar.gz'
-Content type 'application/x-gzip' length 368081 bytes (359 KB)
-==================================================
-downloaded 359 KB
-
-foundpkgs: gtable, /tmp/RtmpA1snho/downloaded_packages/gtable_0.3.0.tar.gz
-files: /tmp/RtmpA1snho/downloaded_packages/gtable_0.3.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpA1snho/downloaded_packages/gtable_0.3.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpA1snho/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 94 / 238: gtools
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/gtools_3.9.2.tar.gz'
-Content type 'application/x-gzip' length 240402 bytes (234 KB)
-==================================================
-downloaded 234 KB
-
-foundpkgs: gtools, /tmp/RtmpFOJ44E/downloaded_packages/gtools_3.9.2.tar.gz
-files: /tmp/RtmpFOJ44E/downloaded_packages/gtools_3.9.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpFOJ44E/downloaded_packages/gtools_3.9.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpFOJ44E/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 95 / 238: haven
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies â€˜vroomâ€™, â€˜tzdbâ€™, â€˜readrâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/vroom_1.5.7.tar.gz'
-Content type 'application/x-gzip' length 727956 bytes (710 KB)
-==================================================
-downloaded 710 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/tzdb_0.2.0.tar.gz'
-Content type 'application/x-gzip' length 563492 bytes (550 KB)
-==================================================
-downloaded 550 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/readr_2.1.2.tar.gz'
-Content type 'application/x-gzip' length 302240 bytes (295 KB)
-==================================================
-downloaded 295 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/haven_2.4.3.tar.gz'
-Content type 'application/x-gzip' length 296805 bytes (289 KB)
-==================================================
-downloaded 289 KB
-
-foundpkgs: vroom, tzdb, readr, haven, /tmp/RtmpQyLu4Z/downloaded_packages/vroom_1.5.7.tar.gz, /tmp/RtmpQyLu4Z/downloaded_packages/tzdb_0.2.0.tar.gz, /tmp/RtmpQyLu4Z/downloaded_packages/readr_2.1.2.tar.gz, /tmp/RtmpQyLu4Z/downloaded_packages/haven_2.4.3.tar.gz
-files: /tmp/RtmpQyLu4Z/downloaded_packages/vroom_1.5.7.tar.gz, 
-	/tmp/RtmpQyLu4Z/downloaded_packages/tzdb_0.2.0.tar.gz, 
-	/tmp/RtmpQyLu4Z/downloaded_packages/readr_2.1.2.tar.gz, 
-	/tmp/RtmpQyLu4Z/downloaded_packages/haven_2.4.3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQyLu4Z/downloaded_packages/tzdb_0.2.0.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQyLu4Z/downloaded_packages/vroom_1.5.7.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQyLu4Z/downloaded_packages/readr_2.1.2.tar.gz''
-4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQyLu4Z/downloaded_packages/haven_2.4.3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpQyLu4Z/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 96 / 238: HiCcompare
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜HiCcompareâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 97 / 238: highr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/highr_0.9.tar.gz'
-Content type 'application/x-gzip' length 15188 bytes (14 KB)
-==================================================
-downloaded 14 KB
-
-foundpkgs: highr, /tmp/RtmpWXetri/downloaded_packages/highr_0.9.tar.gz
-files: /tmp/RtmpWXetri/downloaded_packages/highr_0.9.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpWXetri/downloaded_packages/highr_0.9.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpWXetri/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 98 / 238: hms
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/hms_1.1.1.tar.gz'
-Content type 'application/x-gzip' length 43117 bytes (42 KB)
-==================================================
-downloaded 42 KB
-
-foundpkgs: hms, /tmp/RtmpMc6ZxA/downloaded_packages/hms_1.1.1.tar.gz
-files: /tmp/RtmpMc6ZxA/downloaded_packages/hms_1.1.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpMc6ZxA/downloaded_packages/hms_1.1.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpMc6ZxA/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 99 / 238: htmltools
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/htmltools_0.5.2.tar.gz'
-Content type 'application/x-gzip' length 124510 bytes (121 KB)
-==================================================
-downloaded 121 KB
-
-foundpkgs: htmltools, /tmp/Rtmpy0ZPa5/downloaded_packages/htmltools_0.5.2.tar.gz
-files: /tmp/Rtmpy0ZPa5/downloaded_packages/htmltools_0.5.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpy0ZPa5/downloaded_packages/htmltools_0.5.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpy0ZPa5/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 100 / 238: htmlwidgets
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/htmlwidgets_1.5.4.tar.gz'
-Content type 'application/x-gzip' length 956850 bytes (934 KB)
-==================================================
-downloaded 934 KB
-
-foundpkgs: htmlwidgets, /tmp/RtmpzHlUxn/downloaded_packages/htmlwidgets_1.5.4.tar.gz
-files: /tmp/RtmpzHlUxn/downloaded_packages/htmlwidgets_1.5.4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpzHlUxn/downloaded_packages/htmlwidgets_1.5.4.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpzHlUxn/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 101 / 238: httr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/httr_1.4.2.tar.gz'
-Content type 'application/x-gzip' length 159950 bytes (156 KB)
-==================================================
-downloaded 156 KB
-
-foundpkgs: httr, /tmp/Rtmprgrj1U/downloaded_packages/httr_1.4.2.tar.gz
-files: /tmp/Rtmprgrj1U/downloaded_packages/httr_1.4.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmprgrj1U/downloaded_packages/httr_1.4.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmprgrj1U/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 102 / 238: ids
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/ids_1.0.1.tar.gz'
-Content type 'application/x-gzip' length 91213 bytes (89 KB)
-==================================================
-downloaded 89 KB
-
-foundpkgs: ids, /tmp/RtmpF4J5dd/downloaded_packages/ids_1.0.1.tar.gz
-files: /tmp/RtmpF4J5dd/downloaded_packages/ids_1.0.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpF4J5dd/downloaded_packages/ids_1.0.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpF4J5dd/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 103 / 238: impute
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜imputeâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 104 / 238: ini
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/ini_0.3.1.tar.gz'
-Content type 'application/x-gzip' length 3488 bytes
-==================================================
-downloaded 3488 bytes
-
-foundpkgs: ini, /tmp/RtmpUC3M0H/downloaded_packages/ini_0.3.1.tar.gz
-files: /tmp/RtmpUC3M0H/downloaded_packages/ini_0.3.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpUC3M0H/downloaded_packages/ini_0.3.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpUC3M0H/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 105 / 238: InteractionSet
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜InteractionSetâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 106 / 238: IRanges
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜IRangesâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 107 / 238: isoband
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/isoband_0.2.5.tar.gz'
-Content type 'application/x-gzip' length 1671911 bytes (1.6 MB)
-==================================================
-downloaded 1.6 MB
-
-foundpkgs: isoband, /tmp/RtmpRm7gTs/downloaded_packages/isoband_0.2.5.tar.gz
-files: /tmp/RtmpRm7gTs/downloaded_packages/isoband_0.2.5.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpRm7gTs/downloaded_packages/isoband_0.2.5.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpRm7gTs/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 108 / 238: jpeg
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/jpeg_0.1-9.tar.gz'
-Content type 'application/x-gzip' length 18596 bytes (18 KB)
-==================================================
-downloaded 18 KB
-
-foundpkgs: jpeg, /tmp/Rtmpbs54CV/downloaded_packages/jpeg_0.1-9.tar.gz
-files: /tmp/Rtmpbs54CV/downloaded_packages/jpeg_0.1-9.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpbs54CV/downloaded_packages/jpeg_0.1-9.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpbs54CV/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 109 / 238: jsonlite
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/jsonlite_1.8.0.tar.gz'
-Content type 'application/x-gzip' length 1051625 bytes (1.0 MB)
-==================================================
-downloaded 1.0 MB
-
-foundpkgs: jsonlite, /tmp/Rtmptzwwa4/downloaded_packages/jsonlite_1.8.0.tar.gz
-files: /tmp/Rtmptzwwa4/downloaded_packages/jsonlite_1.8.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmptzwwa4/downloaded_packages/jsonlite_1.8.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmptzwwa4/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 110 / 238: kableExtra
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies â€˜sassâ€™, â€˜selectrâ€™, â€˜bslibâ€™, â€˜tinytexâ€™, â€˜systemfontsâ€™, â€˜rvestâ€™, â€˜rmarkdownâ€™, â€˜webshotâ€™, â€˜svgliteâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/sass_0.4.0.tar.gz'
-Content type 'application/x-gzip' length 3022459 bytes (2.9 MB)
-==================================================
-downloaded 2.9 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/selectr_0.4-2.tar.gz'
-Content type 'application/x-gzip' length 41371 bytes (40 KB)
-==================================================
-downloaded 40 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/bslib_0.3.1.tar.gz'
-Content type 'application/x-gzip' length 4908277 bytes (4.7 MB)
-==================================================
-downloaded 4.7 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/tinytex_0.37.tar.gz'
-Content type 'application/x-gzip' length 31576 bytes (30 KB)
-==================================================
-downloaded 30 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/systemfonts_1.0.4.tar.gz'
-Content type 'application/x-gzip' length 81757 bytes (79 KB)
-==================================================
-downloaded 79 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/rvest_1.0.2.tar.gz'
-Content type 'application/x-gzip' length 94357 bytes (92 KB)
-==================================================
-downloaded 92 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/rmarkdown_2.12.tar.gz'
-Content type 'application/x-gzip' length 3235953 bytes (3.1 MB)
-==================================================
-downloaded 3.1 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/webshot_0.5.2.tar.gz'
-Content type 'application/x-gzip' length 157837 bytes (154 KB)
-==================================================
-downloaded 154 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/svglite_2.1.0.tar.gz'
-Content type 'application/x-gzip' length 125198 bytes (122 KB)
-==================================================
-downloaded 122 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/kableExtra_1.3.4.tar.gz'
-Content type 'application/x-gzip' length 1646490 bytes (1.6 MB)
-==================================================
-downloaded 1.6 MB
-
-foundpkgs: sass, selectr, bslib, tinytex, systemfonts, rvest, rmarkdown, webshot, svglite, kableExtra, /tmp/RtmpLAbLi9/downloaded_packages/sass_0.4.0.tar.gz, /tmp/RtmpLAbLi9/downloaded_packages/selectr_0.4-2.tar.gz, /tmp/RtmpLAbLi9/downloaded_packages/bslib_0.3.1.tar.gz, /tmp/RtmpLAbLi9/downloaded_packages/tinytex_0.37.tar.gz, /tmp/RtmpLAbLi9/downloaded_packages/systemfonts_1.0.4.tar.gz, /tmp/RtmpLAbLi9/downloaded_packages/rvest_1.0.2.tar.gz, /tmp/RtmpLAbLi9/downloaded_packages/rmarkdown_2.12.tar.gz, /tmp/RtmpLAbLi9/downloaded_packages/webshot_0.5.2.tar.gz, /tmp/RtmpLAbLi9/downloaded_packages/svglite_2.1.0.tar.gz, /tmp/RtmpLAbLi9/downloaded_packages/kableExtra_1.3.4.tar.gz
-files: /tmp/RtmpLAbLi9/downloaded_packages/sass_0.4.0.tar.gz, 
-	/tmp/RtmpLAbLi9/downloaded_packages/selectr_0.4-2.tar.gz, 
-	/tmp/RtmpLAbLi9/downloaded_packages/bslib_0.3.1.tar.gz, 
-	/tmp/RtmpLAbLi9/downloaded_packages/tinytex_0.37.tar.gz, 
-	/tmp/RtmpLAbLi9/downloaded_packages/systemfonts_1.0.4.tar.gz, 
-	/tmp/RtmpLAbLi9/downloaded_packages/rvest_1.0.2.tar.gz, 
-	/tmp/RtmpLAbLi9/downloaded_packages/rmarkdown_2.12.tar.gz, 
-	/tmp/RtmpLAbLi9/downloaded_packages/webshot_0.5.2.tar.gz, 
-	/tmp/RtmpLAbLi9/downloaded_packages/svglite_2.1.0.tar.gz, 
-	/tmp/RtmpLAbLi9/downloaded_packages/kableExtra_1.3.4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLAbLi9/downloaded_packages/sass_0.4.0.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLAbLi9/downloaded_packages/selectr_0.4-2.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLAbLi9/downloaded_packages/tinytex_0.37.tar.gz''
-4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLAbLi9/downloaded_packages/systemfonts_1.0.4.tar.gz''
-5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLAbLi9/downloaded_packages/webshot_0.5.2.tar.gz''
-6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLAbLi9/downloaded_packages/bslib_0.3.1.tar.gz''
-7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLAbLi9/downloaded_packages/rvest_1.0.2.tar.gz''
-8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLAbLi9/downloaded_packages/svglite_2.1.0.tar.gz''
-9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLAbLi9/downloaded_packages/rmarkdown_2.12.tar.gz''
-10): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLAbLi9/downloaded_packages/kableExtra_1.3.4.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpLAbLi9/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 111 / 238: knitr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/knitr_1.37.tar.gz'
-Content type 'application/x-gzip' length 895567 bytes (874 KB)
-==================================================
-downloaded 874 KB
-
-foundpkgs: knitr, /tmp/RtmpH1dPzW/downloaded_packages/knitr_1.37.tar.gz
-files: /tmp/RtmpH1dPzW/downloaded_packages/knitr_1.37.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpH1dPzW/downloaded_packages/knitr_1.37.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpH1dPzW/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 112 / 238: labeling
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/labeling_0.4.2.tar.gz'
-Content type 'application/x-gzip' length 10156 bytes
-==================================================
-downloaded 10156 bytes
-
-foundpkgs: labeling, /tmp/RtmpB5MP9g/downloaded_packages/labeling_0.4.2.tar.gz
-files: /tmp/RtmpB5MP9g/downloaded_packages/labeling_0.4.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpB5MP9g/downloaded_packages/labeling_0.4.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpB5MP9g/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 113 / 238: lambda.r
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/lambda.r_1.2.4.tar.gz'
-Content type 'application/x-gzip' length 25666 bytes (25 KB)
-==================================================
-downloaded 25 KB
-
-foundpkgs: lambda.r, /tmp/Rtmpt7jKMx/downloaded_packages/lambda.r_1.2.4.tar.gz
-files: /tmp/Rtmpt7jKMx/downloaded_packages/lambda.r_1.2.4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpt7jKMx/downloaded_packages/lambda.r_1.2.4.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpt7jKMx/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 114 / 238: later
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/later_1.3.0.tar.gz'
-Content type 'application/x-gzip' length 63785 bytes (62 KB)
-==================================================
-downloaded 62 KB
-
-foundpkgs: later, /tmp/Rtmpnc5yOO/downloaded_packages/later_1.3.0.tar.gz
-files: /tmp/Rtmpnc5yOO/downloaded_packages/later_1.3.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpnc5yOO/downloaded_packages/later_1.3.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpnc5yOO/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 115 / 238: lazyeval
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/lazyeval_0.2.2.tar.gz'
-Content type 'application/x-gzip' length 83482 bytes (81 KB)
-==================================================
-downloaded 81 KB
-
-foundpkgs: lazyeval, /tmp/Rtmp3TCyKm/downloaded_packages/lazyeval_0.2.2.tar.gz
-files: /tmp/Rtmp3TCyKm/downloaded_packages/lazyeval_0.2.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp3TCyKm/downloaded_packages/lazyeval_0.2.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp3TCyKm/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 116 / 238: lemon
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/lemon_0.4.5.tar.gz'
-Content type 'application/x-gzip' length 580086 bytes (566 KB)
-==================================================
-downloaded 566 KB
-
-foundpkgs: lemon, /tmp/Rtmp8QuYgq/downloaded_packages/lemon_0.4.5.tar.gz
-files: /tmp/Rtmp8QuYgq/downloaded_packages/lemon_0.4.5.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8QuYgq/downloaded_packages/lemon_0.4.5.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp8QuYgq/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 117 / 238: lifecycle
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/lifecycle_1.0.1.tar.gz'
-Content type 'application/x-gzip' length 99716 bytes (97 KB)
-==================================================
-downloaded 97 KB
-
-foundpkgs: lifecycle, /tmp/Rtmpscq4rO/downloaded_packages/lifecycle_1.0.1.tar.gz
-files: /tmp/Rtmpscq4rO/downloaded_packages/lifecycle_1.0.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpscq4rO/downloaded_packages/lifecycle_1.0.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpscq4rO/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 118 / 238: limma
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜limmaâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 119 / 238: listenv
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/listenv_0.8.0.tar.gz'
-Content type 'application/x-gzip' length 36762 bytes (35 KB)
-==================================================
-downloaded 35 KB
-
-foundpkgs: listenv, /tmp/Rtmp7A5QPx/downloaded_packages/listenv_0.8.0.tar.gz
-files: /tmp/Rtmp7A5QPx/downloaded_packages/listenv_0.8.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7A5QPx/downloaded_packages/listenv_0.8.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp7A5QPx/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 120 / 238: lme4
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependency â€˜nloptrâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/nloptr_2.0.0.tar.gz'
-Content type 'application/x-gzip' length 2219414 bytes (2.1 MB)
-==================================================
-downloaded 2.1 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/lme4_1.1-28.tar.gz'
-Content type 'application/x-gzip' length 3306775 bytes (3.2 MB)
-==================================================
-downloaded 3.2 MB
-
-foundpkgs: nloptr, lme4, /tmp/RtmpJeyGgM/downloaded_packages/nloptr_2.0.0.tar.gz, /tmp/RtmpJeyGgM/downloaded_packages/lme4_1.1-28.tar.gz
-files: /tmp/RtmpJeyGgM/downloaded_packages/nloptr_2.0.0.tar.gz, 
-	/tmp/RtmpJeyGgM/downloaded_packages/lme4_1.1-28.tar.gz
-Warning in install.packages(pkgs = "lme4", lib = "/usr/local/lib/R/site-library",  :
-  installation of package â€˜nloptrâ€™ had non-zero exit status
-Warning in install.packages(pkgs = "lme4", lib = "/usr/local/lib/R/site-library",  :
-  installation of package â€˜lme4â€™ had non-zero exit status
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpJeyGgM/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 121 / 238: lmerTest
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies â€˜nloptrâ€™, â€˜lme4â€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/nloptr_2.0.0.tar.gz'
-Content type 'application/x-gzip' length 2219414 bytes (2.1 MB)
-==================================================
-downloaded 2.1 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/lme4_1.1-28.tar.gz'
-Content type 'application/x-gzip' length 3306775 bytes (3.2 MB)
-==================================================
-downloaded 3.2 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/lmerTest_3.1-3.tar.gz'
-Content type 'application/x-gzip' length 195633 bytes (191 KB)
-==================================================
-downloaded 191 KB
-
-foundpkgs: nloptr, lme4, lmerTest, /tmp/Rtmp1eLQxZ/downloaded_packages/nloptr_2.0.0.tar.gz, /tmp/Rtmp1eLQxZ/downloaded_packages/lme4_1.1-28.tar.gz, /tmp/Rtmp1eLQxZ/downloaded_packages/lmerTest_3.1-3.tar.gz
-files: /tmp/Rtmp1eLQxZ/downloaded_packages/nloptr_2.0.0.tar.gz, 
-	/tmp/Rtmp1eLQxZ/downloaded_packages/lme4_1.1-28.tar.gz, 
-	/tmp/Rtmp1eLQxZ/downloaded_packages/lmerTest_3.1-3.tar.gz
-Warning in install.packages(pkgs = "lmerTest", lib = "/usr/local/lib/R/site-library",  :
-  installation of package â€˜nloptrâ€™ had non-zero exit status
-Warning in install.packages(pkgs = "lmerTest", lib = "/usr/local/lib/R/site-library",  :
-  installation of package â€˜lme4â€™ had non-zero exit status
-Warning in install.packages(pkgs = "lmerTest", lib = "/usr/local/lib/R/site-library",  :
-  installation of package â€˜lmerTestâ€™ had non-zero exit status
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp1eLQxZ/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 122 / 238: locfit
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/locfit_1.5-9.5.tar.gz'
-Content type 'application/x-gzip' length 201031 bytes (196 KB)
-==================================================
-downloaded 196 KB
-
-foundpkgs: locfit, /tmp/Rtmp6Bekvg/downloaded_packages/locfit_1.5-9.5.tar.gz
-files: /tmp/Rtmp6Bekvg/downloaded_packages/locfit_1.5-9.5.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6Bekvg/downloaded_packages/locfit_1.5-9.5.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp6Bekvg/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 123 / 238: lubridate
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/lubridate_1.8.0.tar.gz'
-Content type 'application/x-gzip' length 475704 bytes (464 KB)
-==================================================
-downloaded 464 KB
-
-foundpkgs: lubridate, /tmp/RtmpM5tc3k/downloaded_packages/lubridate_1.8.0.tar.gz
-files: /tmp/RtmpM5tc3k/downloaded_packages/lubridate_1.8.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpM5tc3k/downloaded_packages/lubridate_1.8.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpM5tc3k/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 124 / 238: magrittr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/magrittr_2.0.2.tar.gz'
-Content type 'application/x-gzip' length 267039 bytes (260 KB)
-==================================================
-downloaded 260 KB
-
-foundpkgs: magrittr, /tmp/Rtmp7PowH3/downloaded_packages/magrittr_2.0.2.tar.gz
-files: /tmp/Rtmp7PowH3/downloaded_packages/magrittr_2.0.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7PowH3/downloaded_packages/magrittr_2.0.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp7PowH3/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 125 / 238: maptools
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/maptools_1.1-3.tar.gz'
-Content type 'application/x-gzip' length 1643257 bytes (1.6 MB)
-==================================================
-downloaded 1.6 MB
-
-foundpkgs: maptools, /tmp/RtmpNarBod/downloaded_packages/maptools_1.1-3.tar.gz
-files: /tmp/RtmpNarBod/downloaded_packages/maptools_1.1-3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpNarBod/downloaded_packages/maptools_1.1-3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpNarBod/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 126 / 238: markdown
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/markdown_1.1.tar.gz'
-Content type 'application/x-gzip' length 81050 bytes (79 KB)
-==================================================
-downloaded 79 KB
-
-foundpkgs: markdown, /tmp/RtmpikzOTj/downloaded_packages/markdown_1.1.tar.gz
-files: /tmp/RtmpikzOTj/downloaded_packages/markdown_1.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpikzOTj/downloaded_packages/markdown_1.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpikzOTj/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 127 / 238: marray
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜marrayâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 128 / 238: MatrixGenerics
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜MatrixGenericsâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 129 / 238: MatrixModels
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/MatrixModels_0.5-0.tar.gz'
-Content type 'application/x-gzip' length 24045 bytes (23 KB)
-==================================================
-downloaded 23 KB
-
-foundpkgs: MatrixModels, /tmp/RtmpYPTQjJ/downloaded_packages/MatrixModels_0.5-0.tar.gz
-files: /tmp/RtmpYPTQjJ/downloaded_packages/MatrixModels_0.5-0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpYPTQjJ/downloaded_packages/MatrixModels_0.5-0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpYPTQjJ/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 130 / 238: matrixStats
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/matrixStats_0.61.0.tar.gz'
-Content type 'application/x-gzip' length 201077 bytes (196 KB)
-==================================================
-downloaded 196 KB
-
-foundpkgs: matrixStats, /tmp/Rtmpi41kK1/downloaded_packages/matrixStats_0.61.0.tar.gz
-files: /tmp/Rtmpi41kK1/downloaded_packages/matrixStats_0.61.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi41kK1/downloaded_packages/matrixStats_0.61.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpi41kK1/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 131 / 238: memoise
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/memoise_2.0.1.tar.gz'
-Content type 'application/x-gzip' length 17852 bytes (17 KB)
-==================================================
-downloaded 17 KB
-
-foundpkgs: memoise, /tmp/RtmpskhqfR/downloaded_packages/memoise_2.0.1.tar.gz
-files: /tmp/RtmpskhqfR/downloaded_packages/memoise_2.0.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpskhqfR/downloaded_packages/memoise_2.0.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpskhqfR/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 132 / 238: mime
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/mime_0.12.tar.gz'
-Content type 'application/x-gzip' length 12562 bytes (12 KB)
-==================================================
-downloaded 12 KB
-
-foundpkgs: mime, /tmp/RtmpKOeGAo/downloaded_packages/mime_0.12.tar.gz
-files: /tmp/RtmpKOeGAo/downloaded_packages/mime_0.12.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpKOeGAo/downloaded_packages/mime_0.12.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpKOeGAo/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 133 / 238: minqa
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/minqa_1.2.4.tar.gz'
-Content type 'application/x-gzip' length 53548 bytes (52 KB)
-==================================================
-downloaded 52 KB
-
-foundpkgs: minqa, /tmp/RtmpjX6Miv/downloaded_packages/minqa_1.2.4.tar.gz
-files: /tmp/RtmpjX6Miv/downloaded_packages/minqa_1.2.4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpjX6Miv/downloaded_packages/minqa_1.2.4.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpjX6Miv/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 134 / 238: mockery
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/mockery_0.4.3.tar.gz'
-Content type 'application/x-gzip' length 20854 bytes (20 KB)
-==================================================
-downloaded 20 KB
-
-foundpkgs: mockery, /tmp/RtmpeNBusx/downloaded_packages/mockery_0.4.3.tar.gz
-files: /tmp/RtmpeNBusx/downloaded_packages/mockery_0.4.3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeNBusx/downloaded_packages/mockery_0.4.3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpeNBusx/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 135 / 238: modelr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/modelr_0.1.8.tar.gz'
-Content type 'application/x-gzip' length 121333 bytes (118 KB)
-==================================================
-downloaded 118 KB
-
-foundpkgs: modelr, /tmp/Rtmp1sdDs3/downloaded_packages/modelr_0.1.8.tar.gz
-files: /tmp/Rtmp1sdDs3/downloaded_packages/modelr_0.1.8.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1sdDs3/downloaded_packages/modelr_0.1.8.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp1sdDs3/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 136 / 238: munsell
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/munsell_0.5.0.tar.gz'
-Content type 'application/x-gzip' length 182653 bytes (178 KB)
-==================================================
-downloaded 178 KB
-
-foundpkgs: munsell, /tmp/RtmpIo5rwq/downloaded_packages/munsell_0.5.0.tar.gz
-files: /tmp/RtmpIo5rwq/downloaded_packages/munsell_0.5.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpIo5rwq/downloaded_packages/munsell_0.5.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpIo5rwq/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 137 / 238: mvtnorm
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/mvtnorm_1.1-3.tar.gz'
-Content type 'application/x-gzip' length 166421 bytes (162 KB)
-==================================================
-downloaded 162 KB
-
-foundpkgs: mvtnorm, /tmp/Rtmp8G2w4G/downloaded_packages/mvtnorm_1.1-3.tar.gz
-files: /tmp/Rtmp8G2w4G/downloaded_packages/mvtnorm_1.1-3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8G2w4G/downloaded_packages/mvtnorm_1.1-3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp8G2w4G/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 138 / 238: nloptr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/nloptr_2.0.0.tar.gz'
-Content type 'application/x-gzip' length 2219414 bytes (2.1 MB)
-==================================================
-downloaded 2.1 MB
-
-foundpkgs: nloptr, /tmp/RtmpkO3nVu/downloaded_packages/nloptr_2.0.0.tar.gz
-files: /tmp/RtmpkO3nVu/downloaded_packages/nloptr_2.0.0.tar.gz
-Warning in install.packages(pkgs = "nloptr", lib = "/usr/local/lib/R/site-library",  :
-  installation of package â€˜nloptrâ€™ had non-zero exit status
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpkO3nVu/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 139 / 238: numDeriv
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/numDeriv_2016.8-1.1.tar.gz'
-Content type 'application/x-gzip' length 76053 bytes (74 KB)
-==================================================
-downloaded 74 KB
-
-foundpkgs: numDeriv, /tmp/RtmpPZmKeC/downloaded_packages/numDeriv_2016.8-1.1.tar.gz
-files: /tmp/RtmpPZmKeC/downloaded_packages/numDeriv_2016.8-1.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpPZmKeC/downloaded_packages/numDeriv_2016.8-1.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpPZmKeC/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 140 / 238: openssl
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/openssl_2.0.0.tar.gz'
-Content type 'application/x-gzip' length 1200448 bytes (1.1 MB)
-==================================================
-downloaded 1.1 MB
-
-foundpkgs: openssl, /tmp/RtmpjCixXS/downloaded_packages/openssl_2.0.0.tar.gz
-files: /tmp/RtmpjCixXS/downloaded_packages/openssl_2.0.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpjCixXS/downloaded_packages/openssl_2.0.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpjCixXS/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 141 / 238: openxlsx
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/openxlsx_4.2.5.tar.gz'
-Content type 'application/x-gzip' length 1340903 bytes (1.3 MB)
-==================================================
-downloaded 1.3 MB
-
-foundpkgs: openxlsx, /tmp/RtmpD7LSdD/downloaded_packages/openxlsx_4.2.5.tar.gz
-files: /tmp/RtmpD7LSdD/downloaded_packages/openxlsx_4.2.5.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpD7LSdD/downloaded_packages/openxlsx_4.2.5.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpD7LSdD/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 142 / 238: parallelly
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/parallelly_1.30.0.tar.gz'
-Content type 'application/x-gzip' length 115888 bytes (113 KB)
-==================================================
-downloaded 113 KB
-
-foundpkgs: parallelly, /tmp/RtmpxxucJK/downloaded_packages/parallelly_1.30.0.tar.gz
-files: /tmp/RtmpxxucJK/downloaded_packages/parallelly_1.30.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpxxucJK/downloaded_packages/parallelly_1.30.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpxxucJK/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 143 / 238: pbkrtest
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies â€˜nloptrâ€™, â€˜lme4â€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/nloptr_2.0.0.tar.gz'
-Content type 'application/x-gzip' length 2219414 bytes (2.1 MB)
-==================================================
-downloaded 2.1 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/lme4_1.1-28.tar.gz'
-Content type 'application/x-gzip' length 3306775 bytes (3.2 MB)
-==================================================
-downloaded 3.2 MB
-
-trying URL 'https://cran.irsn.fr/src/contrib/pbkrtest_0.5.1.tar.gz'
-Content type 'application/x-gzip' length 246327 bytes (240 KB)
-==================================================
-downloaded 240 KB
-
-foundpkgs: nloptr, lme4, pbkrtest, /tmp/Rtmph4mF5Y/downloaded_packages/nloptr_2.0.0.tar.gz, /tmp/Rtmph4mF5Y/downloaded_packages/lme4_1.1-28.tar.gz, /tmp/Rtmph4mF5Y/downloaded_packages/pbkrtest_0.5.1.tar.gz
-files: /tmp/Rtmph4mF5Y/downloaded_packages/nloptr_2.0.0.tar.gz, 
-	/tmp/Rtmph4mF5Y/downloaded_packages/lme4_1.1-28.tar.gz, 
-	/tmp/Rtmph4mF5Y/downloaded_packages/pbkrtest_0.5.1.tar.gz
-Warning in install.packages(pkgs = "pbkrtest", lib = "/usr/local/lib/R/site-library",  :
-  installation of package â€˜nloptrâ€™ had non-zero exit status
-Warning in install.packages(pkgs = "pbkrtest", lib = "/usr/local/lib/R/site-library",  :
-  installation of package â€˜lme4â€™ had non-zero exit status
-Warning in install.packages(pkgs = "pbkrtest", lib = "/usr/local/lib/R/site-library",  :
-  installation of package â€˜pbkrtestâ€™ had non-zero exit status
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmph4mF5Y/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 144 / 238: pheatmap
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/pheatmap_1.0.12.tar.gz'
-Content type 'application/x-gzip' length 15071 bytes (14 KB)
-==================================================
-downloaded 14 KB
-
-foundpkgs: pheatmap, /tmp/RtmpFLQPuf/downloaded_packages/pheatmap_1.0.12.tar.gz
-files: /tmp/RtmpFLQPuf/downloaded_packages/pheatmap_1.0.12.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpFLQPuf/downloaded_packages/pheatmap_1.0.12.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpFLQPuf/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 145 / 238: pillar
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/pillar_1.7.0.tar.gz'
-Content type 'application/x-gzip' length 529668 bytes (517 KB)
-==================================================
-downloaded 517 KB
-
-foundpkgs: pillar, /tmp/RtmptAMdLC/downloaded_packages/pillar_1.7.0.tar.gz
-files: /tmp/RtmptAMdLC/downloaded_packages/pillar_1.7.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmptAMdLC/downloaded_packages/pillar_1.7.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmptAMdLC/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 146 / 238: pkgbuild
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/pkgbuild_1.3.1.tar.gz'
-Content type 'application/x-gzip' length 31937 bytes (31 KB)
-==================================================
-downloaded 31 KB
-
-foundpkgs: pkgbuild, /tmp/Rtmp3ZPyWa/downloaded_packages/pkgbuild_1.3.1.tar.gz
-files: /tmp/Rtmp3ZPyWa/downloaded_packages/pkgbuild_1.3.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp3ZPyWa/downloaded_packages/pkgbuild_1.3.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp3ZPyWa/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 147 / 238: pkgconfig
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/pkgconfig_2.0.3.tar.gz'
-Content type 'application/x-gzip' length 6080 bytes
-==================================================
-downloaded 6080 bytes
-
-foundpkgs: pkgconfig, /tmp/RtmpbkrWtF/downloaded_packages/pkgconfig_2.0.3.tar.gz
-files: /tmp/RtmpbkrWtF/downloaded_packages/pkgconfig_2.0.3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpbkrWtF/downloaded_packages/pkgconfig_2.0.3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpbkrWtF/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 148 / 238: pkgload
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/pkgload_1.2.4.tar.gz'
-Content type 'application/x-gzip' length 62827 bytes (61 KB)
-==================================================
-downloaded 61 KB
-
-foundpkgs: pkgload, /tmp/RtmpqLBVEZ/downloaded_packages/pkgload_1.2.4.tar.gz
-files: /tmp/RtmpqLBVEZ/downloaded_packages/pkgload_1.2.4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpqLBVEZ/downloaded_packages/pkgload_1.2.4.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpqLBVEZ/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 149 / 238: plogr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/plogr_0.2.0.tar.gz'
-Content type 'application/x-gzip' length 7795 bytes
-==================================================
-downloaded 7795 bytes
-
-foundpkgs: plogr, /tmp/RtmpQEAgXv/downloaded_packages/plogr_0.2.0.tar.gz
-files: /tmp/RtmpQEAgXv/downloaded_packages/plogr_0.2.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQEAgXv/downloaded_packages/plogr_0.2.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpQEAgXv/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 150 / 238: plyr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/plyr_1.8.6.tar.gz'
-Content type 'application/x-gzip' length 401191 bytes (391 KB)
-==================================================
-downloaded 391 KB
-
-foundpkgs: plyr, /tmp/Rtmp4sbo1B/downloaded_packages/plyr_1.8.6.tar.gz
-files: /tmp/Rtmp4sbo1B/downloaded_packages/plyr_1.8.6.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp4sbo1B/downloaded_packages/plyr_1.8.6.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp4sbo1B/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 151 / 238: png
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/png_0.1-7.tar.gz'
-Content type 'application/x-gzip' length 24990 bytes (24 KB)
-==================================================
-downloaded 24 KB
-
-foundpkgs: png, /tmp/RtmpRHx67Y/downloaded_packages/png_0.1-7.tar.gz
-files: /tmp/RtmpRHx67Y/downloaded_packages/png_0.1-7.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpRHx67Y/downloaded_packages/png_0.1-7.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpRHx67Y/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 152 / 238: praise
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/praise_1.0.0.tar.gz'
-Content type 'application/x-gzip' length 6100 bytes
-==================================================
-downloaded 6100 bytes
-
-foundpkgs: praise, /tmp/RtmpKfJdcg/downloaded_packages/praise_1.0.0.tar.gz
-files: /tmp/RtmpKfJdcg/downloaded_packages/praise_1.0.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpKfJdcg/downloaded_packages/praise_1.0.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpKfJdcg/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 153 / 238: prettyGraphs
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/prettyGraphs_2.1.6.tar.gz'
-Content type 'application/x-gzip' length 16893 bytes (16 KB)
-==================================================
-downloaded 16 KB
-
-foundpkgs: prettyGraphs, /tmp/RtmpLd4yay/downloaded_packages/prettyGraphs_2.1.6.tar.gz
-files: /tmp/RtmpLd4yay/downloaded_packages/prettyGraphs_2.1.6.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLd4yay/downloaded_packages/prettyGraphs_2.1.6.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpLd4yay/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 154 / 238: prettyunits
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/prettyunits_1.1.1.tar.gz'
-Content type 'application/x-gzip' length 10366 bytes (10 KB)
-==================================================
-downloaded 10 KB
-
-foundpkgs: prettyunits, /tmp/RtmpEasYsP/downloaded_packages/prettyunits_1.1.1.tar.gz
-files: /tmp/RtmpEasYsP/downloaded_packages/prettyunits_1.1.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpEasYsP/downloaded_packages/prettyunits_1.1.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpEasYsP/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 155 / 238: processx
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/processx_3.5.2.tar.gz'
-Content type 'application/x-gzip' length 141424 bytes (138 KB)
-==================================================
-downloaded 138 KB
-
-foundpkgs: processx, /tmp/RtmprXQvZ6/downloaded_packages/processx_3.5.2.tar.gz
-files: /tmp/RtmprXQvZ6/downloaded_packages/processx_3.5.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmprXQvZ6/downloaded_packages/processx_3.5.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmprXQvZ6/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 156 / 238: progress
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/progress_1.2.2.tar.gz'
-Content type 'application/x-gzip' length 29506 bytes (28 KB)
-==================================================
-downloaded 28 KB
-
-foundpkgs: progress, /tmp/Rtmp6Duadr/downloaded_packages/progress_1.2.2.tar.gz
-files: /tmp/Rtmp6Duadr/downloaded_packages/progress_1.2.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6Duadr/downloaded_packages/progress_1.2.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp6Duadr/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 157 / 238: promises
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/promises_1.2.0.1.tar.gz'
-Content type 'application/x-gzip' length 3120504 bytes (3.0 MB)
-==================================================
-downloaded 3.0 MB
-
-foundpkgs: promises, /tmp/RtmpbNL4KW/downloaded_packages/promises_1.2.0.1.tar.gz
-files: /tmp/RtmpbNL4KW/downloaded_packages/promises_1.2.0.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpbNL4KW/downloaded_packages/promises_1.2.0.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpbNL4KW/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 158 / 238: ps
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/ps_1.6.0.tar.gz'
-Content type 'application/x-gzip' length 119670 bytes (116 KB)
-==================================================
-downloaded 116 KB
-
-foundpkgs: ps, /tmp/RtmpApf90g/downloaded_packages/ps_1.6.0.tar.gz
-files: /tmp/RtmpApf90g/downloaded_packages/ps_1.6.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpApf90g/downloaded_packages/ps_1.6.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpApf90g/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 159 / 238: pspearman
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/pspearman_0.3-0.tar.gz'
-Content type 'application/x-gzip' length 42574 bytes (41 KB)
-==================================================
-downloaded 41 KB
-
-foundpkgs: pspearman, /tmp/RtmpR8Vrdr/downloaded_packages/pspearman_0.3-0.tar.gz
-files: /tmp/RtmpR8Vrdr/downloaded_packages/pspearman_0.3-0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpR8Vrdr/downloaded_packages/pspearman_0.3-0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpR8Vrdr/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 160 / 238: purrr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/purrr_0.3.4.tar.gz'
-Content type 'application/x-gzip' length 375062 bytes (366 KB)
-==================================================
-downloaded 366 KB
-
-foundpkgs: purrr, /tmp/RtmpMlS5o8/downloaded_packages/purrr_0.3.4.tar.gz
-files: /tmp/RtmpMlS5o8/downloaded_packages/purrr_0.3.4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpMlS5o8/downloaded_packages/purrr_0.3.4.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpMlS5o8/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 161 / 238: QDNAseq
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜QDNAseqâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 162 / 238: quantreg
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/quantreg_5.88.tar.gz'
-Content type 'application/x-gzip' length 1016964 bytes (993 KB)
-==================================================
-downloaded 993 KB
-
-foundpkgs: quantreg, /tmp/Rtmpo8IKkh/downloaded_packages/quantreg_5.88.tar.gz
-files: /tmp/Rtmpo8IKkh/downloaded_packages/quantreg_5.88.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpo8IKkh/downloaded_packages/quantreg_5.88.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpo8IKkh/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 163 / 238: R.methodsS3
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/R.methodsS3_1.8.1.tar.gz'
-Content type 'application/x-gzip' length 23717 bytes (23 KB)
-==================================================
-downloaded 23 KB
-
-foundpkgs: R.methodsS3, /tmp/Rtmp2F1Klr/downloaded_packages/R.methodsS3_1.8.1.tar.gz
-files: /tmp/Rtmp2F1Klr/downloaded_packages/R.methodsS3_1.8.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp2F1Klr/downloaded_packages/R.methodsS3_1.8.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp2F1Klr/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 164 / 238: R.oo
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/R.oo_1.24.0.tar.gz'
-Content type 'application/x-gzip' length 383514 bytes (374 KB)
-==================================================
-downloaded 374 KB
-
-foundpkgs: R.oo, /tmp/Rtmp1mjm3z/downloaded_packages/R.oo_1.24.0.tar.gz
-files: /tmp/Rtmp1mjm3z/downloaded_packages/R.oo_1.24.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1mjm3z/downloaded_packages/R.oo_1.24.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp1mjm3z/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 165 / 238: R.utils
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/R.utils_2.11.0.tar.gz'
-Content type 'application/x-gzip' length 362860 bytes (354 KB)
-==================================================
-downloaded 354 KB
-
-foundpkgs: R.utils, /tmp/Rtmpr8DNNM/downloaded_packages/R.utils_2.11.0.tar.gz
-files: /tmp/Rtmpr8DNNM/downloaded_packages/R.utils_2.11.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpr8DNNM/downloaded_packages/R.utils_2.11.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpr8DNNM/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 166 / 238: R6
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/R6_2.5.1.tar.gz'
-Content type 'application/x-gzip' length 63422 bytes (61 KB)
-==================================================
-downloaded 61 KB
-
-foundpkgs: R6, /tmp/Rtmpv6jvWR/downloaded_packages/R6_2.5.1.tar.gz
-files: /tmp/Rtmpv6jvWR/downloaded_packages/R6_2.5.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpv6jvWR/downloaded_packages/R6_2.5.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpv6jvWR/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 167 / 238: rappdirs
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/rappdirs_0.3.3.tar.gz'
-Content type 'application/x-gzip' length 12288 bytes (12 KB)
-==================================================
-downloaded 12 KB
-
-foundpkgs: rappdirs, /tmp/Rtmp2XKg5b/downloaded_packages/rappdirs_0.3.3.tar.gz
-files: /tmp/Rtmp2XKg5b/downloaded_packages/rappdirs_0.3.3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp2XKg5b/downloaded_packages/rappdirs_0.3.3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp2XKg5b/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 168 / 238: rcmdcheck
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/rcmdcheck_1.4.0.tar.gz'
-Content type 'application/x-gzip' length 73522 bytes (71 KB)
-==================================================
-downloaded 71 KB
-
-foundpkgs: rcmdcheck, /tmp/RtmpiM9yok/downloaded_packages/rcmdcheck_1.4.0.tar.gz
-files: /tmp/RtmpiM9yok/downloaded_packages/rcmdcheck_1.4.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpiM9yok/downloaded_packages/rcmdcheck_1.4.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpiM9yok/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 169 / 238: RColorBrewer
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/RColorBrewer_1.1-2.tar.gz'
-Content type 'application/x-gzip' length 11532 bytes (11 KB)
-==================================================
-downloaded 11 KB
-
-foundpkgs: RColorBrewer, /tmp/RtmpU4hetM/downloaded_packages/RColorBrewer_1.1-2.tar.gz
-files: /tmp/RtmpU4hetM/downloaded_packages/RColorBrewer_1.1-2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpU4hetM/downloaded_packages/RColorBrewer_1.1-2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpU4hetM/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 170 / 238: Rcpp
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/Rcpp_1.0.8.tar.gz'
-Content type 'application/x-gzip' length 3036631 bytes (2.9 MB)
-==================================================
-downloaded 2.9 MB
-
-foundpkgs: Rcpp, /tmp/RtmpqSgxG5/downloaded_packages/Rcpp_1.0.8.tar.gz
-files: /tmp/RtmpqSgxG5/downloaded_packages/Rcpp_1.0.8.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpqSgxG5/downloaded_packages/Rcpp_1.0.8.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpqSgxG5/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 171 / 238: RcppArmadillo
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/RcppArmadillo_0.10.8.1.0.tar.gz'
-Content type 'application/x-gzip' length 1364404 bytes (1.3 MB)
-==================================================
-downloaded 1.3 MB
-
-foundpkgs: RcppArmadillo, /tmp/RtmpUFrll6/downloaded_packages/RcppArmadillo_0.10.8.1.0.tar.gz
-files: /tmp/RtmpUFrll6/downloaded_packages/RcppArmadillo_0.10.8.1.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpUFrll6/downloaded_packages/RcppArmadillo_0.10.8.1.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpUFrll6/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 172 / 238: RcppEigen
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/RcppEigen_0.3.3.9.1.tar.gz'
-Content type 'application/x-gzip' length 1633360 bytes (1.6 MB)
-==================================================
-downloaded 1.6 MB
-
-foundpkgs: RcppEigen, /tmp/RtmpUW6tQk/downloaded_packages/RcppEigen_0.3.3.9.1.tar.gz
-files: /tmp/RtmpUW6tQk/downloaded_packages/RcppEigen_0.3.3.9.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpUW6tQk/downloaded_packages/RcppEigen_0.3.3.9.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpUW6tQk/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 173 / 238: RCurl
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/RCurl_1.98-1.6.tar.gz'
-Content type 'application/x-gzip' length 731035 bytes (713 KB)
-==================================================
-downloaded 713 KB
-
-foundpkgs: RCurl, /tmp/Rtmpaj2vjT/downloaded_packages/RCurl_1.98-1.6.tar.gz
-files: /tmp/Rtmpaj2vjT/downloaded_packages/RCurl_1.98-1.6.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpaj2vjT/downloaded_packages/RCurl_1.98-1.6.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpaj2vjT/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 174 / 238: readr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/readr_2.1.2.tar.gz'
-Content type 'application/x-gzip' length 302240 bytes (295 KB)
-==================================================
-downloaded 295 KB
-
-foundpkgs: readr, /tmp/RtmpnP8TrA/downloaded_packages/readr_2.1.2.tar.gz
-files: /tmp/RtmpnP8TrA/downloaded_packages/readr_2.1.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpnP8TrA/downloaded_packages/readr_2.1.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpnP8TrA/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 175 / 238: readxl
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/readxl_1.3.1.tar.gz'
-Content type 'application/x-gzip' length 2056165 bytes (2.0 MB)
-==================================================
-downloaded 2.0 MB
-
-foundpkgs: readxl, /tmp/RtmpMSZHw1/downloaded_packages/readxl_1.3.1.tar.gz
-files: /tmp/RtmpMSZHw1/downloaded_packages/readxl_1.3.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpMSZHw1/downloaded_packages/readxl_1.3.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpMSZHw1/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 176 / 238: rematch
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/rematch_1.0.1.tar.gz'
-Content type 'application/x-gzip' length 3719 bytes
-==================================================
-downloaded 3719 bytes
-
-foundpkgs: rematch, /tmp/RtmpREHbpW/downloaded_packages/rematch_1.0.1.tar.gz
-files: /tmp/RtmpREHbpW/downloaded_packages/rematch_1.0.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpREHbpW/downloaded_packages/rematch_1.0.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpREHbpW/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 177 / 238: rematch2
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/rematch2_2.1.2.tar.gz'
-Content type 'application/x-gzip' length 13366 bytes (13 KB)
-==================================================
-downloaded 13 KB
-
-foundpkgs: rematch2, /tmp/RtmpxHJCUb/downloaded_packages/rematch2_2.1.2.tar.gz
-files: /tmp/RtmpxHJCUb/downloaded_packages/rematch2_2.1.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpxHJCUb/downloaded_packages/rematch2_2.1.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpxHJCUb/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 178 / 238: remotes
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/remotes_2.4.2.tar.gz'
-Content type 'application/x-gzip' length 152540 bytes (148 KB)
-==================================================
-downloaded 148 KB
-
-foundpkgs: remotes, /tmp/RtmpnkmOBH/downloaded_packages/remotes_2.4.2.tar.gz
-files: /tmp/RtmpnkmOBH/downloaded_packages/remotes_2.4.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpnkmOBH/downloaded_packages/remotes_2.4.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpnkmOBH/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 179 / 238: reprex
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/reprex_2.0.1.tar.gz'
-Content type 'application/x-gzip' length 1087338 bytes (1.0 MB)
-==================================================
-downloaded 1.0 MB
-
-foundpkgs: reprex, /tmp/RtmpP06ZVZ/downloaded_packages/reprex_2.0.1.tar.gz
-files: /tmp/RtmpP06ZVZ/downloaded_packages/reprex_2.0.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpP06ZVZ/downloaded_packages/reprex_2.0.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpP06ZVZ/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 180 / 238: reshape
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/reshape_0.8.8.tar.gz'
-Content type 'application/x-gzip' length 42558 bytes (41 KB)
-==================================================
-downloaded 41 KB
-
-foundpkgs: reshape, /tmp/RtmpIpqiSm/downloaded_packages/reshape_0.8.8.tar.gz
-files: /tmp/RtmpIpqiSm/downloaded_packages/reshape_0.8.8.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpIpqiSm/downloaded_packages/reshape_0.8.8.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpIpqiSm/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 181 / 238: reshape2
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/reshape2_1.4.4.tar.gz'
-Content type 'application/x-gzip' length 37307 bytes (36 KB)
-==================================================
-downloaded 36 KB
-
-foundpkgs: reshape2, /tmp/RtmpHuoscH/downloaded_packages/reshape2_1.4.4.tar.gz
-files: /tmp/RtmpHuoscH/downloaded_packages/reshape2_1.4.4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpHuoscH/downloaded_packages/reshape2_1.4.4.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpHuoscH/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 182 / 238: reticulate
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-also installing the dependencies â€˜RcppTOMLâ€™, â€˜hereâ€™
-
-trying URL 'https://cran.irsn.fr/src/contrib/RcppTOML_0.1.7.tar.gz'
-Content type 'application/x-gzip' length 42551 bytes (41 KB)
-==================================================
-downloaded 41 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/here_1.0.1.tar.gz'
-Content type 'application/x-gzip' length 32954 bytes (32 KB)
-==================================================
-downloaded 32 KB
-
-trying URL 'https://cran.irsn.fr/src/contrib/reticulate_1.24.tar.gz'
-Content type 'application/x-gzip' length 1537517 bytes (1.5 MB)
-==================================================
-downloaded 1.5 MB
-
-foundpkgs: RcppTOML, here, reticulate, /tmp/RtmpXFS02B/downloaded_packages/RcppTOML_0.1.7.tar.gz, /tmp/RtmpXFS02B/downloaded_packages/here_1.0.1.tar.gz, /tmp/RtmpXFS02B/downloaded_packages/reticulate_1.24.tar.gz
-files: /tmp/RtmpXFS02B/downloaded_packages/RcppTOML_0.1.7.tar.gz, 
-	/tmp/RtmpXFS02B/downloaded_packages/here_1.0.1.tar.gz, 
-	/tmp/RtmpXFS02B/downloaded_packages/reticulate_1.24.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXFS02B/downloaded_packages/RcppTOML_0.1.7.tar.gz''
-2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXFS02B/downloaded_packages/here_1.0.1.tar.gz''
-3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXFS02B/downloaded_packages/reticulate_1.24.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpXFS02B/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 183 / 238: rex
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/rex_1.2.1.tar.gz'
-Content type 'application/x-gzip' length 93583 bytes (91 KB)
-==================================================
-downloaded 91 KB
-
-foundpkgs: rex, /tmp/RtmpqxElHq/downloaded_packages/rex_1.2.1.tar.gz
-files: /tmp/RtmpqxElHq/downloaded_packages/rex_1.2.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpqxElHq/downloaded_packages/rex_1.2.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpqxElHq/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 184 / 238: rhdf5
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜rhdf5â€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 185 / 238: rhdf5filters
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜rhdf5filtersâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 186 / 238: Rhdf5lib
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜Rhdf5libâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 187 / 238: Rhtslib
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜Rhtslibâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 188 / 238: rio
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/rio_0.5.29.tar.gz'
-Content type 'application/x-gzip' length 445401 bytes (434 KB)
-==================================================
-downloaded 434 KB
-
-foundpkgs: rio, /tmp/RtmpugCoGx/downloaded_packages/rio_0.5.29.tar.gz
-files: /tmp/RtmpugCoGx/downloaded_packages/rio_0.5.29.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpugCoGx/downloaded_packages/rio_0.5.29.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpugCoGx/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 189 / 238: rlang
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/rlang_1.0.2.tar.gz'
-Content type 'application/x-gzip' length 724829 bytes (707 KB)
-==================================================
-downloaded 707 KB
-
-foundpkgs: rlang, /tmp/RtmpqnNkDV/downloaded_packages/rlang_1.0.2.tar.gz
-files: /tmp/RtmpqnNkDV/downloaded_packages/rlang_1.0.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpqnNkDV/downloaded_packages/rlang_1.0.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpqnNkDV/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 190 / 238: rmarkdown
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/rmarkdown_2.12.tar.gz'
-Content type 'application/x-gzip' length 3235953 bytes (3.1 MB)
-==================================================
-downloaded 3.1 MB
-
-foundpkgs: rmarkdown, /tmp/RtmpQuyCaS/downloaded_packages/rmarkdown_2.12.tar.gz
-files: /tmp/RtmpQuyCaS/downloaded_packages/rmarkdown_2.12.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQuyCaS/downloaded_packages/rmarkdown_2.12.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpQuyCaS/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 191 / 238: roxygen2
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/roxygen2_7.1.2.tar.gz'
-Content type 'application/x-gzip' length 267337 bytes (261 KB)
-==================================================
-downloaded 261 KB
-
-foundpkgs: roxygen2, /tmp/RtmpuGan9n/downloaded_packages/roxygen2_7.1.2.tar.gz
-files: /tmp/RtmpuGan9n/downloaded_packages/roxygen2_7.1.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpuGan9n/downloaded_packages/roxygen2_7.1.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpuGan9n/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 192 / 238: rprojroot
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/rprojroot_2.0.2.tar.gz'
-Content type 'application/x-gzip' length 59967 bytes (58 KB)
-==================================================
-downloaded 58 KB
-
-foundpkgs: rprojroot, /tmp/RtmpPbl4WC/downloaded_packages/rprojroot_2.0.2.tar.gz
-files: /tmp/RtmpPbl4WC/downloaded_packages/rprojroot_2.0.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpPbl4WC/downloaded_packages/rprojroot_2.0.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpPbl4WC/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 193 / 238: Rsamtools
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜Rsamtoolsâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 194 / 238: RSQLite
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/RSQLite_2.2.10.tar.gz'
-Content type 'application/x-gzip' length 3655877 bytes (3.5 MB)
-==================================================
-downloaded 3.5 MB
-
-foundpkgs: RSQLite, /tmp/Rtmpo2HmA6/downloaded_packages/RSQLite_2.2.10.tar.gz
-files: /tmp/Rtmpo2HmA6/downloaded_packages/RSQLite_2.2.10.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpo2HmA6/downloaded_packages/RSQLite_2.2.10.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpo2HmA6/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 195 / 238: rstudioapi
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/rstudioapi_0.13.tar.gz'
-Content type 'application/x-gzip' length 110472 bytes (107 KB)
-==================================================
-downloaded 107 KB
-
-foundpkgs: rstudioapi, /tmp/RtmpFAi37N/downloaded_packages/rstudioapi_0.13.tar.gz
-files: /tmp/RtmpFAi37N/downloaded_packages/rstudioapi_0.13.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpFAi37N/downloaded_packages/rstudioapi_0.13.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpFAi37N/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 196 / 238: rversions
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/rversions_2.1.1.tar.gz'
-Content type 'application/x-gzip' length 42064 bytes (41 KB)
-==================================================
-downloaded 41 KB
-
-foundpkgs: rversions, /tmp/Rtmpq2qhW8/downloaded_packages/rversions_2.1.1.tar.gz
-files: /tmp/Rtmpq2qhW8/downloaded_packages/rversions_2.1.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpq2qhW8/downloaded_packages/rversions_2.1.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpq2qhW8/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 197 / 238: rvest
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/rvest_1.0.2.tar.gz'
-Content type 'application/x-gzip' length 94357 bytes (92 KB)
-==================================================
-downloaded 92 KB
-
-foundpkgs: rvest, /tmp/Rtmp3x5QMr/downloaded_packages/rvest_1.0.2.tar.gz
-files: /tmp/Rtmp3x5QMr/downloaded_packages/rvest_1.0.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp3x5QMr/downloaded_packages/rvest_1.0.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp3x5QMr/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 198 / 238: S4Vectors
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜S4Vectorsâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 199 / 238: scales
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/scales_1.1.1.tar.gz'
-Content type 'application/x-gzip' length 515201 bytes (503 KB)
-==================================================
-downloaded 503 KB
-
-foundpkgs: scales, /tmp/RtmpIWoOOa/downloaded_packages/scales_1.1.1.tar.gz
-files: /tmp/RtmpIWoOOa/downloaded_packages/scales_1.1.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpIWoOOa/downloaded_packages/scales_1.1.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpIWoOOa/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 200 / 238: selectr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/selectr_0.4-2.tar.gz'
-Content type 'application/x-gzip' length 41371 bytes (40 KB)
-==================================================
-downloaded 40 KB
-
-foundpkgs: selectr, /tmp/RtmpLN1f1E/downloaded_packages/selectr_0.4-2.tar.gz
-files: /tmp/RtmpLN1f1E/downloaded_packages/selectr_0.4-2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLN1f1E/downloaded_packages/selectr_0.4-2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpLN1f1E/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 201 / 238: sessioninfo
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/sessioninfo_1.2.2.tar.gz'
-Content type 'application/x-gzip' length 170924 bytes (166 KB)
-==================================================
-downloaded 166 KB
-
-foundpkgs: sessioninfo, /tmp/RtmpXqFWTY/downloaded_packages/sessioninfo_1.2.2.tar.gz
-files: /tmp/RtmpXqFWTY/downloaded_packages/sessioninfo_1.2.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXqFWTY/downloaded_packages/sessioninfo_1.2.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpXqFWTY/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 202 / 238: snow
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/snow_0.4-4.tar.gz'
-Content type 'application/x-gzip' length 20464 bytes (19 KB)
-==================================================
-downloaded 19 KB
-
-foundpkgs: snow, /tmp/RtmpQCaRBt/downloaded_packages/snow_0.4-4.tar.gz
-files: /tmp/RtmpQCaRBt/downloaded_packages/snow_0.4-4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQCaRBt/downloaded_packages/snow_0.4-4.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpQCaRBt/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 203 / 238: snowfall
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/snowfall_1.84-6.1.tar.gz'
-Content type 'application/x-gzip' length 344407 bytes (336 KB)
-==================================================
-downloaded 336 KB
-
-foundpkgs: snowfall, /tmp/RtmpvG5jkB/downloaded_packages/snowfall_1.84-6.1.tar.gz
-files: /tmp/RtmpvG5jkB/downloaded_packages/snowfall_1.84-6.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpvG5jkB/downloaded_packages/snowfall_1.84-6.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpvG5jkB/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 204 / 238: sp
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/sp_1.4-6.tar.gz'
-Content type 'application/x-gzip' length 1423843 bytes (1.4 MB)
-==================================================
-downloaded 1.4 MB
-
-foundpkgs: sp, /tmp/RtmpZ7KLVM/downloaded_packages/sp_1.4-6.tar.gz
-files: /tmp/RtmpZ7KLVM/downloaded_packages/sp_1.4-6.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpZ7KLVM/downloaded_packages/sp_1.4-6.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpZ7KLVM/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 205 / 238: SparseM
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/SparseM_1.81.tar.gz'
-Content type 'application/x-gzip' length 735100 bytes (717 KB)
-==================================================
-downloaded 717 KB
-
-foundpkgs: SparseM, /tmp/RtmpbtgvPe/downloaded_packages/SparseM_1.81.tar.gz
-files: /tmp/RtmpbtgvPe/downloaded_packages/SparseM_1.81.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpbtgvPe/downloaded_packages/SparseM_1.81.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpbtgvPe/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 206 / 238: statmod
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-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/statmod_1.4.36.tar.gz'
-Content type 'application/x-gzip' length 93897 bytes (91 KB)
-==================================================
-downloaded 91 KB
-
-foundpkgs: statmod, /tmp/RtmpVoozTV/downloaded_packages/statmod_1.4.36.tar.gz
-files: /tmp/RtmpVoozTV/downloaded_packages/statmod_1.4.36.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpVoozTV/downloaded_packages/statmod_1.4.36.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpVoozTV/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 207 / 238: stringi
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/stringi_1.7.6.tar.gz'
-Content type 'application/x-gzip' length 7600716 bytes (7.2 MB)
-==================================================
-downloaded 7.2 MB
-
-foundpkgs: stringi, /tmp/RtmpdEiC2S/downloaded_packages/stringi_1.7.6.tar.gz
-files: /tmp/RtmpdEiC2S/downloaded_packages/stringi_1.7.6.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdEiC2S/downloaded_packages/stringi_1.7.6.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpdEiC2S/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 208 / 238: stringr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/stringr_1.4.0.tar.gz'
-Content type 'application/x-gzip' length 135777 bytes (132 KB)
-==================================================
-downloaded 132 KB
-
-foundpkgs: stringr, /tmp/Rtmp5z629M/downloaded_packages/stringr_1.4.0.tar.gz
-files: /tmp/Rtmp5z629M/downloaded_packages/stringr_1.4.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp5z629M/downloaded_packages/stringr_1.4.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp5z629M/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 209 / 238: SummarizedExperiment
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜SummarizedExperimentâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 210 / 238: SuppDists
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/SuppDists_1.1-9.7.tar.gz'
-Content type 'application/x-gzip' length 141797 bytes (138 KB)
-==================================================
-downloaded 138 KB
-
-foundpkgs: SuppDists, /tmp/RtmpGQCElg/downloaded_packages/SuppDists_1.1-9.7.tar.gz
-files: /tmp/RtmpGQCElg/downloaded_packages/SuppDists_1.1-9.7.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpGQCElg/downloaded_packages/SuppDists_1.1-9.7.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpGQCElg/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 211 / 238: svglite
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/svglite_2.1.0.tar.gz'
-Content type 'application/x-gzip' length 125198 bytes (122 KB)
-==================================================
-downloaded 122 KB
-
-foundpkgs: svglite, /tmp/RtmpcSlqzd/downloaded_packages/svglite_2.1.0.tar.gz
-files: /tmp/RtmpcSlqzd/downloaded_packages/svglite_2.1.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpcSlqzd/downloaded_packages/svglite_2.1.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpcSlqzd/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 212 / 238: sys
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/sys_3.4.tar.gz'
-Content type 'application/x-gzip' length 20138 bytes (19 KB)
-==================================================
-downloaded 19 KB
-
-foundpkgs: sys, /tmp/RtmpMckkTn/downloaded_packages/sys_3.4.tar.gz
-files: /tmp/RtmpMckkTn/downloaded_packages/sys_3.4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpMckkTn/downloaded_packages/sys_3.4.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpMckkTn/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 213 / 238: systemfonts
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/systemfonts_1.0.4.tar.gz'
-Content type 'application/x-gzip' length 81757 bytes (79 KB)
-==================================================
-downloaded 79 KB
-
-foundpkgs: systemfonts, /tmp/RtmpNC41et/downloaded_packages/systemfonts_1.0.4.tar.gz
-files: /tmp/RtmpNC41et/downloaded_packages/systemfonts_1.0.4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpNC41et/downloaded_packages/systemfonts_1.0.4.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpNC41et/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 214 / 238: testthat
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/testthat_3.1.2.tar.gz'
-Content type 'application/x-gzip' length 698658 bytes (682 KB)
-==================================================
-downloaded 682 KB
-
-foundpkgs: testthat, /tmp/RtmpsN4b7T/downloaded_packages/testthat_3.1.2.tar.gz
-files: /tmp/RtmpsN4b7T/downloaded_packages/testthat_3.1.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsN4b7T/downloaded_packages/testthat_3.1.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpsN4b7T/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 215 / 238: tibble
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/tibble_3.1.6.tar.gz'
-Content type 'application/x-gzip' length 739349 bytes (722 KB)
-==================================================
-downloaded 722 KB
-
-foundpkgs: tibble, /tmp/RtmpSjTxqU/downloaded_packages/tibble_3.1.6.tar.gz
-files: /tmp/RtmpSjTxqU/downloaded_packages/tibble_3.1.6.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSjTxqU/downloaded_packages/tibble_3.1.6.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpSjTxqU/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 216 / 238: tidyr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/tidyr_1.2.0.tar.gz'
-Content type 'application/x-gzip' length 744570 bytes (727 KB)
-==================================================
-downloaded 727 KB
-
-foundpkgs: tidyr, /tmp/RtmpV7FNgG/downloaded_packages/tidyr_1.2.0.tar.gz
-files: /tmp/RtmpV7FNgG/downloaded_packages/tidyr_1.2.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpV7FNgG/downloaded_packages/tidyr_1.2.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpV7FNgG/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 217 / 238: tidyselect
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/tidyselect_1.1.2.tar.gz'
-Content type 'application/x-gzip' length 92085 bytes (89 KB)
-==================================================
-downloaded 89 KB
-
-foundpkgs: tidyselect, /tmp/Rtmp5Smtfg/downloaded_packages/tidyselect_1.1.2.tar.gz
-files: /tmp/Rtmp5Smtfg/downloaded_packages/tidyselect_1.1.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp5Smtfg/downloaded_packages/tidyselect_1.1.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmp5Smtfg/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 218 / 238: tidyverse
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/tidyverse_1.3.1.tar.gz'
-Content type 'application/x-gzip' length 702779 bytes (686 KB)
-==================================================
-downloaded 686 KB
-
-foundpkgs: tidyverse, /tmp/RtmpiiCFSL/downloaded_packages/tidyverse_1.3.1.tar.gz
-files: /tmp/RtmpiiCFSL/downloaded_packages/tidyverse_1.3.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpiiCFSL/downloaded_packages/tidyverse_1.3.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpiiCFSL/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 219 / 238: tinytex
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/tinytex_0.37.tar.gz'
-Content type 'application/x-gzip' length 31576 bytes (30 KB)
-==================================================
-downloaded 30 KB
-
-foundpkgs: tinytex, /tmp/Rtmpo9fle8/downloaded_packages/tinytex_0.37.tar.gz
-files: /tmp/Rtmpo9fle8/downloaded_packages/tinytex_0.37.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpo9fle8/downloaded_packages/tinytex_0.37.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpo9fle8/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 220 / 238: usethis
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/usethis_2.1.5.tar.gz'
-Content type 'application/x-gzip' length 334909 bytes (327 KB)
-==================================================
-downloaded 327 KB
-
-foundpkgs: usethis, /tmp/RtmpoHEEKs/downloaded_packages/usethis_2.1.5.tar.gz
-files: /tmp/RtmpoHEEKs/downloaded_packages/usethis_2.1.5.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpoHEEKs/downloaded_packages/usethis_2.1.5.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpoHEEKs/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 221 / 238: utf8
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/utf8_1.2.2.tar.gz'
-Content type 'application/x-gzip' length 240327 bytes (234 KB)
-==================================================
-downloaded 234 KB
-
-foundpkgs: utf8, /tmp/RtmpISa60V/downloaded_packages/utf8_1.2.2.tar.gz
-files: /tmp/RtmpISa60V/downloaded_packages/utf8_1.2.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpISa60V/downloaded_packages/utf8_1.2.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpISa60V/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 222 / 238: uuid
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/uuid_1.0-3.tar.gz'
-Content type 'application/x-gzip' length 72003 bytes (70 KB)
-==================================================
-downloaded 70 KB
-
-foundpkgs: uuid, /tmp/RtmpVknoOP/downloaded_packages/uuid_1.0-3.tar.gz
-files: /tmp/RtmpVknoOP/downloaded_packages/uuid_1.0-3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpVknoOP/downloaded_packages/uuid_1.0-3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpVknoOP/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 223 / 238: vctrs
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/vctrs_0.3.8.tar.gz'
-Content type 'application/x-gzip' length 782608 bytes (764 KB)
-==================================================
-downloaded 764 KB
-
-foundpkgs: vctrs, /tmp/RtmpF2YMwL/downloaded_packages/vctrs_0.3.8.tar.gz
-files: /tmp/RtmpF2YMwL/downloaded_packages/vctrs_0.3.8.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpF2YMwL/downloaded_packages/vctrs_0.3.8.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpF2YMwL/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 224 / 238: viridisLite
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/viridisLite_0.4.0.tar.gz'
-Content type 'application/x-gzip' length 1267080 bytes (1.2 MB)
-==================================================
-downloaded 1.2 MB
-
-foundpkgs: viridisLite, /tmp/RtmpWTd4Af/downloaded_packages/viridisLite_0.4.0.tar.gz
-files: /tmp/RtmpWTd4Af/downloaded_packages/viridisLite_0.4.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpWTd4Af/downloaded_packages/viridisLite_0.4.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpWTd4Af/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 225 / 238: waldo
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/waldo_0.3.1.tar.gz'
-Content type 'application/x-gzip' length 33728 bytes (32 KB)
-==================================================
-downloaded 32 KB
-
-foundpkgs: waldo, /tmp/RtmpzrOHau/downloaded_packages/waldo_0.3.1.tar.gz
-files: /tmp/RtmpzrOHau/downloaded_packages/waldo_0.3.1.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpzrOHau/downloaded_packages/waldo_0.3.1.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpzrOHau/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 226 / 238: webshot
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/webshot_0.5.2.tar.gz'
-Content type 'application/x-gzip' length 157837 bytes (154 KB)
-==================================================
-downloaded 154 KB
-
-foundpkgs: webshot, /tmp/Rtmpu95rD0/downloaded_packages/webshot_0.5.2.tar.gz
-files: /tmp/Rtmpu95rD0/downloaded_packages/webshot_0.5.2.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpu95rD0/downloaded_packages/webshot_0.5.2.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/Rtmpu95rD0/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 227 / 238: whisker
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/whisker_0.4.tar.gz'
-Content type 'application/x-gzip' length 28574 bytes (27 KB)
-==================================================
-downloaded 27 KB
-
-foundpkgs: whisker, /tmp/RtmpjucZek/downloaded_packages/whisker_0.4.tar.gz
-files: /tmp/RtmpjucZek/downloaded_packages/whisker_0.4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpjucZek/downloaded_packages/whisker_0.4.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpjucZek/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 228 / 238: withr
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/withr_2.5.0.tar.gz'
-Content type 'application/x-gzip' length 102089 bytes (99 KB)
-==================================================
-downloaded 99 KB
-
-foundpkgs: withr, /tmp/RtmpWEJH1A/downloaded_packages/withr_2.5.0.tar.gz
-files: /tmp/RtmpWEJH1A/downloaded_packages/withr_2.5.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpWEJH1A/downloaded_packages/withr_2.5.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpWEJH1A/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 229 / 238: xfun
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/xfun_0.30.tar.gz'
-Content type 'application/x-gzip' length 125825 bytes (122 KB)
-==================================================
-downloaded 122 KB
-
-foundpkgs: xfun, /tmp/RtmpSlxqFT/downloaded_packages/xfun_0.30.tar.gz
-files: /tmp/RtmpSlxqFT/downloaded_packages/xfun_0.30.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSlxqFT/downloaded_packages/xfun_0.30.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpSlxqFT/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 230 / 238: XML
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/XML_3.99-0.9.tar.gz'
-Content type 'application/x-gzip' length 970514 bytes (947 KB)
-==================================================
-downloaded 947 KB
-
-foundpkgs: XML, /tmp/RtmptziNb3/downloaded_packages/XML_3.99-0.9.tar.gz
-files: /tmp/RtmptziNb3/downloaded_packages/XML_3.99-0.9.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmptziNb3/downloaded_packages/XML_3.99-0.9.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmptziNb3/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 231 / 238: xml2
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/xml2_1.3.3.tar.gz'
-Content type 'application/x-gzip' length 283965 bytes (277 KB)
-==================================================
-downloaded 277 KB
-
-foundpkgs: xml2, /tmp/RtmpBaoKz3/downloaded_packages/xml2_1.3.3.tar.gz
-files: /tmp/RtmpBaoKz3/downloaded_packages/xml2_1.3.3.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpBaoKz3/downloaded_packages/xml2_1.3.3.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpBaoKz3/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 232 / 238: xopen
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/xopen_1.0.0.tar.gz'
-Content type 'application/x-gzip' length 11221 bytes (10 KB)
-==================================================
-downloaded 10 KB
-
-foundpkgs: xopen, /tmp/RtmpsUGEII/downloaded_packages/xopen_1.0.0.tar.gz
-files: /tmp/RtmpsUGEII/downloaded_packages/xopen_1.0.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsUGEII/downloaded_packages/xopen_1.0.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpsUGEII/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 233 / 238: xtable
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/xtable_1.8-4.tar.gz'
-Content type 'application/x-gzip' length 564589 bytes (551 KB)
-==================================================
-downloaded 551 KB
-
-foundpkgs: xtable, /tmp/RtmpRUgrQY/downloaded_packages/xtable_1.8-4.tar.gz
-files: /tmp/RtmpRUgrQY/downloaded_packages/xtable_1.8-4.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpRUgrQY/downloaded_packages/xtable_1.8-4.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpRUgrQY/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 234 / 238: XVector
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜XVectorâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 235 / 238: yaml
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/yaml_2.3.5.tar.gz'
-Content type 'application/x-gzip' length 94535 bytes (92 KB)
-==================================================
-downloaded 92 KB
-
-foundpkgs: yaml, /tmp/RtmpWfCcjx/downloaded_packages/yaml_2.3.5.tar.gz
-files: /tmp/RtmpWfCcjx/downloaded_packages/yaml_2.3.5.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpWfCcjx/downloaded_packages/yaml_2.3.5.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpWfCcjx/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 236 / 238: zip
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-trying URL 'https://cran.irsn.fr/src/contrib/zip_2.2.0.tar.gz'
-Content type 'application/x-gzip' length 114391 bytes (111 KB)
-==================================================
-downloaded 111 KB
-
-foundpkgs: zip, /tmp/RtmpfQDhZQ/downloaded_packages/zip_2.2.0.tar.gz
-files: /tmp/RtmpfQDhZQ/downloaded_packages/zip_2.2.0.tar.gz
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpfQDhZQ/downloaded_packages/zip_2.2.0.tar.gz''
-
-The downloaded source packages are in
-	â€˜/tmp/RtmpfQDhZQ/downloaded_packagesâ€™
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 237 / 238: zlibbioc
-
-================
-
-
-
-
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-Warning: package â€˜zlibbiocâ€™ is not available for this version of R
-
-A version of this package for your version of R might be available elsewhere,
-see the ideas at
-https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
-
-
-
-
-================
-
-R PACKAGE INSTALLATION 238 / 238: ggplot2
-
-================
-
-
-
-
-now dyn.load("/usr/local/lib/R/site-library/fs/libs/fs.so") ...
-now dyn.load("/usr/local/lib/R/site-library/cli/libs/cli.so") ...
-now dyn.load("/usr/local/lib/R/site-library/rlang/libs/rlang.so") ...
-now dyn.load("/usr/local/lib/R/site-library/ellipsis/libs/ellipsis.so") ...
-now dyn.load("/usr/local/lib/R/site-library/fastmap/libs/fastmap.so") ...
-now dyn.load("/usr/local/lib/R/site-library/cachem/libs/cachem.so") ...
-now dyn.load("/usr/local/lib/R/site-library/processx/libs/processx.so") ...
-now dyn.load("/usr/local/lib/R/site-library/ps/libs/ps.so") ...
-now dyn.load("/usr/local/lib/R/site-library/brio/libs/brio.so") ...
-now dyn.load("/usr/local/lib/R/site-library/magrittr/libs/magrittr.so") ...
-now dyn.load("/usr/local/lib/R/site-library/testthat/libs/testthat.so") ...
-now dyn.load("/usr/lib/R/library/tools/libs/tools.so") ...
-now dyn.load("/usr/local/lib/R/site-library/glue/libs/glue.so") ...
-now dyn.load("/usr/local/lib/R/site-library/purrr/libs/purrr.so") ...
-Downloading package from url: https://cran.irsn.fr//src/contrib/Archive/ggplot2/ggplot2_3.3.3.tar.gz
-system (cmd0): /usr/lib/R/bin/R CMD INSTALL
-1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpIgJlVw/remotes20c541393346/ggplot2''
-
-
-
-
-================
-
-R PACKAGES INSTALLED
-
-================
-
-
-
-
-SEE ALSO THE installed_r_packages.csv TABLE IN THE ROOT OF THE CONTAINER
-
-
-now dyn.load("/usr/lib/R/library/tools/libs/tools.so") ...
-                      Package                       LibPath    Version
-abind                   abind /usr/local/lib/R/site-library      1.4-5
-askpass               askpass /usr/local/lib/R/site-library        1.1
-assertthat         assertthat /usr/local/lib/R/site-library      0.2.1
-backports           backports /usr/local/lib/R/site-library      1.4.1
-base64enc           base64enc /usr/local/lib/R/site-library      0.1-3
-BH                         BH /usr/local/lib/R/site-library   1.78.0-0
-BiocManager       BiocManager /usr/local/lib/R/site-library    1.30.16
-bit                       bit /usr/local/lib/R/site-library      4.0.4
-bit64                   bit64 /usr/local/lib/R/site-library      4.0.5
-bitops                 bitops /usr/local/lib/R/site-library      1.0-7
-blob                     blob /usr/local/lib/R/site-library      1.2.2
-brew                     brew /usr/local/lib/R/site-library      1.0-7
-brio                     brio /usr/local/lib/R/site-library      1.1.3
-broom                   broom /usr/local/lib/R/site-library     0.7.12
-bslib                   bslib /usr/local/lib/R/site-library      0.3.1
-cachem                 cachem /usr/local/lib/R/site-library      1.0.6
-Cairo                   Cairo /usr/local/lib/R/site-library     1.5-14
-callr                   callr /usr/local/lib/R/site-library      3.7.0
-carData               carData /usr/local/lib/R/site-library      3.0-5
-caTools               caTools /usr/local/lib/R/site-library     1.18.2
-cellranger         cellranger /usr/local/lib/R/site-library      1.1.0
-cli                       cli /usr/local/lib/R/site-library      3.2.0
-clipr                   clipr /usr/local/lib/R/site-library      0.8.0
-colorspace         colorspace /usr/local/lib/R/site-library      2.0-3
-commonmark         commonmark /usr/local/lib/R/site-library      1.8.0
-conquer               conquer /usr/local/lib/R/site-library      1.2.2
-corrplot             corrplot /usr/local/lib/R/site-library       0.92
-covr                     covr /usr/local/lib/R/site-library      3.5.1
-cpp11                   cpp11 /usr/local/lib/R/site-library      0.4.2
-crayon                 crayon /usr/local/lib/R/site-library      1.5.0
-credentials       credentials /usr/local/lib/R/site-library      1.3.2
-crosstalk           crosstalk /usr/local/lib/R/site-library      1.2.0
-curl                     curl /usr/local/lib/R/site-library      4.3.2
-data.table         data.table /usr/local/lib/R/site-library     1.14.2
-DBI                       DBI /usr/local/lib/R/site-library      1.1.2
-dbplyr                 dbplyr /usr/local/lib/R/site-library      2.1.1
-desc                     desc /usr/local/lib/R/site-library      1.4.1
-devtools             devtools /usr/local/lib/R/site-library      2.4.3
-diffobj               diffobj /usr/local/lib/R/site-library      0.3.5
-digest                 digest /usr/local/lib/R/site-library     0.6.29
-docopt                 docopt /usr/local/lib/R/site-library      0.7.1
-dplyr                   dplyr /usr/local/lib/R/site-library      1.0.8
-DT                         DT /usr/local/lib/R/site-library       0.21
-dtplyr                 dtplyr /usr/local/lib/R/site-library      1.2.1
-ellipsis             ellipsis /usr/local/lib/R/site-library      0.3.2
-emmeans               emmeans /usr/local/lib/R/site-library      1.7.2
-estimability     estimability /usr/local/lib/R/site-library        1.3
-evaluate             evaluate /usr/local/lib/R/site-library       0.15
-ExPosition         ExPosition /usr/local/lib/R/site-library     2.8.23
-fansi                   fansi /usr/local/lib/R/site-library      1.0.2
-farver                 farver /usr/local/lib/R/site-library      2.1.0
-fastmap               fastmap /usr/local/lib/R/site-library      1.1.0
-forcats               forcats /usr/local/lib/R/site-library      0.5.1
-formatR               formatR /usr/local/lib/R/site-library       1.11
-fs                         fs /usr/local/lib/R/site-library      1.5.2
-futile.logger   futile.logger /usr/local/lib/R/site-library      1.4.3
-futile.options futile.options /usr/local/lib/R/site-library      1.0.1
-future                 future /usr/local/lib/R/site-library     1.24.0
-future.apply     future.apply /usr/local/lib/R/site-library      1.8.1
-gargle                 gargle /usr/local/lib/R/site-library      1.2.0
-generics             generics /usr/local/lib/R/site-library      0.1.2
-gert                     gert /usr/local/lib/R/site-library      1.5.0
-GGally                 GGally /usr/local/lib/R/site-library      2.1.2
-ggdendro             ggdendro /usr/local/lib/R/site-library     0.1.23
-ggplot2               ggplot2 /usr/local/lib/R/site-library      3.3.3
-ggrepel               ggrepel /usr/local/lib/R/site-library      0.9.1
-ggseqlogo           ggseqlogo /usr/local/lib/R/site-library        0.1
-gh                         gh /usr/local/lib/R/site-library      1.3.0
-gitcreds             gitcreds /usr/local/lib/R/site-library      0.1.1
-githubinstall   githubinstall /usr/local/lib/R/site-library      0.2.2
-globals               globals /usr/local/lib/R/site-library     0.14.0
-glue                     glue /usr/local/lib/R/site-library      1.6.2
-googledrive       googledrive /usr/local/lib/R/site-library      2.0.0
-googlesheets4   googlesheets4 /usr/local/lib/R/site-library      1.0.0
-gplots                 gplots /usr/local/lib/R/site-library      3.1.1
-gridExtra           gridExtra /usr/local/lib/R/site-library        2.3
-gtable                 gtable /usr/local/lib/R/site-library      0.3.0
-gtools                 gtools /usr/local/lib/R/site-library      3.9.2
-haven                   haven /usr/local/lib/R/site-library      2.4.3
-here                     here /usr/local/lib/R/site-library      1.0.1
-highr                   highr /usr/local/lib/R/site-library        0.9
-hms                       hms /usr/local/lib/R/site-library      1.1.1
-htmltools           htmltools /usr/local/lib/R/site-library      0.5.2
-htmlwidgets       htmlwidgets /usr/local/lib/R/site-library      1.5.4
-httr                     httr /usr/local/lib/R/site-library      1.4.2
-ids                       ids /usr/local/lib/R/site-library      1.0.1
-ini                       ini /usr/local/lib/R/site-library      0.3.1
-isoband               isoband /usr/local/lib/R/site-library      0.2.5
-jpeg                     jpeg /usr/local/lib/R/site-library      0.1-9
-jquerylib           jquerylib /usr/local/lib/R/site-library      0.1.4
-jsonlite             jsonlite /usr/local/lib/R/site-library      1.8.0
-kableExtra         kableExtra /usr/local/lib/R/site-library      1.3.4
-knitr                   knitr /usr/local/lib/R/site-library       1.37
-labeling             labeling /usr/local/lib/R/site-library      0.4.2
-lambda.r             lambda.r /usr/local/lib/R/site-library      1.2.4
-later                   later /usr/local/lib/R/site-library      1.3.0
-lazyeval             lazyeval /usr/local/lib/R/site-library      0.2.2
-lemon                   lemon /usr/local/lib/R/site-library      0.4.5
-lifecycle           lifecycle /usr/local/lib/R/site-library      1.0.1
-listenv               listenv /usr/local/lib/R/site-library      0.8.0
-locfit                 locfit /usr/local/lib/R/site-library    1.5-9.5
-lubridate           lubridate /usr/local/lib/R/site-library      1.8.0
-magrittr             magrittr /usr/local/lib/R/site-library      2.0.2
-maptools             maptools /usr/local/lib/R/site-library      1.1-3
-markdown             markdown /usr/local/lib/R/site-library        1.1
-MatrixModels     MatrixModels /usr/local/lib/R/site-library      0.5-0
-matrixStats       matrixStats /usr/local/lib/R/site-library     0.61.0
-memoise               memoise /usr/local/lib/R/site-library      2.0.1
-mime                     mime /usr/local/lib/R/site-library       0.12
-minqa                   minqa /usr/local/lib/R/site-library      1.2.4
-mockery               mockery /usr/local/lib/R/site-library      0.4.3
-modelr                 modelr /usr/local/lib/R/site-library      0.1.8
-munsell               munsell /usr/local/lib/R/site-library      0.5.0
-mvtnorm               mvtnorm /usr/local/lib/R/site-library      1.1-3
-numDeriv             numDeriv /usr/local/lib/R/site-library 2016.8-1.1
-openssl               openssl /usr/local/lib/R/site-library      2.0.0
-openxlsx             openxlsx /usr/local/lib/R/site-library      4.2.5
-parallelly         parallelly /usr/local/lib/R/site-library     1.30.0
-pheatmap             pheatmap /usr/local/lib/R/site-library     1.0.12
-pillar                 pillar /usr/local/lib/R/site-library      1.7.0
-pkgbuild             pkgbuild /usr/local/lib/R/site-library      1.3.1
-pkgconfig           pkgconfig /usr/local/lib/R/site-library      2.0.3
-pkgload               pkgload /usr/local/lib/R/site-library      1.2.4
-plogr                   plogr /usr/local/lib/R/site-library      0.2.0
-plyr                     plyr /usr/local/lib/R/site-library      1.8.6
-png                       png /usr/local/lib/R/site-library      0.1-7
-praise                 praise /usr/local/lib/R/site-library      1.0.0
-prettyGraphs     prettyGraphs /usr/local/lib/R/site-library      2.1.6
-prettyunits       prettyunits /usr/local/lib/R/site-library      1.1.1
-processx             processx /usr/local/lib/R/site-library      3.5.2
-progress             progress /usr/local/lib/R/site-library      1.2.2
-promises             promises /usr/local/lib/R/site-library    1.2.0.1
-ps                         ps /usr/local/lib/R/site-library      1.6.0
-pspearman           pspearman /usr/local/lib/R/site-library      0.3-0
-purrr                   purrr /usr/local/lib/R/site-library      0.3.4
-quantreg             quantreg /usr/local/lib/R/site-library       5.88
-R.methodsS3       R.methodsS3 /usr/local/lib/R/site-library      1.8.1
-R.oo                     R.oo /usr/local/lib/R/site-library     1.24.0
-R.utils               R.utils /usr/local/lib/R/site-library     2.11.0
-R6                         R6 /usr/local/lib/R/site-library      2.5.1
-rappdirs             rappdirs /usr/local/lib/R/site-library      0.3.3
-rcmdcheck           rcmdcheck /usr/local/lib/R/site-library      1.4.0
-RColorBrewer     RColorBrewer /usr/local/lib/R/site-library      1.1-2
-Rcpp                     Rcpp /usr/local/lib/R/site-library      1.0.8
-RcppArmadillo   RcppArmadillo /usr/local/lib/R/site-library 0.10.8.1.0
-RcppEigen           RcppEigen /usr/local/lib/R/site-library  0.3.3.9.1
-RcppTOML             RcppTOML /usr/local/lib/R/site-library      0.1.7
-RCurl                   RCurl /usr/local/lib/R/site-library   1.98-1.6
-readr                   readr /usr/local/lib/R/site-library      2.1.2
-readxl                 readxl /usr/local/lib/R/site-library      1.3.1
-rematch               rematch /usr/local/lib/R/site-library      1.0.1
-rematch2             rematch2 /usr/local/lib/R/site-library      2.1.2
-remotes               remotes /usr/local/lib/R/site-library      2.4.2
-reprex                 reprex /usr/local/lib/R/site-library      2.0.1
-reshape               reshape /usr/local/lib/R/site-library      0.8.8
-reshape2             reshape2 /usr/local/lib/R/site-library      1.4.4
-reticulate         reticulate /usr/local/lib/R/site-library       1.24
-rex                       rex /usr/local/lib/R/site-library      1.2.1
-rio                       rio /usr/local/lib/R/site-library     0.5.29
-rlang                   rlang /usr/local/lib/R/site-library      1.0.2
-rmarkdown           rmarkdown /usr/local/lib/R/site-library       2.12
-roxygen2             roxygen2 /usr/local/lib/R/site-library      7.1.2
-rprojroot           rprojroot /usr/local/lib/R/site-library      2.0.2
-RSQLite               RSQLite /usr/local/lib/R/site-library     2.2.10
-rstudioapi         rstudioapi /usr/local/lib/R/site-library       0.13
-rversions           rversions /usr/local/lib/R/site-library      2.1.1
-rvest                   rvest /usr/local/lib/R/site-library      1.0.2
-sass                     sass /usr/local/lib/R/site-library      0.4.0
-scales                 scales /usr/local/lib/R/site-library      1.1.1
-selectr               selectr /usr/local/lib/R/site-library      0.4-2
-sessioninfo       sessioninfo /usr/local/lib/R/site-library      1.2.2
-snow                     snow /usr/local/lib/R/site-library      0.4-4
-snowfall             snowfall /usr/local/lib/R/site-library   1.84-6.1
-sp                         sp /usr/local/lib/R/site-library      1.4-6
-SparseM               SparseM /usr/local/lib/R/site-library       1.81
-statmod               statmod /usr/local/lib/R/site-library     1.4.36
-stringi               stringi /usr/local/lib/R/site-library      1.7.6
-stringr               stringr /usr/local/lib/R/site-library      1.4.0
-SuppDists           SuppDists /usr/local/lib/R/site-library    1.1-9.7
-svglite               svglite /usr/local/lib/R/site-library      2.1.0
-sys                       sys /usr/local/lib/R/site-library        3.4
-systemfonts       systemfonts /usr/local/lib/R/site-library      1.0.4
-testthat             testthat /usr/local/lib/R/site-library      3.1.2
-tibble                 tibble /usr/local/lib/R/site-library      3.1.6
-tidyr                   tidyr /usr/local/lib/R/site-library      1.2.0
-tidyselect         tidyselect /usr/local/lib/R/site-library      1.1.2
-tidyverse           tidyverse /usr/local/lib/R/site-library      1.3.1
-tinytex               tinytex /usr/local/lib/R/site-library       0.37
-tzdb                     tzdb /usr/local/lib/R/site-library      0.2.0
-usethis               usethis /usr/local/lib/R/site-library      2.1.5
-utf8                     utf8 /usr/local/lib/R/site-library      1.2.2
-uuid                     uuid /usr/local/lib/R/site-library      1.0-3
-vctrs                   vctrs /usr/local/lib/R/site-library      0.3.8
-viridisLite       viridisLite /usr/local/lib/R/site-library      0.4.0
-vroom                   vroom /usr/local/lib/R/site-library      1.5.7
-waldo                   waldo /usr/local/lib/R/site-library      0.3.1
-webshot               webshot /usr/local/lib/R/site-library      0.5.2
-whisker               whisker /usr/local/lib/R/site-library        0.4
-withr                   withr /usr/local/lib/R/site-library      2.5.0
-xfun                     xfun /usr/local/lib/R/site-library       0.30
-XML                       XML /usr/local/lib/R/site-library   3.99-0.9
-xml2                     xml2 /usr/local/lib/R/site-library      1.3.3
-xopen                   xopen /usr/local/lib/R/site-library      1.0.0
-xtable                 xtable /usr/local/lib/R/site-library      1.8-4
-yaml                     yaml /usr/local/lib/R/site-library      2.3.5
-zip                       zip /usr/local/lib/R/site-library      2.2.0
-littler               littler       /usr/lib/R/site-library     0.3.15
-base                     base            /usr/lib/R/library      4.1.2
-boot                     boot            /usr/lib/R/library     1.3-28
-class                   class            /usr/lib/R/library     7.3-20
-cluster               cluster            /usr/lib/R/library      2.1.2
-codetools           codetools            /usr/lib/R/library     0.2-18
-compiler             compiler            /usr/lib/R/library      4.1.2
-datasets             datasets            /usr/lib/R/library      4.1.2
-foreign               foreign            /usr/lib/R/library     0.8-82
-graphics             graphics            /usr/lib/R/library      4.1.2
-grDevices           grDevices            /usr/lib/R/library      4.1.2
-grid                     grid            /usr/lib/R/library      4.1.2
-KernSmooth         KernSmooth            /usr/lib/R/library    2.23-20
-lattice               lattice            /usr/lib/R/library    0.20-45
-MASS                     MASS            /usr/lib/R/library     7.3-55
-Matrix                 Matrix            /usr/lib/R/library      1.4-0
-methods               methods            /usr/lib/R/library      4.1.2
-mgcv                     mgcv            /usr/lib/R/library     1.8-38
-nlme                     nlme            /usr/lib/R/library    3.1-155
-nnet                     nnet            /usr/lib/R/library     7.3-17
-parallel             parallel            /usr/lib/R/library      4.1.2
-rpart                   rpart            /usr/lib/R/library     4.1.16
-spatial               spatial            /usr/lib/R/library     7.3-15
-splines               splines            /usr/lib/R/library      4.1.2
-stats                   stats            /usr/lib/R/library      4.1.2
-stats4                 stats4            /usr/lib/R/library      4.1.2
-survival             survival            /usr/lib/R/library     3.2-13
-tcltk                   tcltk            /usr/lib/R/library      4.1.2
-tools                   tools            /usr/lib/R/library      4.1.2
-utils                   utils            /usr/lib/R/library      4.1.2
-                  Priority
-abind                 <NA>
-askpass               <NA>
-assertthat            <NA>
-backports             <NA>
-base64enc             <NA>
-BH                    <NA>
-BiocManager           <NA>
-bit                   <NA>
-bit64                 <NA>
-bitops                <NA>
-blob                  <NA>
-brew                  <NA>
-brio                  <NA>
-broom                 <NA>
-bslib                 <NA>
-cachem                <NA>
-Cairo                 <NA>
-callr                 <NA>
-carData               <NA>
-caTools               <NA>
-cellranger            <NA>
-cli                   <NA>
-clipr                 <NA>
-colorspace            <NA>
-commonmark            <NA>
-conquer               <NA>
-corrplot              <NA>
-covr                  <NA>
-cpp11                 <NA>
-crayon                <NA>
-credentials           <NA>
-crosstalk             <NA>
-curl                  <NA>
-data.table            <NA>
-DBI                   <NA>
-dbplyr                <NA>
-desc                  <NA>
-devtools              <NA>
-diffobj               <NA>
-digest                <NA>
-docopt                <NA>
-dplyr                 <NA>
-DT                    <NA>
-dtplyr                <NA>
-ellipsis              <NA>
-emmeans               <NA>
-estimability          <NA>
-evaluate              <NA>
-ExPosition            <NA>
-fansi                 <NA>
-farver                <NA>
-fastmap               <NA>
-forcats               <NA>
-formatR               <NA>
-fs                    <NA>
-futile.logger         <NA>
-futile.options        <NA>
-future                <NA>
-future.apply          <NA>
-gargle                <NA>
-generics              <NA>
-gert                  <NA>
-GGally                <NA>
-ggdendro              <NA>
-ggplot2               <NA>
-ggrepel               <NA>
-ggseqlogo             <NA>
-gh                    <NA>
-gitcreds              <NA>
-githubinstall         <NA>
-globals               <NA>
-glue                  <NA>
-googledrive           <NA>
-googlesheets4         <NA>
-gplots                <NA>
-gridExtra             <NA>
-gtable                <NA>
-gtools                <NA>
-haven                 <NA>
-here                  <NA>
-highr                 <NA>
-hms                   <NA>
-htmltools             <NA>
-htmlwidgets           <NA>
-httr                  <NA>
-ids                   <NA>
-ini                   <NA>
-isoband               <NA>
-jpeg                  <NA>
-jquerylib             <NA>
-jsonlite              <NA>
-kableExtra            <NA>
-knitr                 <NA>
-labeling              <NA>
-lambda.r              <NA>
-later                 <NA>
-lazyeval              <NA>
-lemon                 <NA>
-lifecycle             <NA>
-listenv               <NA>
-locfit                <NA>
-lubridate             <NA>
-magrittr              <NA>
-maptools              <NA>
-markdown              <NA>
-MatrixModels          <NA>
-matrixStats           <NA>
-memoise               <NA>
-mime                  <NA>
-minqa                 <NA>
-mockery               <NA>
-modelr                <NA>
-munsell               <NA>
-mvtnorm               <NA>
-numDeriv              <NA>
-openssl               <NA>
-openxlsx              <NA>
-parallelly            <NA>
-pheatmap              <NA>
-pillar                <NA>
-pkgbuild              <NA>
-pkgconfig             <NA>
-pkgload               <NA>
-plogr                 <NA>
-plyr                  <NA>
-png                   <NA>
-praise                <NA>
-prettyGraphs          <NA>
-prettyunits           <NA>
-processx              <NA>
-progress              <NA>
-promises              <NA>
-ps                    <NA>
-pspearman             <NA>
-purrr                 <NA>
-quantreg              <NA>
-R.methodsS3           <NA>
-R.oo                  <NA>
-R.utils               <NA>
-R6                    <NA>
-rappdirs              <NA>
-rcmdcheck             <NA>
-RColorBrewer          <NA>
-Rcpp                  <NA>
-RcppArmadillo         <NA>
-RcppEigen             <NA>
-RcppTOML              <NA>
-RCurl                 <NA>
-readr                 <NA>
-readxl                <NA>
-rematch               <NA>
-rematch2              <NA>
-remotes               <NA>
-reprex                <NA>
-reshape               <NA>
-reshape2              <NA>
-reticulate            <NA>
-rex                   <NA>
-rio                   <NA>
-rlang                 <NA>
-rmarkdown             <NA>
-roxygen2              <NA>
-rprojroot             <NA>
-RSQLite               <NA>
-rstudioapi            <NA>
-rversions             <NA>
-rvest                 <NA>
-sass                  <NA>
-scales                <NA>
-selectr               <NA>
-sessioninfo           <NA>
-snow                  <NA>
-snowfall              <NA>
-sp                    <NA>
-SparseM               <NA>
-statmod               <NA>
-stringi               <NA>
-stringr               <NA>
-SuppDists             <NA>
-svglite               <NA>
-sys                   <NA>
-systemfonts           <NA>
-testthat              <NA>
-tibble                <NA>
-tidyr                 <NA>
-tidyselect            <NA>
-tidyverse             <NA>
-tinytex               <NA>
-tzdb                  <NA>
-usethis               <NA>
-utf8                  <NA>
-uuid                  <NA>
-vctrs                 <NA>
-viridisLite           <NA>
-vroom                 <NA>
-waldo                 <NA>
-webshot               <NA>
-whisker               <NA>
-withr                 <NA>
-xfun                  <NA>
-XML                   <NA>
-xml2                  <NA>
-xopen                 <NA>
-xtable                <NA>
-yaml                  <NA>
-zip                   <NA>
-littler               <NA>
-base                  base
-boot           recommended
-class          recommended
-cluster        recommended
-codetools      recommended
-compiler              base
-datasets              base
-foreign        recommended
-graphics              base
-grDevices             base
-grid                  base
-KernSmooth     recommended
-lattice        recommended
-MASS           recommended
-Matrix         recommended
-methods               base
-mgcv           recommended
-nlme           recommended
-nnet           recommended
-parallel              base
-rpart          recommended
-spatial        recommended
-splines               base
-stats                 base
-stats4                base
-survival       recommended
-tcltk                 base
-tools                 base
-utils                 base
-
-
-
-
-================
-
-R PACKAGES NOT INSTALLED
-
-================
-
-
-
-
-SEE ALSO THE not_installed_r_packages.txt TABLE IN THE ROOT OF THE CONTAINER
-
-
-                   Name
-1              annotate
-2         AnnotationDbi
-3               Biobase
-4          BiocGenerics
-5          BiocParallel
-6           BiocVersion
-7            Biostrings
-8                   car
-9               CGHbase
-10              CGHcall
-11         DelayedArray
-12               DESeq2
-13              DNAcopy
-14                edgeR
-15           genefilter
-16          geneplotter
-17         GenomeInfoDb
-18     GenomeInfoDbData
-19        GenomicRanges
-20           HiCcompare
-21               impute
-22       InteractionSet
-23              IRanges
-24                limma
-25                 lme4
-26             lmerTest
-27               marray
-28       MatrixGenerics
-29               nloptr
-30             pbkrtest
-31              QDNAseq
-32                rhdf5
-33         rhdf5filters
-34             Rhdf5lib
-35              Rhtslib
-36            Rsamtools
-37            S4Vectors
-38 SummarizedExperiment
-39              XVector
-40             zlibbioc
-
-
-
-
-================
-
-apt-get autoremove
-
-================
-
-
-
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
-
-
-
-
-================
-
-apt-get clean
-
-================
-
-
-
-
-
-
-
-
-================
-
-rm
-
-================
-
-
-
-
-
-
-
-
-================
-
-LINUX PACKAGES INSTALLED
-
-================
-
-
-
-
-procps:
-  Installed: 2:3.3.16-1ubuntu2.3
-  Candidate: 2:3.3.16-1ubuntu2.3
-  Version table:
- *** 2:3.3.16-1ubuntu2.3 100
-        100 /var/lib/dpkg/status
-libfontconfig1-dev:
-  Installed: 2.13.1-2ubuntu3
-  Candidate: 2.13.1-2ubuntu3
-  Version table:
- *** 2.13.1-2ubuntu3 100
-        100 /var/lib/dpkg/status
-build-essential:
-  Installed: 12.8ubuntu1.1
-  Candidate: 12.8ubuntu1.1
-  Version table:
- *** 12.8ubuntu1.1 100
-        100 /var/lib/dpkg/status
-libcurl4-gnutls-dev:
-  Installed: 7.68.0-1ubuntu2.7
-  Candidate: 7.68.0-1ubuntu2.7
-  Version table:
- *** 7.68.0-1ubuntu2.7 100
-        100 /var/lib/dpkg/status
-libxml2-dev:
-  Installed: 2.9.10+dfsg-5ubuntu0.20.04.1
-  Candidate: 2.9.10+dfsg-5ubuntu0.20.04.1
-  Version table:
- *** 2.9.10+dfsg-5ubuntu0.20.04.1 100
-        100 /var/lib/dpkg/status
-libssl-dev:
-  Installed: 1.1.1f-1ubuntu2.11
-  Candidate: 1.1.1f-1ubuntu2.11
-  Version table:
- *** 1.1.1f-1ubuntu2.11 100
-        100 /var/lib/dpkg/status
-libgit2-dev:
-  Installed: 0.28.4+dfsg.1-2
-  Candidate: 0.28.4+dfsg.1-2
-  Version table:
- *** 0.28.4+dfsg.1-2 100
-        100 /var/lib/dpkg/status
-libcairo2-dev:
-  Installed: 1.16.0-4ubuntu1
-  Candidate: 1.16.0-4ubuntu1
-  Version table:
- *** 1.16.0-4ubuntu1 100
-        100 /var/lib/dpkg/status
-libxt-dev:
-  Installed: 1:1.1.5-1
-  Candidate: 1:1.1.5-1
-  Version table:
- *** 1:1.1.5-1 100
-        100 /var/lib/dpkg/status
diff --git a/R/v4.1.2/extended/v1.0/installed_r_packages.csv b/R/v4.1.2/extended/v1.0/installed_r_packages.csv
deleted file mode 100644
index 29f6169b6ec85f99844c10ffd5e41bb8b7d0251b..0000000000000000000000000000000000000000
--- a/R/v4.1.2/extended/v1.0/installed_r_packages.csv
+++ /dev/null
@@ -1,237 +0,0 @@
-Package;LibPath;Version;Priority;Depends;Imports;LinkingTo;Suggests;Enhances;License;License_is_FOSS;License_restricts_use;OS_type;MD5sum;NeedsCompilation;Built
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-tools;/usr/lib/R/library;4.1.2;base;NA;NA;NA;codetools, methods, xml2, curl, commonmark;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
-utils;/usr/lib/R/library;4.1.2;base;NA;NA;NA;methods, xml2, commonmark;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
diff --git a/R/v4.1.2/extended/v1.0/not_installed_r_packages.txt b/R/v4.1.2/extended/v1.0/not_installed_r_packages.txt
deleted file mode 100644
index fd4e7074546e97221b306350637a2b304ed84cb9..0000000000000000000000000000000000000000
--- a/R/v4.1.2/extended/v1.0/not_installed_r_packages.txt
+++ /dev/null
@@ -1,41 +0,0 @@
-Name
-annotate
-AnnotationDbi
-Biobase
-BiocGenerics
-BiocParallel
-BiocVersion
-Biostrings
-car
-CGHbase
-CGHcall
-DelayedArray
-DESeq2
-DNAcopy
-edgeR
-genefilter
-geneplotter
-GenomeInfoDb
-GenomeInfoDbData
-GenomicRanges
-HiCcompare
-impute
-InteractionSet
-IRanges
-limma
-lme4
-lmerTest
-marray
-MatrixGenerics
-nloptr
-pbkrtest
-QDNAseq
-rhdf5
-rhdf5filters
-Rhdf5lib
-Rhtslib
-Rsamtools
-S4Vectors
-SummarizedExperiment
-XVector
-zlibbioc
diff --git a/R/v4.1.2/extended/v1.1/Dockerfile b/R/v4.1.2/extended/v1.1/Dockerfile
new file mode 100644
index 0000000000000000000000000000000000000000..9e1c1fc48105c4be5e247e5f35eba5da810b3fba
--- /dev/null
+++ b/R/v4.1.2/extended/v1.1/Dockerfile
@@ -0,0 +1,199 @@
+#########################################################################
+##                                                                     ##
+##     Dockerfile                                                      ##
+##     R extended                                                      ##
+##                                                                     ##
+##     Gael A. Millot                                                  ##
+##     Bioinformatics and Biostatistics Hub                            ##
+##     Computational Biology Department                                ##
+##     Institut Pasteur Paris                                          ##
+##                                                                     ##
+#########################################################################
+
+
+
+# to see the log of the building:
+# sudo docker run -ti --entrypoint bash <IMAGE_NAME>
+# cat building.log
+
+# to export the log file of the image building from the container:
+# sudo docker images
+# sudo docker run -ti --entrypoint bash <IMAGE_NAME>
+# exit
+# sudo docker container ls -a # to get all the active containers
+# sudo docker cp <containerNAMES>:/building.log </host/path/target>
+# sudo docker cp <containerNAMES>:/not_installed_r_packages.txt </host/path/target>
+# sudo docker cp <containerNAMES>:/installed_r_packages.csv </host/path/target>
+
+
+
+FROM gmillot/r-base_v4.1.2:gitlab_v8.2
+# Warning: the name must be exactly what is written in the docker images interface, or sudo docker image ls. Here, the image is present locally, or distantly on the gmillot repo. Thus, gmillot/r-base:4.0.5 is correct.
+
+LABEL Gael.Millot=gael.millot@pasteur.fr
+LABEL gitlab.dockerfiles="https://gitlab.pasteur.fr/gmillot/dockerfiles"
+
+
+ENV APT_GET_LINUX_LIB="\
+    procps \
+    libfontconfig1-dev \
+    ghostscript \
+    lmodern \
+    pandoc \
+    pandoc-citeproc \
+    qpdf \
+    texinfo \
+    texlive-fonts-extra \
+    texlive-fonts-recommended \
+    texlive-latex-extra \
+    texlive-latex-recommended \
+    texlive-luatex \
+    texlive-plain-generic \
+    texlive-science \
+    texlive-xetex \
+    libpoppler-cpp-dev \
+"
+
+ENV APT_LINUX_LIB="\
+    build-essential \
+    libcurl4-gnutls-dev \
+    libxml2-dev \
+    libssl-dev \
+    libgit2-dev \
+    libcairo2-dev \
+    libxt-dev \
+"
+
+ENV CRANREPO="'http://cran.us.r-project.org'"
+
+ENV RLIB="\
+  'BiocManager' \
+  'devtools' \
+  'Cairo' \
+  'dplyr' \
+  'data.table' \
+  'gridExtra' \
+  'mgcv' \
+  'InteractionSet' \
+  'GenomicRanges' \
+  'IRanges' \
+  'BiocParallel' \
+  'QDNAseq' \
+  'GenomeInfoDbData' \
+  'ggplot2' \
+  'HiCcompare' \
+  'lubridate' \
+  'parallel' \
+  'reshape2' \
+  'binb' \
+  'linl' \
+  'pinp' \
+  'tint' \
+  'pdftools' \
+"
+
+
+
+# fun.warning.capture from fun_get_message() of the cute package.
+# I used a first loop because I cannot use array in dockerfiles.
+RUN echo "\n\n\n\n================\n\napt-get update\n\n================\n\n\n\n" > building.log \
+  && add-apt-repository -y ppa:cran/poppler \
+  && apt-get update \
+    | tee -a building.log ; echo "\n\n\n\n================\n\napt-get install\n\n================\n\n\n\n" >> building.log \
+  && apt-get install -y $APT_GET_LINUX_LIB \
+    | tee -a building.log ; echo "\n\n\n\n================\n\napt install\n\n================\n\n\n\n" >> building.log \
+  && apt -y install $APT_LINUX_LIB \
+    | tee -a building.log \
+  && RLIB_LENGTH=0 \
+  && for i2 in $RLIB ; do RLIB_LENGTH=$((RLIB_LENGTH+1)) ; done \
+  && COUNT=0 \
+  && for i2 in $RLIB ; do \
+    COUNT=$((COUNT+1)) ; \
+    Rscript --vanilla -e " \
+      options(warn = 1, verbose = TRUE) ; \
+      tempo <- file('building.log', open = 'a+b') ; \
+      sink(file = tempo, append = TRUE, type = 'message') ; \
+      fun.warning.capture <- function(expr){ \
+        W <- NULL ; \
+        w.handler <- function(w){ \
+          W <<- w ; \
+          invokeRestart('muffleWarning') \
+        } ; \
+        output <- list( \
+          value = suppressMessages(withCallingHandlers(tryCatch(expr, error = function(e){e}), warning = w.handler)),  \
+          warning = W \
+        ) ; \
+        return(if(is.null(output\$warning)){NULL}else{as.character(output\$warning)}) \
+      } ; \
+      message(paste0('\n\n\n\n================\n\nR PACKAGE INSTALLATION ', $COUNT, ' / ', $RLIB_LENGTH, ': ', $i2, '\n\n================\n\n\n\n')) ; \
+      if( ! ($i2 %in% c('ggplot2', 'SARTools'))){ \
+        tempo.warn <- fun.warning.capture(exp = install.packages(pkgs = $i2, lib = '/usr/local/lib/R/site-library', dependencies = NA, verbose = TRUE, repo = $CRANREPO)) ; \
+        message(paste0('\n\ntempo.warn: ', tempo.warn, '\n\n')) ; \
+        if( ! is.null(tempo.warn)){ \
+            BiocManager::install(pkgs = $i2, lib = '/usr/local/lib/R/site-library', dependencies = NA, verbose = TRUE, update = FALSE) \
+        } \
+      }else if($i2 == 'ggplot2'){ \
+        devtools::install_version(package = 'ggplot2', version = '3.3.3', lib = '/usr/local/lib/R/site-library', dependencies = NA, verbose = TRUE, repos = $CRANREPO) \
+      }else if($i2 == 'SARTools'){ \
+        devtools::install_github('PF2-pasteur-fr/SARTools', build_opts='--no-resave-data', lib = '/usr/local/lib/R/site-library', dependencies = NA, verbose = TRUE, upgrade = "always") \
+      } \
+    " ; \
+  done \
+  && Rscript --vanilla -e  " \
+    options(warn = 1, verbose = TRUE) ; \
+    args <- commandArgs(trailingOnly = TRUE) ; \
+    if(any(is.na(args))){ \
+        stop(paste0('\n\n================\n\nERROR IN plot_insertion.R\nTHE args OBJECT HAS NA\n\n================\n\n'), call. = FALSE) \
+    } ; \
+    tempo.arg.names <- c( \
+        'RLIB' \
+    ) ; \
+    if(length(args) != length(tempo.arg.names)){ \
+        stop(paste0('\n\n================\n\nERROR IN plot_insertion.R\nTHE NUMBER OF ELEMENTS IN args (', length(args),') IS DIFFERENT FROM THE NUMBER OF ELEMENTS IN tempo.arg.names (', length(tempo.arg.names),')\nargs:', paste0(args, collapse = ','), '\ntempo.arg.names:', paste0(tempo.arg.names, collapse = ','), '\n\n================\n\n'), call. = FALSE) \
+    } ; \
+    for(i1 in 1:length(tempo.arg.names)){ \
+        assign(tempo.arg.names[i1], args[i1]) \
+    } ; \
+    RLIB <- strsplit(RLIB, split = ',')[[1]] ; \
+    RLIB <- RLIB[RLIB != ''] ; \
+    if(file.exists('installed_r_packages.csv')){ \
+      file.remove('installed_r_packages.csv') \
+    } ; \
+    if(file.exists('not_installed_r_packages.txt')){ \
+      file.remove('not_installed_r_packages.txt') \
+    } ; \
+    tempo <- file('building.log', open = 'a+b') ; \
+    sink(file = tempo, append = TRUE, type = 'message') ; \
+    message(paste0('\n\n\n\n================\n\nR PACKAGES INSTALLED\n\n================\n\n\n\n')) ; \
+    message('SEE ALSO THE installed_r_packages.csv TABLE IN THE ROOT OF THE CONTAINER\n\n') ; \
+    capture.output(as.data.frame(installed.packages())[1:4], file = tempo, append = TRUE, type = 'output') ; \
+    df <- as.data.frame(installed.packages()) ; \
+    for (i2 in 1:length(df)){ \
+      df[, i2] <- gsub(x = df[, i2], replacement = '', pattern = '\n', fixed = TRUE) \
+    } ; \
+    write.table(x = df, file = 'installed_r_packages.csv', row.names = FALSE, col.names = TRUE, append = FALSE, quote = FALSE, sep = ';') ; \
+    message(paste0('\n\n\n\n================\n\nR PACKAGES NOT INSTALLED\n\n================\n\n\n\n')) ; \
+    df2 <- as.data.frame(RLIB[ ! RLIB %in% df[ , 'Package']]) ; \
+    if(nrow(df2) == 0){ \
+      message('ALL THE PACKAGES HAVE BEEN INSTALLED\n\n') \
+    }else{ \
+      message('SEE ALSO THE not_installed_r_packages.txt TABLE IN THE ROOT OF THE CONTAINER\n\n') ; \
+      names(df2) <- 'Name' ; \
+      capture.output(df2, file = tempo, append = TRUE, type = 'output') ; \
+      write.table(x = df2, file = 'not_installed_r_packages.txt', row.names = FALSE, col.names = TRUE, append = FALSE, quote = FALSE, sep = ';') ; \
+    } \
+  " $(echo "$RLIB" | sed 's/ \{1,\}/,/g' | sed "s/'//g") \
+  && echo "\n\n\n\n================\n\napt-get autoremove\n\n================\n\n\n\n" >> building.log \
+  && apt-get autoremove -y \
+    | tee -a building.log ; echo "\n\n\n\n================\n\napt-get clean\n\n================\n\n\n\n" >> building.log \
+  && apt-get clean \
+    | tee -a building.log ; echo "\n\n\n\n================\n\nrm\n\n================\n\n\n\n" >> building.log \
+  && rm -rf /var/lib/apt/lists/* \
+    | tee -a building.log \
+  && echo "\n\n\n\n================\n\nLINUX PACKAGES INSTALLED\n\n================\n\n\n\n" >> /building.log \
+  && apt-cache policy $APT_GET_LINUX_LIB $APT_LINUX_LIB \
+    >> /building.log
+
+# dependencies=NA means c("Depends", "Imports", "LinkingTo"). Do no use TRUE -> install suggesting packages which inflates tremendously the image.
+
+ENTRYPOINT ["/usr/bin/R"]
diff --git a/R/v4.1.2/extended/v1.1/building.log b/R/v4.1.2/extended/v1.1/building.log
new file mode 100644
index 0000000000000000000000000000000000000000..669c695d0896fcb635c619c92a00b47858332b07
--- /dev/null
+++ b/R/v4.1.2/extended/v1.1/building.log
@@ -0,0 +1,3639 @@
+
+
+
+
+================
+
+apt-get update
+
+================
+
+
+
+
+
+
+
+
+================
+
+apt-get install
+
+================
+
+
+
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+procps is already the newest version (2:3.3.16-1ubuntu2.3).
+The following additional packages will be installed:
+  dvisvgm fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius
+  fonts-adf-universalis fonts-cabin fonts-cantarell fonts-comfortaa
+  fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito
+  fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond
+  fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf
+  fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-baskerville
+  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
+  fonts-gfs-porson fonts-gfs-solomos fonts-go fonts-junicode fonts-lato
+  fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo
+  fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans
+  fonts-roboto-unhinted fonts-sil-gentium fonts-sil-gentium-basic
+  fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix fonts-texgyre
+  fonts-urw-base35 javascript-common libapache-pom-java libauthen-sasl-perl
+  libavahi-client3 libavahi-common-data libavahi-common3 libbibutils6
+  libcommons-logging-java libcommons-parent-java libcups2 libdata-dump-perl
+  libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1
+  libdrm2 libedit2 libencode-locale-perl libexpat1 libexpat1-dev
+  libfile-listing-perl libfont-afm-perl libfontbox-java libfontenc1
+  libfreetype-dev libfreetype6-dev libghc-pandoc-citeproc-data libgl1
+  libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgs9
+  libgs9-common libharfbuzz-icu0 libhtml-form-perl libhtml-format-perl
+  libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
+  libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
+  libhttp-message-perl libhttp-negotiate-perl libidn11 libijs-0.35
+  libio-html-perl libio-socket-ssl-perl libjbig2dec0 libjs-jquery libkpathsea6
+  liblcms2-2 libllvm12 liblwp-mediatypes-perl liblwp-protocol-https-perl
+  libmailtools-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl
+  libnspr4 libnss3 libopenjp2-7 libpciaccess0 libpdfbox-java libpoppler-cpp0v5
+  libpoppler-dev libpoppler97 libptexenc1 libqpdf26 libruby2.7
+  libsensors-config libsensors5 libsynctex2 libteckit0 libtexlua53
+  libtexluajit2 libtext-unidecode-perl libtimedate-perl libtry-tiny-perl
+  liburi-perl libutempter0 libuuid1 libvulkan1 libwayland-client0 libwoff1
+  libwww-perl libwww-robotrules-perl libx11-xcb1 libxaw7 libxcb-dri2-0
+  libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-shape0
+  libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxfixes3 libxi6 libxinerama1
+  libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl
+  libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl
+  libxml-sax-perl libxmu6 libxpm4 libxrandr2 libxshmfence1 libxtst6 libxv1
+  libxxf86dga1 libxxf86vm1 libzzip-0-13 mesa-vulkan-drivers netbase
+  pandoc-data perl-openssl-defaults poppler-data preview-latex-style rake ruby
+  ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc
+  ruby2.7 rubygems-integration t1utils tcl tcl8.6 teckit tex-common tex-gyre
+  texlive-base texlive-binaries texlive-fonts-extra-links texlive-lang-greek
+  texlive-latex-base texlive-pictures tipa tk tk8.6 uuid-dev x11-utils
+  xbitmaps xfonts-encodings xfonts-utils xterm
+Suggested packages:
+  fonts-noto fontforge ghostscript-x apache2 | lighttpd | httpd
+  libdigest-hmac-perl libgssapi-perl libavalon-framework-java
+  libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java
+  cups-common freetype2-doc liblcms2-utils libcrypt-ssleay-perl pciutils
+  lm-sensors libauthen-ntlm-perl libxml-sax-expatxs-perl context wkhtmltopdf
+  librsvg2-bin groff ghc nodejs php python libjs-mathjax node-katex
+  poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho
+  fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai
+  fonts-arphic-uming fonts-nanum ri ruby-dev bundler tcl-tclreadline debhelper
+  perl-tk xpdf | pdf-viewer xzdec cm-super texlive-fonts-extra-doc
+  texlive-fonts-recommended-doc texlive-latex-base-doc python3-pygments
+  icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl
+  texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pstricks
+  dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex
+  default-jre-headless texlive-science-doc mesa-utils xfonts-cyrillic
+Recommended packages:
+  uuid-runtime
+The following NEW packages will be installed:
+  dvisvgm fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius
+  fonts-adf-universalis fonts-cabin fonts-cantarell fonts-comfortaa
+  fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito
+  fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond
+  fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf
+  fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-baskerville
+  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
+  fonts-gfs-porson fonts-gfs-solomos fonts-go fonts-junicode fonts-lato
+  fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo
+  fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans
+  fonts-roboto-unhinted fonts-sil-gentium fonts-sil-gentium-basic
+  fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix fonts-texgyre
+  fonts-urw-base35 ghostscript javascript-common libapache-pom-java
+  libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3
+  libbibutils6 libcommons-logging-java libcommons-parent-java libcups2
+  libdata-dump-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2
+  libdrm-radeon1 libdrm2 libedit2 libencode-locale-perl libexpat1-dev
+  libfile-listing-perl libfont-afm-perl libfontbox-java libfontconfig1-dev
+  libfontenc1 libfreetype-dev libfreetype6-dev libghc-pandoc-citeproc-data
+  libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgs9
+  libgs9-common libharfbuzz-icu0 libhtml-form-perl libhtml-format-perl
+  libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
+  libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
+  libhttp-message-perl libhttp-negotiate-perl libidn11 libijs-0.35
+  libio-html-perl libio-socket-ssl-perl libjbig2dec0 libjs-jquery libkpathsea6
+  liblcms2-2 libllvm12 liblwp-mediatypes-perl liblwp-protocol-https-perl
+  libmailtools-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl
+  libnspr4 libnss3 libopenjp2-7 libpciaccess0 libpdfbox-java
+  libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev libpoppler97 libptexenc1
+  libqpdf26 libruby2.7 libsensors-config libsensors5 libsynctex2 libteckit0
+  libtexlua53 libtexluajit2 libtext-unidecode-perl libtimedate-perl
+  libtry-tiny-perl liburi-perl libutempter0 libvulkan1 libwayland-client0
+  libwoff1 libwww-perl libwww-robotrules-perl libx11-xcb1 libxaw7
+  libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0
+  libxcb-shape0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxfixes3 libxi6
+  libxinerama1 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl
+  libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl
+  libxml-sax-perl libxmu6 libxpm4 libxrandr2 libxshmfence1 libxtst6 libxv1
+  libxxf86dga1 libxxf86vm1 libzzip-0-13 lmodern mesa-vulkan-drivers netbase
+  pandoc pandoc-citeproc pandoc-data perl-openssl-defaults poppler-data
+  preview-latex-style qpdf rake ruby ruby-minitest ruby-net-telnet
+  ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration
+  t1utils tcl tcl8.6 teckit tex-common tex-gyre texinfo texlive-base
+  texlive-binaries texlive-fonts-extra texlive-fonts-extra-links
+  texlive-fonts-recommended texlive-lang-greek texlive-latex-base
+  texlive-latex-extra texlive-latex-recommended texlive-luatex
+  texlive-pictures texlive-plain-generic texlive-science texlive-xetex tipa tk
+  tk8.6 uuid-dev x11-utils xbitmaps xfonts-encodings xfonts-utils xterm
+The following packages will be upgraded:
+  libexpat1 libuuid1
+2 upgraded, 215 newly installed, 0 to remove and 91 not upgraded.
+Need to get 834 MB of archives.
+After this operation, 2,899 MB of additional disk space will be used.
+Get:1 http://archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1,805 kB]
+Get:2 http://archive.ubuntu.com/ubuntu focal/main amd64 fonts-lato all 2.0-2 [2,698 kB]
+Get:3 http://archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1,475 kB]
+Get:4 http://archive.ubuntu.com/ubuntu focal/universe amd64 tex-common all 6.13 [32.7 kB]
+Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuuid1 amd64 2.34-0.1ubuntu9.3 [19.9 kB]
+Get:6 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libexpat1 amd64 2.2.9-1ubuntu0.4 [74.4 kB]
+Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 netbase all 6.1 [13.1 kB]
+Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-common all 2.4.107-8ubuntu1~20.04.2 [5,396 B]
+Get:9 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm2 amd64 2.4.107-8ubuntu1~20.04.2 [34.1 kB]
+Get:10 http://archive.ubuntu.com/ubuntu focal/main amd64 libedit2 amd64 3.1-20191231-1 [87.0 kB]
+Get:11 http://archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6,333 kB]
+Get:12 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.5 [681 kB]
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+Unpacking texlive-xetex (2019.20200218-1) ...
+Selecting previously unselected package tk8.6.
+Preparing to unpack .../201-tk8.6_8.6.10-1_amd64.deb ...
+Unpacking tk8.6 (8.6.10-1) ...
+Selecting previously unselected package tk.
+Preparing to unpack .../202-tk_8.6.9+1_amd64.deb ...
+Unpacking tk (8.6.9+1) ...
+Selecting previously unselected package libglvnd0:amd64.
+Preparing to unpack .../203-libglvnd0_1.3.2-1~ubuntu0.20.04.2_amd64.deb ...
+Unpacking libglvnd0:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
+Selecting previously unselected package libglx0:amd64.
+Preparing to unpack .../204-libglx0_1.3.2-1~ubuntu0.20.04.2_amd64.deb ...
+Unpacking libglx0:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
+Selecting previously unselected package libgl1:amd64.
+Preparing to unpack .../205-libgl1_1.3.2-1~ubuntu0.20.04.2_amd64.deb ...
+Unpacking libgl1:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
+Selecting previously unselected package x11-utils.
+Preparing to unpack .../206-x11-utils_7.7+5_amd64.deb ...
+Unpacking x11-utils (7.7+5) ...
+Selecting previously unselected package xbitmaps.
+Preparing to unpack .../207-xbitmaps_1.1.1-2_all.deb ...
+Unpacking xbitmaps (1.1.1-2) ...
+Selecting previously unselected package xterm.
+Preparing to unpack .../208-xterm_353-1ubuntu1.20.04.2_amd64.deb ...
+Unpacking xterm (353-1ubuntu1.20.04.2) ...
+Selecting previously unselected package libauthen-sasl-perl.
+Preparing to unpack .../209-libauthen-sasl-perl_2.1600-1_all.deb ...
+Unpacking libauthen-sasl-perl (2.1600-1) ...
+Selecting previously unselected package libghc-pandoc-citeproc-data.
+Preparing to unpack .../210-libghc-pandoc-citeproc-data_0.15.0.1-1build4_all.deb ...
+Unpacking libghc-pandoc-citeproc-data (0.15.0.1-1build4) ...
+Selecting previously unselected package pandoc-citeproc.
+Preparing to unpack .../211-pandoc-citeproc_0.15.0.1-1build4_amd64.deb ...
+Unpacking pandoc-citeproc (0.15.0.1-1build4) ...
+Setting up libexpat1:amd64 (2.2.9-1ubuntu0.4) ...
+Setting up javascript-common (11) ...
+Setting up tk8.6 (8.6.10-1) ...
+Setting up libxcb-dri3-0:amd64 (1.14-2) ...
+Setting up liblcms2-2:amd64 (2.9-4) ...
+Setting up fonts-gfs-didot (1.1-6) ...
+Setting up fonts-gfs-artemisia (1.1-5) ...
+Setting up fonts-sil-gentium-basic (1.102-1) ...
+Setting up libx11-xcb1:amd64 (2:1.6.9-2ubuntu1.2) ...
+Setting up libpciaccess0:amd64 (0.16-0ubuntu1) ...
+Setting up fonts-cantarell (0.111-2) ...
+Setting up tcl8.6 (8.6.10+dfsg-1) ...
+Setting up libxmu6:amd64 (2:1.1.3-0ubuntu1) ...
+Setting up fonts-ebgaramond (0.016-1ubuntu1) ...
+Setting up libharfbuzz-icu0:amd64 (2.6.4-1ubuntu4) ...
+Setting up fonts-lato (2.0-2) ...
+Setting up fonts-junicode (1.002-2) ...
+Setting up libxcb-xfixes0:amd64 (1.14-2) ...
+Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ...
+Setting up libxpm4:amd64 (1:3.5.12-1) ...
+Setting up libqpdf26:amd64 (9.1.1-1ubuntu0.1) ...
+Setting up fonts-gfs-porson (1.1-6) ...
+Setting up libxi6:amd64 (2:1.7.10-0ubuntu1) ...
+Setting up libfont-afm-perl (1.20-2) ...
+Setting up libwoff1:amd64 (1.0.2-1build2) ...
+Setting up ruby-power-assert (1.1.7-1) ...
+Setting up libtexlua53:amd64 (2019.20190605.51237-3build2) ...
+Setting up libglvnd0:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
+Setting up fonts-adf-berenis (0.20190904-1.1) ...
+Setting up libxtst6:amd64 (2:1.2.3-1) ...
+Setting up libhtml-tagset-perl (3.20-4) ...
+Setting up libijs-0.35:amd64 (0.35-15) ...
+Setting up libauthen-sasl-perl (2.1600-1) ...
+Setting up libxcb-glx0:amd64 (1.14-2) ...
+Setting up libtexluajit2:amd64 (2019.20190605.51237-3build2) ...
+Setting up libfontbox-java (1:1.8.16-2) ...
+Setting up libedit2:amd64 (3.1-20191231-1) ...
+Setting up liblwp-mediatypes-perl (6.04-1) ...
+Setting up fonts-freefont-otf (20120503-10) ...
+Setting up libxcb-shape0:amd64 (1.14-2) ...
+Setting up libtry-tiny-perl (0.30-1) ...
+Setting up libsensors-config (1:3.6.0-2ubuntu1.1) ...
+Setting up libxxf86dga1:amd64 (2:1.1.5-0ubuntu1) ...
+Setting up perl-openssl-defaults:amd64 (4) ...
+Setting up fonts-freefont-ttf (20120503-10) ...
+Setting up fonts-gfs-solomos (1.1-5) ...
+Setting up libxml-namespacesupport-perl (1.12-1) ...
+Setting up fonts-comfortaa (3.001-3) ...
+Setting up libencode-locale-perl (1.05-1) ...
+Setting up rubygems-integration (1.16) ...
+Setting up libzzip-0-13:amd64 (0.13.62-3.2ubuntu1) ...
+Setting up fonts-sil-gentiumplus-compact (5.000-2) ...
+Setting up libxaw7:amd64 (2:1.0.13-1) ...
+Setting up libghc-pandoc-citeproc-data (0.15.0.1-1build4) ...
+Setting up fonts-roboto-unhinted (2:0~20170802-3) ...
+Setting up fonts-urw-base35 (20170801.1-3) ...
+Setting up fonts-open-sans (1.11-1) ...
+Setting up fonts-sil-gentiumplus (5.000-2) ...
+Setting up fonts-gfs-neohellenic (1.1-6) ...
+Setting up fonts-gfs-olga (1.1-5) ...
+Setting up fonts-oflb-asana-math (000.907-6) ...
+Setting up libxxf86vm1:amd64 (1:1.1.4-1build1) ...
+Setting up poppler-data (0.4.9-2) ...
+Setting up libfreetype-dev:amd64 (2.10.1-2ubuntu0.1) ...
+Setting up libxcb-present0:amd64 (1.14-2) ...
+Setting up fonts-crosextra-carlito (20130920-1) ...
+Setting up ruby-minitest (5.13.0-1) ...
+Setting up fonts-adf-accanthis (0.20190904-1.1) ...
+Setting up tex-common (6.13) ...
+update-language: texlive-base not installed and configured, doing nothing!
+Setting up fonts-sil-gentium (20081126:1.03-2) ...
+Setting up libxml-sax-base-perl (1.09-1) ...
+Setting up fonts-adf-universalis (0.20190904-1.1) ...
+Setting up libbibutils6 (6.2-1) ...
+Setting up libfontenc1:amd64 (1:1.1.4-0ubuntu1) ...
+Setting up libexpat1-dev:amd64 (2.2.9-1ubuntu0.4) ...
+Setting up fonts-stix (1.1.1-4) ...
+Setting up ruby-test-unit (3.3.5-1) ...
+Setting up libdata-dump-perl (1.23-1) ...
+Setting up libnspr4:amd64 (2:4.25-1) ...
+Setting up libxfixes3:amd64 (1:5.0.3-2) ...
+Setting up libxcb-sync1:amd64 (1.14-2) ...
+Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ...
+Setting up fonts-go (0~20170330-1) ...
+Setting up libidn11:amd64 (1.33-2.2ubuntu2) ...
+Setting up libteckit0:amd64 (2.5.8+ds2-5ubuntu2) ...
+Setting up uuid-dev:amd64 (2.34-0.1ubuntu9.3) ...
+Setting up libapache-pom-java (18-1) ...
+Setting up libavahi-common-data:amd64 (0.7-4ubuntu7.1) ...
+Setting up libllvm12:amd64 (1:12.0.0-3ubuntu1~20.04.5) ...
+Setting up qpdf (9.1.1-1ubuntu0.1) ...
+Setting up ruby-net-telnet (0.1.1-2) ...
+Setting up fonts-cabin (1.5-3) ...
+Setting up xfonts-encodings (1:1.0.5-0ubuntu1) ...
+Setting up t1utils (1.41-3) ...
+Setting up libxinerama1:amd64 (2:1.1.4-2) ...
+Setting up libxv1:amd64 (2:1.0.11-1) ...
+Setting up libio-html-perl (1.001-1) ...
+Setting up libxrandr2:amd64 (2:1.5.2-0ubuntu1) ...
+Setting up fonts-texgyre (20180621-3) ...
+Setting up libsensors5:amd64 (1:3.6.0-2ubuntu1.1) ...
+Setting up fonts-linuxlibertine (5.3.0-4) ...
+Setting up libglapi-mesa:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
+Setting up libkpathsea6:amd64 (2019.20190605.51237-3build2) ...
+Setting up libvulkan1:amd64 (1.2.131.2-1) ...
+Setting up libtimedate-perl (2.3200-1) ...
+Setting up fonts-croscore (20200323-1build1~ubuntu20.04.1) ...
+Setting up libutempter0:amd64 (1.1.6-4) ...
+Setting up libxcb-dri2-0:amd64 (1.14-2) ...
+Setting up fonts-dejavu-extra (2.37-1) ...
+Setting up fonts-gfs-baskerville (1.1-5) ...
+Setting up libxshmfence1:amd64 (1.3-1) ...
+Setting up libxcb-randr0:amd64 (1.14-2) ...
+Setting up tcl (8.6.9+1) ...
+Setting up fonts-gfs-complutum (1.1-6) ...
+Setting up fonts-crosextra-caladea (20130214-2) ...
+Setting up fonts-lmodern (2.004.5-6) ...
+Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ...
+Setting up netbase (6.1) ...
+Setting up fonts-ebgaramond-extra (0.016-1ubuntu1) ...
+Setting up fonts-lobster (2.0-2) ...
+Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ...
+Setting up libxkbfile1:amd64 (1:1.1.0-1) ...
+Setting up pandoc-data (2.5-3build2) ...
+Setting up libjs-jquery (3.3.1~dfsg-3) ...
+Setting up libtext-unidecode-perl (1.30-1) ...
+Setting up tk (8.6.9+1) ...
+Setting up libdrm-common (2.4.107-8ubuntu1~20.04.2) ...
+Setting up libxcomposite1:amd64 (1:0.4.5-1) ...
+Setting up fonts-adf-gillius (0.20190904-1.1) ...
+Setting up ruby-xmlrpc (0.3.0-2) ...
+Setting up fonts-noto-core (20200323-1build1~ubuntu20.04.1) ...
+Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ...
+Setting up liburi-perl (1.76-2) ...
+Setting up xbitmaps (1.1.1-2) ...
+Setting up libsynctex2:amd64 (2019.20190605.51237-3build2) ...
+Setting up libwayland-client0:amd64 (1.18.0-1) ...
+Setting up libnet-ssleay-perl (1.88-2ubuntu1) ...
+Setting up libgs9-common (9.50~dfsg-5ubuntu4.5) ...
+Setting up teckit (2.5.8+ds2-5ubuntu2) ...
+Setting up libhttp-date-perl (6.05-1) ...
+Setting up pandoc-citeproc (0.15.0.1-1build4) ...
+Setting up libfile-listing-perl (6.04-1) ...
+Setting up libpdfbox-java (1:1.8.16-2) ...
+Setting up preview-latex-style (11.91-2ubuntu2) ...
+Setting up libcommons-parent-java (43-1) ...
+Setting up libavahi-common3:amd64 (0.7-4ubuntu7.1) ...
+Setting up libcommons-logging-java (1.2-2) ...
+Setting up libnet-http-perl (6.19-1) ...
+Setting up libnss3:amd64 (2:3.49.1-1ubuntu1.7) ...
+Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ...
+Setting up xfonts-utils (1:7.7+6) ...
+Setting up libxml-sax-perl (1.02+dfsg-1) ...
+update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
+update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
+
+Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
+Setting up fonts-lobstertwo (2.0-2) ...
+Setting up libfreetype6-dev:amd64 (2.10.1-2ubuntu0.1) ...
+Setting up libptexenc1:amd64 (2019.20190605.51237-3build2) ...
+Setting up pandoc (2.5-3build2) ...
+Setting up texlive-fonts-extra-links (2019.202000218-1) ...
+Setting up libxml-libxml-perl (2.0134+dfsg-1build1) ...
+update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
+update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
+update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
+Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
+Setting up libwww-robotrules-perl (6.02-1) ...
+Setting up libdrm2:amd64 (2.4.107-8ubuntu1~20.04.2) ...
+Setting up texlive-binaries (2019.20190605.51237-3build2) ...
+update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
+update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
+update-alternatives: warning: skip creation of /usr/share/man/man1/bibtex.1.gz because associated file /usr/share/man/man1/bibtex.original.1.gz (of link group bibtex) doesn't exist
+Setting up lmodern (2.004.5-6) ...
+Setting up libhtml-parser-perl (3.72-5) ...
+Setting up xterm (353-1ubuntu1.20.04.2) ...
+update-alternatives: using /usr/bin/xterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
+update-alternatives: warning: skip creation of /usr/share/man/man1/x-terminal-emulator.1.gz because associated file /usr/share/man/man1/xterm.1.gz (of link group x-terminal-emulator) doesn't exist
+update-alternatives: using /usr/bin/lxterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
+update-alternatives: warning: skip creation of /usr/share/man/man1/x-terminal-emulator.1.gz because associated file /usr/share/man/man1/lxterm.1.gz (of link group x-terminal-emulator) doesn't exist
+Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ...
+Setting up texlive-base (2019.20200218-1) ...
+tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
+tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
+tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
+tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
+tl-paper: setting paper size for dvipdfmx to letter: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
+tl-paper: setting paper size for dvips to letter: /var/lib/texmf/dvips/config/config-paper.ps
+tl-paper: setting paper size for pdftex to letter: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
+tl-paper: setting paper size for xdvi to letter: /var/lib/texmf/xdvi/XDvi-paper
+Setting up tex-gyre (20180621-3) ...
+Setting up libavahi-client3:amd64 (0.7-4ubuntu7.1) ...
+Setting up libio-socket-ssl-perl (2.067-1) ...
+Setting up libhttp-message-perl (6.22-1) ...
+Setting up libdrm-amdgpu1:amd64 (2.4.107-8ubuntu1~20.04.2) ...
+Setting up libhtml-form-perl (6.07-1) ...
+Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ...
+Setting up mesa-vulkan-drivers:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
+Setting up libhttp-negotiate-perl (6.01-1) ...
+Setting up libdrm-nouveau2:amd64 (2.4.107-8ubuntu1~20.04.2) ...
+Setting up libfontconfig1-dev:amd64 (2.13.1-2ubuntu3) ...
+Setting up libhttp-cookies-perl (6.08-1) ...
+Setting up texlive-luatex (2019.20200218-1) ...
+Setting up libdrm-radeon1:amd64 (2.4.107-8ubuntu1~20.04.2) ...
+Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ...
+Setting up libhtml-tree-perl (5.07-2) ...
+Setting up libdrm-intel1:amd64 (2.4.107-8ubuntu1~20.04.2) ...
+Setting up libgl1-mesa-dri:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
+Setting up texlive-plain-generic (2019.202000218-1) ...
+Setting up texlive-lang-greek (2019.20200218-1) ...
+Setting up libhtml-format-perl (2.12-1) ...
+Setting up libnet-smtp-ssl-perl (1.04-1) ...
+Setting up texlive-latex-base (2019.20200218-1) ...
+Setting up libmailtools-perl (2.21-1) ...
+Setting up texlive-fonts-extra (2019.202000218-1) ...
+Setting up texlive-latex-recommended (2019.20200218-1) ...
+Setting up texinfo (6.7.0.dfsg.2-5) ...
+Running mktexlsr. This may take some time. ... done.
+Setting up texlive-pictures (2019.20200218-1) ...
+Setting up libcups2:amd64 (2.3.1-9ubuntu1.2) ...
+Setting up libhttp-daemon-perl (6.06-1) ...
+Setting up texlive-fonts-recommended (2019.20200218-1) ...
+Setting up tipa (2:1.3-20) ...
+Regenerating '/var/lib/texmf/fmtutil.cnf-DEBIAN'... done.
+Regenerating '/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST'... done.
+update-fmtutil has updated the following file(s):
+	/var/lib/texmf/fmtutil.cnf-DEBIAN
+	/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST
+If you want to activate the changes in the above file(s),
+you should run fmtutil-sys or fmtutil.
+Setting up libglx-mesa0:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
+Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.5) ...
+Setting up libglx0:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
+Setting up texlive-science (2019.202000218-1) ...
+Setting up dvisvgm (2.8.1-1build1) ...
+Setting up texlive-latex-extra (2019.202000218-1) ...
+Setting up ghostscript (9.50~dfsg-5ubuntu4.5) ...
+Setting up libgl1:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
+Setting up x11-utils (7.7+5) ...
+Setting up texlive-xetex (2019.20200218-1) ...
+Setting up ruby (1:2.7+1) ...
+Setting up rake (13.0.1-4) ...
+Setting up liblwp-protocol-https-perl (6.07-2ubuntu2) ...
+Setting up libwww-perl (6.43-1) ...
+Setting up libruby2.7:amd64 (2.7.0-5ubuntu1.7) ...
+Setting up libxml-parser-perl (2.46-1) ...
+Setting up ruby2.7 (2.7.0-5ubuntu1.7) ...
+Setting up libxml-sax-expat-perl (0.51-1) ...
+update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50...
+update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
+Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
+Processing triggers for fontconfig (2.13.1-2ubuntu3) ...
+Processing triggers for mime-support (3.64ubuntu1) ...
+Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
+Processing triggers for tex-common (6.13) ...
+Running updmap-sys. This may take some time... done.
+Running mktexlsr /var/lib/texmf ... done.
+Building format(s) --all.
+	This may take some time... done.
+
+
+
+
+================
+
+apt install
+
+================
+
+
+
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+build-essential is already the newest version (12.8ubuntu1.1).
+build-essential set to manually installed.
+The following additional packages will be installed:
+  libblkid-dev libblkid1 libcairo-gobject2 libcairo-script-interpreter2
+  libcurl3-gnutls libffi-dev libgcrypt20-dev libgit2-28 libglib2.0-dev
+  libglib2.0-dev-bin libgpg-error-dev libhttp-parser-dev libhttp-parser2.9
+  libice-dev liblzo2-2 libmbedcrypto3 libmbedtls-dev libmbedtls12
+  libmbedx509-0 libmount-dev libmount1 libpixman-1-dev libpthread-stubs0-dev
+  libselinux1-dev libsepol1 libsepol1-dev libsm-dev libssh2-1 libssh2-1-dev
+  libssl1.1 libx11-dev libxau-dev libxcb-render0-dev libxcb-shm0-dev
+  libxcb1-dev libxdmcp-dev libxext-dev libxml2 libxrender-dev
+  python3-distutils python3-lib2to3 x11proto-core-dev x11proto-dev
+  x11proto-xext-dev xorg-sgml-doctools xtrans-dev
+Suggested packages:
+  libcairo2-doc libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev
+  libldap2-dev librtmp-dev libgcrypt20-doc libgirepository1.0-dev
+  libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils
+  libice-doc libmbedtls-doc libsm-doc libssl-doc libx11-doc libxcb-doc
+  libxext-doc libxt-doc
+The following NEW packages will be installed:
+  libblkid-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2-dev
+  libcurl3-gnutls libcurl4-gnutls-dev libffi-dev libgcrypt20-dev libgit2-28
+  libgit2-dev libglib2.0-dev libglib2.0-dev-bin libgpg-error-dev
+  libhttp-parser-dev libhttp-parser2.9 libice-dev liblzo2-2 libmbedcrypto3
+  libmbedtls-dev libmbedtls12 libmbedx509-0 libmount-dev libpixman-1-dev
+  libpthread-stubs0-dev libselinux1-dev libsepol1-dev libsm-dev libssh2-1
+  libssh2-1-dev libssl-dev libx11-dev libxau-dev libxcb-render0-dev
+  libxcb-shm0-dev libxcb1-dev libxdmcp-dev libxext-dev libxml2-dev
+  libxrender-dev libxt-dev python3-distutils python3-lib2to3 x11proto-core-dev
+  x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev
+The following packages will be upgraded:
+  libblkid1 libmount1 libsepol1 libssl1.1 libxml2
+5 upgraded, 47 newly installed, 0 to remove and 86 not upgraded.
+Need to get 13.9 MB of archives.
+After this operation, 55.1 MB of additional disk space will be used.
+Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libblkid1 amd64 2.34-0.1ubuntu9.3 [136 kB]
+Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libmount1 amd64 2.34-0.1ubuntu9.3 [149 kB]
+Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libsepol1 amd64 3.0-1ubuntu0.1 [252 kB]
+Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libssl1.1 amd64 1.1.1f-1ubuntu2.15 [1,321 kB]
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+R PACKAGE INSTALLATION 3 / 23: Cairo
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+
+
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+R PACKAGE INSTALLATION 5 / 23: data.table
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+R PACKAGE INSTALLATION 6 / 23: gridExtra
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+================
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+R PACKAGE INSTALLATION 8 / 23: InteractionSet
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+================
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+Content type 'application/x-gzip' length 11193674 bytes (10.7 MB)
+==================================================
+downloaded 10.7 MB
+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/GenomicRanges_1.46.1.tar.gz'
+Content type 'application/x-gzip' length 1171939 bytes (1.1 MB)
+==================================================
+downloaded 1.1 MB
+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/SummarizedExperiment_1.24.0.tar.gz'
+Content type 'application/x-gzip' length 1524667 bytes (1.5 MB)
+==================================================
+downloaded 1.5 MB
+
+trying URL 'https://cloud.r-project.org/src/contrib/Rcpp_1.0.8.3.tar.gz'
+Content type 'application/x-gzip' length 3086192 bytes (2.9 MB)
+==================================================
+downloaded 2.9 MB
+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/BiocGenerics_0.40.0.tar.gz'
+Content type 'application/x-gzip' length 45969 bytes (44 KB)
+==================================================
+downloaded 44 KB
+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/S4Vectors_0.32.4.tar.gz'
+Content type 'application/x-gzip' length 668558 bytes (652 KB)
+==================================================
+downloaded 652 KB
+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/IRanges_2.28.0.tar.gz'
+Content type 'application/x-gzip' length 455647 bytes (444 KB)
+==================================================
+downloaded 444 KB
+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/GenomeInfoDb_1.30.1.tar.gz'
+Content type 'application/x-gzip' length 3457147 bytes (3.3 MB)
+==================================================
+downloaded 3.3 MB
+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/BiocVersion_3.14.0.tar.gz'
+Content type 'application/x-gzip' length 969 bytes
+==================================================
+downloaded 969 bytes
+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/InteractionSet_1.22.0.tar.gz'
+Content type 'application/x-gzip' length 385508 bytes (376 KB)
+==================================================
+downloaded 376 KB
+
+foundpkgs: zlibbioc, matrixStats, bitops, XVector, MatrixGenerics, Biobase, DelayedArray, RCurl, GenomeInfoDbData, GenomicRanges, SummarizedExperiment, Rcpp, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, BiocVersion, InteractionSet, /tmp/Rtmpz5cPoe/downloaded_packages/zlibbioc_1.40.0.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/matrixStats_0.62.0.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/bitops_1.0-7.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/XVector_0.34.0.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/MatrixGenerics_1.6.0.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/Biobase_2.54.0.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/DelayedArray_0.20.0.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/RCurl_1.98-1.7.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/GenomeInfoDbData_1.2.7.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/GenomicRanges_1.46.1.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/SummarizedExperiment_1.24.0.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/Rcpp_1.0.8.3.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/BiocGenerics_0.40.0.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/S4Vectors_0.32.4.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/IRanges_2.28.0.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/GenomeInfoDb_1.30.1.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/BiocVersion_3.14.0.tar.gz, /tmp/Rtmpz5cPoe/downloaded_packages/InteractionSet_1.22.0.tar.gz
+files: /tmp/Rtmpz5cPoe/downloaded_packages/zlibbioc_1.40.0.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/matrixStats_0.62.0.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/bitops_1.0-7.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/XVector_0.34.0.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/MatrixGenerics_1.6.0.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/Biobase_2.54.0.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/DelayedArray_0.20.0.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/RCurl_1.98-1.7.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/GenomeInfoDbData_1.2.7.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/GenomicRanges_1.46.1.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/SummarizedExperiment_1.24.0.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/Rcpp_1.0.8.3.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/BiocGenerics_0.40.0.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/S4Vectors_0.32.4.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/IRanges_2.28.0.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/GenomeInfoDb_1.30.1.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/BiocVersion_3.14.0.tar.gz, 
+	/tmp/Rtmpz5cPoe/downloaded_packages/InteractionSet_1.22.0.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/zlibbioc_1.40.0.tar.gz''
+2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/matrixStats_0.62.0.tar.gz''
+3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/bitops_1.0-7.tar.gz''
+4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/GenomeInfoDbData_1.2.7.tar.gz''
+5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/Rcpp_1.0.8.3.tar.gz''
+6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/BiocGenerics_0.40.0.tar.gz''
+7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/BiocVersion_3.14.0.tar.gz''
+8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/MatrixGenerics_1.6.0.tar.gz''
+9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/Biobase_2.54.0.tar.gz''
+10): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/RCurl_1.98-1.7.tar.gz''
+11): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/S4Vectors_0.32.4.tar.gz''
+12): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/IRanges_2.28.0.tar.gz''
+13): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/XVector_0.34.0.tar.gz''
+14): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/DelayedArray_0.20.0.tar.gz''
+15): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/GenomeInfoDb_1.30.1.tar.gz''
+16): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/GenomicRanges_1.46.1.tar.gz''
+17): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/SummarizedExperiment_1.24.0.tar.gz''
+18): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz5cPoe/downloaded_packages/InteractionSet_1.22.0.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/Rtmpz5cPoe/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 9 / 23: GenomicRanges
+
+================
+
+
+
+
+
+
+tempo.warn: simpleWarning: package â€˜GenomicRangesâ€™ is not available for this version of R
+
+A version of this package for your version of R might be available elsewhere,
+see the ideas at
+https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
+
+
+
+Bioconductor version 3.14 (BiocManager 1.30.18), R 4.1.2 (2021-11-01)
+Warning: package(s) not installed when version(s) same as current; use `force = TRUE` to
+  re-install: 'GenomicRanges'
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 10 / 23: IRanges
+
+================
+
+
+
+
+
+
+tempo.warn: simpleWarning: package â€˜IRangesâ€™ is not available for this version of R
+
+A version of this package for your version of R might be available elsewhere,
+see the ideas at
+https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
+
+
+
+Bioconductor version 3.14 (BiocManager 1.30.18), R 4.1.2 (2021-11-01)
+Warning: package(s) not installed when version(s) same as current; use `force = TRUE` to
+  re-install: 'IRanges'
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 11 / 23: BiocParallel
+
+================
+
+
+
+
+
+
+tempo.warn: simpleWarning: package â€˜BiocParallelâ€™ is not available for this version of R
+
+A version of this package for your version of R might be available elsewhere,
+see the ideas at
+https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
+
+
+
+Bioconductor version 3.14 (BiocManager 1.30.18), R 4.1.2 (2021-11-01)
+Installing package(s) 'BiocParallel'
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+also installing the dependencies â€˜formatRâ€™, â€˜lambda.râ€™, â€˜futile.optionsâ€™, â€˜futile.loggerâ€™, â€˜snowâ€™, â€˜BHâ€™
+
+trying URL 'https://cloud.r-project.org/src/contrib/formatR_1.12.tar.gz'
+Content type 'application/x-gzip' length 95944 bytes (93 KB)
+==================================================
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+
+trying URL 'https://cloud.r-project.org/src/contrib/lambda.r_1.2.4.tar.gz'
+Content type 'application/x-gzip' length 25666 bytes (25 KB)
+==================================================
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+
+trying URL 'https://cloud.r-project.org/src/contrib/futile.options_1.0.1.tar.gz'
+Content type 'application/x-gzip' length 3919 bytes
+==================================================
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+
+trying URL 'https://cloud.r-project.org/src/contrib/futile.logger_1.4.3.tar.gz'
+Content type 'application/x-gzip' length 17456 bytes (17 KB)
+==================================================
+downloaded 17 KB
+
+trying URL 'https://cloud.r-project.org/src/contrib/snow_0.4-4.tar.gz'
+Content type 'application/x-gzip' length 20464 bytes (19 KB)
+==================================================
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+
+trying URL 'https://cloud.r-project.org/src/contrib/BH_1.78.0-0.tar.gz'
+Content type 'application/x-gzip' length 13269768 bytes (12.7 MB)
+==================================================
+downloaded 12.7 MB
+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/BiocParallel_1.28.3.tar.gz'
+Content type 'application/x-gzip' length 883999 bytes (863 KB)
+==================================================
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+
+foundpkgs: formatR, lambda.r, futile.options, futile.logger, snow, BH, BiocParallel, /tmp/Rtmp6nJXrd/downloaded_packages/formatR_1.12.tar.gz, /tmp/Rtmp6nJXrd/downloaded_packages/lambda.r_1.2.4.tar.gz, /tmp/Rtmp6nJXrd/downloaded_packages/futile.options_1.0.1.tar.gz, /tmp/Rtmp6nJXrd/downloaded_packages/futile.logger_1.4.3.tar.gz, /tmp/Rtmp6nJXrd/downloaded_packages/snow_0.4-4.tar.gz, /tmp/Rtmp6nJXrd/downloaded_packages/BH_1.78.0-0.tar.gz, /tmp/Rtmp6nJXrd/downloaded_packages/BiocParallel_1.28.3.tar.gz
+files: /tmp/Rtmp6nJXrd/downloaded_packages/formatR_1.12.tar.gz, 
+	/tmp/Rtmp6nJXrd/downloaded_packages/lambda.r_1.2.4.tar.gz, 
+	/tmp/Rtmp6nJXrd/downloaded_packages/futile.options_1.0.1.tar.gz, 
+	/tmp/Rtmp6nJXrd/downloaded_packages/futile.logger_1.4.3.tar.gz, 
+	/tmp/Rtmp6nJXrd/downloaded_packages/snow_0.4-4.tar.gz, 
+	/tmp/Rtmp6nJXrd/downloaded_packages/BH_1.78.0-0.tar.gz, 
+	/tmp/Rtmp6nJXrd/downloaded_packages/BiocParallel_1.28.3.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6nJXrd/downloaded_packages/formatR_1.12.tar.gz''
+2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6nJXrd/downloaded_packages/futile.options_1.0.1.tar.gz''
+3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6nJXrd/downloaded_packages/snow_0.4-4.tar.gz''
+4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6nJXrd/downloaded_packages/BH_1.78.0-0.tar.gz''
+5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6nJXrd/downloaded_packages/lambda.r_1.2.4.tar.gz''
+6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6nJXrd/downloaded_packages/futile.logger_1.4.3.tar.gz''
+7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6nJXrd/downloaded_packages/BiocParallel_1.28.3.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/Rtmp6nJXrd/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 12 / 23: QDNAseq
+
+================
+
+
+
+
+
+
+tempo.warn: simpleWarning: package â€˜QDNAseqâ€™ is not available for this version of R
+
+A version of this package for your version of R might be available elsewhere,
+see the ideas at
+https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
+
+
+
+Bioconductor version 3.14 (BiocManager 1.30.18), R 4.1.2 (2021-11-01)
+Installing package(s) 'QDNAseq'
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+also installing the dependencies â€˜limmaâ€™, â€˜listenvâ€™, â€˜parallellyâ€™, â€˜marrayâ€™, â€˜imputeâ€™, â€˜snowfallâ€™, â€˜R.ooâ€™, â€˜R.methodsS3â€™, â€˜Biostringsâ€™, â€˜Rhtslibâ€™, â€˜futureâ€™, â€˜globalsâ€™, â€˜CGHbaseâ€™, â€˜CGHcallâ€™, â€˜DNAcopyâ€™, â€˜R.utilsâ€™, â€˜Rsamtoolsâ€™, â€˜future.applyâ€™
+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/limma_3.50.3.tar.gz'
+Content type 'application/x-gzip' length 1559281 bytes (1.5 MB)
+==================================================
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+
+trying URL 'https://cloud.r-project.org/src/contrib/listenv_0.8.0.tar.gz'
+Content type 'application/x-gzip' length 36762 bytes (35 KB)
+==================================================
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+
+trying URL 'https://cloud.r-project.org/src/contrib/parallelly_1.32.0.tar.gz'
+Content type 'application/x-gzip' length 124712 bytes (121 KB)
+==================================================
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+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/marray_1.72.0.tar.gz'
+Content type 'application/x-gzip' length 5160434 bytes (4.9 MB)
+==================================================
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+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/impute_1.68.0.tar.gz'
+Content type 'application/x-gzip' length 641569 bytes (626 KB)
+==================================================
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+
+trying URL 'https://cloud.r-project.org/src/contrib/snowfall_1.84-6.1.tar.gz'
+Content type 'application/x-gzip' length 344407 bytes (336 KB)
+==================================================
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+
+trying URL 'https://cloud.r-project.org/src/contrib/R.oo_1.25.0.tar.gz'
+Content type 'application/x-gzip' length 384384 bytes (375 KB)
+==================================================
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+
+trying URL 'https://cloud.r-project.org/src/contrib/R.methodsS3_1.8.2.tar.gz'
+Content type 'application/x-gzip' length 24131 bytes (23 KB)
+==================================================
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+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Biostrings_2.62.0.tar.gz'
+Content type 'application/x-gzip' length 12645827 bytes (12.1 MB)
+==================================================
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+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Rhtslib_1.26.0.tar.gz'
+Content type 'application/x-gzip' length 1470165 bytes (1.4 MB)
+==================================================
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+
+trying URL 'https://cloud.r-project.org/src/contrib/future_1.26.1.tar.gz'
+Content type 'application/x-gzip' length 365509 bytes (356 KB)
+==================================================
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+
+trying URL 'https://cloud.r-project.org/src/contrib/globals_0.15.1.tar.gz'
+Content type 'application/x-gzip' length 33503 bytes (32 KB)
+==================================================
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+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/CGHbase_1.54.0.tar.gz'
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+==================================================
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+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/CGHcall_2.56.0.tar.gz'
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+==================================================
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+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/DNAcopy_1.68.0.tar.gz'
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+trying URL 'https://cloud.r-project.org/src/contrib/R.utils_2.12.0.tar.gz'
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+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Rsamtools_2.10.0.tar.gz'
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+trying URL 'https://cloud.r-project.org/src/contrib/future.apply_1.9.0.tar.gz'
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+Content type 'application/x-gzip' length 1057078 bytes (1.0 MB)
+==================================================
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+foundpkgs: limma, listenv, parallelly, marray, impute, snowfall, R.oo, R.methodsS3, Biostrings, Rhtslib, future, globals, CGHbase, CGHcall, DNAcopy, R.utils, Rsamtools, future.apply, QDNAseq, /tmp/RtmpeOIgqF/downloaded_packages/limma_3.50.3.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/listenv_0.8.0.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/parallelly_1.32.0.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/marray_1.72.0.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/impute_1.68.0.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/snowfall_1.84-6.1.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/R.oo_1.25.0.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/R.methodsS3_1.8.2.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/Biostrings_2.62.0.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/Rhtslib_1.26.0.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/future_1.26.1.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/globals_0.15.1.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/CGHbase_1.54.0.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/CGHcall_2.56.0.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/DNAcopy_1.68.0.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/R.utils_2.12.0.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/Rsamtools_2.10.0.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/future.apply_1.9.0.tar.gz, /tmp/RtmpeOIgqF/downloaded_packages/QDNAseq_1.30.0.tar.gz
+files: /tmp/RtmpeOIgqF/downloaded_packages/limma_3.50.3.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/listenv_0.8.0.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/parallelly_1.32.0.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/marray_1.72.0.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/impute_1.68.0.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/snowfall_1.84-6.1.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/R.oo_1.25.0.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/R.methodsS3_1.8.2.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/Biostrings_2.62.0.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/Rhtslib_1.26.0.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/future_1.26.1.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/globals_0.15.1.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/CGHbase_1.54.0.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/CGHcall_2.56.0.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/DNAcopy_1.68.0.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/R.utils_2.12.0.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/Rsamtools_2.10.0.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/future.apply_1.9.0.tar.gz, 
+	/tmp/RtmpeOIgqF/downloaded_packages/QDNAseq_1.30.0.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/limma_3.50.3.tar.gz''
+2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/listenv_0.8.0.tar.gz''
+3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/parallelly_1.32.0.tar.gz''
+4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/impute_1.68.0.tar.gz''
+5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/snowfall_1.84-6.1.tar.gz''
+6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/R.methodsS3_1.8.2.tar.gz''
+7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/Biostrings_2.62.0.tar.gz''
+8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/Rhtslib_1.26.0.tar.gz''
+9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/globals_0.15.1.tar.gz''
+10): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/DNAcopy_1.68.0.tar.gz''
+11): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/marray_1.72.0.tar.gz''
+12): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/R.oo_1.25.0.tar.gz''
+13): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/future_1.26.1.tar.gz''
+14): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/Rsamtools_2.10.0.tar.gz''
+15): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/CGHbase_1.54.0.tar.gz''
+16): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/R.utils_2.12.0.tar.gz''
+17): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/future.apply_1.9.0.tar.gz''
+18): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/CGHcall_2.56.0.tar.gz''
+19): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeOIgqF/downloaded_packages/QDNAseq_1.30.0.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpeOIgqF/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 13 / 23: GenomeInfoDbData
+
+================
+
+
+
+
+
+
+tempo.warn: simpleWarning: package â€˜GenomeInfoDbDataâ€™ is not available for this version of R
+
+A version of this package for your version of R might be available elsewhere,
+see the ideas at
+https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
+
+
+
+Bioconductor version 3.14 (BiocManager 1.30.18), R 4.1.2 (2021-11-01)
+Warning: package(s) not installed when version(s) same as current; use `force = TRUE` to
+  re-install: 'GenomeInfoDbData'
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 14 / 23: ggplot2
+
+================
+
+
+
+
+now dyn.load("/usr/local/lib/R/site-library/fs/libs/fs.so") ...
+now dyn.load("/usr/local/lib/R/site-library/cli/libs/cli.so") ...
+now dyn.load("/usr/local/lib/R/site-library/rlang/libs/rlang.so") ...
+now dyn.load("/usr/local/lib/R/site-library/ellipsis/libs/ellipsis.so") ...
+now dyn.load("/usr/local/lib/R/site-library/fastmap/libs/fastmap.so") ...
+now dyn.load("/usr/local/lib/R/site-library/cachem/libs/cachem.so") ...
+now dyn.load("/usr/local/lib/R/site-library/processx/libs/processx.so") ...
+now dyn.load("/usr/local/lib/R/site-library/ps/libs/ps.so") ...
+now dyn.load("/usr/lib/R/library/tools/libs/tools.so") ...
+now dyn.load("/usr/local/lib/R/site-library/glue/libs/glue.so") ...
+now dyn.load("/usr/local/lib/R/site-library/magrittr/libs/magrittr.so") ...
+now dyn.load("/usr/local/lib/R/site-library/purrr/libs/purrr.so") ...
+Downloading package from url: http://cran.us.r-project.org/src/contrib/Archive/ggplot2/ggplot2_3.3.3.tar.gz
+Installing 8 packages: colorspace, viridisLite, RColorBrewer, munsell, labeling, farver, scales, isoband
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+trying URL 'http://cran.us.r-project.org/src/contrib/colorspace_2.0-3.tar.gz'
+Content type 'application/x-gzip' length 2199185 bytes (2.1 MB)
+==================================================
+downloaded 2.1 MB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/viridisLite_0.4.0.tar.gz'
+Content type 'application/x-gzip' length 1267080 bytes (1.2 MB)
+==================================================
+downloaded 1.2 MB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/RColorBrewer_1.1-3.tar.gz'
+Content type 'application/x-gzip' length 11638 bytes (11 KB)
+==================================================
+downloaded 11 KB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/munsell_0.5.0.tar.gz'
+Content type 'application/x-gzip' length 182653 bytes (178 KB)
+==================================================
+downloaded 178 KB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/labeling_0.4.2.tar.gz'
+Content type 'application/x-gzip' length 10156 bytes
+==================================================
+downloaded 10156 bytes
+
+trying URL 'http://cran.us.r-project.org/src/contrib/farver_2.1.0.tar.gz'
+Content type 'application/x-gzip' length 1281864 bytes (1.2 MB)
+==================================================
+downloaded 1.2 MB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/scales_1.2.0.tar.gz'
+Content type 'application/x-gzip' length 270188 bytes (263 KB)
+==================================================
+downloaded 263 KB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/isoband_0.2.5.tar.gz'
+Content type 'application/x-gzip' length 1671911 bytes (1.6 MB)
+==================================================
+downloaded 1.6 MB
+
+foundpkgs: colorspace, viridisLite, RColorBrewer, munsell, labeling, farver, scales, isoband, /tmp/RtmpLkcA6a/downloaded_packages/colorspace_2.0-3.tar.gz, /tmp/RtmpLkcA6a/downloaded_packages/viridisLite_0.4.0.tar.gz, /tmp/RtmpLkcA6a/downloaded_packages/RColorBrewer_1.1-3.tar.gz, /tmp/RtmpLkcA6a/downloaded_packages/munsell_0.5.0.tar.gz, /tmp/RtmpLkcA6a/downloaded_packages/labeling_0.4.2.tar.gz, /tmp/RtmpLkcA6a/downloaded_packages/farver_2.1.0.tar.gz, /tmp/RtmpLkcA6a/downloaded_packages/scales_1.2.0.tar.gz, /tmp/RtmpLkcA6a/downloaded_packages/isoband_0.2.5.tar.gz
+files: /tmp/RtmpLkcA6a/downloaded_packages/colorspace_2.0-3.tar.gz, 
+	/tmp/RtmpLkcA6a/downloaded_packages/viridisLite_0.4.0.tar.gz, 
+	/tmp/RtmpLkcA6a/downloaded_packages/RColorBrewer_1.1-3.tar.gz, 
+	/tmp/RtmpLkcA6a/downloaded_packages/munsell_0.5.0.tar.gz, 
+	/tmp/RtmpLkcA6a/downloaded_packages/labeling_0.4.2.tar.gz, 
+	/tmp/RtmpLkcA6a/downloaded_packages/farver_2.1.0.tar.gz, 
+	/tmp/RtmpLkcA6a/downloaded_packages/scales_1.2.0.tar.gz, 
+	/tmp/RtmpLkcA6a/downloaded_packages/isoband_0.2.5.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLkcA6a/downloaded_packages/colorspace_2.0-3.tar.gz''
+2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLkcA6a/downloaded_packages/viridisLite_0.4.0.tar.gz''
+3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLkcA6a/downloaded_packages/RColorBrewer_1.1-3.tar.gz''
+4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLkcA6a/downloaded_packages/labeling_0.4.2.tar.gz''
+5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLkcA6a/downloaded_packages/farver_2.1.0.tar.gz''
+6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLkcA6a/downloaded_packages/isoband_0.2.5.tar.gz''
+7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLkcA6a/downloaded_packages/munsell_0.5.0.tar.gz''
+8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLkcA6a/downloaded_packages/scales_1.2.0.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpLkcA6a/downloaded_packagesâ€™
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLkcA6a/remotesb1b67111cf9/ggplot2''
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 15 / 23: HiCcompare
+
+================
+
+
+
+
+
+
+tempo.warn: simpleWarning: package â€˜HiCcompareâ€™ is not available for this version of R
+
+A version of this package for your version of R might be available elsewhere,
+see the ideas at
+https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
+
+
+
+Bioconductor version 3.14 (BiocManager 1.30.18), R 4.1.2 (2021-11-01)
+Installing package(s) 'HiCcompare'
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+also installing the dependencies â€˜Rhdf5libâ€™, â€˜rhdf5filtersâ€™, â€˜pheatmapâ€™, â€˜gtoolsâ€™, â€˜rhdf5â€™
+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Rhdf5lib_1.16.0.tar.gz'
+Content type 'application/x-gzip' length 9989467 bytes (9.5 MB)
+==================================================
+downloaded 9.5 MB
+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/rhdf5filters_1.6.0.tar.gz'
+Content type 'application/x-gzip' length 854552 bytes (834 KB)
+==================================================
+downloaded 834 KB
+
+trying URL 'https://cloud.r-project.org/src/contrib/pheatmap_1.0.12.tar.gz'
+Content type 'application/x-gzip' length 15071 bytes (14 KB)
+==================================================
+downloaded 14 KB
+
+trying URL 'https://cloud.r-project.org/src/contrib/gtools_3.9.2.2.tar.gz'
+Content type 'application/x-gzip' length 223736 bytes (218 KB)
+==================================================
+downloaded 218 KB
+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/rhdf5_2.38.1.tar.gz'
+Content type 'application/x-gzip' length 1231762 bytes (1.2 MB)
+==================================================
+downloaded 1.2 MB
+
+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/HiCcompare_1.16.0.tar.gz'
+Content type 'application/x-gzip' length 3714564 bytes (3.5 MB)
+==================================================
+downloaded 3.5 MB
+
+foundpkgs: Rhdf5lib, rhdf5filters, pheatmap, gtools, rhdf5, HiCcompare, /tmp/RtmpMIbGPn/downloaded_packages/Rhdf5lib_1.16.0.tar.gz, /tmp/RtmpMIbGPn/downloaded_packages/rhdf5filters_1.6.0.tar.gz, /tmp/RtmpMIbGPn/downloaded_packages/pheatmap_1.0.12.tar.gz, /tmp/RtmpMIbGPn/downloaded_packages/gtools_3.9.2.2.tar.gz, /tmp/RtmpMIbGPn/downloaded_packages/rhdf5_2.38.1.tar.gz, /tmp/RtmpMIbGPn/downloaded_packages/HiCcompare_1.16.0.tar.gz
+files: /tmp/RtmpMIbGPn/downloaded_packages/Rhdf5lib_1.16.0.tar.gz, 
+	/tmp/RtmpMIbGPn/downloaded_packages/rhdf5filters_1.6.0.tar.gz, 
+	/tmp/RtmpMIbGPn/downloaded_packages/pheatmap_1.0.12.tar.gz, 
+	/tmp/RtmpMIbGPn/downloaded_packages/gtools_3.9.2.2.tar.gz, 
+	/tmp/RtmpMIbGPn/downloaded_packages/rhdf5_2.38.1.tar.gz, 
+	/tmp/RtmpMIbGPn/downloaded_packages/HiCcompare_1.16.0.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpMIbGPn/downloaded_packages/Rhdf5lib_1.16.0.tar.gz''
+2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpMIbGPn/downloaded_packages/pheatmap_1.0.12.tar.gz''
+3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpMIbGPn/downloaded_packages/gtools_3.9.2.2.tar.gz''
+4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpMIbGPn/downloaded_packages/rhdf5filters_1.6.0.tar.gz''
+5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpMIbGPn/downloaded_packages/rhdf5_2.38.1.tar.gz''
+6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpMIbGPn/downloaded_packages/HiCcompare_1.16.0.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpMIbGPn/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 16 / 23: lubridate
+
+================
+
+
+
+
+trying URL 'http://cran.us.r-project.org/src/contrib/lubridate_1.8.0.tar.gz'
+Content type 'application/x-gzip' length 475704 bytes (464 KB)
+==================================================
+downloaded 464 KB
+
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpV7Cz13/downloaded_packagesâ€™
+
+
+tempo.warn: 
+
+
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 17 / 23: parallel
+
+================
+
+
+
+
+
+
+tempo.warn: simpleWarning: package â€˜parallelâ€™ is a base package, and should not be updated
+
+
+
+Bioconductor version 3.14 (BiocManager 1.30.18), R 4.1.2 (2021-11-01)
+Warning: package(s) not installed when version(s) same as current; use `force = TRUE` to
+  re-install: 'parallel'
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 18 / 23: reshape2
+
+================
+
+
+
+
+trying URL 'http://cran.us.r-project.org/src/contrib/plyr_1.8.7.tar.gz'
+Content type 'application/x-gzip' length 401481 bytes (392 KB)
+==================================================
+downloaded 392 KB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/reshape2_1.4.4.tar.gz'
+Content type 'application/x-gzip' length 37307 bytes (36 KB)
+==================================================
+downloaded 36 KB
+
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpcJgdsN/downloaded_packagesâ€™
+
+
+tempo.warn: 
+
+
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 19 / 23: binb
+
+================
+
+
+
+
+trying URL 'http://cran.us.r-project.org/src/contrib/sass_0.4.1.tar.gz'
+Content type 'application/x-gzip' length 3022870 bytes (2.9 MB)
+==================================================
+downloaded 2.9 MB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/base64enc_0.1-3.tar.gz'
+Content type 'application/x-gzip' length 7833 bytes
+==================================================
+downloaded 7833 bytes
+
+trying URL 'http://cran.us.r-project.org/src/contrib/bslib_0.3.1.tar.gz'
+Content type 'application/x-gzip' length 4908277 bytes (4.7 MB)
+==================================================
+downloaded 4.7 MB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/htmltools_0.5.2.tar.gz'
+Content type 'application/x-gzip' length 124510 bytes (121 KB)
+==================================================
+downloaded 121 KB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/jquerylib_0.1.4.tar.gz'
+Content type 'application/x-gzip' length 520207 bytes (508 KB)
+==================================================
+downloaded 508 KB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/tinytex_0.40.tar.gz'
+Content type 'application/x-gzip' length 32846 bytes (32 KB)
+==================================================
+downloaded 32 KB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/rmarkdown_2.14.tar.gz'
+Content type 'application/x-gzip' length 3241807 bytes (3.1 MB)
+==================================================
+downloaded 3.1 MB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/binb_0.0.6.tar.gz'
+Content type 'application/x-gzip' length 2999419 bytes (2.9 MB)
+==================================================
+downloaded 2.9 MB
+
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpAUApQX/downloaded_packagesâ€™
+
+
+tempo.warn: 
+
+
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 20 / 23: linl
+
+================
+
+
+
+
+trying URL 'http://cran.us.r-project.org/src/contrib/linl_0.0.4.tar.gz'
+Content type 'application/x-gzip' length 76937 bytes (75 KB)
+==================================================
+downloaded 75 KB
+
+
+The downloaded source packages are in
+	â€˜/tmp/Rtmps0nd9E/downloaded_packagesâ€™
+
+
+tempo.warn: 
+
+
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 21 / 23: pinp
+
+================
+
+
+
+
+trying URL 'http://cran.us.r-project.org/src/contrib/pinp_0.0.10.tar.gz'
+Content type 'application/x-gzip' length 214270 bytes (209 KB)
+==================================================
+downloaded 209 KB
+
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpYxvPDe/downloaded_packagesâ€™
+
+
+tempo.warn: 
+
+
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 22 / 23: tint
+
+================
+
+
+
+
+trying URL 'http://cran.us.r-project.org/src/contrib/tint_0.1.3.tar.gz'
+Content type 'application/x-gzip' length 1937029 bytes (1.8 MB)
+==================================================
+downloaded 1.8 MB
+
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpSU20qH/downloaded_packagesâ€™
+
+
+tempo.warn: 
+
+
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 23 / 23: pdftools
+
+================
+
+
+
+
+trying URL 'http://cran.us.r-project.org/src/contrib/qpdf_1.2.0.tar.gz'
+Content type 'application/x-gzip' length 321641 bytes (314 KB)
+==================================================
+downloaded 314 KB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/pdftools_3.2.1.tar.gz'
+Content type 'application/x-gzip' length 936059 bytes (914 KB)
+==================================================
+downloaded 914 KB
+
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpOInTDd/downloaded_packagesâ€™
+
+
+tempo.warn: 
+
+
+
+
+
+
+================
+
+R PACKAGES INSTALLED
+
+================
+
+
+
+
+SEE ALSO THE installed_r_packages.csv TABLE IN THE ROOT OF THE CONTAINER
+
+
+now dyn.load("/usr/lib/R/library/tools/libs/tools.so") ...
+                                  Package                       LibPath
+askpass                           askpass /usr/local/lib/R/site-library
+base64enc                       base64enc /usr/local/lib/R/site-library
+BH                                     BH /usr/local/lib/R/site-library
+binb                                 binb /usr/local/lib/R/site-library
+Biobase                           Biobase /usr/local/lib/R/site-library
+BiocGenerics                 BiocGenerics /usr/local/lib/R/site-library
+BiocManager                   BiocManager /usr/local/lib/R/site-library
+BiocParallel                 BiocParallel /usr/local/lib/R/site-library
+BiocVersion                   BiocVersion /usr/local/lib/R/site-library
+Biostrings                     Biostrings /usr/local/lib/R/site-library
+bitops                             bitops /usr/local/lib/R/site-library
+brew                                 brew /usr/local/lib/R/site-library
+brio                                 brio /usr/local/lib/R/site-library
+bslib                               bslib /usr/local/lib/R/site-library
+cachem                             cachem /usr/local/lib/R/site-library
+Cairo                               Cairo /usr/local/lib/R/site-library
+callr                               callr /usr/local/lib/R/site-library
+CGHbase                           CGHbase /usr/local/lib/R/site-library
+CGHcall                           CGHcall /usr/local/lib/R/site-library
+cli                                   cli /usr/local/lib/R/site-library
+clipr                               clipr /usr/local/lib/R/site-library
+colorspace                     colorspace /usr/local/lib/R/site-library
+commonmark                     commonmark /usr/local/lib/R/site-library
+cpp11                               cpp11 /usr/local/lib/R/site-library
+crayon                             crayon /usr/local/lib/R/site-library
+credentials                   credentials /usr/local/lib/R/site-library
+curl                                 curl /usr/local/lib/R/site-library
+data.table                     data.table /usr/local/lib/R/site-library
+DelayedArray                 DelayedArray /usr/local/lib/R/site-library
+desc                                 desc /usr/local/lib/R/site-library
+devtools                         devtools /usr/local/lib/R/site-library
+diffobj                           diffobj /usr/local/lib/R/site-library
+digest                             digest /usr/local/lib/R/site-library
+DNAcopy                           DNAcopy /usr/local/lib/R/site-library
+docopt                             docopt /usr/local/lib/R/site-library
+dplyr                               dplyr /usr/local/lib/R/site-library
+ellipsis                         ellipsis /usr/local/lib/R/site-library
+evaluate                         evaluate /usr/local/lib/R/site-library
+fansi                               fansi /usr/local/lib/R/site-library
+farver                             farver /usr/local/lib/R/site-library
+fastmap                           fastmap /usr/local/lib/R/site-library
+formatR                           formatR /usr/local/lib/R/site-library
+fs                                     fs /usr/local/lib/R/site-library
+futile.logger               futile.logger /usr/local/lib/R/site-library
+futile.options             futile.options /usr/local/lib/R/site-library
+future                             future /usr/local/lib/R/site-library
+future.apply                 future.apply /usr/local/lib/R/site-library
+generics                         generics /usr/local/lib/R/site-library
+GenomeInfoDb                 GenomeInfoDb /usr/local/lib/R/site-library
+GenomeInfoDbData         GenomeInfoDbData /usr/local/lib/R/site-library
+GenomicRanges               GenomicRanges /usr/local/lib/R/site-library
+gert                                 gert /usr/local/lib/R/site-library
+ggplot2                           ggplot2 /usr/local/lib/R/site-library
+gh                                     gh /usr/local/lib/R/site-library
+gitcreds                         gitcreds /usr/local/lib/R/site-library
+globals                           globals /usr/local/lib/R/site-library
+glue                                 glue /usr/local/lib/R/site-library
+gridExtra                       gridExtra /usr/local/lib/R/site-library
+gtable                             gtable /usr/local/lib/R/site-library
+gtools                             gtools /usr/local/lib/R/site-library
+HiCcompare                     HiCcompare /usr/local/lib/R/site-library
+highr                               highr /usr/local/lib/R/site-library
+htmltools                       htmltools /usr/local/lib/R/site-library
+httr                                 httr /usr/local/lib/R/site-library
+impute                             impute /usr/local/lib/R/site-library
+ini                                   ini /usr/local/lib/R/site-library
+InteractionSet             InteractionSet /usr/local/lib/R/site-library
+IRanges                           IRanges /usr/local/lib/R/site-library
+isoband                           isoband /usr/local/lib/R/site-library
+jquerylib                       jquerylib /usr/local/lib/R/site-library
+jsonlite                         jsonlite /usr/local/lib/R/site-library
+knitr                               knitr /usr/local/lib/R/site-library
+labeling                         labeling /usr/local/lib/R/site-library
+lambda.r                         lambda.r /usr/local/lib/R/site-library
+lifecycle                       lifecycle /usr/local/lib/R/site-library
+limma                               limma /usr/local/lib/R/site-library
+linl                                 linl /usr/local/lib/R/site-library
+listenv                           listenv /usr/local/lib/R/site-library
+lubridate                       lubridate /usr/local/lib/R/site-library
+magrittr                         magrittr /usr/local/lib/R/site-library
+marray                             marray /usr/local/lib/R/site-library
+MatrixGenerics             MatrixGenerics /usr/local/lib/R/site-library
+matrixStats                   matrixStats /usr/local/lib/R/site-library
+memoise                           memoise /usr/local/lib/R/site-library
+mgcv                                 mgcv /usr/local/lib/R/site-library
+mime                                 mime /usr/local/lib/R/site-library
+munsell                           munsell /usr/local/lib/R/site-library
+openssl                           openssl /usr/local/lib/R/site-library
+parallelly                     parallelly /usr/local/lib/R/site-library
+pdftools                         pdftools /usr/local/lib/R/site-library
+pheatmap                         pheatmap /usr/local/lib/R/site-library
+pillar                             pillar /usr/local/lib/R/site-library
+pinp                                 pinp /usr/local/lib/R/site-library
+pkgbuild                         pkgbuild /usr/local/lib/R/site-library
+pkgconfig                       pkgconfig /usr/local/lib/R/site-library
+pkgload                           pkgload /usr/local/lib/R/site-library
+plyr                                 plyr /usr/local/lib/R/site-library
+praise                             praise /usr/local/lib/R/site-library
+prettyunits                   prettyunits /usr/local/lib/R/site-library
+processx                         processx /usr/local/lib/R/site-library
+ps                                     ps /usr/local/lib/R/site-library
+purrr                               purrr /usr/local/lib/R/site-library
+QDNAseq                           QDNAseq /usr/local/lib/R/site-library
+qpdf                                 qpdf /usr/local/lib/R/site-library
+R.methodsS3                   R.methodsS3 /usr/local/lib/R/site-library
+R.oo                                 R.oo /usr/local/lib/R/site-library
+R.utils                           R.utils /usr/local/lib/R/site-library
+R6                                     R6 /usr/local/lib/R/site-library
+rappdirs                         rappdirs /usr/local/lib/R/site-library
+rcmdcheck                       rcmdcheck /usr/local/lib/R/site-library
+RColorBrewer                 RColorBrewer /usr/local/lib/R/site-library
+Rcpp                                 Rcpp /usr/local/lib/R/site-library
+RCurl                               RCurl /usr/local/lib/R/site-library
+rematch2                         rematch2 /usr/local/lib/R/site-library
+remotes                           remotes /usr/local/lib/R/site-library
+reshape2                         reshape2 /usr/local/lib/R/site-library
+rhdf5                               rhdf5 /usr/local/lib/R/site-library
+rhdf5filters                 rhdf5filters /usr/local/lib/R/site-library
+Rhdf5lib                         Rhdf5lib /usr/local/lib/R/site-library
+Rhtslib                           Rhtslib /usr/local/lib/R/site-library
+rlang                               rlang /usr/local/lib/R/site-library
+rmarkdown                       rmarkdown /usr/local/lib/R/site-library
+roxygen2                         roxygen2 /usr/local/lib/R/site-library
+rprojroot                       rprojroot /usr/local/lib/R/site-library
+Rsamtools                       Rsamtools /usr/local/lib/R/site-library
+rstudioapi                     rstudioapi /usr/local/lib/R/site-library
+rversions                       rversions /usr/local/lib/R/site-library
+S4Vectors                       S4Vectors /usr/local/lib/R/site-library
+sass                                 sass /usr/local/lib/R/site-library
+scales                             scales /usr/local/lib/R/site-library
+sessioninfo                   sessioninfo /usr/local/lib/R/site-library
+snow                                 snow /usr/local/lib/R/site-library
+snowfall                         snowfall /usr/local/lib/R/site-library
+stringi                           stringi /usr/local/lib/R/site-library
+stringr                           stringr /usr/local/lib/R/site-library
+SummarizedExperiment SummarizedExperiment /usr/local/lib/R/site-library
+sys                                   sys /usr/local/lib/R/site-library
+testthat                         testthat /usr/local/lib/R/site-library
+tibble                             tibble /usr/local/lib/R/site-library
+tidyselect                     tidyselect /usr/local/lib/R/site-library
+tint                                 tint /usr/local/lib/R/site-library
+tinytex                           tinytex /usr/local/lib/R/site-library
+usethis                           usethis /usr/local/lib/R/site-library
+utf8                                 utf8 /usr/local/lib/R/site-library
+vctrs                               vctrs /usr/local/lib/R/site-library
+viridisLite                   viridisLite /usr/local/lib/R/site-library
+waldo                               waldo /usr/local/lib/R/site-library
+whisker                           whisker /usr/local/lib/R/site-library
+withr                               withr /usr/local/lib/R/site-library
+xfun                                 xfun /usr/local/lib/R/site-library
+xml2                                 xml2 /usr/local/lib/R/site-library
+xopen                               xopen /usr/local/lib/R/site-library
+XVector                           XVector /usr/local/lib/R/site-library
+yaml                                 yaml /usr/local/lib/R/site-library
+zip                                   zip /usr/local/lib/R/site-library
+zlibbioc                         zlibbioc /usr/local/lib/R/site-library
+littler                           littler       /usr/lib/R/site-library
+base                                 base            /usr/lib/R/library
+boot                                 boot            /usr/lib/R/library
+class                               class            /usr/lib/R/library
+cluster                           cluster            /usr/lib/R/library
+codetools                       codetools            /usr/lib/R/library
+compiler                         compiler            /usr/lib/R/library
+datasets                         datasets            /usr/lib/R/library
+foreign                           foreign            /usr/lib/R/library
+graphics                         graphics            /usr/lib/R/library
+grDevices                       grDevices            /usr/lib/R/library
+grid                                 grid            /usr/lib/R/library
+KernSmooth                     KernSmooth            /usr/lib/R/library
+lattice                           lattice            /usr/lib/R/library
+MASS                                 MASS            /usr/lib/R/library
+Matrix                             Matrix            /usr/lib/R/library
+methods                           methods            /usr/lib/R/library
+mgcv.1                               mgcv            /usr/lib/R/library
+nlme                                 nlme            /usr/lib/R/library
+nnet                                 nnet            /usr/lib/R/library
+parallel                         parallel            /usr/lib/R/library
+rpart                               rpart            /usr/lib/R/library
+spatial                           spatial            /usr/lib/R/library
+splines                           splines            /usr/lib/R/library
+stats                               stats            /usr/lib/R/library
+stats4                             stats4            /usr/lib/R/library
+survival                         survival            /usr/lib/R/library
+tcltk                               tcltk            /usr/lib/R/library
+tools                               tools            /usr/lib/R/library
+utils                               utils            /usr/lib/R/library
+                      Version    Priority
+askpass                   1.1        <NA>
+base64enc               0.1-3        <NA>
+BH                   1.78.0-0        <NA>
+binb                    0.0.6        <NA>
+Biobase                2.54.0        <NA>
+BiocGenerics           0.40.0        <NA>
+BiocManager           1.30.18        <NA>
+BiocParallel           1.28.3        <NA>
+BiocVersion            3.14.0        <NA>
+Biostrings             2.62.0        <NA>
+bitops                  1.0-7        <NA>
+brew                    1.0-7        <NA>
+brio                    1.1.3        <NA>
+bslib                   0.3.1        <NA>
+cachem                  1.0.6        <NA>
+Cairo                  1.5-15        <NA>
+callr                   3.7.0        <NA>
+CGHbase                1.54.0        <NA>
+CGHcall                2.56.0        <NA>
+cli                     3.3.0        <NA>
+clipr                   0.8.0        <NA>
+colorspace              2.0-3        <NA>
+commonmark              1.8.0        <NA>
+cpp11                   0.4.2        <NA>
+crayon                  1.5.1        <NA>
+credentials             1.3.2        <NA>
+curl                    4.3.2        <NA>
+data.table             1.14.2        <NA>
+DelayedArray           0.20.0        <NA>
+desc                    1.4.1        <NA>
+devtools                2.4.3        <NA>
+diffobj                 0.3.5        <NA>
+digest                 0.6.29        <NA>
+DNAcopy                1.68.0        <NA>
+docopt                  0.7.1        <NA>
+dplyr                   1.0.9        <NA>
+ellipsis                0.3.2        <NA>
+evaluate                 0.15        <NA>
+fansi                   1.0.3        <NA>
+farver                  2.1.0        <NA>
+fastmap                 1.1.0        <NA>
+formatR                  1.12        <NA>
+fs                      1.5.2        <NA>
+futile.logger           1.4.3        <NA>
+futile.options          1.0.1        <NA>
+future                 1.26.1        <NA>
+future.apply            1.9.0        <NA>
+generics                0.1.2        <NA>
+GenomeInfoDb           1.30.1        <NA>
+GenomeInfoDbData        1.2.7        <NA>
+GenomicRanges          1.46.1        <NA>
+gert                    1.6.0        <NA>
+ggplot2                 3.3.3        <NA>
+gh                      1.3.0        <NA>
+gitcreds                0.1.1        <NA>
+globals                0.15.1        <NA>
+glue                    1.6.2        <NA>
+gridExtra                 2.3        <NA>
+gtable                  0.3.0        <NA>
+gtools                3.9.2.2        <NA>
+HiCcompare             1.16.0        <NA>
+highr                     0.9        <NA>
+htmltools               0.5.2        <NA>
+httr                    1.4.3        <NA>
+impute                 1.68.0        <NA>
+ini                     0.3.1        <NA>
+InteractionSet         1.22.0        <NA>
+IRanges                2.28.0        <NA>
+isoband                 0.2.5        <NA>
+jquerylib               0.1.4        <NA>
+jsonlite                1.8.0        <NA>
+knitr                    1.39        <NA>
+labeling                0.4.2        <NA>
+lambda.r                1.2.4        <NA>
+lifecycle               1.0.1        <NA>
+limma                  3.50.3        <NA>
+linl                    0.0.4        <NA>
+listenv                 0.8.0        <NA>
+lubridate               1.8.0        <NA>
+magrittr                2.0.3        <NA>
+marray                 1.72.0        <NA>
+MatrixGenerics          1.6.0        <NA>
+matrixStats            0.62.0        <NA>
+memoise                 2.0.1        <NA>
+mgcv                   1.8-40 recommended
+mime                     0.12        <NA>
+munsell                 0.5.0        <NA>
+openssl                 2.0.2        <NA>
+parallelly             1.32.0        <NA>
+pdftools                3.2.1        <NA>
+pheatmap               1.0.12        <NA>
+pillar                  1.7.0        <NA>
+pinp                   0.0.10        <NA>
+pkgbuild                1.3.1        <NA>
+pkgconfig               2.0.3        <NA>
+pkgload                 1.3.0        <NA>
+plyr                    1.8.7        <NA>
+praise                  1.0.0        <NA>
+prettyunits             1.1.1        <NA>
+processx                3.6.1        <NA>
+ps                      1.7.1        <NA>
+purrr                   0.3.4        <NA>
+QDNAseq                1.30.0        <NA>
+qpdf                    1.2.0        <NA>
+R.methodsS3             1.8.2        <NA>
+R.oo                   1.25.0        <NA>
+R.utils                2.12.0        <NA>
+R6                      2.5.1        <NA>
+rappdirs                0.3.3        <NA>
+rcmdcheck               1.4.0        <NA>
+RColorBrewer            1.1-3        <NA>
+Rcpp                  1.0.8.3        <NA>
+RCurl                1.98-1.7        <NA>
+rematch2                2.1.2        <NA>
+remotes                 2.4.2        <NA>
+reshape2                1.4.4        <NA>
+rhdf5                  2.38.1        <NA>
+rhdf5filters            1.6.0        <NA>
+Rhdf5lib               1.16.0        <NA>
+Rhtslib                1.26.0        <NA>
+rlang                   1.0.3        <NA>
+rmarkdown                2.14        <NA>
+roxygen2                7.2.0        <NA>
+rprojroot               2.0.3        <NA>
+Rsamtools              2.10.0        <NA>
+rstudioapi               0.13        <NA>
+rversions               2.1.1        <NA>
+S4Vectors              0.32.4        <NA>
+sass                    0.4.1        <NA>
+scales                  1.2.0        <NA>
+sessioninfo             1.2.2        <NA>
+snow                    0.4-4        <NA>
+snowfall             1.84-6.1        <NA>
+stringi                 1.7.6        <NA>
+stringr                 1.4.0        <NA>
+SummarizedExperiment   1.24.0        <NA>
+sys                       3.4        <NA>
+testthat                3.1.4        <NA>
+tibble                  3.1.7        <NA>
+tidyselect              1.1.2        <NA>
+tint                    0.1.3        <NA>
+tinytex                  0.40        <NA>
+usethis                 2.1.6        <NA>
+utf8                    1.2.2        <NA>
+vctrs                   0.4.1        <NA>
+viridisLite             0.4.0        <NA>
+waldo                   0.4.0        <NA>
+whisker                   0.4        <NA>
+withr                   2.5.0        <NA>
+xfun                     0.31        <NA>
+xml2                    1.3.3        <NA>
+xopen                   1.0.0        <NA>
+XVector                0.34.0        <NA>
+yaml                    2.3.5        <NA>
+zip                     2.2.0        <NA>
+zlibbioc               1.40.0        <NA>
+littler                0.3.15        <NA>
+base                    4.1.2        base
+boot                   1.3-28 recommended
+class                  7.3-20 recommended
+cluster                 2.1.2 recommended
+codetools              0.2-18 recommended
+compiler                4.1.2        base
+datasets                4.1.2        base
+foreign                0.8-82 recommended
+graphics                4.1.2        base
+grDevices               4.1.2        base
+grid                    4.1.2        base
+KernSmooth            2.23-20 recommended
+lattice               0.20-45 recommended
+MASS                   7.3-55 recommended
+Matrix                  1.4-0 recommended
+methods                 4.1.2        base
+mgcv.1                 1.8-38 recommended
+nlme                  3.1-155 recommended
+nnet                   7.3-17 recommended
+parallel                4.1.2        base
+rpart                  4.1.16 recommended
+spatial                7.3-15 recommended
+splines                 4.1.2        base
+stats                   4.1.2        base
+stats4                  4.1.2        base
+survival               3.2-13 recommended
+tcltk                   4.1.2        base
+tools                   4.1.2        base
+utils                   4.1.2        base
+
+
+
+
+================
+
+R PACKAGES NOT INSTALLED
+
+================
+
+
+
+
+ALL THE PACKAGES HAVE BEEN INSTALLED
+
+
+
+
+
+
+================
+
+apt-get autoremove
+
+================
+
+
+
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 86 not upgraded.
+
+
+
+
+================
+
+apt-get clean
+
+================
+
+
+
+
+
+
+
+
+================
+
+rm
+
+================
+
+
+
+
+
+
+
+
+================
+
+LINUX PACKAGES INSTALLED
+
+================
+
+
+
+
+procps:
+  Installed: 2:3.3.16-1ubuntu2.3
+  Candidate: 2:3.3.16-1ubuntu2.3
+  Version table:
+ *** 2:3.3.16-1ubuntu2.3 100
+        100 /var/lib/dpkg/status
+libfontconfig1-dev:
+  Installed: 2.13.1-2ubuntu3
+  Candidate: 2.13.1-2ubuntu3
+  Version table:
+ *** 2.13.1-2ubuntu3 100
+        100 /var/lib/dpkg/status
+ghostscript:
+  Installed: 9.50~dfsg-5ubuntu4.5
+  Candidate: 9.50~dfsg-5ubuntu4.5
+  Version table:
+ *** 9.50~dfsg-5ubuntu4.5 100
+        100 /var/lib/dpkg/status
+lmodern:
+  Installed: 2.004.5-6
+  Candidate: 2.004.5-6
+  Version table:
+ *** 2.004.5-6 100
+        100 /var/lib/dpkg/status
+pandoc:
+  Installed: 2.5-3build2
+  Candidate: 2.5-3build2
+  Version table:
+ *** 2.5-3build2 100
+        100 /var/lib/dpkg/status
+pandoc-citeproc:
+  Installed: 0.15.0.1-1build4
+  Candidate: 0.15.0.1-1build4
+  Version table:
+ *** 0.15.0.1-1build4 100
+        100 /var/lib/dpkg/status
+qpdf:
+  Installed: 9.1.1-1ubuntu0.1
+  Candidate: 9.1.1-1ubuntu0.1
+  Version table:
+ *** 9.1.1-1ubuntu0.1 100
+        100 /var/lib/dpkg/status
+texinfo:
+  Installed: 6.7.0.dfsg.2-5
+  Candidate: 6.7.0.dfsg.2-5
+  Version table:
+ *** 6.7.0.dfsg.2-5 100
+        100 /var/lib/dpkg/status
+texlive-fonts-extra:
+  Installed: 2019.202000218-1
+  Candidate: 2019.202000218-1
+  Version table:
+ *** 2019.202000218-1 100
+        100 /var/lib/dpkg/status
+texlive-fonts-recommended:
+  Installed: 2019.20200218-1
+  Candidate: 2019.20200218-1
+  Version table:
+ *** 2019.20200218-1 100
+        100 /var/lib/dpkg/status
+texlive-latex-extra:
+  Installed: 2019.202000218-1
+  Candidate: 2019.202000218-1
+  Version table:
+ *** 2019.202000218-1 100
+        100 /var/lib/dpkg/status
+texlive-latex-recommended:
+  Installed: 2019.20200218-1
+  Candidate: 2019.20200218-1
+  Version table:
+ *** 2019.20200218-1 100
+        100 /var/lib/dpkg/status
+texlive-luatex:
+  Installed: 2019.20200218-1
+  Candidate: 2019.20200218-1
+  Version table:
+ *** 2019.20200218-1 100
+        100 /var/lib/dpkg/status
+texlive-plain-generic:
+  Installed: 2019.202000218-1
+  Candidate: 2019.202000218-1
+  Version table:
+ *** 2019.202000218-1 100
+        100 /var/lib/dpkg/status
+texlive-science:
+  Installed: 2019.202000218-1
+  Candidate: 2019.202000218-1
+  Version table:
+ *** 2019.202000218-1 100
+        100 /var/lib/dpkg/status
+texlive-xetex:
+  Installed: 2019.20200218-1
+  Candidate: 2019.20200218-1
+  Version table:
+ *** 2019.20200218-1 100
+        100 /var/lib/dpkg/status
+libpoppler-cpp-dev:
+  Installed: 0.86.1-0ubuntu1
+  Candidate: 0.86.1-0ubuntu1
+  Version table:
+ *** 0.86.1-0ubuntu1 100
+        100 /var/lib/dpkg/status
+build-essential:
+  Installed: 12.8ubuntu1.1
+  Candidate: 12.8ubuntu1.1
+  Version table:
+ *** 12.8ubuntu1.1 100
+        100 /var/lib/dpkg/status
+libcurl4-gnutls-dev:
+  Installed: 7.68.0-1ubuntu2.12
+  Candidate: 7.68.0-1ubuntu2.12
+  Version table:
+ *** 7.68.0-1ubuntu2.12 100
+        100 /var/lib/dpkg/status
+libxml2-dev:
+  Installed: 2.9.10+dfsg-5ubuntu0.20.04.3
+  Candidate: 2.9.10+dfsg-5ubuntu0.20.04.3
+  Version table:
+ *** 2.9.10+dfsg-5ubuntu0.20.04.3 100
+        100 /var/lib/dpkg/status
+libssl-dev:
+  Installed: 1.1.1f-1ubuntu2.15
+  Candidate: 1.1.1f-1ubuntu2.15
+  Version table:
+ *** 1.1.1f-1ubuntu2.15 100
+        100 /var/lib/dpkg/status
+libgit2-dev:
+  Installed: 0.28.4+dfsg.1-2
+  Candidate: 0.28.4+dfsg.1-2
+  Version table:
+ *** 0.28.4+dfsg.1-2 100
+        100 /var/lib/dpkg/status
+libcairo2-dev:
+  Installed: 1.16.0-4ubuntu1
+  Candidate: 1.16.0-4ubuntu1
+  Version table:
+ *** 1.16.0-4ubuntu1 100
+        100 /var/lib/dpkg/status
+libxt-dev:
+  Installed: 1:1.1.5-1
+  Candidate: 1:1.1.5-1
+  Version table:
+ *** 1:1.1.5-1 100
+        100 /var/lib/dpkg/status
diff --git a/R/v4.1.2/extended/v1.1/installed_r_packages.csv b/R/v4.1.2/extended/v1.1/installed_r_packages.csv
new file mode 100644
index 0000000000000000000000000000000000000000..050444689f5a6de7b62ded45c9690bce7b02b838
--- /dev/null
+++ b/R/v4.1.2/extended/v1.1/installed_r_packages.csv
@@ -0,0 +1,187 @@
+Package;LibPath;Version;Priority;Depends;Imports;LinkingTo;Suggests;Enhances;License;License_is_FOSS;License_restricts_use;OS_type;MD5sum;NeedsCompilation;Built
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+usethis;/usr/local/lib/R/site-library;2.1.6;NA;R (>= 3.4);cli (>= 3.0.1), clipr (>= 0.3.0), crayon, curl (>= 2.7), desc(>= 1.4.0), fs (>= 1.3.0), gert (>= 1.4.1), gh (>= 1.2.1), glue(>= 1.3.0), jsonlite, lifecycle (>= 1.0.0), purrr, rappdirs,rlang (>= 1.0.0), rprojroot (>= 1.2), rstudioapi, stats, utils,whisker, withr (>= 2.3.0), yaml;NA;covr, knitr, magick, mockr, pkgload, rmarkdown, roxygen2 (>=7.1.2), spelling (>= 1.2), styler (>= 1.2.0), testthat (>=3.1.0);NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
+utf8;/usr/local/lib/R/site-library;1.2.2;NA;R (>= 2.10);NA;NA;cli, covr, knitr, rlang, rmarkdown, testthat (>= 3.0.0),withr;NA;Apache License (== 2.0) | file LICENSE;NA;NA;NA;NA;yes;4.1.2
+vctrs;/usr/local/lib/R/site-library;0.4.1;NA;R (>= 3.3);cli (>= 3.2.0), glue, rlang (>= 1.0.2);NA;bit64, covr, crayon, dplyr (>= 0.8.5), generics, knitr,pillar (>= 1.4.4), pkgdown (>= 2.0.1), rmarkdown, testthat (>=3.0.0), tibble (>= 3.1.3), withr, xml2, waldo (>= 0.2.0),zeallot;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
+viridisLite;/usr/local/lib/R/site-library;0.4.0;NA;R (>= 2.10);NA;NA;hexbin (>= 1.27.0), ggplot2 (>= 1.0.1), testthat, covr;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
+waldo;/usr/local/lib/R/site-library;0.4.0;NA;NA;cli, diffobj (>= 0.3.4), fansi, glue, methods, rematch2, rlang(>= 1.0.0), tibble;NA;covr, R6, testthat (>= 3.0.0), withr, xml2;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
+whisker;/usr/local/lib/R/site-library;0.4;NA;NA;NA;NA;markdown;NA;GPL-3;NA;NA;NA;NA;no;4.1.2
+withr;/usr/local/lib/R/site-library;2.5.0;NA;R (>= 3.2.0);graphics, grDevices, stats;NA;callr, covr, DBI, knitr, lattice, methods, rlang, rmarkdown(>= 2.12), RSQLite, testthat (>= 3.0.0);NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
+xfun;/usr/local/lib/R/site-library;0.31;NA;NA;stats, tools;NA;testit, parallel, codetools, rstudioapi, tinytex (>= 0.30),mime, markdown, knitr, htmltools, remotes, pak, rhub, renv,curl, jsonlite, rmarkdown;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
+xml2;/usr/local/lib/R/site-library;1.3.3;NA;R (>= 3.1.0);methods;NA;covr, curl, httr, knitr, magrittr, mockery, rmarkdown,testthat (>= 2.1.0);NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
+xopen;/usr/local/lib/R/site-library;1.0.0;NA;R (>= 3.1);processx;NA;ps, testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;no;4.1.2
+XVector;/usr/local/lib/R/site-library;0.34.0;NA;R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0), S4Vectors (>=0.27.12), IRanges (>= 2.23.9);methods, utils, tools, zlibbioc, BiocGenerics, S4Vectors,IRanges;S4Vectors, IRanges;Biostrings, drosophila2probe, RUnit;NA;Artistic-2.0;NA;NA;NA;NA;yes;4.1.2
+yaml;/usr/local/lib/R/site-library;2.3.5;NA;NA;NA;NA;RUnit;NA;BSD_3_clause + file LICENSE;NA;NA;NA;NA;yes;4.1.2
+zip;/usr/local/lib/R/site-library;2.2.0;NA;NA;NA;NA;covr, processx, R6, testthat, withr;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
+zlibbioc;/usr/local/lib/R/site-library;1.40.0;NA;NA;NA;NA;NA;NA;Artistic-2.0 + file LICENSE;NA;NA;NA;NA;yes;4.1.2
+littler;/usr/lib/R/site-library;0.3.15;NA;NA;NA;NA;simplermarkdown, docopt, rcmdcheck, foghorn;NA;GPL (>= 2);NA;NA;unix;NA;yes;4.1.2
+base;/usr/lib/R/library;4.1.2;base;NA;NA;NA;methods;NA;Part of R 4.1.2;NA;NA;NA;NA;NA;4.1.2
+boot;/usr/lib/R/library;1.3-28;recommended;R (>= 3.0.0), graphics, stats;NA;NA;MASS, survival;NA;Unlimited;NA;NA;NA;NA;no;4.0.5
+class;/usr/lib/R/library;7.3-20;recommended;R (>= 3.0.0), stats, utils;MASS;NA;NA;NA;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
+cluster;/usr/lib/R/library;2.1.2;recommended;R (>= 3.4.0);graphics, grDevices, stats, utils;NA;MASS, Matrix;NA;GPL (>= 2);NA;NA;NA;NA;yes;4.0.5
+codetools;/usr/lib/R/library;0.2-18;recommended;R (>= 2.1);NA;NA;NA;NA;GPL;NA;NA;NA;NA;no;4.0.3
+compiler;/usr/lib/R/library;4.1.2;base;NA;NA;NA;NA;NA;Part of R 4.1.2;NA;NA;NA;NA;NA;4.1.2
+datasets;/usr/lib/R/library;4.1.2;base;NA;NA;NA;NA;NA;Part of R 4.1.2;NA;NA;NA;NA;NA;4.1.2
+foreign;/usr/lib/R/library;0.8-82;recommended;R (>= 4.0.0);methods, utils, stats;NA;NA;NA;GPL (>= 2);NA;NA;NA;NA;yes;4.1.2
+graphics;/usr/lib/R/library;4.1.2;base;NA;grDevices;NA;NA;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
+grDevices;/usr/lib/R/library;4.1.2;base;NA;NA;NA;KernSmooth;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
+grid;/usr/lib/R/library;4.1.2;base;NA;grDevices, utils;NA;NA;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
+KernSmooth;/usr/lib/R/library;2.23-20;recommended;R (>= 2.5.0), stats;NA;NA;MASS, carData;NA;Unlimited;NA;NA;NA;NA;yes;4.0.5
+lattice;/usr/lib/R/library;0.20-45;recommended;R (>= 3.0.0);grid, grDevices, graphics, stats, utils;NA;KernSmooth, MASS, latticeExtra;chron;GPL (>= 2);NA;NA;NA;NA;yes;4.1.1
+MASS;/usr/lib/R/library;7.3-55;recommended;R (>= 3.3.0), grDevices, graphics, stats, utils;methods;NA;lattice, nlme, nnet, survival;NA;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
+Matrix;/usr/lib/R/library;1.4-0;recommended;R (>= 3.5.0);methods, graphics, grid, stats, utils, lattice;NA;expm, MASS;MatrixModels, graph, SparseM, sfsmisc, igraph, maptools, sp,spdep;GPL (>= 2) | file LICENCE;NA;NA;NA;NA;yes;4.1.2
+methods;/usr/lib/R/library;4.1.2;base;NA;utils, stats;NA;codetools;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
+mgcv;/usr/lib/R/library;1.8-38;recommended;R (>= 3.6.0), nlme (>= 3.1-64);methods, stats, graphics, Matrix, splines, utils;NA;parallel, survival, MASS;NA;GPL (>= 2);NA;NA;NA;NA;yes;4.1.1
+nlme;/usr/lib/R/library;3.1-155;recommended;R (>= 3.4.0);graphics, stats, utils, lattice;NA;Hmisc, MASS;NA;GPL (>= 2) | file LICENCE;NA;NA;NA;NA;yes;4.1.2
+nnet;/usr/lib/R/library;7.3-17;recommended;R (>= 3.0.0), stats, utils;NA;NA;MASS;NA;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
+parallel;/usr/lib/R/library;4.1.2;base;NA;tools, compiler;NA;methods;snow, nws, Rmpi;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
+rpart;/usr/lib/R/library;4.1.16;recommended;R (>= 2.15.0), graphics, stats, grDevices;NA;NA;survival;NA;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
+spatial;/usr/lib/R/library;7.3-15;recommended;R (>= 3.0.0), graphics, stats, utils;NA;NA;MASS;NA;GPL-2 | GPL-3;NA;NA;NA;NA;yes;4.1.2
+splines;/usr/lib/R/library;4.1.2;base;NA;graphics, stats;NA;Matrix, methods;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
+stats;/usr/lib/R/library;4.1.2;base;NA;utils, grDevices, graphics;NA;MASS, Matrix, SuppDists, methods, stats4;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
+stats4;/usr/lib/R/library;4.1.2;base;NA;graphics, methods, stats;NA;NA;NA;Part of R 4.1.2;NA;NA;NA;NA;NA;4.1.2
+survival;/usr/lib/R/library;3.2-13;recommended;R (>= 3.5.0);graphics, Matrix, methods, splines, stats, utils;NA;NA;NA;LGPL (>= 2);NA;NA;NA;NA;yes;4.1.1
+tcltk;/usr/lib/R/library;4.1.2;base;NA;utils;NA;NA;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
+tools;/usr/lib/R/library;4.1.2;base;NA;NA;NA;codetools, methods, xml2, curl, commonmark;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
+utils;/usr/lib/R/library;4.1.2;base;NA;NA;NA;methods, xml2, commonmark;NA;Part of R 4.1.2;NA;NA;NA;NA;yes;4.1.2
diff --git a/README.md b/README.md
index ad08773656969b9b2ec9847b911f5fd5059bacda..0dbc5f43202dda0dda8b4c5f6dcfec8a88a4030b 100644
--- a/README.md
+++ b/README.md
@@ -71,10 +71,16 @@ Hub-CDB Institut Pasteur & DSI Institut Pasteur
 
 Use the gitlab tag of the docker image (e.g., gitlab_v5.0) to get the description of the modifications below
 
+### 8.10
+
+Dockerfiles added: <br />
+R\v4.1.2\extended\v1.1 at date 20220628: 
+
+
 ### v8.9
 
 Dockerfiles added: <br />
-R\v4.1.2\contracted\v1.0 at date 20220622: example of file that remove some R packages. But works only if dependencies from packages kept are not removed
+R\v4.1.2\contracted\v1.0 at date 20220622: 
 
 
 ### v8.8
diff --git a/building.log b/building.log
new file mode 100644
index 0000000000000000000000000000000000000000..6e067ba3cdc74a5aa5ac0d285673e744eae51307
--- /dev/null
+++ b/building.log
@@ -0,0 +1,3546 @@
+
+
+
+
+================
+
+apt-get update
+
+================
+
+
+
+
+
+
+
+
+================
+
+apt-get install
+
+================
+
+
+
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+procps is already the newest version (2:3.3.16-1ubuntu2.3).
+The following additional packages will be installed:
+  dvisvgm fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius
+  fonts-adf-universalis fonts-cabin fonts-cantarell fonts-comfortaa
+  fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito
+  fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond
+  fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf
+  fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-baskerville
+  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
+  fonts-gfs-porson fonts-gfs-solomos fonts-go fonts-junicode fonts-lato
+  fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo
+  fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans
+  fonts-roboto-unhinted fonts-sil-gentium fonts-sil-gentium-basic
+  fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix fonts-texgyre
+  fonts-urw-base35 javascript-common libapache-pom-java libauthen-sasl-perl
+  libavahi-client3 libavahi-common-data libavahi-common3 libbibutils6
+  libcommons-logging-java libcommons-parent-java libcups2 libdata-dump-perl
+  libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1
+  libdrm2 libedit2 libencode-locale-perl libexpat1 libexpat1-dev
+  libfile-listing-perl libfont-afm-perl libfontbox-java libfontenc1
+  libfreetype-dev libfreetype6-dev libghc-pandoc-citeproc-data libgl1
+  libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgs9
+  libgs9-common libharfbuzz-icu0 libhtml-form-perl libhtml-format-perl
+  libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
+  libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
+  libhttp-message-perl libhttp-negotiate-perl libidn11 libijs-0.35
+  libio-html-perl libio-socket-ssl-perl libjbig2dec0 libjs-jquery libkpathsea6
+  liblcms2-2 libllvm12 liblwp-mediatypes-perl liblwp-protocol-https-perl
+  libmailtools-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl
+  libnspr4 libnss3 libopenjp2-7 libpciaccess0 libpdfbox-java libpoppler-cpp0v5
+  libpoppler-dev libpoppler97 libptexenc1 libqpdf26 libruby2.7
+  libsensors-config libsensors5 libsynctex2 libteckit0 libtexlua53
+  libtexluajit2 libtext-unidecode-perl libtimedate-perl libtry-tiny-perl
+  liburi-perl libutempter0 libuuid1 libvulkan1 libwayland-client0 libwoff1
+  libwww-perl libwww-robotrules-perl libx11-xcb1 libxaw7 libxcb-dri2-0
+  libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-shape0
+  libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxfixes3 libxi6 libxinerama1
+  libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl
+  libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl
+  libxml-sax-perl libxmu6 libxpm4 libxrandr2 libxshmfence1 libxtst6 libxv1
+  libxxf86dga1 libxxf86vm1 libzzip-0-13 mesa-vulkan-drivers netbase
+  pandoc-data perl-openssl-defaults poppler-data preview-latex-style rake ruby
+  ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc
+  ruby2.7 rubygems-integration t1utils tcl tcl8.6 teckit tex-common tex-gyre
+  texlive-base texlive-binaries texlive-fonts-extra-links texlive-lang-greek
+  texlive-latex-base texlive-pictures tipa tk tk8.6 uuid-dev x11-utils
+  xbitmaps xfonts-encodings xfonts-utils xterm
+Suggested packages:
+  fonts-noto fontforge ghostscript-x apache2 | lighttpd | httpd
+  libdigest-hmac-perl libgssapi-perl libavalon-framework-java
+  libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java
+  cups-common freetype2-doc liblcms2-utils libcrypt-ssleay-perl pciutils
+  lm-sensors libauthen-ntlm-perl libxml-sax-expatxs-perl context wkhtmltopdf
+  librsvg2-bin groff ghc nodejs php python libjs-mathjax node-katex
+  poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho
+  fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai
+  fonts-arphic-uming fonts-nanum ri ruby-dev bundler tcl-tclreadline debhelper
+  perl-tk xpdf | pdf-viewer xzdec cm-super texlive-fonts-extra-doc
+  texlive-fonts-recommended-doc texlive-latex-base-doc python3-pygments
+  icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl
+  texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pstricks
+  dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex
+  default-jre-headless texlive-science-doc mesa-utils xfonts-cyrillic
+Recommended packages:
+  uuid-runtime
+The following NEW packages will be installed:
+  dvisvgm fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius
+  fonts-adf-universalis fonts-cabin fonts-cantarell fonts-comfortaa
+  fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito
+  fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond
+  fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf
+  fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-baskerville
+  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
+  fonts-gfs-porson fonts-gfs-solomos fonts-go fonts-junicode fonts-lato
+  fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo
+  fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans
+  fonts-roboto-unhinted fonts-sil-gentium fonts-sil-gentium-basic
+  fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix fonts-texgyre
+  fonts-urw-base35 ghostscript javascript-common libapache-pom-java
+  libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3
+  libbibutils6 libcommons-logging-java libcommons-parent-java libcups2
+  libdata-dump-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2
+  libdrm-radeon1 libdrm2 libedit2 libencode-locale-perl libexpat1-dev
+  libfile-listing-perl libfont-afm-perl libfontbox-java libfontconfig1-dev
+  libfontenc1 libfreetype-dev libfreetype6-dev libghc-pandoc-citeproc-data
+  libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgs9
+  libgs9-common libharfbuzz-icu0 libhtml-form-perl libhtml-format-perl
+  libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
+  libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
+  libhttp-message-perl libhttp-negotiate-perl libidn11 libijs-0.35
+  libio-html-perl libio-socket-ssl-perl libjbig2dec0 libjs-jquery libkpathsea6
+  liblcms2-2 libllvm12 liblwp-mediatypes-perl liblwp-protocol-https-perl
+  libmailtools-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl
+  libnspr4 libnss3 libopenjp2-7 libpciaccess0 libpdfbox-java
+  libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev libpoppler97 libptexenc1
+  libqpdf26 libruby2.7 libsensors-config libsensors5 libsynctex2 libteckit0
+  libtexlua53 libtexluajit2 libtext-unidecode-perl libtimedate-perl
+  libtry-tiny-perl liburi-perl libutempter0 libvulkan1 libwayland-client0
+  libwoff1 libwww-perl libwww-robotrules-perl libx11-xcb1 libxaw7
+  libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0
+  libxcb-shape0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxfixes3 libxi6
+  libxinerama1 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl
+  libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl
+  libxml-sax-perl libxmu6 libxpm4 libxrandr2 libxshmfence1 libxtst6 libxv1
+  libxxf86dga1 libxxf86vm1 libzzip-0-13 lmodern mesa-vulkan-drivers netbase
+  pandoc pandoc-citeproc pandoc-data perl-openssl-defaults poppler-data
+  preview-latex-style qpdf rake ruby ruby-minitest ruby-net-telnet
+  ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration
+  t1utils tcl tcl8.6 teckit tex-common tex-gyre texinfo texlive-base
+  texlive-binaries texlive-fonts-extra texlive-fonts-extra-links
+  texlive-fonts-recommended texlive-lang-greek texlive-latex-base
+  texlive-latex-extra texlive-latex-recommended texlive-luatex
+  texlive-pictures texlive-plain-generic texlive-science texlive-xetex tipa tk
+  tk8.6 uuid-dev x11-utils xbitmaps xfonts-encodings xfonts-utils xterm
+The following packages will be upgraded:
+  libexpat1 libuuid1
+2 upgraded, 215 newly installed, 0 to remove and 91 not upgraded.
+Need to get 834 MB of archives.
+After this operation, 2,899 MB of additional disk space will be used.
+Get:1 http://archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1,805 kB]
+Get:2 http://archive.ubuntu.com/ubuntu focal/main amd64 fonts-lato all 2.0-2 [2,698 kB]
+Get:3 http://archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1,475 kB]
+Get:4 http://archive.ubuntu.com/ubuntu focal/universe amd64 tex-common all 6.13 [32.7 kB]
+Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuuid1 amd64 2.34-0.1ubuntu9.3 [19.9 kB]
+Get:6 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libexpat1 amd64 2.2.9-1ubuntu0.4 [74.4 kB]
+Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 netbase all 6.1 [13.1 kB]
+Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-common all 2.4.107-8ubuntu1~20.04.2 [5,396 B]
+Get:9 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm2 amd64 2.4.107-8ubuntu1~20.04.2 [34.1 kB]
+Get:10 http://archive.ubuntu.com/ubuntu focal/main amd64 libedit2 amd64 3.1-20191231-1 [87.0 kB]
+Get:11 http://archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6,333 kB]
+Get:12 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.5 [681 kB]
+Get:13 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libavahi-common-data amd64 0.7-4ubuntu7.1 [21.4 kB]
+Get:14 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libavahi-common3 amd64 0.7-4ubuntu7.1 [21.7 kB]
+Get:15 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libavahi-client3 amd64 0.7-4ubuntu7.1 [25.5 kB]
+Get:16 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libcups2 amd64 2.3.1-9ubuntu1.2 [233 kB]
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+Unpacking libglvnd0:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
+Selecting previously unselected package libglx0:amd64.
+Preparing to unpack .../204-libglx0_1.3.2-1~ubuntu0.20.04.2_amd64.deb ...
+Unpacking libglx0:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
+Selecting previously unselected package libgl1:amd64.
+Preparing to unpack .../205-libgl1_1.3.2-1~ubuntu0.20.04.2_amd64.deb ...
+Unpacking libgl1:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
+Selecting previously unselected package x11-utils.
+Preparing to unpack .../206-x11-utils_7.7+5_amd64.deb ...
+Unpacking x11-utils (7.7+5) ...
+Selecting previously unselected package xbitmaps.
+Preparing to unpack .../207-xbitmaps_1.1.1-2_all.deb ...
+Unpacking xbitmaps (1.1.1-2) ...
+Selecting previously unselected package xterm.
+Preparing to unpack .../208-xterm_353-1ubuntu1.20.04.2_amd64.deb ...
+Unpacking xterm (353-1ubuntu1.20.04.2) ...
+Selecting previously unselected package libauthen-sasl-perl.
+Preparing to unpack .../209-libauthen-sasl-perl_2.1600-1_all.deb ...
+Unpacking libauthen-sasl-perl (2.1600-1) ...
+Selecting previously unselected package libghc-pandoc-citeproc-data.
+Preparing to unpack .../210-libghc-pandoc-citeproc-data_0.15.0.1-1build4_all.deb ...
+Unpacking libghc-pandoc-citeproc-data (0.15.0.1-1build4) ...
+Selecting previously unselected package pandoc-citeproc.
+Preparing to unpack .../211-pandoc-citeproc_0.15.0.1-1build4_amd64.deb ...
+Unpacking pandoc-citeproc (0.15.0.1-1build4) ...
+Setting up libexpat1:amd64 (2.2.9-1ubuntu0.4) ...
+Setting up javascript-common (11) ...
+Setting up tk8.6 (8.6.10-1) ...
+Setting up libxcb-dri3-0:amd64 (1.14-2) ...
+Setting up liblcms2-2:amd64 (2.9-4) ...
+Setting up fonts-gfs-didot (1.1-6) ...
+Setting up fonts-gfs-artemisia (1.1-5) ...
+Setting up fonts-sil-gentium-basic (1.102-1) ...
+Setting up libx11-xcb1:amd64 (2:1.6.9-2ubuntu1.2) ...
+Setting up libpciaccess0:amd64 (0.16-0ubuntu1) ...
+Setting up fonts-cantarell (0.111-2) ...
+Setting up tcl8.6 (8.6.10+dfsg-1) ...
+Setting up libxmu6:amd64 (2:1.1.3-0ubuntu1) ...
+Setting up fonts-ebgaramond (0.016-1ubuntu1) ...
+Setting up libharfbuzz-icu0:amd64 (2.6.4-1ubuntu4) ...
+Setting up fonts-lato (2.0-2) ...
+Setting up fonts-junicode (1.002-2) ...
+Setting up libxcb-xfixes0:amd64 (1.14-2) ...
+Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ...
+Setting up libxpm4:amd64 (1:3.5.12-1) ...
+Setting up libqpdf26:amd64 (9.1.1-1ubuntu0.1) ...
+Setting up fonts-gfs-porson (1.1-6) ...
+Setting up libxi6:amd64 (2:1.7.10-0ubuntu1) ...
+Setting up libfont-afm-perl (1.20-2) ...
+Setting up libwoff1:amd64 (1.0.2-1build2) ...
+Setting up ruby-power-assert (1.1.7-1) ...
+Setting up libtexlua53:amd64 (2019.20190605.51237-3build2) ...
+Setting up libglvnd0:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
+Setting up fonts-adf-berenis (0.20190904-1.1) ...
+Setting up libxtst6:amd64 (2:1.2.3-1) ...
+Setting up libhtml-tagset-perl (3.20-4) ...
+Setting up libijs-0.35:amd64 (0.35-15) ...
+Setting up libauthen-sasl-perl (2.1600-1) ...
+Setting up libxcb-glx0:amd64 (1.14-2) ...
+Setting up libtexluajit2:amd64 (2019.20190605.51237-3build2) ...
+Setting up libfontbox-java (1:1.8.16-2) ...
+Setting up libedit2:amd64 (3.1-20191231-1) ...
+Setting up liblwp-mediatypes-perl (6.04-1) ...
+Setting up fonts-freefont-otf (20120503-10) ...
+Setting up libxcb-shape0:amd64 (1.14-2) ...
+Setting up libtry-tiny-perl (0.30-1) ...
+Setting up libsensors-config (1:3.6.0-2ubuntu1.1) ...
+Setting up libxxf86dga1:amd64 (2:1.1.5-0ubuntu1) ...
+Setting up perl-openssl-defaults:amd64 (4) ...
+Setting up fonts-freefont-ttf (20120503-10) ...
+Setting up fonts-gfs-solomos (1.1-5) ...
+Setting up libxml-namespacesupport-perl (1.12-1) ...
+Setting up fonts-comfortaa (3.001-3) ...
+Setting up libencode-locale-perl (1.05-1) ...
+Setting up rubygems-integration (1.16) ...
+Setting up libzzip-0-13:amd64 (0.13.62-3.2ubuntu1) ...
+Setting up fonts-sil-gentiumplus-compact (5.000-2) ...
+Setting up libxaw7:amd64 (2:1.0.13-1) ...
+Setting up libghc-pandoc-citeproc-data (0.15.0.1-1build4) ...
+Setting up fonts-roboto-unhinted (2:0~20170802-3) ...
+Setting up fonts-urw-base35 (20170801.1-3) ...
+Setting up fonts-open-sans (1.11-1) ...
+Setting up fonts-sil-gentiumplus (5.000-2) ...
+Setting up fonts-gfs-neohellenic (1.1-6) ...
+Setting up fonts-gfs-olga (1.1-5) ...
+Setting up fonts-oflb-asana-math (000.907-6) ...
+Setting up libxxf86vm1:amd64 (1:1.1.4-1build1) ...
+Setting up poppler-data (0.4.9-2) ...
+Setting up libfreetype-dev:amd64 (2.10.1-2ubuntu0.1) ...
+Setting up libxcb-present0:amd64 (1.14-2) ...
+Setting up fonts-crosextra-carlito (20130920-1) ...
+Setting up ruby-minitest (5.13.0-1) ...
+Setting up fonts-adf-accanthis (0.20190904-1.1) ...
+Setting up tex-common (6.13) ...
+update-language: texlive-base not installed and configured, doing nothing!
+Setting up fonts-sil-gentium (20081126:1.03-2) ...
+Setting up libxml-sax-base-perl (1.09-1) ...
+Setting up fonts-adf-universalis (0.20190904-1.1) ...
+Setting up libbibutils6 (6.2-1) ...
+Setting up libfontenc1:amd64 (1:1.1.4-0ubuntu1) ...
+Setting up libexpat1-dev:amd64 (2.2.9-1ubuntu0.4) ...
+Setting up fonts-stix (1.1.1-4) ...
+Setting up ruby-test-unit (3.3.5-1) ...
+Setting up libdata-dump-perl (1.23-1) ...
+Setting up libnspr4:amd64 (2:4.25-1) ...
+Setting up libxfixes3:amd64 (1:5.0.3-2) ...
+Setting up libxcb-sync1:amd64 (1.14-2) ...
+Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ...
+Setting up fonts-go (0~20170330-1) ...
+Setting up libidn11:amd64 (1.33-2.2ubuntu2) ...
+Setting up libteckit0:amd64 (2.5.8+ds2-5ubuntu2) ...
+Setting up uuid-dev:amd64 (2.34-0.1ubuntu9.3) ...
+Setting up libapache-pom-java (18-1) ...
+Setting up libavahi-common-data:amd64 (0.7-4ubuntu7.1) ...
+Setting up libllvm12:amd64 (1:12.0.0-3ubuntu1~20.04.5) ...
+Setting up qpdf (9.1.1-1ubuntu0.1) ...
+Setting up ruby-net-telnet (0.1.1-2) ...
+Setting up fonts-cabin (1.5-3) ...
+Setting up xfonts-encodings (1:1.0.5-0ubuntu1) ...
+Setting up t1utils (1.41-3) ...
+Setting up libxinerama1:amd64 (2:1.1.4-2) ...
+Setting up libxv1:amd64 (2:1.0.11-1) ...
+Setting up libio-html-perl (1.001-1) ...
+Setting up libxrandr2:amd64 (2:1.5.2-0ubuntu1) ...
+Setting up fonts-texgyre (20180621-3) ...
+Setting up libsensors5:amd64 (1:3.6.0-2ubuntu1.1) ...
+Setting up fonts-linuxlibertine (5.3.0-4) ...
+Setting up libglapi-mesa:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
+Setting up libkpathsea6:amd64 (2019.20190605.51237-3build2) ...
+Setting up libvulkan1:amd64 (1.2.131.2-1) ...
+Setting up libtimedate-perl (2.3200-1) ...
+Setting up fonts-croscore (20200323-1build1~ubuntu20.04.1) ...
+Setting up libutempter0:amd64 (1.1.6-4) ...
+Setting up libxcb-dri2-0:amd64 (1.14-2) ...
+Setting up fonts-dejavu-extra (2.37-1) ...
+Setting up fonts-gfs-baskerville (1.1-5) ...
+Setting up libxshmfence1:amd64 (1.3-1) ...
+Setting up libxcb-randr0:amd64 (1.14-2) ...
+Setting up tcl (8.6.9+1) ...
+Setting up fonts-gfs-complutum (1.1-6) ...
+Setting up fonts-crosextra-caladea (20130214-2) ...
+Setting up fonts-lmodern (2.004.5-6) ...
+Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ...
+Setting up netbase (6.1) ...
+Setting up fonts-ebgaramond-extra (0.016-1ubuntu1) ...
+Setting up fonts-lobster (2.0-2) ...
+Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ...
+Setting up libxkbfile1:amd64 (1:1.1.0-1) ...
+Setting up pandoc-data (2.5-3build2) ...
+Setting up libjs-jquery (3.3.1~dfsg-3) ...
+Setting up libtext-unidecode-perl (1.30-1) ...
+Setting up tk (8.6.9+1) ...
+Setting up libdrm-common (2.4.107-8ubuntu1~20.04.2) ...
+Setting up libxcomposite1:amd64 (1:0.4.5-1) ...
+Setting up fonts-adf-gillius (0.20190904-1.1) ...
+Setting up ruby-xmlrpc (0.3.0-2) ...
+Setting up fonts-noto-core (20200323-1build1~ubuntu20.04.1) ...
+Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ...
+Setting up liburi-perl (1.76-2) ...
+Setting up xbitmaps (1.1.1-2) ...
+Setting up libsynctex2:amd64 (2019.20190605.51237-3build2) ...
+Setting up libwayland-client0:amd64 (1.18.0-1) ...
+Setting up libnet-ssleay-perl (1.88-2ubuntu1) ...
+Setting up libgs9-common (9.50~dfsg-5ubuntu4.5) ...
+Setting up teckit (2.5.8+ds2-5ubuntu2) ...
+Setting up libhttp-date-perl (6.05-1) ...
+Setting up pandoc-citeproc (0.15.0.1-1build4) ...
+Setting up libfile-listing-perl (6.04-1) ...
+Setting up libpdfbox-java (1:1.8.16-2) ...
+Setting up preview-latex-style (11.91-2ubuntu2) ...
+Setting up libcommons-parent-java (43-1) ...
+Setting up libavahi-common3:amd64 (0.7-4ubuntu7.1) ...
+Setting up libcommons-logging-java (1.2-2) ...
+Setting up libnet-http-perl (6.19-1) ...
+Setting up libnss3:amd64 (2:3.49.1-1ubuntu1.7) ...
+Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ...
+Setting up xfonts-utils (1:7.7+6) ...
+Setting up libxml-sax-perl (1.02+dfsg-1) ...
+update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
+update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
+
+Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
+Setting up fonts-lobstertwo (2.0-2) ...
+Setting up libfreetype6-dev:amd64 (2.10.1-2ubuntu0.1) ...
+Setting up libptexenc1:amd64 (2019.20190605.51237-3build2) ...
+Setting up pandoc (2.5-3build2) ...
+Setting up texlive-fonts-extra-links (2019.202000218-1) ...
+Setting up libxml-libxml-perl (2.0134+dfsg-1build1) ...
+update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
+update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
+update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
+Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
+Setting up libwww-robotrules-perl (6.02-1) ...
+Setting up libdrm2:amd64 (2.4.107-8ubuntu1~20.04.2) ...
+Setting up texlive-binaries (2019.20190605.51237-3build2) ...
+update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
+update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
+update-alternatives: warning: skip creation of /usr/share/man/man1/bibtex.1.gz because associated file /usr/share/man/man1/bibtex.original.1.gz (of link group bibtex) doesn't exist
+Setting up lmodern (2.004.5-6) ...
+Setting up libhtml-parser-perl (3.72-5) ...
+Setting up xterm (353-1ubuntu1.20.04.2) ...
+update-alternatives: using /usr/bin/xterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
+update-alternatives: warning: skip creation of /usr/share/man/man1/x-terminal-emulator.1.gz because associated file /usr/share/man/man1/xterm.1.gz (of link group x-terminal-emulator) doesn't exist
+update-alternatives: using /usr/bin/lxterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
+update-alternatives: warning: skip creation of /usr/share/man/man1/x-terminal-emulator.1.gz because associated file /usr/share/man/man1/lxterm.1.gz (of link group x-terminal-emulator) doesn't exist
+Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ...
+Setting up texlive-base (2019.20200218-1) ...
+tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
+tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
+tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
+tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
+tl-paper: setting paper size for dvipdfmx to letter: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
+tl-paper: setting paper size for dvips to letter: /var/lib/texmf/dvips/config/config-paper.ps
+tl-paper: setting paper size for pdftex to letter: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
+tl-paper: setting paper size for xdvi to letter: /var/lib/texmf/xdvi/XDvi-paper
+Setting up tex-gyre (20180621-3) ...
+Setting up libavahi-client3:amd64 (0.7-4ubuntu7.1) ...
+Setting up libio-socket-ssl-perl (2.067-1) ...
+Setting up libhttp-message-perl (6.22-1) ...
+Setting up libdrm-amdgpu1:amd64 (2.4.107-8ubuntu1~20.04.2) ...
+Setting up libhtml-form-perl (6.07-1) ...
+Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ...
+Setting up mesa-vulkan-drivers:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
+Setting up libhttp-negotiate-perl (6.01-1) ...
+Setting up libdrm-nouveau2:amd64 (2.4.107-8ubuntu1~20.04.2) ...
+Setting up libfontconfig1-dev:amd64 (2.13.1-2ubuntu3) ...
+Setting up libhttp-cookies-perl (6.08-1) ...
+Setting up texlive-luatex (2019.20200218-1) ...
+Setting up libdrm-radeon1:amd64 (2.4.107-8ubuntu1~20.04.2) ...
+Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ...
+Setting up libhtml-tree-perl (5.07-2) ...
+Setting up libdrm-intel1:amd64 (2.4.107-8ubuntu1~20.04.2) ...
+Setting up libgl1-mesa-dri:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
+Setting up texlive-plain-generic (2019.202000218-1) ...
+Setting up texlive-lang-greek (2019.20200218-1) ...
+Setting up libhtml-format-perl (2.12-1) ...
+Setting up libnet-smtp-ssl-perl (1.04-1) ...
+Setting up texlive-latex-base (2019.20200218-1) ...
+Setting up libmailtools-perl (2.21-1) ...
+Setting up texlive-fonts-extra (2019.202000218-1) ...
+Setting up texlive-latex-recommended (2019.20200218-1) ...
+Setting up texinfo (6.7.0.dfsg.2-5) ...
+Running mktexlsr. This may take some time. ... done.
+Setting up texlive-pictures (2019.20200218-1) ...
+Setting up libcups2:amd64 (2.3.1-9ubuntu1.2) ...
+Setting up libhttp-daemon-perl (6.06-1) ...
+Setting up texlive-fonts-recommended (2019.20200218-1) ...
+Setting up tipa (2:1.3-20) ...
+Regenerating '/var/lib/texmf/fmtutil.cnf-DEBIAN'... done.
+Regenerating '/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST'... done.
+update-fmtutil has updated the following file(s):
+	/var/lib/texmf/fmtutil.cnf-DEBIAN
+	/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST
+If you want to activate the changes in the above file(s),
+you should run fmtutil-sys or fmtutil.
+Setting up libglx-mesa0:amd64 (21.2.6-0ubuntu0.1~20.04.2) ...
+Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.5) ...
+Setting up libglx0:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
+Setting up texlive-science (2019.202000218-1) ...
+Setting up dvisvgm (2.8.1-1build1) ...
+Setting up texlive-latex-extra (2019.202000218-1) ...
+Setting up ghostscript (9.50~dfsg-5ubuntu4.5) ...
+Setting up libgl1:amd64 (1.3.2-1~ubuntu0.20.04.2) ...
+Setting up x11-utils (7.7+5) ...
+Setting up texlive-xetex (2019.20200218-1) ...
+Setting up ruby (1:2.7+1) ...
+Setting up rake (13.0.1-4) ...
+Setting up liblwp-protocol-https-perl (6.07-2ubuntu2) ...
+Setting up libwww-perl (6.43-1) ...
+Setting up libruby2.7:amd64 (2.7.0-5ubuntu1.7) ...
+Setting up libxml-parser-perl (2.46-1) ...
+Setting up ruby2.7 (2.7.0-5ubuntu1.7) ...
+Setting up libxml-sax-expat-perl (0.51-1) ...
+update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50...
+update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
+Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
+Processing triggers for fontconfig (2.13.1-2ubuntu3) ...
+Processing triggers for mime-support (3.64ubuntu1) ...
+Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
+Processing triggers for tex-common (6.13) ...
+Running updmap-sys. This may take some time... done.
+Running mktexlsr /var/lib/texmf ... done.
+Building format(s) --all.
+	This may take some time... done.
+
+
+
+
+================
+
+apt install
+
+================
+
+
+
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+build-essential is already the newest version (12.8ubuntu1.1).
+build-essential set to manually installed.
+The following additional packages will be installed:
+  libblkid-dev libblkid1 libcairo-gobject2 libcairo-script-interpreter2
+  libcurl3-gnutls libffi-dev libgcrypt20-dev libgit2-28 libglib2.0-dev
+  libglib2.0-dev-bin libgpg-error-dev libhttp-parser-dev libhttp-parser2.9
+  libice-dev liblzo2-2 libmbedcrypto3 libmbedtls-dev libmbedtls12
+  libmbedx509-0 libmount-dev libmount1 libpixman-1-dev libpthread-stubs0-dev
+  libselinux1-dev libsepol1 libsepol1-dev libsm-dev libssh2-1 libssh2-1-dev
+  libssl1.1 libx11-dev libxau-dev libxcb-render0-dev libxcb-shm0-dev
+  libxcb1-dev libxdmcp-dev libxext-dev libxml2 libxrender-dev
+  python3-distutils python3-lib2to3 x11proto-core-dev x11proto-dev
+  x11proto-xext-dev xorg-sgml-doctools xtrans-dev
+Suggested packages:
+  libcairo2-doc libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev
+  libldap2-dev librtmp-dev libgcrypt20-doc libgirepository1.0-dev
+  libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils
+  libice-doc libmbedtls-doc libsm-doc libssl-doc libx11-doc libxcb-doc
+  libxext-doc libxt-doc
+The following NEW packages will be installed:
+  libblkid-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2-dev
+  libcurl3-gnutls libcurl4-gnutls-dev libffi-dev libgcrypt20-dev libgit2-28
+  libgit2-dev libglib2.0-dev libglib2.0-dev-bin libgpg-error-dev
+  libhttp-parser-dev libhttp-parser2.9 libice-dev liblzo2-2 libmbedcrypto3
+  libmbedtls-dev libmbedtls12 libmbedx509-0 libmount-dev libpixman-1-dev
+  libpthread-stubs0-dev libselinux1-dev libsepol1-dev libsm-dev libssh2-1
+  libssh2-1-dev libssl-dev libx11-dev libxau-dev libxcb-render0-dev
+  libxcb-shm0-dev libxcb1-dev libxdmcp-dev libxext-dev libxml2-dev
+  libxrender-dev libxt-dev python3-distutils python3-lib2to3 x11proto-core-dev
+  x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev
+The following packages will be upgraded:
+  libblkid1 libmount1 libsepol1 libssl1.1 libxml2
+5 upgraded, 47 newly installed, 0 to remove and 86 not upgraded.
+Need to get 13.9 MB of archives.
+After this operation, 55.1 MB of additional disk space will be used.
+Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libblkid1 amd64 2.34-0.1ubuntu9.3 [136 kB]
+Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libmount1 amd64 2.34-0.1ubuntu9.3 [149 kB]
+Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libsepol1 amd64 3.0-1ubuntu0.1 [252 kB]
+Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libssl1.1 amd64 1.1.1f-1ubuntu2.15 [1,321 kB]
+Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2 amd64 2.9.10+dfsg-5ubuntu0.20.04.3 [640 kB]
+Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libcairo-gobject2 amd64 1.16.0-4ubuntu1 [17.2 kB]
+Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 liblzo2-2 amd64 2.10-2 [50.8 kB]
+Get:8 http://archive.ubuntu.com/ubuntu focal/main amd64 libcairo-script-interpreter2 amd64 1.16.0-4ubuntu1 [54.2 kB]
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+Setting up libx11-dev:amd64 (2:1.6.9-2ubuntu1.2) ...
+Setting up libxcb-shm0-dev:amd64 (1.14-2) ...
+Setting up libxt-dev:amd64 (1:1.1.5-1) ...
+Setting up libxcb-render0-dev:amd64 (1.14-2) ...
+Setting up libxext-dev:amd64 (2:1.3.4-0ubuntu1) ...
+Setting up libxrender-dev:amd64 (1:0.9.10-1) ...
+Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ...
+Processing triggers for libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.4) ...
+Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
+Setting up libcairo2-dev:amd64 (1.16.0-4ubuntu1) ...
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 1 / 14: BiocManager
+
+================
+
+
+
+
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+trying URL 'http://cran.us.r-project.org/src/contrib/BiocManager_1.30.18.tar.gz'
+Content type 'application/x-gzip' length 289602 bytes (282 KB)
+==================================================
+downloaded 282 KB
+
+foundpkgs: BiocManager, /tmp/RtmpoYg5e0/downloaded_packages/BiocManager_1.30.18.tar.gz
+files: /tmp/RtmpoYg5e0/downloaded_packages/BiocManager_1.30.18.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpoYg5e0/downloaded_packages/BiocManager_1.30.18.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpoYg5e0/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 2 / 14: devtools
+
+================
+
+
+
+
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+also installing the dependencies â€˜utf8â€™, â€˜pillarâ€™, â€˜pkgconfigâ€™, â€˜vctrsâ€™, â€˜askpassâ€™, â€˜credentialsâ€™, â€˜sysâ€™, â€˜zipâ€™, â€˜gitcredsâ€™, â€˜iniâ€™, â€˜fastmapâ€™, â€˜highrâ€™, â€˜xfunâ€™, â€˜diffobjâ€™, â€˜fansiâ€™, â€˜rematch2â€™, â€˜tibbleâ€™, â€˜cliprâ€™, â€˜crayonâ€™, â€˜curlâ€™, â€˜gertâ€™, â€˜ghâ€™, â€˜glueâ€™, â€˜jsonliteâ€™, â€˜purrrâ€™, â€˜rappdirsâ€™, â€˜rprojrootâ€™, â€˜whiskerâ€™, â€˜yamlâ€™, â€˜processxâ€™, â€˜R6â€™, â€˜mimeâ€™, â€˜opensslâ€™, â€˜cachemâ€™, â€˜prettyunitsâ€™, â€˜digestâ€™, â€˜xopenâ€™, â€˜brewâ€™, â€˜commonmarkâ€™, â€˜knitrâ€™, â€˜stringiâ€™, â€˜stringrâ€™, â€˜xml2â€™, â€˜cpp11â€™, â€˜brioâ€™, â€˜evaluateâ€™, â€˜magrittrâ€™, â€˜praiseâ€™, â€˜psâ€™, â€˜waldoâ€™, â€˜usethisâ€™, â€˜callrâ€™, â€˜cliâ€™, â€˜descâ€™, â€˜ellipsisâ€™, â€˜fsâ€™, â€˜httrâ€™, â€˜lifecycleâ€™, â€˜memoiseâ€™, â€˜pkgbuildâ€™, â€˜pkgloadâ€™, â€˜rcmdcheckâ€™, â€˜remotesâ€™, â€˜rlangâ€™, â€˜roxygen2â€™, â€˜rstudioapiâ€™, â€˜rversionsâ€™, â€˜sessioninfoâ€™, â€˜testthatâ€™, â€˜withrâ€™
+
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+==================================================
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+
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+files: /tmp/RtmpokYjfu/downloaded_packages/utf8_1.2.2.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/pillar_1.7.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/pkgconfig_2.0.3.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/vctrs_0.4.1.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/askpass_1.1.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/credentials_1.3.2.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/sys_3.4.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/zip_2.2.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/gitcreds_0.1.1.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/ini_0.3.1.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/fastmap_1.1.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/highr_0.9.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/xfun_0.31.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/diffobj_0.3.5.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/fansi_1.0.3.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/rematch2_2.1.2.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/tibble_3.1.7.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/clipr_0.8.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/crayon_1.5.1.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/curl_4.3.2.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/gert_1.6.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/gh_1.3.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/glue_1.6.2.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/jsonlite_1.8.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/purrr_0.3.4.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/rappdirs_0.3.3.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/rprojroot_2.0.3.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/whisker_0.4.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/yaml_2.3.5.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/processx_3.6.1.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/R6_2.5.1.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/mime_0.12.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/openssl_2.0.2.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/cachem_1.0.6.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/prettyunits_1.1.1.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/digest_0.6.29.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/xopen_1.0.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/brew_1.0-7.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/commonmark_1.8.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/knitr_1.39.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/stringi_1.7.6.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/stringr_1.4.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/xml2_1.3.3.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/cpp11_0.4.2.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/brio_1.1.3.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/evaluate_0.15.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/magrittr_2.0.3.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/praise_1.0.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/ps_1.7.1.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/waldo_0.4.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/usethis_2.1.6.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/callr_3.7.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/cli_3.3.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/desc_1.4.1.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/ellipsis_0.3.2.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/fs_1.5.2.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/httr_1.4.3.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/lifecycle_1.0.1.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/memoise_2.0.1.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/pkgbuild_1.3.1.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/pkgload_1.3.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/rcmdcheck_1.4.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/remotes_2.4.2.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/rlang_1.0.3.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/roxygen2_7.2.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/rstudioapi_0.13.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/rversions_2.1.1.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/sessioninfo_1.2.2.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/testthat_3.1.4.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/withr_2.5.0.tar.gz, 
+	/tmp/RtmpokYjfu/downloaded_packages/devtools_2.4.3.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/utf8_1.2.2.tar.gz''
+2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/pkgconfig_2.0.3.tar.gz''
+3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/sys_3.4.tar.gz''
+4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/zip_2.2.0.tar.gz''
+5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/gitcreds_0.1.1.tar.gz''
+6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/ini_0.3.1.tar.gz''
+7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/fastmap_1.1.0.tar.gz''
+8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/xfun_0.31.tar.gz''
+9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/fansi_1.0.3.tar.gz''
+10): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/clipr_0.8.0.tar.gz''
+11): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/crayon_1.5.1.tar.gz''
+12): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/curl_4.3.2.tar.gz''
+13): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/glue_1.6.2.tar.gz''
+14): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/jsonlite_1.8.0.tar.gz''
+15): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/rappdirs_0.3.3.tar.gz''
+16): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/rprojroot_2.0.3.tar.gz''
+17): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/whisker_0.4.tar.gz''
+18): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/yaml_2.3.5.tar.gz''
+19): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/R6_2.5.1.tar.gz''
+20): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/mime_0.12.tar.gz''
+21): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/prettyunits_1.1.1.tar.gz''
+22): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/digest_0.6.29.tar.gz''
+23): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/brew_1.0-7.tar.gz''
+24): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/commonmark_1.8.0.tar.gz''
+25): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/stringi_1.7.6.tar.gz''
+26): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/xml2_1.3.3.tar.gz''
+27): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/cpp11_0.4.2.tar.gz''
+28): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/brio_1.1.3.tar.gz''
+29): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/evaluate_0.15.tar.gz''
+30): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/magrittr_2.0.3.tar.gz''
+31): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/praise_1.0.0.tar.gz''
+32): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/ps_1.7.1.tar.gz''
+33): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/fs_1.5.2.tar.gz''
+34): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/remotes_2.4.2.tar.gz''
+35): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/rlang_1.0.3.tar.gz''
+36): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/rstudioapi_0.13.tar.gz''
+37): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/withr_2.5.0.tar.gz''
+38): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/askpass_1.1.tar.gz''
+39): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/highr_0.9.tar.gz''
+40): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/diffobj_0.3.5.tar.gz''
+41): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/purrr_0.3.4.tar.gz''
+42): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/processx_3.6.1.tar.gz''
+43): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/cachem_1.0.6.tar.gz''
+44): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/stringr_1.4.0.tar.gz''
+45): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/cli_3.3.0.tar.gz''
+46): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/ellipsis_0.3.2.tar.gz''
+47): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/lifecycle_1.0.1.tar.gz''
+48): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/rversions_2.1.1.tar.gz''
+49): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/vctrs_0.4.1.tar.gz''
+50): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/openssl_2.0.2.tar.gz''
+51): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/xopen_1.0.0.tar.gz''
+52): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/knitr_1.39.tar.gz''
+53): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/callr_3.7.0.tar.gz''
+54): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/desc_1.4.1.tar.gz''
+55): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/memoise_2.0.1.tar.gz''
+56): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/sessioninfo_1.2.2.tar.gz''
+57): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/pillar_1.7.0.tar.gz''
+58): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/credentials_1.3.2.tar.gz''
+59): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/httr_1.4.3.tar.gz''
+60): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/pkgbuild_1.3.1.tar.gz''
+61): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/pkgload_1.3.0.tar.gz''
+62): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/tibble_3.1.7.tar.gz''
+63): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/gert_1.6.0.tar.gz''
+64): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/gh_1.3.0.tar.gz''
+65): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/rcmdcheck_1.4.0.tar.gz''
+66): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/roxygen2_7.2.0.tar.gz''
+67): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/rematch2_2.1.2.tar.gz''
+68): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/usethis_2.1.6.tar.gz''
+69): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/waldo_0.4.0.tar.gz''
+70): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/testthat_3.1.4.tar.gz''
+71): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpokYjfu/downloaded_packages/devtools_2.4.3.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpokYjfu/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 3 / 14: Cairo
+
+================
+
+
+
+
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+trying URL 'http://cran.us.r-project.org/src/contrib/Cairo_1.5-15.tar.gz'
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+==================================================
+downloaded 89 KB
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+foundpkgs: Cairo, /tmp/RtmpE9tDuY/downloaded_packages/Cairo_1.5-15.tar.gz
+files: /tmp/RtmpE9tDuY/downloaded_packages/Cairo_1.5-15.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpE9tDuY/downloaded_packages/Cairo_1.5-15.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpE9tDuY/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 4 / 14: dplyr
+
+================
+
+
+
+
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+also installing the dependencies â€˜genericsâ€™, â€˜tidyselectâ€™
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+trying URL 'http://cran.us.r-project.org/src/contrib/generics_0.1.2.tar.gz'
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+==================================================
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+Content type 'application/x-gzip' length 92085 bytes (89 KB)
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+==================================================
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+foundpkgs: generics, tidyselect, dplyr, /tmp/RtmpsNavcE/downloaded_packages/generics_0.1.2.tar.gz, /tmp/RtmpsNavcE/downloaded_packages/tidyselect_1.1.2.tar.gz, /tmp/RtmpsNavcE/downloaded_packages/dplyr_1.0.9.tar.gz
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+	/tmp/RtmpsNavcE/downloaded_packages/tidyselect_1.1.2.tar.gz, 
+	/tmp/RtmpsNavcE/downloaded_packages/dplyr_1.0.9.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsNavcE/downloaded_packages/generics_0.1.2.tar.gz''
+2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsNavcE/downloaded_packages/tidyselect_1.1.2.tar.gz''
+3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsNavcE/downloaded_packages/dplyr_1.0.9.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpsNavcE/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 5 / 14: ggplot2
+
+================
+
+
+
+
+now dyn.load("/usr/local/lib/R/site-library/fs/libs/fs.so") ...
+now dyn.load("/usr/local/lib/R/site-library/cli/libs/cli.so") ...
+now dyn.load("/usr/local/lib/R/site-library/rlang/libs/rlang.so") ...
+now dyn.load("/usr/local/lib/R/site-library/ellipsis/libs/ellipsis.so") ...
+now dyn.load("/usr/local/lib/R/site-library/fastmap/libs/fastmap.so") ...
+now dyn.load("/usr/local/lib/R/site-library/cachem/libs/cachem.so") ...
+now dyn.load("/usr/local/lib/R/site-library/processx/libs/processx.so") ...
+now dyn.load("/usr/local/lib/R/site-library/ps/libs/ps.so") ...
+now dyn.load("/usr/lib/R/library/tools/libs/tools.so") ...
+now dyn.load("/usr/local/lib/R/site-library/glue/libs/glue.so") ...
+now dyn.load("/usr/local/lib/R/site-library/magrittr/libs/magrittr.so") ...
+now dyn.load("/usr/local/lib/R/site-library/purrr/libs/purrr.so") ...
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+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+trying URL 'http://cran.us.r-project.org/src/contrib/colorspace_2.0-3.tar.gz'
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+==================================================
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+==================================================
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+	/tmp/Rtmpyg6cOg/downloaded_packages/gtable_0.3.0.tar.gz
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+3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyg6cOg/downloaded_packages/RColorBrewer_1.1-3.tar.gz''
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+7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyg6cOg/downloaded_packages/gtable_0.3.0.tar.gz''
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+9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyg6cOg/downloaded_packages/scales_1.2.0.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/Rtmpyg6cOg/downloaded_packagesâ€™
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpyg6cOg/remotes70ee123f08c7/ggplot2''
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 6 / 14: HiCcompare
+
+================
+
+
+
+
+now dyn.load("/usr/lib/R/library/tools/libs/tools.so") ...
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+Installing package(s) 'BiocVersion', 'HiCcompare'
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
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+==================================================
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+trying URL 'https://cloud.r-project.org/src/contrib/gtools_3.9.2.2.tar.gz'
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+trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/HiCcompare_1.16.0.tar.gz'
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+files: /tmp/Rtmpi50vdq/downloaded_packages/formatR_1.12.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/limma_3.50.3.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/listenv_0.8.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/parallelly_1.32.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/MatrixGenerics_1.6.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/DelayedArray_0.20.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/RCurl_1.98-1.7.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/GenomeInfoDbData_1.2.7.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/zlibbioc_1.40.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/lambda.r_1.2.4.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/futile.options_1.0.1.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/marray_1.72.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/impute_1.68.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/snowfall_1.84-6.1.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/R.oo_1.25.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/R.methodsS3_1.8.2.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/Biostrings_2.62.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/bitops_1.0-7.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/Rhtslib_1.26.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/future_1.26.1.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/globals_0.15.1.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/SummarizedExperiment_1.24.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/Rcpp_1.0.8.3.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/BiocGenerics_0.40.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/GenomeInfoDb_1.30.1.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/XVector_0.34.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/futile.logger_1.4.3.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/snow_0.4-4.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/BH_1.78.0-0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/Biobase_2.54.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/CGHbase_1.54.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/CGHcall_2.56.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/DNAcopy_1.68.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/matrixStats_0.62.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/R.utils_2.12.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/Rsamtools_2.10.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/future.apply_1.9.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/Rhdf5lib_1.16.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/rhdf5filters_1.6.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/data.table_1.14.2.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/gridExtra_2.3.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/InteractionSet_1.22.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/GenomicRanges_1.46.1.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/IRanges_2.28.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/S4Vectors_0.32.4.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/BiocParallel_1.28.3.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/QDNAseq_1.30.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/pheatmap_1.0.12.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/gtools_3.9.2.2.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/rhdf5_2.38.1.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/BiocVersion_3.14.0.tar.gz, 
+	/tmp/Rtmpi50vdq/downloaded_packages/HiCcompare_1.16.0.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/formatR_1.12.tar.gz''
+2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/limma_3.50.3.tar.gz''
+3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/listenv_0.8.0.tar.gz''
+4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/parallelly_1.32.0.tar.gz''
+5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/GenomeInfoDbData_1.2.7.tar.gz''
+6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/zlibbioc_1.40.0.tar.gz''
+7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/futile.options_1.0.1.tar.gz''
+8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/impute_1.68.0.tar.gz''
+9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/R.methodsS3_1.8.2.tar.gz''
+10): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/bitops_1.0-7.tar.gz''
+11): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/globals_0.15.1.tar.gz''
+12): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/Rcpp_1.0.8.3.tar.gz''
+13): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/BiocGenerics_0.40.0.tar.gz''
+14): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/snow_0.4-4.tar.gz''
+15): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/BH_1.78.0-0.tar.gz''
+16): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/DNAcopy_1.68.0.tar.gz''
+17): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/matrixStats_0.62.0.tar.gz''
+18): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/Rhdf5lib_1.16.0.tar.gz''
+19): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/data.table_1.14.2.tar.gz''
+20): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/gridExtra_2.3.tar.gz''
+21): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/pheatmap_1.0.12.tar.gz''
+22): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/gtools_3.9.2.2.tar.gz''
+23): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/BiocVersion_3.14.0.tar.gz''
+24): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/MatrixGenerics_1.6.0.tar.gz''
+25): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/RCurl_1.98-1.7.tar.gz''
+26): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/lambda.r_1.2.4.tar.gz''
+27): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/marray_1.72.0.tar.gz''
+28): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/snowfall_1.84-6.1.tar.gz''
+29): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/R.oo_1.25.0.tar.gz''
+30): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/Rhtslib_1.26.0.tar.gz''
+31): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/future_1.26.1.tar.gz''
+32): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/Biobase_2.54.0.tar.gz''
+33): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/rhdf5filters_1.6.0.tar.gz''
+34): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/S4Vectors_0.32.4.tar.gz''
+35): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/futile.logger_1.4.3.tar.gz''
+36): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/CGHbase_1.54.0.tar.gz''
+37): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/R.utils_2.12.0.tar.gz''
+38): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/future.apply_1.9.0.tar.gz''
+39): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/IRanges_2.28.0.tar.gz''
+40): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/rhdf5_2.38.1.tar.gz''
+41): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/DelayedArray_0.20.0.tar.gz''
+42): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/GenomeInfoDb_1.30.1.tar.gz''
+43): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/XVector_0.34.0.tar.gz''
+44): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/CGHcall_2.56.0.tar.gz''
+45): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/BiocParallel_1.28.3.tar.gz''
+46): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/Biostrings_2.62.0.tar.gz''
+47): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/GenomicRanges_1.46.1.tar.gz''
+48): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/SummarizedExperiment_1.24.0.tar.gz''
+49): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/Rsamtools_2.10.0.tar.gz''
+50): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/InteractionSet_1.22.0.tar.gz''
+51): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/QDNAseq_1.30.0.tar.gz''
+52): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpi50vdq/downloaded_packages/HiCcompare_1.16.0.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/Rtmpi50vdq/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 7 / 14: lubridate
+
+================
+
+
+
+
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+trying URL 'http://cran.us.r-project.org/src/contrib/lubridate_1.8.0.tar.gz'
+Content type 'application/x-gzip' length 475704 bytes (464 KB)
+==================================================
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+
+foundpkgs: lubridate, /tmp/RtmpUnrAH3/downloaded_packages/lubridate_1.8.0.tar.gz
+files: /tmp/RtmpUnrAH3/downloaded_packages/lubridate_1.8.0.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpUnrAH3/downloaded_packages/lubridate_1.8.0.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpUnrAH3/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 8 / 14: parallel
+
+================
+
+
+
+
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+Warning: package â€˜parallelâ€™ is a base package, and should not be updated
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 9 / 14: reshape2
+
+================
+
+
+
+
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+also installing the dependency â€˜plyrâ€™
+
+trying URL 'http://cran.us.r-project.org/src/contrib/plyr_1.8.7.tar.gz'
+Content type 'application/x-gzip' length 401481 bytes (392 KB)
+==================================================
+downloaded 392 KB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/reshape2_1.4.4.tar.gz'
+Content type 'application/x-gzip' length 37307 bytes (36 KB)
+==================================================
+downloaded 36 KB
+
+foundpkgs: plyr, reshape2, /tmp/RtmpeaUoLe/downloaded_packages/plyr_1.8.7.tar.gz, /tmp/RtmpeaUoLe/downloaded_packages/reshape2_1.4.4.tar.gz
+files: /tmp/RtmpeaUoLe/downloaded_packages/plyr_1.8.7.tar.gz, 
+	/tmp/RtmpeaUoLe/downloaded_packages/reshape2_1.4.4.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeaUoLe/downloaded_packages/plyr_1.8.7.tar.gz''
+2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeaUoLe/downloaded_packages/reshape2_1.4.4.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpeaUoLe/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 10 / 14: binb
+
+================
+
+
+
+
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+also installing the dependencies â€˜sassâ€™, â€˜base64encâ€™, â€˜bslibâ€™, â€˜htmltoolsâ€™, â€˜jquerylibâ€™, â€˜tinytexâ€™, â€˜rmarkdownâ€™
+
+trying URL 'http://cran.us.r-project.org/src/contrib/sass_0.4.1.tar.gz'
+Content type 'application/x-gzip' length 3022870 bytes (2.9 MB)
+==================================================
+downloaded 2.9 MB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/base64enc_0.1-3.tar.gz'
+Content type 'application/x-gzip' length 7833 bytes
+==================================================
+downloaded 7833 bytes
+
+trying URL 'http://cran.us.r-project.org/src/contrib/bslib_0.3.1.tar.gz'
+Content type 'application/x-gzip' length 4908277 bytes (4.7 MB)
+==================================================
+downloaded 4.7 MB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/htmltools_0.5.2.tar.gz'
+Content type 'application/x-gzip' length 124510 bytes (121 KB)
+==================================================
+downloaded 121 KB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/jquerylib_0.1.4.tar.gz'
+Content type 'application/x-gzip' length 520207 bytes (508 KB)
+==================================================
+downloaded 508 KB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/tinytex_0.40.tar.gz'
+Content type 'application/x-gzip' length 32846 bytes (32 KB)
+==================================================
+downloaded 32 KB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/rmarkdown_2.14.tar.gz'
+Content type 'application/x-gzip' length 3241807 bytes (3.1 MB)
+==================================================
+downloaded 3.1 MB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/binb_0.0.6.tar.gz'
+Content type 'application/x-gzip' length 2999419 bytes (2.9 MB)
+==================================================
+downloaded 2.9 MB
+
+foundpkgs: sass, base64enc, bslib, htmltools, jquerylib, tinytex, rmarkdown, binb, /tmp/Rtmp8GVRgn/downloaded_packages/sass_0.4.1.tar.gz, /tmp/Rtmp8GVRgn/downloaded_packages/base64enc_0.1-3.tar.gz, /tmp/Rtmp8GVRgn/downloaded_packages/bslib_0.3.1.tar.gz, /tmp/Rtmp8GVRgn/downloaded_packages/htmltools_0.5.2.tar.gz, /tmp/Rtmp8GVRgn/downloaded_packages/jquerylib_0.1.4.tar.gz, /tmp/Rtmp8GVRgn/downloaded_packages/tinytex_0.40.tar.gz, /tmp/Rtmp8GVRgn/downloaded_packages/rmarkdown_2.14.tar.gz, /tmp/Rtmp8GVRgn/downloaded_packages/binb_0.0.6.tar.gz
+files: /tmp/Rtmp8GVRgn/downloaded_packages/sass_0.4.1.tar.gz, 
+	/tmp/Rtmp8GVRgn/downloaded_packages/base64enc_0.1-3.tar.gz, 
+	/tmp/Rtmp8GVRgn/downloaded_packages/bslib_0.3.1.tar.gz, 
+	/tmp/Rtmp8GVRgn/downloaded_packages/htmltools_0.5.2.tar.gz, 
+	/tmp/Rtmp8GVRgn/downloaded_packages/jquerylib_0.1.4.tar.gz, 
+	/tmp/Rtmp8GVRgn/downloaded_packages/tinytex_0.40.tar.gz, 
+	/tmp/Rtmp8GVRgn/downloaded_packages/rmarkdown_2.14.tar.gz, 
+	/tmp/Rtmp8GVRgn/downloaded_packages/binb_0.0.6.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/base64enc_0.1-3.tar.gz''
+2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/tinytex_0.40.tar.gz''
+3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/htmltools_0.5.2.tar.gz''
+4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/sass_0.4.1.tar.gz''
+5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/jquerylib_0.1.4.tar.gz''
+6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/bslib_0.3.1.tar.gz''
+7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/rmarkdown_2.14.tar.gz''
+8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8GVRgn/downloaded_packages/binb_0.0.6.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/Rtmp8GVRgn/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 11 / 14: linl
+
+================
+
+
+
+
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+trying URL 'http://cran.us.r-project.org/src/contrib/linl_0.0.4.tar.gz'
+Content type 'application/x-gzip' length 76937 bytes (75 KB)
+==================================================
+downloaded 75 KB
+
+foundpkgs: linl, /tmp/RtmpWd1rP5/downloaded_packages/linl_0.0.4.tar.gz
+files: /tmp/RtmpWd1rP5/downloaded_packages/linl_0.0.4.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpWd1rP5/downloaded_packages/linl_0.0.4.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpWd1rP5/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 12 / 14: pinp
+
+================
+
+
+
+
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+trying URL 'http://cran.us.r-project.org/src/contrib/pinp_0.0.10.tar.gz'
+Content type 'application/x-gzip' length 214270 bytes (209 KB)
+==================================================
+downloaded 209 KB
+
+foundpkgs: pinp, /tmp/RtmpH1rdED/downloaded_packages/pinp_0.0.10.tar.gz
+files: /tmp/RtmpH1rdED/downloaded_packages/pinp_0.0.10.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpH1rdED/downloaded_packages/pinp_0.0.10.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpH1rdED/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 13 / 14: tint
+
+================
+
+
+
+
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+trying URL 'http://cran.us.r-project.org/src/contrib/tint_0.1.3.tar.gz'
+Content type 'application/x-gzip' length 1937029 bytes (1.8 MB)
+==================================================
+downloaded 1.8 MB
+
+foundpkgs: tint, /tmp/RtmpebubFb/downloaded_packages/tint_0.1.3.tar.gz
+files: /tmp/RtmpebubFb/downloaded_packages/tint_0.1.3.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpebubFb/downloaded_packages/tint_0.1.3.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpebubFb/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGE INSTALLATION 14 / 14: pdftools
+
+================
+
+
+
+
+system (cmd0): /usr/lib/R/bin/R CMD INSTALL
+also installing the dependency â€˜qpdfâ€™
+
+trying URL 'http://cran.us.r-project.org/src/contrib/qpdf_1.2.0.tar.gz'
+Content type 'application/x-gzip' length 321641 bytes (314 KB)
+==================================================
+downloaded 314 KB
+
+trying URL 'http://cran.us.r-project.org/src/contrib/pdftools_3.2.1.tar.gz'
+Content type 'application/x-gzip' length 936059 bytes (914 KB)
+==================================================
+downloaded 914 KB
+
+foundpkgs: qpdf, pdftools, /tmp/RtmpvWe7AD/downloaded_packages/qpdf_1.2.0.tar.gz, /tmp/RtmpvWe7AD/downloaded_packages/pdftools_3.2.1.tar.gz
+files: /tmp/RtmpvWe7AD/downloaded_packages/qpdf_1.2.0.tar.gz, 
+	/tmp/RtmpvWe7AD/downloaded_packages/pdftools_3.2.1.tar.gz
+1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpvWe7AD/downloaded_packages/qpdf_1.2.0.tar.gz''
+2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpvWe7AD/downloaded_packages/pdftools_3.2.1.tar.gz''
+
+The downloaded source packages are in
+	â€˜/tmp/RtmpvWe7AD/downloaded_packagesâ€™
+
+
+
+
+================
+
+R PACKAGES INSTALLED
+
+================
+
+
+
+
+SEE ALSO THE installed_r_packages.csv TABLE IN THE ROOT OF THE CONTAINER
+
+
+now dyn.load("/usr/lib/R/library/tools/libs/tools.so") ...
+                                  Package                       LibPath
+askpass                           askpass /usr/local/lib/R/site-library
+base64enc                       base64enc /usr/local/lib/R/site-library
+BH                                     BH /usr/local/lib/R/site-library
+binb                                 binb /usr/local/lib/R/site-library
+Biobase                           Biobase /usr/local/lib/R/site-library
+BiocGenerics                 BiocGenerics /usr/local/lib/R/site-library
+BiocManager                   BiocManager /usr/local/lib/R/site-library
+BiocParallel                 BiocParallel /usr/local/lib/R/site-library
+BiocVersion                   BiocVersion /usr/local/lib/R/site-library
+Biostrings                     Biostrings /usr/local/lib/R/site-library
+bitops                             bitops /usr/local/lib/R/site-library
+brew                                 brew /usr/local/lib/R/site-library
+brio                                 brio /usr/local/lib/R/site-library
+bslib                               bslib /usr/local/lib/R/site-library
+cachem                             cachem /usr/local/lib/R/site-library
+Cairo                               Cairo /usr/local/lib/R/site-library
+callr                               callr /usr/local/lib/R/site-library
+CGHbase                           CGHbase /usr/local/lib/R/site-library
+CGHcall                           CGHcall /usr/local/lib/R/site-library
+cli                                   cli /usr/local/lib/R/site-library
+clipr                               clipr /usr/local/lib/R/site-library
+colorspace                     colorspace /usr/local/lib/R/site-library
+commonmark                     commonmark /usr/local/lib/R/site-library
+cpp11                               cpp11 /usr/local/lib/R/site-library
+crayon                             crayon /usr/local/lib/R/site-library
+credentials                   credentials /usr/local/lib/R/site-library
+curl                                 curl /usr/local/lib/R/site-library
+data.table                     data.table /usr/local/lib/R/site-library
+DelayedArray                 DelayedArray /usr/local/lib/R/site-library
+desc                                 desc /usr/local/lib/R/site-library
+devtools                         devtools /usr/local/lib/R/site-library
+diffobj                           diffobj /usr/local/lib/R/site-library
+digest                             digest /usr/local/lib/R/site-library
+DNAcopy                           DNAcopy /usr/local/lib/R/site-library
+docopt                             docopt /usr/local/lib/R/site-library
+dplyr                               dplyr /usr/local/lib/R/site-library
+ellipsis                         ellipsis /usr/local/lib/R/site-library
+evaluate                         evaluate /usr/local/lib/R/site-library
+fansi                               fansi /usr/local/lib/R/site-library
+farver                             farver /usr/local/lib/R/site-library
+fastmap                           fastmap /usr/local/lib/R/site-library
+formatR                           formatR /usr/local/lib/R/site-library
+fs                                     fs /usr/local/lib/R/site-library
+futile.logger               futile.logger /usr/local/lib/R/site-library
+futile.options             futile.options /usr/local/lib/R/site-library
+future                             future /usr/local/lib/R/site-library
+future.apply                 future.apply /usr/local/lib/R/site-library
+generics                         generics /usr/local/lib/R/site-library
+GenomeInfoDb                 GenomeInfoDb /usr/local/lib/R/site-library
+GenomeInfoDbData         GenomeInfoDbData /usr/local/lib/R/site-library
+GenomicRanges               GenomicRanges /usr/local/lib/R/site-library
+gert                                 gert /usr/local/lib/R/site-library
+ggplot2                           ggplot2 /usr/local/lib/R/site-library
+gh                                     gh /usr/local/lib/R/site-library
+gitcreds                         gitcreds /usr/local/lib/R/site-library
+globals                           globals /usr/local/lib/R/site-library
+glue                                 glue /usr/local/lib/R/site-library
+gridExtra                       gridExtra /usr/local/lib/R/site-library
+gtable                             gtable /usr/local/lib/R/site-library
+gtools                             gtools /usr/local/lib/R/site-library
+HiCcompare                     HiCcompare /usr/local/lib/R/site-library
+highr                               highr /usr/local/lib/R/site-library
+htmltools                       htmltools /usr/local/lib/R/site-library
+httr                                 httr /usr/local/lib/R/site-library
+impute                             impute /usr/local/lib/R/site-library
+ini                                   ini /usr/local/lib/R/site-library
+InteractionSet             InteractionSet /usr/local/lib/R/site-library
+IRanges                           IRanges /usr/local/lib/R/site-library
+isoband                           isoband /usr/local/lib/R/site-library
+jquerylib                       jquerylib /usr/local/lib/R/site-library
+jsonlite                         jsonlite /usr/local/lib/R/site-library
+knitr                               knitr /usr/local/lib/R/site-library
+labeling                         labeling /usr/local/lib/R/site-library
+lambda.r                         lambda.r /usr/local/lib/R/site-library
+lifecycle                       lifecycle /usr/local/lib/R/site-library
+limma                               limma /usr/local/lib/R/site-library
+linl                                 linl /usr/local/lib/R/site-library
+listenv                           listenv /usr/local/lib/R/site-library
+lubridate                       lubridate /usr/local/lib/R/site-library
+magrittr                         magrittr /usr/local/lib/R/site-library
+marray                             marray /usr/local/lib/R/site-library
+MatrixGenerics             MatrixGenerics /usr/local/lib/R/site-library
+matrixStats                   matrixStats /usr/local/lib/R/site-library
+memoise                           memoise /usr/local/lib/R/site-library
+mime                                 mime /usr/local/lib/R/site-library
+munsell                           munsell /usr/local/lib/R/site-library
+openssl                           openssl /usr/local/lib/R/site-library
+parallelly                     parallelly /usr/local/lib/R/site-library
+pdftools                         pdftools /usr/local/lib/R/site-library
+pheatmap                         pheatmap /usr/local/lib/R/site-library
+pillar                             pillar /usr/local/lib/R/site-library
+pinp                                 pinp /usr/local/lib/R/site-library
+pkgbuild                         pkgbuild /usr/local/lib/R/site-library
+pkgconfig                       pkgconfig /usr/local/lib/R/site-library
+pkgload                           pkgload /usr/local/lib/R/site-library
+plyr                                 plyr /usr/local/lib/R/site-library
+praise                             praise /usr/local/lib/R/site-library
+prettyunits                   prettyunits /usr/local/lib/R/site-library
+processx                         processx /usr/local/lib/R/site-library
+ps                                     ps /usr/local/lib/R/site-library
+purrr                               purrr /usr/local/lib/R/site-library
+QDNAseq                           QDNAseq /usr/local/lib/R/site-library
+qpdf                                 qpdf /usr/local/lib/R/site-library
+R.methodsS3                   R.methodsS3 /usr/local/lib/R/site-library
+R.oo                                 R.oo /usr/local/lib/R/site-library
+R.utils                           R.utils /usr/local/lib/R/site-library
+R6                                     R6 /usr/local/lib/R/site-library
+rappdirs                         rappdirs /usr/local/lib/R/site-library
+rcmdcheck                       rcmdcheck /usr/local/lib/R/site-library
+RColorBrewer                 RColorBrewer /usr/local/lib/R/site-library
+Rcpp                                 Rcpp /usr/local/lib/R/site-library
+RCurl                               RCurl /usr/local/lib/R/site-library
+rematch2                         rematch2 /usr/local/lib/R/site-library
+remotes                           remotes /usr/local/lib/R/site-library
+reshape2                         reshape2 /usr/local/lib/R/site-library
+rhdf5                               rhdf5 /usr/local/lib/R/site-library
+rhdf5filters                 rhdf5filters /usr/local/lib/R/site-library
+Rhdf5lib                         Rhdf5lib /usr/local/lib/R/site-library
+Rhtslib                           Rhtslib /usr/local/lib/R/site-library
+rlang                               rlang /usr/local/lib/R/site-library
+rmarkdown                       rmarkdown /usr/local/lib/R/site-library
+roxygen2                         roxygen2 /usr/local/lib/R/site-library
+rprojroot                       rprojroot /usr/local/lib/R/site-library
+Rsamtools                       Rsamtools /usr/local/lib/R/site-library
+rstudioapi                     rstudioapi /usr/local/lib/R/site-library
+rversions                       rversions /usr/local/lib/R/site-library
+S4Vectors                       S4Vectors /usr/local/lib/R/site-library
+sass                                 sass /usr/local/lib/R/site-library
+scales                             scales /usr/local/lib/R/site-library
+sessioninfo                   sessioninfo /usr/local/lib/R/site-library
+snow                                 snow /usr/local/lib/R/site-library
+snowfall                         snowfall /usr/local/lib/R/site-library
+stringi                           stringi /usr/local/lib/R/site-library
+stringr                           stringr /usr/local/lib/R/site-library
+SummarizedExperiment SummarizedExperiment /usr/local/lib/R/site-library
+sys                                   sys /usr/local/lib/R/site-library
+testthat                         testthat /usr/local/lib/R/site-library
+tibble                             tibble /usr/local/lib/R/site-library
+tidyselect                     tidyselect /usr/local/lib/R/site-library
+tint                                 tint /usr/local/lib/R/site-library
+tinytex                           tinytex /usr/local/lib/R/site-library
+usethis                           usethis /usr/local/lib/R/site-library
+utf8                                 utf8 /usr/local/lib/R/site-library
+vctrs                               vctrs /usr/local/lib/R/site-library
+viridisLite                   viridisLite /usr/local/lib/R/site-library
+waldo                               waldo /usr/local/lib/R/site-library
+whisker                           whisker /usr/local/lib/R/site-library
+withr                               withr /usr/local/lib/R/site-library
+xfun                                 xfun /usr/local/lib/R/site-library
+xml2                                 xml2 /usr/local/lib/R/site-library
+xopen                               xopen /usr/local/lib/R/site-library
+XVector                           XVector /usr/local/lib/R/site-library
+yaml                                 yaml /usr/local/lib/R/site-library
+zip                                   zip /usr/local/lib/R/site-library
+zlibbioc                         zlibbioc /usr/local/lib/R/site-library
+littler                           littler       /usr/lib/R/site-library
+base                                 base            /usr/lib/R/library
+boot                                 boot            /usr/lib/R/library
+class                               class            /usr/lib/R/library
+cluster                           cluster            /usr/lib/R/library
+codetools                       codetools            /usr/lib/R/library
+compiler                         compiler            /usr/lib/R/library
+datasets                         datasets            /usr/lib/R/library
+foreign                           foreign            /usr/lib/R/library
+graphics                         graphics            /usr/lib/R/library
+grDevices                       grDevices            /usr/lib/R/library
+grid                                 grid            /usr/lib/R/library
+KernSmooth                     KernSmooth            /usr/lib/R/library
+lattice                           lattice            /usr/lib/R/library
+MASS                                 MASS            /usr/lib/R/library
+Matrix                             Matrix            /usr/lib/R/library
+methods                           methods            /usr/lib/R/library
+mgcv                                 mgcv            /usr/lib/R/library
+nlme                                 nlme            /usr/lib/R/library
+nnet                                 nnet            /usr/lib/R/library
+parallel                         parallel            /usr/lib/R/library
+rpart                               rpart            /usr/lib/R/library
+spatial                           spatial            /usr/lib/R/library
+splines                           splines            /usr/lib/R/library
+stats                               stats            /usr/lib/R/library
+stats4                             stats4            /usr/lib/R/library
+survival                         survival            /usr/lib/R/library
+tcltk                               tcltk            /usr/lib/R/library
+tools                               tools            /usr/lib/R/library
+utils                               utils            /usr/lib/R/library
+                      Version    Priority
+askpass                   1.1        <NA>
+base64enc               0.1-3        <NA>
+BH                   1.78.0-0        <NA>
+binb                    0.0.6        <NA>
+Biobase                2.54.0        <NA>
+BiocGenerics           0.40.0        <NA>
+BiocManager           1.30.18        <NA>
+BiocParallel           1.28.3        <NA>
+BiocVersion            3.14.0        <NA>
+Biostrings             2.62.0        <NA>
+bitops                  1.0-7        <NA>
+brew                    1.0-7        <NA>
+brio                    1.1.3        <NA>
+bslib                   0.3.1        <NA>
+cachem                  1.0.6        <NA>
+Cairo                  1.5-15        <NA>
+callr                   3.7.0        <NA>
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+snowfall             1.84-6.1        <NA>
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+sys                       3.4        <NA>
+testthat                3.1.4        <NA>
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+tint                    0.1.3        <NA>
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+boot                   1.3-28 recommended
+class                  7.3-20 recommended
+cluster                 2.1.2 recommended
+codetools              0.2-18 recommended
+compiler                4.1.2        base
+datasets                4.1.2        base
+foreign                0.8-82 recommended
+graphics                4.1.2        base
+grDevices               4.1.2        base
+grid                    4.1.2        base
+KernSmooth            2.23-20 recommended
+lattice               0.20-45 recommended
+MASS                   7.3-55 recommended
+Matrix                  1.4-0 recommended
+methods                 4.1.2        base
+mgcv                   1.8-38 recommended
+nlme                  3.1-155 recommended
+nnet                   7.3-17 recommended
+parallel                4.1.2        base
+rpart                  4.1.16 recommended
+spatial                7.3-15 recommended
+splines                 4.1.2        base
+stats                   4.1.2        base
+stats4                  4.1.2        base
+survival               3.2-13 recommended
+tcltk                   4.1.2        base
+tools                   4.1.2        base
+utils                   4.1.2        base
+
+
+
+
+================
+
+R PACKAGES NOT INSTALLED
+
+================
+
+
+
+
+ALL THE PACKAGES HAVE BEEN INSTALLED
+
+
+
+
+
+
+================
+
+apt-get autoremove
+
+================
+
+
+
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 86 not upgraded.
+
+
+
+
+================
+
+apt-get clean
+
+================
+
+
+
+
+
+
+
+
+================
+
+rm
+
+================
+
+
+
+
+
+
+
+
+================
+
+LINUX PACKAGES INSTALLED
+
+================
+
+
+
+
+procps:
+  Installed: 2:3.3.16-1ubuntu2.3
+  Candidate: 2:3.3.16-1ubuntu2.3
+  Version table:
+ *** 2:3.3.16-1ubuntu2.3 100
+        100 /var/lib/dpkg/status
+libfontconfig1-dev:
+  Installed: 2.13.1-2ubuntu3
+  Candidate: 2.13.1-2ubuntu3
+  Version table:
+ *** 2.13.1-2ubuntu3 100
+        100 /var/lib/dpkg/status
+ghostscript:
+  Installed: 9.50~dfsg-5ubuntu4.5
+  Candidate: 9.50~dfsg-5ubuntu4.5
+  Version table:
+ *** 9.50~dfsg-5ubuntu4.5 100
+        100 /var/lib/dpkg/status
+lmodern:
+  Installed: 2.004.5-6
+  Candidate: 2.004.5-6
+  Version table:
+ *** 2.004.5-6 100
+        100 /var/lib/dpkg/status
+pandoc:
+  Installed: 2.5-3build2
+  Candidate: 2.5-3build2
+  Version table:
+ *** 2.5-3build2 100
+        100 /var/lib/dpkg/status
+pandoc-citeproc:
+  Installed: 0.15.0.1-1build4
+  Candidate: 0.15.0.1-1build4
+  Version table:
+ *** 0.15.0.1-1build4 100
+        100 /var/lib/dpkg/status
+qpdf:
+  Installed: 9.1.1-1ubuntu0.1
+  Candidate: 9.1.1-1ubuntu0.1
+  Version table:
+ *** 9.1.1-1ubuntu0.1 100
+        100 /var/lib/dpkg/status
+texinfo:
+  Installed: 6.7.0.dfsg.2-5
+  Candidate: 6.7.0.dfsg.2-5
+  Version table:
+ *** 6.7.0.dfsg.2-5 100
+        100 /var/lib/dpkg/status
+texlive-fonts-extra:
+  Installed: 2019.202000218-1
+  Candidate: 2019.202000218-1
+  Version table:
+ *** 2019.202000218-1 100
+        100 /var/lib/dpkg/status
+texlive-fonts-recommended:
+  Installed: 2019.20200218-1
+  Candidate: 2019.20200218-1
+  Version table:
+ *** 2019.20200218-1 100
+        100 /var/lib/dpkg/status
+texlive-latex-extra:
+  Installed: 2019.202000218-1
+  Candidate: 2019.202000218-1
+  Version table:
+ *** 2019.202000218-1 100
+        100 /var/lib/dpkg/status
+texlive-latex-recommended:
+  Installed: 2019.20200218-1
+  Candidate: 2019.20200218-1
+  Version table:
+ *** 2019.20200218-1 100
+        100 /var/lib/dpkg/status
+texlive-luatex:
+  Installed: 2019.20200218-1
+  Candidate: 2019.20200218-1
+  Version table:
+ *** 2019.20200218-1 100
+        100 /var/lib/dpkg/status
+texlive-plain-generic:
+  Installed: 2019.202000218-1
+  Candidate: 2019.202000218-1
+  Version table:
+ *** 2019.202000218-1 100
+        100 /var/lib/dpkg/status
+texlive-science:
+  Installed: 2019.202000218-1
+  Candidate: 2019.202000218-1
+  Version table:
+ *** 2019.202000218-1 100
+        100 /var/lib/dpkg/status
+texlive-xetex:
+  Installed: 2019.20200218-1
+  Candidate: 2019.20200218-1
+  Version table:
+ *** 2019.20200218-1 100
+        100 /var/lib/dpkg/status
+libpoppler-cpp-dev:
+  Installed: 0.86.1-0ubuntu1
+  Candidate: 0.86.1-0ubuntu1
+  Version table:
+ *** 0.86.1-0ubuntu1 100
+        100 /var/lib/dpkg/status
+build-essential:
+  Installed: 12.8ubuntu1.1
+  Candidate: 12.8ubuntu1.1
+  Version table:
+ *** 12.8ubuntu1.1 100
+        100 /var/lib/dpkg/status
+libcurl4-gnutls-dev:
+  Installed: 7.68.0-1ubuntu2.12
+  Candidate: 7.68.0-1ubuntu2.12
+  Version table:
+ *** 7.68.0-1ubuntu2.12 100
+        100 /var/lib/dpkg/status
+libxml2-dev:
+  Installed: 2.9.10+dfsg-5ubuntu0.20.04.3
+  Candidate: 2.9.10+dfsg-5ubuntu0.20.04.3
+  Version table:
+ *** 2.9.10+dfsg-5ubuntu0.20.04.3 100
+        100 /var/lib/dpkg/status
+libssl-dev:
+  Installed: 1.1.1f-1ubuntu2.15
+  Candidate: 1.1.1f-1ubuntu2.15
+  Version table:
+ *** 1.1.1f-1ubuntu2.15 100
+        100 /var/lib/dpkg/status
+libgit2-dev:
+  Installed: 0.28.4+dfsg.1-2
+  Candidate: 0.28.4+dfsg.1-2
+  Version table:
+ *** 0.28.4+dfsg.1-2 100
+        100 /var/lib/dpkg/status
+libcairo2-dev:
+  Installed: 1.16.0-4ubuntu1
+  Candidate: 1.16.0-4ubuntu1
+  Version table:
+ *** 1.16.0-4ubuntu1 100
+        100 /var/lib/dpkg/status
+libxt-dev:
+  Installed: 1:1.1.5-1
+  Candidate: 1:1.1.5-1
+  Version table:
+ *** 1:1.1.5-1 100
+        100 /var/lib/dpkg/status
diff --git a/installed_r_packages.csv b/installed_r_packages.csv
new file mode 100644
index 0000000000000000000000000000000000000000..bea978d3c9bf405ff1caf0ab989aca629be96368
--- /dev/null
+++ b/installed_r_packages.csv
@@ -0,0 +1,186 @@
+Package;LibPath;Version;Priority;Depends;Imports;LinkingTo;Suggests;Enhances;License;License_is_FOSS;License_restricts_use;OS_type;MD5sum;NeedsCompilation;Built
+askpass;/usr/local/lib/R/site-library;1.1;NA;NA;sys (>= 2.1);NA;testthat;NA;MIT + file LICENSE;NA;NA;NA;NA;yes;4.1.2
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+BH;/usr/local/lib/R/site-library;1.78.0-0;NA;NA;NA;NA;NA;NA;BSL-1.0;NA;NA;NA;NA;no;4.1.2
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+BiocManager;/usr/local/lib/R/site-library;1.30.18;NA;NA;utils;NA;BiocVersion, remotes, rmarkdown, testthat, withr, curl, knitr;NA;Artistic-2.0;NA;NA;NA;NA;no;4.1.2
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