diff --git a/R/v4.0.5/extended/v2.0/Dockerfile b/R/v4.0.5/extended/v2.0/Dockerfile
index 1a64ef7605dd9de7de4d90b27fbd5c0f05ee506c..ee8c60598dff7c638df8a5379da56bc7250f8f8c 100644
--- a/R/v4.0.5/extended/v2.0/Dockerfile
+++ b/R/v4.0.5/extended/v2.0/Dockerfile
@@ -114,7 +114,9 @@ RUN echo "\n\n\n\n================\n\napt-get update\n\n================\n\n\n\n
&& apt-get clean \
| tee -a building.log ; echo "\n\n\n\n================\n\nrm\n\n================\n\n\n\n" >> building.log \
&& rm -rf /var/lib/apt/lists/* \
- | tee -a building.log
+ | tee -a building.log \
+ && echo "\n\n\n\n================\n\ninstalled packages\n\n================\n\n\n\n" >> /building.log \
+ && apt-cache policy procps libfontconfig1-dev gettext build-essential libcurl4-gnutls-dev libxml2-dev libssl-dev libgit2-dev libcairo2-dev libxt-dev >> /building.log
# dependencies=NA means c("Depends", "Imports", "LinkingTo"). Do no use TRUE -> install suggesting packages which inflates tremendously the image.
diff --git a/README.md b/README.md
index 6f7f20383a3c7a162d31178e8b453daa63fccdb8..0ba0bdab3d4d219cb42e0a5b8f7b4225740e575c 100644
--- a/README.md
+++ b/README.md
@@ -70,6 +70,13 @@ Hub-CDB and Institut Pasteur
Use the gitlab tag of the docker image (e.g., gitlab_v5.0) to get the description of the modifications below
+### v7.0
+
+Dockerfiles added: <br />
+ubuntu\v16.04\bowtie2-extended\v1.0 at date 20220106
+ubuntu\v16.04\samtools\v1.14 at date 20220106
+
+
### v6.4
Dockerfiles modified: <br />
diff --git a/ubuntu/v16.04/bash-extended/v3.0/Dockerfile b/ubuntu/v16.04/bash-extended/v3.0/Dockerfile
index c29ea240d08ffb7008187ef243fdbeca79e1274c..9c171db6d5e617532dfc6ea4b7f3f1f0db2aeb76 100644
--- a/ubuntu/v16.04/bash-extended/v3.0/Dockerfile
+++ b/ubuntu/v16.04/bash-extended/v3.0/Dockerfile
@@ -24,16 +24,16 @@ LABEL gitlab.dockerfiles="https://gitlab.pasteur.fr/gmillot/dockerfiles"
# update apt-get
RUN apt-get update --fix-missing \
-&& apt-get upgrade \
-# end update apt-get
-# install the packages
-&& apt-get install -y coreutils=8.25-2ubuntu3~16.04 gawk=1:4.1.3+dfsg-0.1 bc=1.06.95-9build1 git=1:2.7.4-0ubuntu1.10 \
-# end install the packages
-
-# cleaning
-&& apt-get autoremove -y \
-&& apt-get clean \
-&& rm -rf /var/lib/apt/lists/*
+ && apt-get upgrade \
+ # end update apt-get
+ # install the packages
+ && apt-get install -y coreutils=8.25-2ubuntu3~16.04 gawk=1:4.1.3+dfsg-0.1 bc=1.06.95-9build1 git=1:2.7.4-0ubuntu1.10 \
+ # end install the packages
+
+ # cleaning
+ && apt-get autoremove -y \
+ && apt-get clean \
+ && rm -rf /var/lib/apt/lists/*
# https://askubuntu.com/questions/179955/var-lib-apt-lists-is-huge
# folder filled after running sudo apt-get update (or use the Refresh button in a package manager), a list of packages will get downloaded from the Ubuntu servers. These files are then stored in /var/lib/apt/lists/. You can safely remove the contents of that directory as it is recreated when you refresh the package lists. If you remove the files, but do not run apt-get update to fetch the lists, commands like apt-cache will fail to provide information (since the cache is empty).
# end cleaning
diff --git a/ubuntu/v16.04/bowtie2-extended/v1.0/Dockerfile b/ubuntu/v16.04/bowtie2-extended/v1.0/Dockerfile
new file mode 100644
index 0000000000000000000000000000000000000000..0f7b4745676c0c1137924e2b6ed1993efdc79593
--- /dev/null
+++ b/ubuntu/v16.04/bowtie2-extended/v1.0/Dockerfile
@@ -0,0 +1,130 @@
+#########################################################################
+## ##
+## Dockerfile ##
+## Bowtie2 extended ##
+## ##
+## Gael A. Millot ##
+## Bioinformatics and Biostatistics Hub ##
+## Computational Biology Department ##
+## Institut Pasteur Paris ##
+## ##
+#########################################################################
+
+
+
+# to get the log of the building:
+# sudo docker run -ti --entrypoint bash <IMAGE_NAME>
+# cat building.log
+
+# to get all the ubuntu packages:
+# sudo docker run -ti --entrypoint bash <IMAGE_NAME>
+# apt-get update ; apt-cache policy zlib1g liblzma5 libncurses5 libtbb2 perl python
+
+# to export a file from the container:
+# sudo docker container ls -a # to get all the active containers
+# sudo docker cp <containerNAMES>:/building.log </host/path/target>
+
+# samtools
+# http://www.htslib.org/
+# https://github.com/samtools/samtools/tags
+# v1.14
+
+# bowtie2
+# http://bowtie-bio.sf.net/bowtie2
+# v2.3.4.3
+
+
+
+# base image: ubuntu:16.04
+FROM gmillot/bash-extended_v3.0:gitlab_v4.0
+# Warning: the name must be exactly what is written in the docker images interface, or sudo docker image ls
+
+LABEL Gael.Millot=gael.millot@pasteur.fr
+LABEL gitlab.dockerfiles="https://gitlab.pasteur.fr/gmillot/dockerfiles"
+
+
+RUN echo "\n\n\n\n================\n\napt-get update\n\n================\n\n\n\n" > /building.log \
+ && apt-get update --fix-missing \
+ | tee -a /building.log \
+ # samtools install
+ && echo "\n\n\n\n================\n\napt-get install\n\n================\n\n\n\n" >> /building.log \
+ && apt-get install -y \
+ wget \
+ gcc \
+ make \
+ libbz2-dev \
+ zlib1g \
+ zlib1g-dev \
+ liblzma5 \
+ liblzma-dev \
+ libncurses5 \
+ libncurses5-dev \
+ bzip2 \
+ | tee -a /building.log \
+ && echo "\n\n\n\n================\n\nsamtools installation\n\n================\n\n\n\n" >> /building.log \
+ && cd /usr/local/ \
+ && wget -O samtools.tar.bz2 https://github.com/samtools/samtools/releases/download/1.14/samtools-1.14.tar.bz2 \
+ && tar -xjvf samtools.tar.bz2 \
+ && rm -rf samtools.tar.bz2 \
+ && cd samtools-1.14 \
+ && ./configure \
+ && make \
+ && make install \
+ && cd /usr/local \
+ && rm -rf /usr/local/samtools-1.14 \
+ && apt-get remove -y \
+ wget \
+ gcc \
+ make \
+ libbz2-dev \
+ zlib1g-dev \
+ liblzma-dev \
+ libncurses5-dev \
+ bzip2 \
+ # end samtools install
+ # bowtie2 install
+ && echo "\n\n\n\n================\n\napt-get install\n\n================\n\n\n\n" >> /building.log \
+ && apt-get install -y \
+ wget \
+ gcc \
+ g++ \
+ make \
+ libtbb2 \
+ libtbb-dev \
+ zlib1g \
+ zlib1g-dev \
+ perl \
+ python \
+ && echo "\n\n\n\n================\n\nbowtie2 installation\n\n================\n\n\n\n" >> /building.log \
+ && cd /usr/local/ \
+ && wget -O bowtie.tar.gz https://github.com/BenLangmead/bowtie2/archive/v2.3.4.3.tar.gz \
+ && tar -xzvf bowtie.tar.gz \
+ && rm -rf bowtie.tar.gz \
+ && cd bowtie2-2.3.4.3 \
+ && make \
+ && mv bowtie2 bowtie2-align-s bowtie2-align-l bowtie2-build \
+ bowtie2-build-s bowtie2-build-l bowtie2-inspect \
+ bowtie2-inspect-s bowtie2-inspect-l /usr/local/bin/ \
+ && cd /usr/local \
+ && rm -rf /usr/local/bowtie2-2.3.4.3 \
+ && apt-get remove -y \
+ wget \
+ gcc \
+ g++ \
+ make \
+ libtbb-dev \
+ zlib1g-dev \
+ # end bowtie2 install
+ # cleaning
+ && echo "\n\n\n\n================\n\napt-get autoremove\n\n================\n\n\n\n" >> /building.log \
+ && apt-get autoremove -y \
+ | tee -a /building.log ; echo "\n\n\n\n================\n\napt-get clean\n\n================\n\n\n\n" >> /building.log \
+ && apt-get clean \
+ | tee -a /building.log ; echo "\n\n\n\n================\n\nrm\n\n================\n\n\n\n" >> /building.log \
+ && rm -rf /var/lib/apt/lists/* \
+ | tee -a /building.log \
+ && echo "\n\n\n\n================\n\ninstalled packages\n\n================\n\n\n\n" >> /building.log \
+ && apt-cache policy zlib1g liblzma5 libncurses5 libtbb2 perl python >> /building.log
+
+ENTRYPOINT ["/bin/bash"]
+# ENTRYPOINT ["/usr/local/bin/samtools"]
\ No newline at end of file
diff --git a/ubuntu/v16.04/bowtie2-extended/v1.0/building.log b/ubuntu/v16.04/bowtie2-extended/v1.0/building.log
new file mode 100644
index 0000000000000000000000000000000000000000..354ccc8341f668821b56d6978af32e1b42be104d
--- /dev/null
+++ b/ubuntu/v16.04/bowtie2-extended/v1.0/building.log
@@ -0,0 +1,407 @@
+
+
+
+
+================
+
+apt-get update
+
+================
+
+
+
+
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+Get:2 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB]
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+Fetched 19.4 MB in 8s (2331 kB/s)
+Reading package lists...
+
+
+
+
+================
+
+apt-get install
+
+================
+
+
+
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+liblzma5 is already the newest version (5.1.1alpha+20120614-2ubuntu2).
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+zlib1g is already the newest version (1:1.2.8.dfsg-2ubuntu4.3).
+The following additional packages will be installed:
+ binutils bzip2-doc cpp cpp-5 gcc-5 libasan2 libatomic1 libc-dev-bin
+ libc6-dev libcc1-0 libcilkrts5 libgcc-5-dev libgomp1 libisl15 libitm1
+ liblsan0 libmpc3 libmpx0 libquadmath0 libtinfo-dev libtsan0 libubsan0
+ linux-libc-dev manpages manpages-dev
+Suggested packages:
+ binutils-doc cpp-doc gcc-5-locales gcc-multilib autoconf automake libtool
+ flex bison gdb gcc-doc gcc-5-multilib gcc-5-doc libgcc1-dbg libgomp1-dbg
+ libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg libtsan0-dbg
+ libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg glibc-doc
+ liblzma-doc ncurses-doc make-doc man-browser
+The following NEW packages will be installed:
+ binutils bzip2 bzip2-doc cpp cpp-5 gcc gcc-5 libasan2 libatomic1 libbz2-dev
+ libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libgcc-5-dev libgomp1 libisl15
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+ libtinfo-dev libtsan0 libubsan0 linux-libc-dev make manpages manpages-dev
+ wget zlib1g-dev
+0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded.
+Need to get 30.0 MB of archives.
+After this operation, 106 MB of additional disk space will be used.
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+(Reading database ...
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+Unpacking libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
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+Unpacking libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ...
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+Unpacking gcc-5 (5.4.0-6ubuntu1~16.04.12) ...
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+Preparing to unpack .../gcc_4%3a5.3.1-1ubuntu1_amd64.deb ...
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+Selecting previously unselected package libc-dev-bin.
+Preparing to unpack .../libc-dev-bin_2.23-0ubuntu11.3_amd64.deb ...
+Unpacking libc-dev-bin (2.23-0ubuntu11.3) ...
+Selecting previously unselected package linux-libc-dev:amd64.
+Preparing to unpack .../linux-libc-dev_4.4.0-210.242_amd64.deb ...
+Unpacking linux-libc-dev:amd64 (4.4.0-210.242) ...
+Selecting previously unselected package libc6-dev:amd64.
+Preparing to unpack .../libc6-dev_2.23-0ubuntu11.3_amd64.deb ...
+Unpacking libc6-dev:amd64 (2.23-0ubuntu11.3) ...
+Selecting previously unselected package libbz2-dev:amd64.
+Preparing to unpack .../libbz2-dev_1.0.6-8ubuntu0.2_amd64.deb ...
+Unpacking libbz2-dev:amd64 (1.0.6-8ubuntu0.2) ...
+Selecting previously unselected package libtinfo-dev:amd64.
+Preparing to unpack .../libtinfo-dev_6.0+20160213-1ubuntu1_amd64.deb ...
+Unpacking libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ...
+Selecting previously unselected package libncurses5-dev:amd64.
+Preparing to unpack .../libncurses5-dev_6.0+20160213-1ubuntu1_amd64.deb ...
+Unpacking libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ...
+Selecting previously unselected package make.
+Preparing to unpack .../archives/make_4.1-6_amd64.deb ...
+Unpacking make (4.1-6) ...
+Selecting previously unselected package manpages-dev.
+Preparing to unpack .../manpages-dev_4.04-2_all.deb ...
+Unpacking manpages-dev (4.04-2) ...
+Selecting previously unselected package zlib1g-dev:amd64.
+Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4.3_amd64.deb ...
+Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.3) ...
+Selecting previously unselected package liblzma-dev:amd64.
+Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ...
+Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ...
+Processing triggers for libc-bin (2.23-0ubuntu11.3) ...
+Setting up libmpc3:amd64 (1.0.3-1) ...
+Setting up bzip2 (1.0.6-8ubuntu0.2) ...
+Setting up manpages (4.04-2) ...
+Setting up wget (1.17.1-1ubuntu1.5) ...
+Setting up binutils (2.26.1-1ubuntu1~16.04.8) ...
+Setting up bzip2-doc (1.0.6-8ubuntu0.2) ...
+Setting up libisl15:amd64 (0.16.1-1) ...
+Setting up cpp-5 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up cpp (4:5.3.1-1ubuntu1) ...
+Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up gcc-5 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up gcc (4:5.3.1-1ubuntu1) ...
+Setting up libc-dev-bin (2.23-0ubuntu11.3) ...
+Setting up linux-libc-dev:amd64 (4.4.0-210.242) ...
+Setting up libc6-dev:amd64 (2.23-0ubuntu11.3) ...
+Setting up libbz2-dev:amd64 (1.0.6-8ubuntu0.2) ...
+Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ...
+Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ...
+Setting up make (4.1-6) ...
+Setting up manpages-dev (4.04-2) ...
+Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.3) ...
+Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ...
+Processing triggers for libc-bin (2.23-0ubuntu11.3) ...
+
+
+
+
+================
+
+samtools installation
+
+================
+
+
+
+
+
+
+
+
+================
+
+apt-get install
+
+================
+
+
+
+
+
+
+
+
+================
+
+bowtie2 installation
+
+================
+
+
+
+
+
+
+
+
+================
+
+apt-get autoremove
+
+================
+
+
+
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages will be REMOVED:
+ binutils bzip2-doc cpp cpp-5 g++-5 gcc-5 libasan2 libatomic1 libc-dev-bin
+ libc6-dev libcc1-0 libcilkrts5 libgcc-5-dev libgomp1 libisl15 libitm1
+ liblsan0 libmpc3 libmpx0 libquadmath0 libstdc++-5-dev libtinfo-dev libtsan0
+ libubsan0 linux-libc-dev manpages manpages-dev
+0 upgraded, 0 newly installed, 27 to remove and 0 not upgraded.
+After this operation, 141 MB disk space will be freed.
+(Reading database ...
(Reading database ... 5%
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 14479 files and directories currently installed.)
+Removing g++-5 (5.4.0-6ubuntu1~16.04.12) ...
+Removing gcc-5 (5.4.0-6ubuntu1~16.04.12) ...
+Removing binutils (2.26.1-1ubuntu1~16.04.8) ...
+Removing bzip2-doc (1.0.6-8ubuntu0.2) ...
+Removing cpp (4:5.3.1-1ubuntu1) ...
+Removing cpp-5 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libasan2:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libatomic1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libc6-dev:amd64 (2.23-0ubuntu11.3) ...
+Removing libc-dev-bin (2.23-0ubuntu11.3) ...
+Removing libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libgomp1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libisl15:amd64 (0.16.1-1) ...
+Removing libitm1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing liblsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libmpc3:amd64 (1.0.3-1) ...
+Removing libmpx0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ...
+Removing libtsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libubsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing linux-libc-dev:amd64 (4.4.0-210.242) ...
+Removing manpages-dev (4.04-2) ...
+Removing manpages (4.04-2) ...
+Processing triggers for libc-bin (2.23-0ubuntu11.3) ...
+
+
+
+
+================
+
+apt-get clean
+
+================
+
+
+
+
+
+
+
+
+================
+
+rm
+
+================
+
+
+
+
+
+
+
+
+================
+
+installed packages
+
+================
+
+
+
+
+zlib1g:
+ Installed: 1:1.2.8.dfsg-2ubuntu4.3
+ Candidate: 1:1.2.8.dfsg-2ubuntu4.3
+ Version table:
+ *** 1:1.2.8.dfsg-2ubuntu4.3 100
+ 100 /var/lib/dpkg/status
+liblzma5:
+ Installed: 5.1.1alpha+20120614-2ubuntu2
+ Candidate: 5.1.1alpha+20120614-2ubuntu2
+ Version table:
+ *** 5.1.1alpha+20120614-2ubuntu2 100
+ 100 /var/lib/dpkg/status
+libncurses5:
+ Installed: 6.0+20160213-1ubuntu1
+ Candidate: 6.0+20160213-1ubuntu1
+ Version table:
+ *** 6.0+20160213-1ubuntu1 100
+ 100 /var/lib/dpkg/status
+libtbb2:
+ Installed: 4.4~20151115-0ubuntu3
+ Candidate: 4.4~20151115-0ubuntu3
+ Version table:
+ *** 4.4~20151115-0ubuntu3 100
+ 100 /var/lib/dpkg/status
+perl:
+ Installed: 5.22.1-9ubuntu0.9
+ Candidate: 5.22.1-9ubuntu0.9
+ Version table:
+ *** 5.22.1-9ubuntu0.9 100
+ 100 /var/lib/dpkg/status
+python:
+ Installed: 2.7.12-1~16.04
+ Candidate: 2.7.12-1~16.04
+ Version table:
+ *** 2.7.12-1~16.04 100
+ 100 /var/lib/dpkg/status
diff --git a/ubuntu/v16.04/samtools/v1.14/Dockerfile b/ubuntu/v16.04/samtools/v1.14/Dockerfile
new file mode 100644
index 0000000000000000000000000000000000000000..96dc08671d726137066530b0d0870b2635e6cf86
--- /dev/null
+++ b/ubuntu/v16.04/samtools/v1.14/Dockerfile
@@ -0,0 +1,92 @@
+#########################################################################
+## ##
+## Dockerfile ##
+## Samtools ##
+## ##
+## Gael A. Millot ##
+## Bioinformatics and Biostatistics Hub ##
+## Computational Biology Department ##
+## Institut Pasteur Paris ##
+## ##
+#########################################################################
+
+
+
+# to get the log of the building:
+# sudo docker run -ti --entrypoint bash <IMAGE_NAME>
+# cat building.log
+
+# to get all the ubuntu packages:
+# sudo docker run -ti --entrypoint bash <IMAGE_NAME>
+# apt-get update ; apt-cache policy zlib1g liblzma5 libncurses5
+
+# to export a file from the container:
+# sudo docker container ls -a # to get all the active containers
+# sudo docker cp <containerNAMES>:/building.log </host/path/target>
+
+# samtools
+# http://www.htslib.org/
+# https://github.com/samtools/samtools/tags
+# v1.14
+
+
+# base image: ubuntu:16.04
+FROM gmillot/bash-extended_v3.0:gitlab_v4.0
+# Warning: the name must be exactly what is written in the docker images interface, or sudo docker image ls
+
+LABEL Gael.Millot=gael.millot@pasteur.fr
+LABEL gitlab.dockerfiles="https://gitlab.pasteur.fr/gmillot/dockerfiles"
+
+
+RUN echo "\n\n\n\n================\n\napt-get update\n\n================\n\n\n\n" > /building.log \
+ && apt-get update --fix-missing \
+ | tee -a /building.log \
+ # samtools install
+ && echo "\n\n\n\n================\n\napt-get install\n\n================\n\n\n\n" >> /building.log \
+ && apt-get install -y \
+ wget \
+ gcc \
+ make \
+ libbz2-dev \
+ zlib1g \
+ zlib1g-dev \
+ liblzma5 \
+ liblzma-dev \
+ libncurses5 \
+ libncurses5-dev \
+ bzip2 \
+ | tee -a /building.log \
+ && echo "\n\n\n\n================\n\nsamtools installation\n\n================\n\n\n\n" >> /building.log \
+ && cd /usr/local/ \
+ && wget -O samtools.tar.bz2 https://github.com/samtools/samtools/releases/download/1.14/samtools-1.14.tar.bz2 \
+ && tar -xjvf samtools.tar.bz2 \
+ && rm -rf samtools.tar.bz2 \
+ && cd samtools-1.14 \
+ && ./configure \
+ && make \
+ && make install \
+ && cd /usr/local \
+ && rm -rf /usr/local/samtools-1.14 \
+ && apt-get remove -y \
+ wget \
+ gcc \
+ make \
+ libbz2-dev \
+ zlib1g-dev \
+ liblzma-dev \
+ libncurses5-dev \
+ bzip2 \
+ # end samtools install
+ # cleaning
+ && echo "\n\n\n\n================\n\napt-get autoremove\n\n================\n\n\n\n" >> /building.log \
+ && apt-get autoremove -y \
+ | tee -a /building.log ; echo "\n\n\n\n================\n\napt-get clean\n\n================\n\n\n\n" >> /building.log \
+ && apt-get clean \
+ | tee -a /building.log ; echo "\n\n\n\n================\n\nrm\n\n================\n\n\n\n" >> /building.log \
+ && rm -rf /var/lib/apt/lists/* \
+ | tee -a /building.log \
+ && echo "\n\n\n\n================\n\ninstalled packages\n\n================\n\n\n\n" >> /building.log \
+ && apt-cache policy zlib1g liblzma5 libncurses5 >> /building.log
+
+ENTRYPOINT ["/bin/bash"]
+# ENTRYPOINT ["/usr/local/bin/samtools"]
\ No newline at end of file
diff --git a/ubuntu/v16.04/samtools/v1.14/building.log b/ubuntu/v16.04/samtools/v1.14/building.log
new file mode 100644
index 0000000000000000000000000000000000000000..e5fcf5021aea77ba30e0dc42587c3b6df13cb985
--- /dev/null
+++ b/ubuntu/v16.04/samtools/v1.14/building.log
@@ -0,0 +1,361 @@
+
+
+
+
+================
+
+apt-get update
+
+================
+
+
+
+
+Get:1 http://security.ubuntu.com/ubuntu xenial-security InRelease [109 kB]
+Get:2 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB]
+Get:3 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [2051 kB]
+Get:4 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [109 kB]
+Get:5 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [107 kB]
+Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1558 kB]
+Get:7 http://archive.ubuntu.com/ubuntu xenial/restricted amd64 Packages [14.1 kB]
+Get:8 http://archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [9827 kB]
+Get:9 http://security.ubuntu.com/ubuntu xenial-security/restricted amd64 Packages [15.9 kB]
+Get:10 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [984 kB]
+Get:11 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [8820 B]
+Get:12 http://archive.ubuntu.com/ubuntu xenial/multiverse amd64 Packages [176 kB]
+Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [2560 kB]
+Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 Packages [16.4 kB]
+Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [1544 kB]
+Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [26.2 kB]
+Get:17 http://archive.ubuntu.com/ubuntu xenial-backports/main amd64 Packages [10.9 kB]
+Get:18 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [12.7 kB]
+Fetched 19.4 MB in 7s (2616 kB/s)
+Reading package lists...
+
+
+
+
+================
+
+apt-get install
+
+================
+
+
+
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+liblzma5 is already the newest version (5.1.1alpha+20120614-2ubuntu2).
+libncurses5 is already the newest version (6.0+20160213-1ubuntu1).
+zlib1g is already the newest version (1:1.2.8.dfsg-2ubuntu4.3).
+The following additional packages will be installed:
+ binutils bzip2-doc cpp cpp-5 gcc-5 libasan2 libatomic1 libc-dev-bin
+ libc6-dev libcc1-0 libcilkrts5 libgcc-5-dev libgomp1 libisl15 libitm1
+ liblsan0 libmpc3 libmpx0 libquadmath0 libtinfo-dev libtsan0 libubsan0
+ linux-libc-dev manpages manpages-dev
+Suggested packages:
+ binutils-doc cpp-doc gcc-5-locales gcc-multilib autoconf automake libtool
+ flex bison gdb gcc-doc gcc-5-multilib gcc-5-doc libgcc1-dbg libgomp1-dbg
+ libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg libtsan0-dbg
+ libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg glibc-doc
+ liblzma-doc ncurses-doc make-doc man-browser
+The following NEW packages will be installed:
+ binutils bzip2 bzip2-doc cpp cpp-5 gcc gcc-5 libasan2 libatomic1 libbz2-dev
+ libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libgcc-5-dev libgomp1 libisl15
+ libitm1 liblsan0 liblzma-dev libmpc3 libmpx0 libncurses5-dev libquadmath0
+ libtinfo-dev libtsan0 libubsan0 linux-libc-dev make manpages manpages-dev
+ wget zlib1g-dev
+0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded.
+Need to get 30.0 MB of archives.
+After this operation, 106 MB of additional disk space will be used.
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+Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 bzip2 amd64 1.0.6-8ubuntu0.2 [32.5 kB]
+Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages all 4.04-2 [1087 kB]
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+Get:6 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 bzip2-doc all 1.0.6-8ubuntu0.2 [294 kB]
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+Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.12 [7783 kB]
+Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB]
+Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.12 [38.8 kB]
+Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.12 [55.2 kB]
+Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.12 [27.4 kB]
+Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.12 [8892 B]
+Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.12 [265 kB]
+Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.12 [105 kB]
+Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.12 [244 kB]
+Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.12 [95.3 kB]
+Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.12 [40.0 kB]
+Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.12 [9762 B]
+Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.12 [131 kB]
+Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.12 [2239 kB]
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+Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-210.242 [832 kB]
+Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu11.3 [2083 kB]
+Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libbz2-dev amd64 1.0.6-8ubuntu0.2 [29.0 kB]
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+Get:29 http://archive.ubuntu.com/ubuntu xenial/main amd64 libncurses5-dev amd64 6.0+20160213-1ubuntu1 [175 kB]
+Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 make amd64 4.1-6 [151 kB]
+Get:31 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages-dev all 4.04-2 [2048 kB]
+Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4.3 [167 kB]
+Get:33 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblzma-dev amd64 5.1.1alpha+20120614-2ubuntu2 [137 kB]
+Fetched 30.0 MB in 11s (2581 kB/s)
+Selecting previously unselected package libmpc3:amd64.
+(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 8708 files and directories currently installed.)
+Preparing to unpack .../libmpc3_1.0.3-1_amd64.deb ...
+Unpacking libmpc3:amd64 (1.0.3-1) ...
+Selecting previously unselected package bzip2.
+Preparing to unpack .../bzip2_1.0.6-8ubuntu0.2_amd64.deb ...
+Unpacking bzip2 (1.0.6-8ubuntu0.2) ...
+Selecting previously unselected package manpages.
+Preparing to unpack .../manpages_4.04-2_all.deb ...
+Unpacking manpages (4.04-2) ...
+Selecting previously unselected package wget.
+Preparing to unpack .../wget_1.17.1-1ubuntu1.5_amd64.deb ...
+Unpacking wget (1.17.1-1ubuntu1.5) ...
+Selecting previously unselected package binutils.
+Preparing to unpack .../binutils_2.26.1-1ubuntu1~16.04.8_amd64.deb ...
+Unpacking binutils (2.26.1-1ubuntu1~16.04.8) ...
+Selecting previously unselected package bzip2-doc.
+Preparing to unpack .../bzip2-doc_1.0.6-8ubuntu0.2_all.deb ...
+Unpacking bzip2-doc (1.0.6-8ubuntu0.2) ...
+Selecting previously unselected package libisl15:amd64.
+Preparing to unpack .../libisl15_0.16.1-1_amd64.deb ...
+Unpacking libisl15:amd64 (0.16.1-1) ...
+Selecting previously unselected package cpp-5.
+Preparing to unpack .../cpp-5_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
+Unpacking cpp-5 (5.4.0-6ubuntu1~16.04.12) ...
+Selecting previously unselected package cpp.
+Preparing to unpack .../cpp_4%3a5.3.1-1ubuntu1_amd64.deb ...
+Unpacking cpp (4:5.3.1-1ubuntu1) ...
+Selecting previously unselected package libcc1-0:amd64.
+Preparing to unpack .../libcc1-0_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
+Unpacking libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Selecting previously unselected package libgomp1:amd64.
+Preparing to unpack .../libgomp1_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
+Unpacking libgomp1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Selecting previously unselected package libitm1:amd64.
+Preparing to unpack .../libitm1_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
+Unpacking libitm1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Selecting previously unselected package libatomic1:amd64.
+Preparing to unpack .../libatomic1_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
+Unpacking libatomic1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Selecting previously unselected package libasan2:amd64.
+Preparing to unpack .../libasan2_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
+Unpacking libasan2:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Selecting previously unselected package liblsan0:amd64.
+Preparing to unpack .../liblsan0_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
+Unpacking liblsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Selecting previously unselected package libtsan0:amd64.
+Preparing to unpack .../libtsan0_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
+Unpacking libtsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Selecting previously unselected package libubsan0:amd64.
+Preparing to unpack .../libubsan0_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
+Unpacking libubsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Selecting previously unselected package libcilkrts5:amd64.
+Preparing to unpack .../libcilkrts5_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
+Unpacking libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Selecting previously unselected package libmpx0:amd64.
+Preparing to unpack .../libmpx0_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
+Unpacking libmpx0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Selecting previously unselected package libquadmath0:amd64.
+Preparing to unpack .../libquadmath0_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
+Unpacking libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Selecting previously unselected package libgcc-5-dev:amd64.
+Preparing to unpack .../libgcc-5-dev_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
+Unpacking libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Selecting previously unselected package gcc-5.
+Preparing to unpack .../gcc-5_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
+Unpacking gcc-5 (5.4.0-6ubuntu1~16.04.12) ...
+Selecting previously unselected package gcc.
+Preparing to unpack .../gcc_4%3a5.3.1-1ubuntu1_amd64.deb ...
+Unpacking gcc (4:5.3.1-1ubuntu1) ...
+Selecting previously unselected package libc-dev-bin.
+Preparing to unpack .../libc-dev-bin_2.23-0ubuntu11.3_amd64.deb ...
+Unpacking libc-dev-bin (2.23-0ubuntu11.3) ...
+Selecting previously unselected package linux-libc-dev:amd64.
+Preparing to unpack .../linux-libc-dev_4.4.0-210.242_amd64.deb ...
+Unpacking linux-libc-dev:amd64 (4.4.0-210.242) ...
+Selecting previously unselected package libc6-dev:amd64.
+Preparing to unpack .../libc6-dev_2.23-0ubuntu11.3_amd64.deb ...
+Unpacking libc6-dev:amd64 (2.23-0ubuntu11.3) ...
+Selecting previously unselected package libbz2-dev:amd64.
+Preparing to unpack .../libbz2-dev_1.0.6-8ubuntu0.2_amd64.deb ...
+Unpacking libbz2-dev:amd64 (1.0.6-8ubuntu0.2) ...
+Selecting previously unselected package libtinfo-dev:amd64.
+Preparing to unpack .../libtinfo-dev_6.0+20160213-1ubuntu1_amd64.deb ...
+Unpacking libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ...
+Selecting previously unselected package libncurses5-dev:amd64.
+Preparing to unpack .../libncurses5-dev_6.0+20160213-1ubuntu1_amd64.deb ...
+Unpacking libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ...
+Selecting previously unselected package make.
+Preparing to unpack .../archives/make_4.1-6_amd64.deb ...
+Unpacking make (4.1-6) ...
+Selecting previously unselected package manpages-dev.
+Preparing to unpack .../manpages-dev_4.04-2_all.deb ...
+Unpacking manpages-dev (4.04-2) ...
+Selecting previously unselected package zlib1g-dev:amd64.
+Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4.3_amd64.deb ...
+Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.3) ...
+Selecting previously unselected package liblzma-dev:amd64.
+Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ...
+Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ...
+Processing triggers for libc-bin (2.23-0ubuntu11.3) ...
+Setting up libmpc3:amd64 (1.0.3-1) ...
+Setting up bzip2 (1.0.6-8ubuntu0.2) ...
+Setting up manpages (4.04-2) ...
+Setting up wget (1.17.1-1ubuntu1.5) ...
+Setting up binutils (2.26.1-1ubuntu1~16.04.8) ...
+Setting up bzip2-doc (1.0.6-8ubuntu0.2) ...
+Setting up libisl15:amd64 (0.16.1-1) ...
+Setting up cpp-5 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up cpp (4:5.3.1-1ubuntu1) ...
+Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up gcc-5 (5.4.0-6ubuntu1~16.04.12) ...
+Setting up gcc (4:5.3.1-1ubuntu1) ...
+Setting up libc-dev-bin (2.23-0ubuntu11.3) ...
+Setting up linux-libc-dev:amd64 (4.4.0-210.242) ...
+Setting up libc6-dev:amd64 (2.23-0ubuntu11.3) ...
+Setting up libbz2-dev:amd64 (1.0.6-8ubuntu0.2) ...
+Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ...
+Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ...
+Setting up make (4.1-6) ...
+Setting up manpages-dev (4.04-2) ...
+Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.3) ...
+Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ...
+Processing triggers for libc-bin (2.23-0ubuntu11.3) ...
+
+
+
+
+================
+
+samtools installation
+
+================
+
+
+
+
+
+
+
+
+================
+
+apt-get autoremove
+
+================
+
+
+
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages will be REMOVED:
+ binutils bzip2-doc cpp cpp-5 gcc-5 libasan2 libatomic1 libc-dev-bin
+ libc6-dev libcc1-0 libcilkrts5 libgcc-5-dev libgomp1 libisl15 libitm1
+ liblsan0 libmpc3 libmpx0 libquadmath0 libtinfo-dev libtsan0 libubsan0
+ linux-libc-dev manpages manpages-dev
+0 upgraded, 0 newly installed, 25 to remove and 0 not upgraded.
+After this operation, 102 MB disk space will be freed.
+(Reading database ...
(Reading database ... 5%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12829 files and directories currently installed.)
+Removing gcc-5 (5.4.0-6ubuntu1~16.04.12) ...
+Removing binutils (2.26.1-1ubuntu1~16.04.8) ...
+Removing bzip2-doc (1.0.6-8ubuntu0.2) ...
+Removing cpp (4:5.3.1-1ubuntu1) ...
+Removing cpp-5 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libasan2:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libatomic1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libc6-dev:amd64 (2.23-0ubuntu11.3) ...
+Removing libc-dev-bin (2.23-0ubuntu11.3) ...
+Removing libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libgomp1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libisl15:amd64 (0.16.1-1) ...
+Removing libitm1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing liblsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libmpc3:amd64 (1.0.3-1) ...
+Removing libmpx0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ...
+Removing libtsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing libubsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
+Removing linux-libc-dev:amd64 (4.4.0-210.242) ...
+Removing manpages-dev (4.04-2) ...
+Removing manpages (4.04-2) ...
+Processing triggers for libc-bin (2.23-0ubuntu11.3) ...
+
+
+
+
+================
+
+apt-get clean
+
+================
+
+
+
+
+
+
+
+
+================
+
+rm
+
+================
+
+
+
+
+
+
+
+
+================
+
+installed packages
+
+================
+
+
+
+
+zlib1g:
+ Installed: 1:1.2.8.dfsg-2ubuntu4.3
+ Candidate: 1:1.2.8.dfsg-2ubuntu4.3
+ Version table:
+ *** 1:1.2.8.dfsg-2ubuntu4.3 100
+ 100 /var/lib/dpkg/status
+liblzma5:
+ Installed: 5.1.1alpha+20120614-2ubuntu2
+ Candidate: 5.1.1alpha+20120614-2ubuntu2
+ Version table:
+ *** 5.1.1alpha+20120614-2ubuntu2 100
+ 100 /var/lib/dpkg/status
+libncurses5:
+ Installed: 6.0+20160213-1ubuntu1
+ Candidate: 6.0+20160213-1ubuntu1
+ Version table:
+ *** 6.0+20160213-1ubuntu1 100
+ 100 /var/lib/dpkg/status