diff --git a/README.md b/README.md index c12d6b26e71e513d68672cfdd73f01b8ab9c1d36..b965314a000d9a07b6cd868b9f688f6cf3a32c36 100644 --- a/README.md +++ b/README.md @@ -75,7 +75,7 @@ Use the gitlab tag of the docker image (e.g., gitlab_v5.0) to get the descriptio ### 10.8 Dockerfiles added: <br /> -ubuntu/v20.04/alohomora_merlin/v2.3 at date 20231212: from ubuntu/v20.04/alohomora_merlin/v2.2:gitlab_v10.7, with alohomora_bch_haplo_20231212 and allegro_20231212.pl script files added +ubuntu/v20.04/alohomora_merlin_allegro/v1.0 at date 20231212: from ubuntu/v20.04/alohomora_merlin/v2.1:gitlab_v9.5, with allegro soft and alohomora_bch_haplo_20231212 and allegro_20231212.pl script files added Warning: see section 8.5 below diff --git a/python/v3.6.12/nanoForkSpeed_basecalling/v1.0/Dockerfile b/python/v3.6.12/nanoForkSpeed_basecalling/v1.0/Dockerfile index 61ed104c0b12ef4a7e3b8d2f8fc0cd819c86b79e..df5af64675c8c6e63a2a5c6d74ffac7e68ae13f7 100644 --- a/python/v3.6.12/nanoForkSpeed_basecalling/v1.0/Dockerfile +++ b/python/v3.6.12/nanoForkSpeed_basecalling/v1.0/Dockerfile @@ -1,7 +1,7 @@ ######################################################################### ## ## ## Dockerfile ## -## Slivar ## +## nanoForkSpeed_basecalling ## ## ## ## Gael A. Millot ## ## Bioinformatics and Biostatistics Hub ## diff --git a/ubuntu/v20.04/alohomora_merlin_allegro/v1.0/allegro_20231212.pl b/ubuntu/v20.04/alohomora_merlin_allegro/v1.0/allegro_20231212.pl index 161b3dfa9462db93aa1340582644a990d5798697..3437dec8a51b76d23098c1c62514be144c81f9a7 100644 --- a/ubuntu/v20.04/alohomora_merlin_allegro/v1.0/allegro_20231212.pl +++ b/ubuntu/v20.04/alohomora_merlin_allegro/v1.0/allegro_20231212.pl @@ -34,6 +34,8 @@ if ( -d "c$chr") { if (-f "allegro.log") {unlink "allegro.log";} if (-f "param_mpt.$chr") {unlink "param_mpt.$chr";} open (OUT,">allegro.in") || die "could not open allegro.in :$!\n"; + print OUT "MAXMEMORY 64000\n"; # memory max in GB ??? + print OUT "HAPLOTYPE\n"; print OUT "PREFILE pedin.$chr\n"; print OUT "DATFILE datain.$chr\n"; close (OUT);