From 8b51c743edcaafdc2348edc64d0fa345dbd880a3 Mon Sep 17 00:00:00 2001
From: gmillot <gael.millot@pasteur.fr>
Date: Tue, 26 Mar 2024 16:15:49 +0100
Subject: [PATCH] correction in nanoForkSpeed_basecalling dockerfile title
---
README.md | 2 +-
python/v3.6.12/nanoForkSpeed_basecalling/v1.0/Dockerfile | 2 +-
ubuntu/v20.04/alohomora_merlin_allegro/v1.0/allegro_20231212.pl | 2 ++
3 files changed, 4 insertions(+), 2 deletions(-)
diff --git a/README.md b/README.md
index c12d6b2..b965314 100644
--- a/README.md
+++ b/README.md
@@ -75,7 +75,7 @@ Use the gitlab tag of the docker image (e.g., gitlab_v5.0) to get the descriptio
### 10.8
Dockerfiles added: <br />
-ubuntu/v20.04/alohomora_merlin/v2.3 at date 20231212: from ubuntu/v20.04/alohomora_merlin/v2.2:gitlab_v10.7, with alohomora_bch_haplo_20231212 and allegro_20231212.pl script files added
+ubuntu/v20.04/alohomora_merlin_allegro/v1.0 at date 20231212: from ubuntu/v20.04/alohomora_merlin/v2.1:gitlab_v9.5, with allegro soft and alohomora_bch_haplo_20231212 and allegro_20231212.pl script files added
Warning: see section 8.5 below
diff --git a/python/v3.6.12/nanoForkSpeed_basecalling/v1.0/Dockerfile b/python/v3.6.12/nanoForkSpeed_basecalling/v1.0/Dockerfile
index 61ed104..df5af64 100644
--- a/python/v3.6.12/nanoForkSpeed_basecalling/v1.0/Dockerfile
+++ b/python/v3.6.12/nanoForkSpeed_basecalling/v1.0/Dockerfile
@@ -1,7 +1,7 @@
#########################################################################
## ##
## Dockerfile ##
-## Slivar ##
+## nanoForkSpeed_basecalling ##
## ##
## Gael A. Millot ##
## Bioinformatics and Biostatistics Hub ##
diff --git a/ubuntu/v20.04/alohomora_merlin_allegro/v1.0/allegro_20231212.pl b/ubuntu/v20.04/alohomora_merlin_allegro/v1.0/allegro_20231212.pl
index 161b3df..3437dec 100644
--- a/ubuntu/v20.04/alohomora_merlin_allegro/v1.0/allegro_20231212.pl
+++ b/ubuntu/v20.04/alohomora_merlin_allegro/v1.0/allegro_20231212.pl
@@ -34,6 +34,8 @@ if ( -d "c$chr") {
if (-f "allegro.log") {unlink "allegro.log";}
if (-f "param_mpt.$chr") {unlink "param_mpt.$chr";}
open (OUT,">allegro.in") || die "could not open allegro.in :$!\n";
+ print OUT "MAXMEMORY 64000\n"; # memory max in GB ???
+ print OUT "HAPLOTYPE\n";
print OUT "PREFILE pedin.$chr\n";
print OUT "DATFILE datain.$chr\n";
close (OUT);
--
GitLab