diff --git a/R/v4.0.5/base/Dockerfile b/R/v4.0.5/base/Dockerfile index 5865d0ba8ca71ca96c77c4f9ca517c126104a7f2..6bb4353cd350089a89ba04459c41c9fdc149313e 100644 --- a/R/v4.0.5/base/Dockerfile +++ b/R/v4.0.5/base/Dockerfile @@ -1,3 +1,16 @@ +######################################################################### +## ## +## Dockerfile ## +## R base ## +## ## +## Gael A. Millot ## +## Bioinformatics and Biostatistics Hub ## +## Computational Biology Department ## +## Institut Pasteur Paris ## +## ## +######################################################################### + + # R # https://cran.r-project.org/ # v4.0.5 diff --git a/R/v4.0.5/extended/v1.0/Dockerfile b/R/v4.0.5/extended/v1.0/Dockerfile index 94ad33d610b33909706a3ef03a02ced7ca0a8ed3..3577a3e0e06f8516b94ea87cc527f467c2daa860 100644 --- a/R/v4.0.5/extended/v1.0/Dockerfile +++ b/R/v4.0.5/extended/v1.0/Dockerfile @@ -1,3 +1,16 @@ +######################################################################### +## ## +## Dockerfile ## +## R extended ## +## ## +## Gael A. Millot ## +## Bioinformatics and Biostatistics Hub ## +## Computational Biology Department ## +## Institut Pasteur Paris ## +## ## +######################################################################### + + # to get the log of the building: # sudo docker run -ti --entrypoint bash <IMAGE_NAME> @@ -5,261 +18,291 @@ # to get all the ubuntu packages: # sudo docker run -ti --entrypoint bash <IMAGE_NAME> -# apt-get update ; apt-cache policy procps libfontconfig1-dev build-essential libcurl4-gnutls-dev libxml2-dev libssl-dev libgit2-dev +# apt-get update ; apt-cache policy procps libfontconfig1-dev gettext build-essential libcurl4-gnutls-dev libxml2-dev libssl-dev libgit2-dev libcairo2-dev libxt-dev -# to get the table of the R packages installed +# to get the table of the R packages installed: # sudo docker run -ti --entrypoint bash <IMAGE_NAME> -# cat installed_r_packages.tsv +# cat installed_r_packages.txt -# to export a file from the container +# to export a file from the container: # sudo docker container ls -a # to get all the active containers # sudo docker cp <containerNAMES>:/building.log </host/path/target> +# Installed_Package Version +# abind 1.4-5 +# annotate 1.68.0 +# AnnotationDbi 1.52.0 +# askpass 1.1 +# assertthat 0.2.1 +# backports 1.4.1 +# base64enc 0.1-3 +# BH 1.78.0-0 +# Biobase 2.50.0 +# BiocGenerics 0.36.1 +# BiocManager 1.30.16 +# BiocParallel 1.24.1 +# BiocVersion 3.12.0 +# Biostrings 2.58.0 +# bit 4.0.4 +# bit64 4.0.5 +# bitops 1.0-7 +# blob 1.2.2 +# brew 1.0-6 +# brio 1.1.3 +# broom 0.7.10 +# cachem 1.0.6 +# Cairo 1.5-14 +# callr 3.7.0 +# car 3.0-12 +# carData 3.0-4 +# caret 6.0-90 +# caTools 1.18.2 +# cellranger 1.1.0 +# CGHbase 1.50.0 +# CGHcall 2.52.0 +# cli 3.1.0 +# clipr 0.7.1 +# colorspace 2.0-2 +# commonmark 1.7 +# conquer 1.2.1 +# corrplot 0.92 +# covr 3.5.1 +# cpp11 0.4.2 +# crayon 1.4.2 +# credentials 1.3.2 +# crosstalk 1.2.0 +# curl 4.3.2 +# data.table 1.14.2 +# DBI 1.1.2 +# dbplyr 2.1.1 +# DelayedArray 0.16.3 +# desc 1.4.0 +# DESeq2 1.30.1 +# devtools 2.4.3 +# diffobj 0.3.5 +# digest 0.6.29 +# DNAcopy 1.64.0 +# docopt 0.7.1 +# dplyr 1.0.7 +# DT 0.2 +# dtplyr 1.2.0 +# e1071 1.7-9 +# edgeR 3.32.1 +# ellipsis 0.3.2 +# emmeans 1.7.1-1 +# estimability 1.3 +# evaluate 0.14 +# ExPosition 2.8.23 +# fansi 0.5.0 +# farver 2.1.0 +# fastmap 1.1.0 +# forcats 0.5.1 +# foreach 1.5.1 +# formatR 1.11 +# fs 1.5.2 +# futile.logger 1.4.3 +# futile.options 1.0.1 +# future 1.23.0 +# future.apply 1.8.1 +# gargle 1.2.0 +# genefilter 1.72.1 +# geneplotter 1.68.0 +# generics 0.1.1 +# GenomeInfoDb 1.26.7 +# GenomeInfoDbData 1.2.4 +# GenomicRanges 1.42.0 +# gert 1.4.3 +# GGally 2.1.2 +# ggdendro 0.1.22 +# ggplot2 3.3.3 +# ggrepel 0.9.1 +# ggseqlogo 0.1 +# gh 1.3.0 +# gitcreds 0.1.1 +# githubinstall 0.2.2 +# globals 0.14.0 +# glue 1.6.0 +# googledrive 2.0.0 +# googlesheets4 1.0.0 +# gower 0.2.2 +# gplots 3.1.1 +# gridExtra 2.3 +# gtable 0.3.0 +# gtools 3.9.2 +# haven 2.4.3 +# here 1.0.1 +# HiCcompare 1.12.0 +# highr 0.9 +# hms 1.1.1 +# htmltools 0.5.2 +# htmlwidgets 1.5.4 +# httr 1.4.2 +# ids 1.0.1 +# impute 1.64.0 +# ini 0.3.1 +# InteractionSet 1.18.1 +# ipred 0.9-12 +# IRanges 2.24.1 +# isoband 0.2.5 +# iterators 1.0.13 +# jpeg 0.1-9 +# jquerylib 0.1.4 +# jsonlite 1.7.2 +# kableExtra 1.3.4 +# knitr 1.37 +# labeling 0.4.2 +# lambda.r 1.2.4 +# later 1.3.0 +# lava 1.6.10 +# lazyeval 0.2.2 +# lemon 0.4.5 +# lifecycle 1.0.1 +# limma 3.46.0 +# listenv 0.8.0 +# lme4 1.1-27.1 +# lmerTest 3.1-3 +# locfit 1.5-9.4 +# lubridate 1.8.0 +# magrittr 2.0.1 +# maptools 1.1-2 +# markdown 1.1 +# marray 1.68.0 +# MatrixGenerics 1.2.1 +# MatrixModels 0.5-0 +# matrixStats 0.61.0 +# memoise 2.0.1 +# mime 0.12 +# minqa 1.2.4 +# mockery 0.4.2 +# ModelMetrics 1.2.2.2 +# modelr 0.1.8 +# munsell 0.5.0 +# mvtnorm 1.1-3 +# nloptr 1.2.2.3 +# numDeriv 2016.8-1.1 +# openssl 1.4.6 +# openxlsx 4.2.5 +# parallelly 1.30.0 +# pbkrtest 0.5.1 +# pheatmap 1.0.12 +# pillar 1.6.4 +# pkgbuild 1.3.1 +# pkgconfig 2.0.3 +# pkgload 1.2.4 +# plogr 0.2.0 +# plyr 1.8.6 +# png 0.1-7 +# praise 1.0.0 +# prettyGraphs 2.1.6 +# prettyunits 1.1.1 +# pROC 1.18.0 +# processx 3.5.2 +# prodlim 2019.11.13 +# progress 1.2.2 +# progressr 0.10.0 +# promises 1.2.0.1 +# proxy 0.4-26 +# ps 1.6.0 +# pspearman 0.3-0 +# purrr 0.3.4 +# QDNAseq 1.26.0 +# quantreg 5.86 +# R.methodsS3 1.8.1 +# R.oo 1.24.0 +# R.utils 2.11.0 +# R6 2.5.1 +# rappdirs 0.3.3 +# rcmdcheck 1.4.0 +# RColorBrewer 1.1-2 +# Rcpp 1.0.7 +# RcppArmadillo 0.10.7.5.0 +# RcppEigen 0.3.3.9.1 +# RCurl 1.98-1.5 +# readr 2.1.1 +# readxl 1.3.1 +# recipes 0.1.17 +# rematch 1.0.1 +# rematch2 2.1.2 +# remotes 2.4.2 +# reprex 2.0.1 +# reshape 0.8.8 +# reshape2 1.4.4 +# reticulate 1.22 +# rex 1.2.1 +# rhdf5 2.34.0 +# rhdf5filters 1.2.1 +# Rhdf5lib 1.12.1 +# Rhtslib 1.22.0 +# rio 0.5.29 +# rlang 0.4.12 +# rmarkdown 2.11 +# roxygen2 7.1.2 +# rprojroot 2.0.2 +# Rsamtools 2.6.0 +# RSQLite 2.2.9 +# rstudioapi 0.13 +# rversions 2.1.1 +# rvest 1.0.2 +# S4Vectors 0.28.1 +# scales 1.1.1 +# selectr 0.4-2 +# sessioninfo 1.2.2 +# snow 0.4-4 +# snowfall 1.84-6.1 +# sp 1.4-6 +# SparseM 1.81 +# SQUAREM 2021.1 +# statmod 1.4.36 +# stringi 1.7.6 +# stringr 1.4.0 +# SummarizedExperiment 1.20.0 +# SuppDists 1.1-9.5 +# svglite 2.0.0 +# sys 3.4 +# systemfonts 1.0.3 +# testthat 3.1.1 +# tibble 3.1.6 +# tidyr 1.1.4 +# tidyselect 1.1.1 +# tidyverse 1.3.1 +# timeDate 3043.102 +# tinytex 0.36 +# tzdb 0.2.0 +# usethis 2.1.5 +# utf8 1.2.2 +# uuid 1.0-3 +# vctrs 0.3.8 +# viridisLite 0.4.0 +# vroom 1.5.7 +# waldo 0.3.1 +# webshot 0.5.2 +# whisker 0.4 +# withr 2.4.3 +# xfun 0.29 +# XML 3.99-0.8 +# xml2 1.3.3 +# xopen 1.0.0 +# xtable 1.8-4 +# XVector 0.30.0 +# yaml 2.2.1 +# zip 2.2.0 +# zlibbioc 1.36.0 +# littler 0.3.12 -# The ubuntu packages installed are: -# procps=2:3.3.17-5 -# libfontconfig1-dev=2.13.1-4.2 -# build-essential=12.9 -# libcurl4-gnutls-dev=7.79.1-2 -# libxml2-dev=2.9.12+dfsg-5+b1 -# libssl-dev=1.1.1l-1 -# libgit2-dev=1.1.0+dfsg.1-4.1 - -# The R v4.0.5 packages installed are: -# Package Version -# abind abind 1.4-5 -# askpass askpass 1.1 -# assertthat assertthat 0.2.1 -# backports backports 1.4.0 -# base64enc base64enc 0.1-3 -# BH BH 1.75.0-0 -# BiocManager BiocManager 1.30.16 -# bit bit 4.0.4 -# bit64 bit64 4.0.5 -# bitops bitops 1.0-7 -# blob blob 1.2.2 -# brew brew 1.0-6 -# brio brio 1.1.3 -# broom broom 0.7.10 -# cachem cachem 1.0.6 -# callr callr 3.7.0 -# car car 3.0-12 -# carData carData 3.0-4 -# caret caret 6.0-90 -# caTools caTools 1.18.2 -# cellranger cellranger 1.1.0 -# cli cli 3.1.0 -# clipr clipr 0.7.1 -# colorspace colorspace 2.0-2 -# commonmark commonmark 1.7 -# conquer conquer 1.2.1 -# corrplot corrplot 0.92 -# covr covr 3.5.1 -# cpp11 cpp11 0.4.2 -# crayon crayon 1.4.2 -# credentials credentials 1.3.2 -# crosstalk crosstalk 1.2.0 -# curl curl 4.3.2 -# data.table data.table 1.14.2 -# DBI DBI 1.1.1 -# dbplyr dbplyr 2.1.1 -# desc desc 1.4.0 -# devtools devtools 2.4.3 -# diffobj diffobj 0.3.5 -# digest digest 0.6.29 -# docopt docopt 0.7.1 -# dplyr dplyr 1.0.7 -# DT DT 0.20 -# dtplyr dtplyr 1.2.0 -# e1071 e1071 1.7-9 -# ellipsis ellipsis 0.3.2 -# emmeans emmeans 1.7.1-1 -# estimability estimability 1.3 -# evaluate evaluate 0.14 -# ExPosition ExPosition 2.8.23 -# fansi fansi 0.5.0 -# farver farver 2.1.0 -# fastmap fastmap 1.1.0 -# forcats forcats 0.5.1 -# foreach foreach 1.5.1 -# formatR formatR 1.11 -# fs fs 1.5.2 -# futile.logger futile.logger 1.4.3 -# futile.options futile.options 1.0.1 -# future future 1.23.0 -# future.apply future.apply 1.8.1 -# gargle gargle 1.2.0 -# generics generics 0.1.1 -# gert gert 1.4.3 -# GGally GGally 2.1.2 -# ggdendro ggdendro 0.1.22 -# ggplot2 ggplot2 3.3.3 -# ggrepel ggrepel 0.9.1 -# ggseqlogo ggseqlogo 0.1 -# gh gh 1.3.0 -# gitcreds gitcreds 0.1.1 -# githubinstall githubinstall 0.2.2 -# globals globals 0.14.0 -# glue glue 1.5.1 -# googledrive googledrive 2.0.0 -# googlesheets4 googlesheets4 1.0.0 -# gower gower 0.2.2 -# gplots gplots 3.1.1 -# gridExtra gridExtra 2.3 -# gtable gtable 0.3.0 -# gtools gtools 3.9.2 -# haven haven 2.4.3 -# here here 1.0.1 -# highr highr 0.9 -# hms hms 1.1.1 -# htmltools htmltools 0.5.2 -# htmlwidgets htmlwidgets 1.5.4 -# httr httr 1.4.2 -# ids ids 1.0.1 -# ini ini 0.3.1 -# ipred ipred 0.9-12 -# isoband isoband 0.2.5 -# iterators iterators 1.0.13 -# jpeg jpeg 0.1-9 -# jquerylib jquerylib 0.1.4 -# jsonlite jsonlite 1.7.2 -# knitr knitr 1.36 -# labeling labeling 0.4.2 -# lambda.r lambda.r 1.2.4 -# later later 1.3.0 -# lava lava 1.6.10 -# lazyeval lazyeval 0.2.2 -# lemon lemon 0.4.5 -# lifecycle lifecycle 1.0.1 -# listenv listenv 0.8.0 -# lme4 lme4 1.1-27.1 -# lmerTest lmerTest 3.1-3 -# locfit locfit 1.5-9.4 -# lubridate lubridate 1.8.0 -# magrittr magrittr 2.0.1 -# maptools maptools 1.1-2 -# markdown markdown 1.1 -# MatrixModels MatrixModels 0.5-0 -# matrixStats matrixStats 0.61.0 -# memoise memoise 2.0.1 -# mime mime 0.12 -# minqa minqa 1.2.4 -# mockery mockery 0.4.2 -# ModelMetrics ModelMetrics 1.2.2.2 -# modelr modelr 0.1.8 -# munsell munsell 0.5.0 -# mvtnorm mvtnorm 1.1-3 -# nloptr nloptr 1.2.2.3 -# numDeriv numDeriv 2016.8-1.1 -# openssl openssl 1.4.5 -# openxlsx openxlsx 4.2.4 -# parallelly parallelly 1.29.0 -# pbkrtest pbkrtest 0.5.1 -# pheatmap pheatmap 1.0.12 -# pillar pillar 1.6.4 -# pkgbuild pkgbuild 1.3.0 -# pkgconfig pkgconfig 2.0.3 -# pkgload pkgload 1.2.4 -# plogr plogr 0.2.0 -# plyr plyr 1.8.6 -# png png 0.1-7 -# praise praise 1.0.0 -# prettyGraphs prettyGraphs 2.1.6 -# prettyunits prettyunits 1.1.1 -# pROC pROC 1.18.0 -# processx processx 3.5.2 -# prodlim prodlim 2019.11.13 -# progress progress 1.2.2 -# progressr progressr 0.9.0 -# promises promises 1.2.0.1 -# proxy proxy 0.4-26 -# ps ps 1.6.0 -# pspearman pspearman 0.3-0 -# purrr purrr 0.3.4 -# quantreg quantreg 5.86 -# R.methodsS3 R.methodsS3 1.8.1 -# R.oo R.oo 1.24.0 -# R.utils R.utils 2.11.0 -# R6 R6 2.5.1 -# rappdirs rappdirs 0.3.3 -# rcmdcheck rcmdcheck 1.4.0 -# RColorBrewer RColorBrewer 1.1-2 -# Rcpp Rcpp 1.0.7 -# RcppArmadillo RcppArmadillo 0.10.7.3.0 -# RcppEigen RcppEigen 0.3.3.9.1 -# RCurl RCurl 1.98-1.5 -# readr readr 2.1.1 -# readxl readxl 1.3.1 -# recipes recipes 0.1.17 -# rematch rematch 1.0.1 -# rematch2 rematch2 2.1.2 -# remotes remotes 2.4.2 -# reprex reprex 2.0.1 -# reshape reshape 0.8.8 -# reshape2 reshape2 1.4.4 -# reticulate reticulate 1.22 -# rex rex 1.2.1 -# rio rio 0.5.29 -# rlang rlang 0.4.12 -# rmarkdown rmarkdown 2.11 -# roxygen2 roxygen2 7.1.2 -# rprojroot rprojroot 2.0.2 -# RSQLite RSQLite 2.2.9 -# rstudioapi rstudioapi 0.13 -# rversions rversions 2.1.1 -# rvest rvest 1.0.2 -# scales scales 1.1.1 -# selectr selectr 0.4-2 -# sessioninfo sessioninfo 1.2.2 -# snow snow 0.4-4 -# snowfall snowfall 1.84-6.1 -# sp sp 1.4-6 -# SparseM SparseM 1.81 -# SQUAREM SQUAREM 2021.1 -# statmod statmod 1.4.36 -# stringi stringi 1.7.6 -# stringr stringr 1.4.0 -# SuppDists SuppDists 1.1-9.5 -# sys sys 3.4 -# testthat testthat 3.1.1 -# tibble tibble 3.1.6 -# tidyr tidyr 1.1.4 -# tidyselect tidyselect 1.1.1 -# tidyverse tidyverse 1.3.1 -# timeDate timeDate 3043.102 -# tinytex tinytex 0.35 -# tzdb tzdb 0.2.0 -# usethis usethis 2.1.5 -# utf8 utf8 1.2.2 -# uuid uuid 1.0-3 -# vctrs vctrs 0.3.8 -# viridisLite viridisLite 0.4.0 -# vroom vroom 1.5.7 -# waldo waldo 0.3.1 -# webshot webshot 0.5.2 -# whisker whisker 0.4 -# withr withr 2.4.3 -# xfun xfun 0.28 -# XML XML 3.99-0.8 -# xml2 xml2 1.3.3 -# xopen xopen 1.0.0 -# xtable xtable 1.8-4 -# yaml yaml 2.2.1 -# zip zip 2.2.0 -# littler littler 0.3.12 - # base image: r-base:4.0.5 FROM gmillot/r-base_v4.0.5:gitlab_v1.0 -# Warning: the name must be exactly what is written in the docker images interface, or sudo docker image ls. Here, the image is present locally, or distantly on the gmillot repo. Thus, gmillot/r-base:4.0.5 is correct +# Warning: the name must be exactly what is written in the docker images interface, or sudo docker image ls. Here, the image is present locally, or distantly on the gmillot repo. Thus, gmillot/r-base:4.0.5 is correct. LABEL Gael.Millot=gael.millot@pasteur.fr LABEL gitlab.dockerfiles="https://gitlab.pasteur.fr/gmillot/dockerfiles" ENV CRANREPO="'https://cran.irsn.fr/'" -# use the code above to get the list of the installed packages -# Warning : add BiocManager and devtool at first positions and ggplot2 at last. +# use the code above to chack the list of the installed packages. +# Warning : add BiocManager and devtool at first positions and ggplot2 at last in the list below. +# SARTools package removed here because require a version of edgeR that I cannot find (R v4.0.5 not adapted for SARTool last version). +# translations package removed here because I could not find a way to install it without error, even with gettext ubuntu package. ENV RLIB="\ 'BiocManager' \ 'devtools' \ @@ -459,7 +502,6 @@ ENV RLIB="\ 'rversions' \ 'rvest' \ 'S4Vectors' \ - 'SARTools' \ 'scales' \ 'selectr' \ 'sessioninfo' \ @@ -481,7 +523,6 @@ ENV RLIB="\ 'tidyselect' \ 'tidyverse' \ 'tinytex' \ - 'translations' \ 'usethis' \ 'utf8' \ 'uuid' \ @@ -504,11 +545,13 @@ ENV RLIB="\ " # Warning : add BiocManager and devtool at first positions and ggplot2 at last. -# nextflow needs procps for usage stats, cpu and process memory. Normally, this package is present by default in ubuntu. But in the R base image, it seems that there is a problem -# libfontconfig1-dev is for blob -# libcurl4-gnutls-dev libxml2-dev libssl-dev libgit2-dev required for devtool package installation -# fun.warning.capture from fun_get_message() of the cute package -#I used a first loop because I cannot use array in dockerfiles + +# nextflow needs procps for usage stats, cpu and process memory. Normally, this package is present by default in ubuntu. But in the R base image, it seems that there is a problem. +# libfontconfig1-dev is for blob. +# libcurl4-gnutls-dev libxml2-dev libssl-dev libgit2-dev required for devtool package installation. +# libcairo2-dev and libxt-dev required for Cairo package installation. +# fun.warning.capture from fun_get_message() of the cute package. +# I used a first loop because I cannot use array in dockerfiles. RUN echo "\n\n\n\n================\n\napt-get update\n\n================\n\n\n\n" > building.log \ && apt-get update \ | tee -a building.log ; echo "\n\n\n\n================\n\napt-get install\n\n================\n\n\n\n" >> building.log \ @@ -522,6 +565,8 @@ RUN echo "\n\n\n\n================\n\napt-get update\n\n================\n\n\n\n libxml2-dev=2.9.12+dfsg-5+b1 \ libssl-dev=1.1.1m-1 \ libgit2-dev=1.1.0+dfsg.1-4.1 \ + libcairo2-dev=1.16.0-5 \ + libxt-dev=1:1.2.0-1 \ | tee -a building.log \ && RLIB_LENGTH=0 \ && for i2 in $RLIB ; do RLIB_LENGTH=$((RLIB_LENGTH+1)) ; done \ @@ -545,15 +590,17 @@ RUN echo "\n\n\n\n================\n\napt-get update\n\n================\n\n\n\n return(if(is.null(output\$warning)){NULL}else{as.character(output\$warning)}) \ } ; \ message(paste0('\n\n\n\n================\n\nR PACKAGE INSTALLATION ', $COUNT, ' / ', $RLIB_LENGTH, ': ', $i2, '\n\n================\n\n\n\n')) ; \ - if($i2 != 'ggplot2'){ \ + if( ! ($i2 %in% c('ggplot2', 'SARTools'))){ \ tempo.warn <- fun.warning.capture(exp = install.packages(pkgs = $i2)) ; \ if(is.null(tempo.warn)){ \ install.packages(pkgs = $i2, lib = '/usr/local/lib/R/site-library', dependencies = NA, verbose = TRUE, repo = $CRANREPO) \ }else{ \ BiocManager::install(pkgs = $i2, lib = '/usr/local/lib/R/site-library', dependencies = NA, verbose = TRUE, update = FALSE) \ } \ - }else{ \ - devtools::install_version(package = $i2, version = '3.3.3', lib = '/usr/local/lib/R/site-library', dependencies = NA, verbose = TRUE, repos = $CRANREPO) \ + }else if($i2 == 'ggplot2'){ \ + devtools::install_version(package = 'ggplot2', version = '3.3.3', lib = '/usr/local/lib/R/site-library', dependencies = NA, verbose = TRUE, repos = $CRANREPO) \ + }else if($i2 == 'SARTools'){ \ + devtools::install_github('PF2-pasteur-fr/SARTools', build_opts='--no-resave-data', lib = '/usr/local/lib/R/site-library', dependencies = NA, verbose = TRUE, upgrade = "always") \ } \ " ; \ done \ @@ -563,10 +610,10 @@ RUN echo "\n\n\n\n================\n\napt-get update\n\n================\n\n\n\n sink(file = tempo, append = TRUE, type = 'message') ; \ message(paste0('\n\n\n\n================\n\nR PACKAGES INSTALLED\n\n================\n\n\n\n')) ; \ capture.output(as.data.frame(installed.packages())[1:4], file = tempo, append = TRUE, type = 'output') ; \ - df <- as.data.frame(installed.packages()) - for (i2 in 1:length(df)){ - df[, i2] <- gsub(x = df[, i2], replacement = '', pattern = '\n', fixed = TRUE) - } + df <- as.data.frame(installed.packages()) ; \ + for (i2 in 1:length(df)){ \ + df[, i2] <- gsub(x = df[, i2], replacement = '', pattern = '\n', fixed = TRUE) \ + } ; \ write.table(x = df, file = 'installed_r_packages.txt', row.names = FALSE, col.names = TRUE, append = FALSE, quote = FALSE, sep = ';') \ " \ && echo "\n\n\n\n================\n\napt-get autoremove\n\n================\n\n\n\n" >> building.log \ @@ -577,6 +624,6 @@ RUN echo "\n\n\n\n================\n\napt-get update\n\n================\n\n\n\n && rm -rf /var/lib/apt/lists/* \ | tee -a building.log -# dependencies=NA means c("Depends", "Imports", "LinkingTo"). Do no use TRUE -> install suggesting packages which inflates tremendously the image +# dependencies=NA means c("Depends", "Imports", "LinkingTo"). Do no use TRUE -> install suggesting packages which inflates tremendously the image. ENTRYPOINT ["/usr/bin/R"] diff --git a/R/v4.0.5/extended/v1.0/building.log b/R/v4.0.5/extended/v1.0/building.log index 3cadbd9e578bcc7742230d927e9d64e0acaa9a02..c2359a4dfa03f05b09d9d8ee76b8f445f2e710b2 100644 --- a/R/v4.0.5/extended/v1.0/building.log +++ b/R/v4.0.5/extended/v1.0/building.log @@ -12,22 +12,22 @@ apt-get update Get:1 http://deb.debian.org/debian testing InRelease [129 kB] -Ign:2 https://eddelbuettel.github.io/ppaR400 ./ InRelease -Get:3 https://eddelbuettel.github.io/ppaR400 ./ Release [1,204 B] -Ign:4 https://eddelbuettel.github.io/ppaR400 ./ Release.gpg -Get:5 http://deb.debian.org/debian experimental InRelease [75.4 kB] -Get:6 https://eddelbuettel.github.io/ppaR400 ./ Packages [26.4 kB] -Get:7 http://deb.debian.org/debian testing/main amd64 Packages.diff/Index [63.6 kB] -Ign:7 http://deb.debian.org/debian testing/main amd64 Packages.diff/Index -Get:8 http://deb.debian.org/debian testing/main amd64 Packages [8,275 kB] -Get:9 http://cdn-fastly.deb.debian.org/debian sid InRelease [165 kB] -Get:10 http://cdn-fastly.deb.debian.org/debian sid/main amd64 Packages.diff/Index [63.6 kB] -Ign:10 http://cdn-fastly.deb.debian.org/debian sid/main amd64 Packages.diff/Index -Get:11 http://cdn-fastly.deb.debian.org/debian sid/main amd64 Packages [8,860 kB] +Get:2 http://deb.debian.org/debian experimental InRelease [75.4 kB] +Ign:3 https://eddelbuettel.github.io/ppaR400 ./ InRelease +Get:4 http://deb.debian.org/debian testing/main amd64 Packages.diff/Index [63.6 kB] +Ign:4 http://deb.debian.org/debian testing/main amd64 Packages.diff/Index +Get:5 http://deb.debian.org/debian testing/main amd64 Packages [8,275 kB] +Get:6 http://cdn-fastly.deb.debian.org/debian sid InRelease [165 kB] +Get:7 https://eddelbuettel.github.io/ppaR400 ./ Release [1,204 B] +Ign:8 https://eddelbuettel.github.io/ppaR400 ./ Release.gpg +Get:9 http://cdn-fastly.deb.debian.org/debian sid/main amd64 Packages.diff/Index [63.6 kB] +Ign:9 http://cdn-fastly.deb.debian.org/debian sid/main amd64 Packages.diff/Index +Get:10 http://cdn-fastly.deb.debian.org/debian sid/main amd64 Packages [8,861 kB] +Get:11 https://eddelbuettel.github.io/ppaR400 ./ Packages [26.4 kB] Get:12 http://deb.debian.org/debian experimental/main amd64 Packages.diff/Index [63.3 kB] Ign:12 http://deb.debian.org/debian experimental/main amd64 Packages.diff/Index -Get:13 http://deb.debian.org/debian experimental/main amd64 Packages [439 kB] -Fetched 18.2 MB in 2s (8,060 kB/s) +Get:13 http://deb.debian.org/debian experimental/main amd64 Packages [447 kB] +Fetched 18.2 MB in 2s (8,084 kB/s) Reading package lists... @@ -72,7 +72,7 @@ Get:8 http://deb.debian.org/debian testing/main amd64 libfreetype6-dev amd64 2.1 Get:9 http://deb.debian.org/debian testing/main amd64 uuid-dev amd64 2.37.2-4 [95.8 kB] Get:10 http://deb.debian.org/debian testing/main amd64 libfontconfig-dev amd64 2.13.1-4.2 [368 kB] Get:11 http://deb.debian.org/debian testing/main amd64 libfontconfig1-dev amd64 2.13.1-4.2 [238 kB] -Fetched 2,784 kB in 0s (23.5 MB/s) +Fetched 2,784 kB in 2s (1,588 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18187 files and directories currently installed.) Preparing to unpack .../libuuid1_2.37.2-4_amd64.deb ... Unpacking libuuid1:amd64 (2.37.2-4) over (2.36.1-7) ... @@ -135,27 +135,49 @@ Reading state information... build-essential is already the newest version (12.9). build-essential set to manually installed. The following additional packages will be installed: - libc-bin libc-dev-bin libc-l10n libc6 libc6-dev libcurl3-gnutls libgit2-1.1 - libgnutls30 libhttp-parser-dev libhttp-parser2.9 libmbedcrypto3 - libmbedtls-dev libmbedtls12 libmbedx509-0 libssh2-1 libssh2-1-dev libssl1.1 - libxml2 locales rpcsvc-proto + libblkid-dev libblkid1 libc-bin libc-dev-bin libc-l10n libc6 libc6-dev + libcairo-gobject2 libcairo-script-interpreter2 libcurl3-gnutls libelf1 + libffi-dev libffi8 libgit2-1.1 libglib2.0-0 libglib2.0-bin libglib2.0-data + libglib2.0-dev libglib2.0-dev-bin libgnutls30 libhttp-parser-dev + libhttp-parser2.9 libice-dev liblzo2-2 libmbedcrypto3 libmbedtls-dev + libmbedtls12 libmbedx509-0 libmount-dev libmount1 libmpdec3 libpixman-1-dev + libpthread-stubs0-dev libpython3-stdlib libpython3.9-minimal + libpython3.9-stdlib libselinux1 libselinux1-dev libsepol-dev libsepol2 + libsm-dev libsqlite3-0 libssh2-1 libssh2-1-dev libssl1.1 libx11-6 libx11-dev + libxau-dev libxcb-render0-dev libxcb-shm0-dev libxcb1-dev libxdmcp-dev + libxext-dev libxext6 libxml2 libxrender-dev locales media-types python3 + python3-distutils python3-lib2to3 python3-minimal python3.9 + python3.9-minimal rpcsvc-proto x11proto-dev xorg-sgml-doctools xtrans-dev Suggested packages: - glibc-doc libnss-nis libnss-nisplus manpages-dev libcurl4-doc - libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev gnutls-bin - libmbedtls-doc libssl-doc + glibc-doc libnss-nis libnss-nisplus manpages-dev libcairo2-doc libcurl4-doc + libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev + libgirepository1.0-dev libglib2.0-doc libgdk-pixbuf2.0-bin + | libgdk-pixbuf2.0-dev libxml2-utils gnutls-bin libice-doc libmbedtls-doc + cryptsetup-bin libsm-doc libssl-doc libx11-doc libxcb-doc libxext-doc + libxt-doc python3-doc python3-tk python3-venv python3.9-venv python3.9-doc + binfmt-support Recommended packages: - manpages manpages-dev libc-devtools + manpages manpages-dev libc-devtools shared-mime-info xdg-user-dirs The following NEW packages will be installed: - libcurl3-gnutls libcurl4-gnutls-dev libgit2-1.1 libgit2-dev - libhttp-parser-dev libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev - libmbedtls12 libmbedx509-0 libssh2-1-dev libssl-dev libxml2 libxml2-dev - rpcsvc-proto + libblkid-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2-dev + libcurl3-gnutls libcurl4-gnutls-dev libelf1 libffi-dev libffi8 libgit2-1.1 + libgit2-dev libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin + libhttp-parser-dev libhttp-parser2.9 libice-dev liblzo2-2 libmbedcrypto3 + libmbedtls-dev libmbedtls12 libmbedx509-0 libmount-dev libmpdec3 + libpixman-1-dev libpthread-stubs0-dev libpython3-stdlib libpython3.9-minimal + libpython3.9-stdlib libselinux1-dev libsepol-dev libsepol2 libsm-dev + libsqlite3-0 libssh2-1-dev libssl-dev libx11-dev libxau-dev + libxcb-render0-dev libxcb-shm0-dev libxcb1-dev libxdmcp-dev libxext-dev + libxml2 libxml2-dev libxrender-dev libxt-dev media-types python3 + python3-distutils python3-lib2to3 python3-minimal python3.9 + python3.9-minimal rpcsvc-proto x11proto-dev xorg-sgml-doctools xtrans-dev The following packages will be upgraded: - libc-bin libc-dev-bin libc-l10n libc6 libc6-dev libgnutls30 libssh2-1 - libssl1.1 locales -9 upgraded, 15 newly installed, 0 to remove and 179 not upgraded. -Need to get 20.9 MB of archives. -After this operation, 24.9 MB of additional disk space will be used. + libblkid1 libc-bin libc-dev-bin libc-l10n libc6 libc6-dev libglib2.0-0 + libgnutls30 libmount1 libselinux1 libssh2-1 libssl1.1 libx11-6 libxext6 + locales +15 upgraded, 59 newly installed, 0 to remove and 173 not upgraded. +Need to get 38.6 MB of archives. +After this operation, 87.4 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian testing/main amd64 libc-l10n all 2.33-1 [863 kB] Get:2 http://deb.debian.org/debian testing/main amd64 libc-dev-bin amd64 2.33-1 [242 kB] Get:3 http://deb.debian.org/debian testing/main amd64 libc6-dev amd64 2.33-1 [2,272 kB] @@ -163,24 +185,74 @@ Get:4 http://deb.debian.org/debian testing/main amd64 rpcsvc-proto amd64 1.4.2-4 Get:5 http://deb.debian.org/debian testing/main amd64 locales all 2.33-1 [4,087 kB] Get:6 http://deb.debian.org/debian testing/main amd64 libc6 amd64 2.33-1 [2,826 kB] Get:7 http://deb.debian.org/debian testing/main amd64 libc-bin amd64 2.33-1 [829 kB] -Get:8 http://deb.debian.org/debian testing/main amd64 libgnutls30 amd64 3.7.2-4 [1,353 kB] -Get:9 http://deb.debian.org/debian testing/main amd64 libssl1.1 amd64 1.1.1m-1 [1,557 kB] -Get:10 http://deb.debian.org/debian testing/main amd64 libssh2-1 amd64 1.10.0-2 [178 kB] -Get:11 http://deb.debian.org/debian testing/main amd64 libcurl3-gnutls amd64 7.79.1-2 [355 kB] -Get:12 http://deb.debian.org/debian testing/main amd64 libcurl4-gnutls-dev amd64 7.79.1-2 [446 kB] -Get:13 http://deb.debian.org/debian testing/main amd64 libhttp-parser2.9 amd64 2.9.4-4 [22.1 kB] -Get:14 http://deb.debian.org/debian testing/main amd64 libmbedcrypto3 amd64 2.16.11-0.3 [222 kB] -Get:15 http://deb.debian.org/debian testing/main amd64 libmbedx509-0 amd64 2.16.11-0.3 [112 kB] -Get:16 http://deb.debian.org/debian testing/main amd64 libmbedtls12 amd64 2.16.11-0.3 [141 kB] -Get:17 http://deb.debian.org/debian testing/main amd64 libgit2-1.1 amd64 1.1.0+dfsg.1-4.1 [443 kB] -Get:18 http://deb.debian.org/debian testing/main amd64 libmbedtls-dev amd64 2.16.11-0.3 [519 kB] -Get:19 http://deb.debian.org/debian testing/main amd64 libssl-dev amd64 1.1.1m-1 [1,811 kB] -Get:20 http://deb.debian.org/debian testing/main amd64 libssh2-1-dev amd64 1.10.0-2 [308 kB] -Get:21 http://deb.debian.org/debian testing/main amd64 libhttp-parser-dev amd64 2.9.4-4 [21.8 kB] -Get:22 http://deb.debian.org/debian testing/main amd64 libgit2-dev amd64 1.1.0+dfsg.1-4.1 [736 kB] -Get:23 http://deb.debian.org/debian testing/main amd64 libxml2 amd64 2.9.12+dfsg-5+b1 [701 kB] -Get:24 http://deb.debian.org/debian testing/main amd64 libxml2-dev amd64 2.9.12+dfsg-5+b1 [797 kB] -Fetched 20.9 MB in 1s (36.8 MB/s) +Get:8 http://deb.debian.org/debian testing/main amd64 libssl1.1 amd64 1.1.1m-1 [1,557 kB] +Get:9 http://deb.debian.org/debian testing/main amd64 libpython3.9-minimal amd64 3.9.9-2 [804 kB] +Get:10 http://deb.debian.org/debian testing/main amd64 python3.9-minimal amd64 3.9.9-2 [1,924 kB] +Get:11 http://deb.debian.org/debian testing/main amd64 python3-minimal amd64 3.9.7-1 [38.4 kB] +Get:12 http://deb.debian.org/debian testing/main amd64 media-types all 4.0.0 [30.3 kB] +Get:13 http://deb.debian.org/debian testing/main amd64 libffi8 amd64 3.4.2-3 [24.8 kB] +Get:14 http://deb.debian.org/debian testing/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] +Get:15 http://deb.debian.org/debian testing/main amd64 libsqlite3-0 amd64 3.36.0-2 [815 kB] +Get:16 http://deb.debian.org/debian testing/main amd64 libpython3.9-stdlib amd64 3.9.9-2 [1,680 kB] +Get:17 http://deb.debian.org/debian testing/main amd64 python3.9 amd64 3.9.9-2 [484 kB] +Get:18 http://deb.debian.org/debian testing/main amd64 libpython3-stdlib amd64 3.9.7-1 [21.6 kB] +Get:19 http://deb.debian.org/debian testing/main amd64 python3 amd64 3.9.7-1 [38.0 kB] +Get:20 http://deb.debian.org/debian testing/main amd64 libblkid1 amd64 2.37.2-4 [201 kB] +Get:21 http://deb.debian.org/debian testing/main amd64 libgnutls30 amd64 3.7.2-4 [1,353 kB] +Get:22 http://deb.debian.org/debian testing/main amd64 libselinux1 amd64 3.3-1+b1 [88.6 kB] +Get:23 http://deb.debian.org/debian testing/main amd64 libmount1 amd64 2.37.2-4 [218 kB] +Get:24 http://deb.debian.org/debian testing/main amd64 libblkid-dev amd64 2.37.2-4 [232 kB] +Get:25 http://deb.debian.org/debian testing/main amd64 libglib2.0-0 amd64 2.70.2-1 [1,403 kB] +Get:26 http://deb.debian.org/debian testing/main amd64 libcairo-gobject2 amd64 1.16.0-5 [125 kB] +Get:27 http://deb.debian.org/debian testing/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] +Get:28 http://deb.debian.org/debian testing/main amd64 libcairo-script-interpreter2 amd64 1.16.0-5 [163 kB] +Get:29 http://deb.debian.org/debian testing/main amd64 libx11-6 amd64 2:1.7.2-2+b1 [772 kB] +Get:30 http://deb.debian.org/debian testing/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] +Get:31 http://deb.debian.org/debian testing/main amd64 x11proto-dev all 2021.5-1 [599 kB] +Get:32 http://deb.debian.org/debian testing/main amd64 libxau-dev amd64 1:1.0.9-1 [22.9 kB] +Get:33 http://deb.debian.org/debian testing/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] +Get:34 http://deb.debian.org/debian testing/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] +Get:35 http://deb.debian.org/debian testing/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5,344 B] +Get:36 http://deb.debian.org/debian testing/main amd64 libxcb1-dev amd64 1.14-3 [176 kB] +Get:37 http://deb.debian.org/debian testing/main amd64 libx11-dev amd64 2:1.7.2-2+b1 [844 kB] +Get:38 http://deb.debian.org/debian testing/main amd64 libxrender-dev amd64 1:0.9.10-1 [40.8 kB] +Get:39 http://deb.debian.org/debian testing/main amd64 libxext6 amd64 2:1.3.4-1 [53.1 kB] +Get:40 http://deb.debian.org/debian testing/main amd64 libxext-dev amd64 2:1.3.4-1 [107 kB] +Get:41 http://deb.debian.org/debian testing/main amd64 libice-dev amd64 2:1.0.10-1 [67.1 kB] +Get:42 http://deb.debian.org/debian testing/main amd64 libsm-dev amd64 2:1.2.3-1 [38.0 kB] +Get:43 http://deb.debian.org/debian testing/main amd64 libpixman-1-dev amd64 0.40.0-1 [560 kB] +Get:44 http://deb.debian.org/debian testing/main amd64 libxcb-render0-dev amd64 1.14-3 [114 kB] +Get:45 http://deb.debian.org/debian testing/main amd64 libxcb-shm0-dev amd64 1.14-3 [102 kB] +Get:46 http://deb.debian.org/debian testing/main amd64 libffi-dev amd64 3.4.2-3 [60.4 kB] +Get:47 http://deb.debian.org/debian testing/main amd64 libglib2.0-data all 2.70.2-1 [1,198 kB] +Get:48 http://deb.debian.org/debian testing/main amd64 libelf1 amd64 0.186-1 [179 kB] +Get:49 http://deb.debian.org/debian testing/main amd64 libglib2.0-bin amd64 2.70.2-1 [146 kB] +Get:50 http://deb.debian.org/debian testing/main amd64 python3-lib2to3 all 3.9.9-3 [79.5 kB] +Get:51 http://deb.debian.org/debian testing/main amd64 python3-distutils all 3.9.9-3 [146 kB] +Get:52 http://deb.debian.org/debian testing/main amd64 libglib2.0-dev-bin amd64 2.70.2-1 [183 kB] +Get:53 http://deb.debian.org/debian testing/main amd64 libsepol2 amd64 3.3-1 [278 kB] +Get:54 http://deb.debian.org/debian testing/main amd64 libsepol-dev amd64 3.3-1 [351 kB] +Get:55 http://deb.debian.org/debian testing/main amd64 libselinux1-dev amd64 3.3-1+b1 [169 kB] +Get:56 http://deb.debian.org/debian testing/main amd64 libmount-dev amd64 2.37.2-4 [79.0 kB] +Get:57 http://deb.debian.org/debian testing/main amd64 libglib2.0-dev amd64 2.70.2-1 [1,601 kB] +Get:58 http://deb.debian.org/debian testing/main amd64 libcairo2-dev amd64 1.16.0-5 [739 kB] +Get:59 http://deb.debian.org/debian testing/main amd64 libssh2-1 amd64 1.10.0-2 [178 kB] +Get:60 http://deb.debian.org/debian testing/main amd64 libcurl3-gnutls amd64 7.79.1-2 [355 kB] +Get:61 http://deb.debian.org/debian testing/main amd64 libcurl4-gnutls-dev amd64 7.79.1-2 [446 kB] +Get:62 http://deb.debian.org/debian testing/main amd64 libhttp-parser2.9 amd64 2.9.4-4 [22.1 kB] +Get:63 http://deb.debian.org/debian testing/main amd64 libmbedcrypto3 amd64 2.16.11-0.3 [222 kB] +Get:64 http://deb.debian.org/debian testing/main amd64 libmbedx509-0 amd64 2.16.11-0.3 [112 kB] +Get:65 http://deb.debian.org/debian testing/main amd64 libmbedtls12 amd64 2.16.11-0.3 [141 kB] +Get:66 http://deb.debian.org/debian testing/main amd64 libgit2-1.1 amd64 1.1.0+dfsg.1-4.1 [443 kB] +Get:67 http://deb.debian.org/debian testing/main amd64 libmbedtls-dev amd64 2.16.11-0.3 [519 kB] +Get:68 http://deb.debian.org/debian testing/main amd64 libssl-dev amd64 1.1.1m-1 [1,811 kB] +Get:69 http://deb.debian.org/debian testing/main amd64 libssh2-1-dev amd64 1.10.0-2 [308 kB] +Get:70 http://deb.debian.org/debian testing/main amd64 libhttp-parser-dev amd64 2.9.4-4 [21.8 kB] +Get:71 http://deb.debian.org/debian testing/main amd64 libgit2-dev amd64 1.1.0+dfsg.1-4.1 [736 kB] +Get:72 http://deb.debian.org/debian testing/main amd64 libxml2 amd64 2.9.12+dfsg-5+b1 [701 kB] +Get:73 http://deb.debian.org/debian testing/main amd64 libxml2-dev amd64 2.9.12+dfsg-5+b1 [797 kB] +Get:74 http://deb.debian.org/debian testing/main amd64 libxt-dev amd64 1:1.2.0-1 [407 kB] +Fetched 38.6 MB in 17s (2,307 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18340 files and directories currently installed.) Preparing to unpack .../0-libc-l10n_2.33-1_all.deb ... Unpacking libc-l10n (2.33-1) over (2.31-11) ... @@ -213,62 +285,221 @@ Preparing to unpack .../libc-bin_2.33-1_amd64.deb ... Unpacking libc-bin (2.33-1) over (2.31-11) ... Setting up libc-bin (2.33-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18331 files and directories currently installed.) -Preparing to unpack .../libgnutls30_3.7.2-4_amd64.deb ... -Unpacking libgnutls30:amd64 (3.7.2-4) over (3.7.1-1) ... -Setting up libgnutls30:amd64 (3.7.2-4) ... -(Reading database ... 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Setting up libc-l10n (2.33-1) ... +Setting up libpixman-1-dev:amd64 (0.40.0-1) ... +Setting up libsqlite3-0:amd64 (3.36.0-2) ... +Setting up liblzo2-2:amd64 (2.10-2) ... Setting up locales (2.33-1) ... Installing new version of config file /etc/locale.alias ... debconf: unable to initialize frontend: Dialog @@ -277,24 +508,67 @@ debconf: falling back to frontend: Readline Generating locales (this might take a while)... en_US.UTF-8... done Generation complete. +Setting up libpthread-stubs0-dev:amd64 (0.4-1) ... +Setting up xtrans-dev (1.4.0-1) ... +Setting up libglib2.0-data (2.70.2-1) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up libssl-dev:amd64 (1.1.1m-1) ... +Setting up libsepol2:amd64 (3.3-1) ... +Setting up libsepol-dev:amd64 (3.3-1) ... +Setting up libffi8:amd64 (3.4.2-3) ... +Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libmbedcrypto3:amd64 (2.16.11-0.3) ... +Setting up libx11-6:amd64 (2:1.7.2-2+b1) ... Setting up libssh2-1:amd64 (1.10.0-2) ... +Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up libc-dev-bin (2.33-1) ... +Setting up libelf1:amd64 (0.186-1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5+b1) ... Setting up libhttp-parser2.9:amd64 (2.9.4-4) ... +Setting up libpython3.9-stdlib:amd64 (3.9.9-2) ... +Setting up libpython3-stdlib:amd64 (3.9.7-1) ... +Setting up x11proto-dev (2021.5-1) ... +Setting up libcairo-script-interpreter2:amd64 (1.16.0-5) ... Setting up libhttp-parser-dev (2.9.4-4) ... +Setting up libxau-dev:amd64 (1:1.0.9-1) ... +Setting up libice-dev:amd64 (2:1.0.10-1) ... Setting up libmbedx509-0:amd64 (2.16.11-0.3) ... +Setting up libsm-dev:amd64 (2:1.2.3-1) ... +Setting up libselinux1-dev:amd64 (3.3-1+b1) ... +Setting up libglib2.0-0:amd64 (2.70.2-1) ... +No schema files found: doing nothing. Setting up libmbedtls12:amd64 (2.16.11-0.3) ... +Setting up libxext6:amd64 (2:1.3.4-1) ... +Setting up libglib2.0-bin (2.70.2-1) ... Setting up libcurl3-gnutls:amd64 (7.79.1-2) ... Setting up libmbedtls-dev:amd64 (2.16.11-0.3) ... Setting up libcurl4-gnutls-dev:amd64 (7.79.1-2) ... +Setting up libffi-dev:amd64 (3.4.2-3) ... +Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up libxml2-dev:amd64 (2.9.12+dfsg-5+b1) ... Setting up libssh2-1-dev:amd64 (1.10.0-2) ... Setting up libc6-dev:amd64 (2.33-1) ... +Setting up libcairo-gobject2:amd64 (1.16.0-5) ... +Setting up python3.9 (3.9.9-2) ... +Setting up libblkid-dev:amd64 (2.37.2-4) ... +Setting up libxcb1-dev:amd64 (1.14-3) ... Setting up libgit2-1.1:amd64 (1.1.0+dfsg.1-4.1) ... +Setting up libx11-dev:amd64 (2:1.7.2-2+b1) ... +Setting up python3 (3.9.7-1) ... +running python rtupdate hooks for python3.9... +running python post-rtupdate hooks for python3.9... +Setting up libxcb-shm0-dev:amd64 (1.14-3) ... +Setting up libxt-dev:amd64 (1:1.2.0-1) ... +Setting up libxcb-render0-dev:amd64 (1.14-3) ... +Setting up libxext-dev:amd64 (2:1.3.4-1) ... +Setting up python3-lib2to3 (3.9.9-3) ... +Setting up libxrender-dev:amd64 (1:0.9.10-1) ... +Setting up libmount-dev:amd64 (2.37.2-4) ... Setting up libgit2-dev:amd64 (1.1.0+dfsg.1-4.1) ... +Setting up python3-distutils (3.9.9-3) ... +Setting up libglib2.0-dev-bin (2.70.2-1) ... +Setting up libglib2.0-dev:amd64 (2.70.2-1) ... +Setting up libcairo2-dev:amd64 (1.16.0-5) ... Processing triggers for libc-bin (2.33-1) ... @@ -302,7 +576,7 @@ Processing triggers for libc-bin (2.33-1) ... ================ -R PACKAGE INSTALLATION 1 / 240: BiocManager +R PACKAGE INSTALLATION 1 / 238: BiocManager ================ @@ -316,26 +590,26 @@ downloaded 256 KB The downloaded source packages are in - ‘/tmp/RtmpHtAp0f/downloaded_packages’ + ‘/tmp/RtmplLuGJF/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/BiocManager_1.30.16.tar.gz' Content type 'application/x-gzip' length 262502 bytes (256 KB) ================================================== downloaded 256 KB -foundpkgs: BiocManager, /tmp/RtmpHtAp0f/downloaded_packages/BiocManager_1.30.16.tar.gz -files: /tmp/RtmpHtAp0f/downloaded_packages/BiocManager_1.30.16.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpHtAp0f/downloaded_packages/BiocManager_1.30.16.tar.gz'' +foundpkgs: BiocManager, /tmp/RtmplLuGJF/downloaded_packages/BiocManager_1.30.16.tar.gz +files: /tmp/RtmplLuGJF/downloaded_packages/BiocManager_1.30.16.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmplLuGJF/downloaded_packages/BiocManager_1.30.16.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpHtAp0f/downloaded_packages’ + ‘/tmp/RtmplLuGJF/downloaded_packages’ ================ -R PACKAGE INSTALLATION 2 / 240: devtools +R PACKAGE INSTALLATION 2 / 238: devtools ================ @@ -699,26 +973,26 @@ downloaded 363 KB The downloaded source packages are in - ‘/tmp/Rtmp1PCboR/downloaded_packages’ + ‘/tmp/Rtmpo3IgR3/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/devtools_2.4.3.tar.gz' Content type 'application/x-gzip' length 372413 bytes (363 KB) ================================================== downloaded 363 KB -foundpkgs: devtools, /tmp/Rtmp1PCboR/downloaded_packages/devtools_2.4.3.tar.gz -files: /tmp/Rtmp1PCboR/downloaded_packages/devtools_2.4.3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1PCboR/downloaded_packages/devtools_2.4.3.tar.gz'' +foundpkgs: devtools, /tmp/Rtmpo3IgR3/downloaded_packages/devtools_2.4.3.tar.gz +files: /tmp/Rtmpo3IgR3/downloaded_packages/devtools_2.4.3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpo3IgR3/downloaded_packages/devtools_2.4.3.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp1PCboR/downloaded_packages’ + ‘/tmp/Rtmpo3IgR3/downloaded_packages’ ================ -R PACKAGE INSTALLATION 3 / 240: abind +R PACKAGE INSTALLATION 3 / 238: abind ================ @@ -732,26 +1006,26 @@ downloaded 21 KB The downloaded source packages are in - ‘/tmp/RtmpPJLuiV/downloaded_packages’ + ‘/tmp/RtmpeYmh0g/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/abind_1.4-5.tar.gz' Content type 'application/x-gzip' length 21810 bytes (21 KB) ================================================== downloaded 21 KB -foundpkgs: abind, /tmp/RtmpPJLuiV/downloaded_packages/abind_1.4-5.tar.gz -files: /tmp/RtmpPJLuiV/downloaded_packages/abind_1.4-5.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpPJLuiV/downloaded_packages/abind_1.4-5.tar.gz'' +foundpkgs: abind, /tmp/RtmpeYmh0g/downloaded_packages/abind_1.4-5.tar.gz +files: /tmp/RtmpeYmh0g/downloaded_packages/abind_1.4-5.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeYmh0g/downloaded_packages/abind_1.4-5.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpPJLuiV/downloaded_packages’ + ‘/tmp/RtmpeYmh0g/downloaded_packages’ ================ -R PACKAGE INSTALLATION 4 / 240: annotate +R PACKAGE INSTALLATION 4 / 238: annotate ================ @@ -849,49 +1123,49 @@ Content type 'application/x-gzip' length 1872445 bytes (1.8 MB) ================================================== downloaded 1.8 MB -foundpkgs: bit, bit64, blob, Rcpp, plogr, IRanges, RSQLite, S4Vectors, AnnotationDbi, XML, Biobase, DBI, xtable, BiocGenerics, BiocVersion, annotate, /tmp/Rtmp1bKrD3/downloaded_packages/bit_4.0.4.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/bit64_4.0.5.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/blob_1.2.2.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/Rcpp_1.0.7.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/plogr_0.2.0.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/IRanges_2.24.1.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/RSQLite_2.2.9.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/S4Vectors_0.28.1.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/AnnotationDbi_1.52.0.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/XML_3.99-0.8.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/Biobase_2.50.0.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/DBI_1.1.2.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/xtable_1.8-4.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/BiocGenerics_0.36.1.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/BiocVersion_3.12.0.tar.gz, /tmp/Rtmp1bKrD3/downloaded_packages/annotate_1.68.0.tar.gz -files: /tmp/Rtmp1bKrD3/downloaded_packages/bit_4.0.4.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/bit64_4.0.5.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/blob_1.2.2.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/Rcpp_1.0.7.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/plogr_0.2.0.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/IRanges_2.24.1.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/RSQLite_2.2.9.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/S4Vectors_0.28.1.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/AnnotationDbi_1.52.0.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/XML_3.99-0.8.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/Biobase_2.50.0.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/DBI_1.1.2.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/xtable_1.8-4.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/BiocGenerics_0.36.1.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/BiocVersion_3.12.0.tar.gz, - /tmp/Rtmp1bKrD3/downloaded_packages/annotate_1.68.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/bit_4.0.4.tar.gz'' -2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/blob_1.2.2.tar.gz'' -3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/Rcpp_1.0.7.tar.gz'' -4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/plogr_0.2.0.tar.gz'' -5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/XML_3.99-0.8.tar.gz'' -6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/DBI_1.1.2.tar.gz'' -7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/xtable_1.8-4.tar.gz'' -8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/BiocGenerics_0.36.1.tar.gz'' -9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/BiocVersion_3.12.0.tar.gz'' -10): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/bit64_4.0.5.tar.gz'' -11): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/S4Vectors_0.28.1.tar.gz'' -12): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/Biobase_2.50.0.tar.gz'' -13): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/IRanges_2.24.1.tar.gz'' -14): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/RSQLite_2.2.9.tar.gz'' -15): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/AnnotationDbi_1.52.0.tar.gz'' -16): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bKrD3/downloaded_packages/annotate_1.68.0.tar.gz'' +foundpkgs: bit, bit64, blob, Rcpp, plogr, IRanges, RSQLite, S4Vectors, AnnotationDbi, XML, Biobase, DBI, xtable, BiocGenerics, BiocVersion, annotate, /tmp/RtmpTQZsBY/downloaded_packages/bit_4.0.4.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/bit64_4.0.5.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/blob_1.2.2.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/Rcpp_1.0.7.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/plogr_0.2.0.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/IRanges_2.24.1.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/RSQLite_2.2.9.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/S4Vectors_0.28.1.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/AnnotationDbi_1.52.0.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/XML_3.99-0.8.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/Biobase_2.50.0.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/DBI_1.1.2.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/xtable_1.8-4.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/BiocGenerics_0.36.1.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/BiocVersion_3.12.0.tar.gz, /tmp/RtmpTQZsBY/downloaded_packages/annotate_1.68.0.tar.gz +files: /tmp/RtmpTQZsBY/downloaded_packages/bit_4.0.4.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/bit64_4.0.5.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/blob_1.2.2.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/Rcpp_1.0.7.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/plogr_0.2.0.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/IRanges_2.24.1.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/RSQLite_2.2.9.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/S4Vectors_0.28.1.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/AnnotationDbi_1.52.0.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/XML_3.99-0.8.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/Biobase_2.50.0.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/DBI_1.1.2.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/xtable_1.8-4.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/BiocGenerics_0.36.1.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/BiocVersion_3.12.0.tar.gz, + /tmp/RtmpTQZsBY/downloaded_packages/annotate_1.68.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/bit_4.0.4.tar.gz'' +2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/blob_1.2.2.tar.gz'' +3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/Rcpp_1.0.7.tar.gz'' +4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/plogr_0.2.0.tar.gz'' +5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/XML_3.99-0.8.tar.gz'' +6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/DBI_1.1.2.tar.gz'' +7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/xtable_1.8-4.tar.gz'' +8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/BiocGenerics_0.36.1.tar.gz'' +9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/BiocVersion_3.12.0.tar.gz'' +10): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/bit64_4.0.5.tar.gz'' +11): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/S4Vectors_0.28.1.tar.gz'' +12): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/Biobase_2.50.0.tar.gz'' +13): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/IRanges_2.24.1.tar.gz'' +14): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/RSQLite_2.2.9.tar.gz'' +15): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/AnnotationDbi_1.52.0.tar.gz'' +16): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTQZsBY/downloaded_packages/annotate_1.68.0.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp1bKrD3/downloaded_packages’ + ‘/tmp/RtmpTQZsBY/downloaded_packages’ ================ -R PACKAGE INSTALLATION 5 / 240: AnnotationDbi +R PACKAGE INSTALLATION 5 / 238: AnnotationDbi ================ @@ -913,7 +1187,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 6 / 240: askpass +R PACKAGE INSTALLATION 6 / 238: askpass ================ @@ -927,26 +1201,26 @@ downloaded 5730 bytes The downloaded source packages are in - ‘/tmp/RtmpnAPv4i/downloaded_packages’ + ‘/tmp/RtmpDltSRO/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/askpass_1.1.tar.gz' Content type 'application/x-gzip' length 5730 bytes ================================================== downloaded 5730 bytes -foundpkgs: askpass, /tmp/RtmpnAPv4i/downloaded_packages/askpass_1.1.tar.gz -files: /tmp/RtmpnAPv4i/downloaded_packages/askpass_1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpnAPv4i/downloaded_packages/askpass_1.1.tar.gz'' +foundpkgs: askpass, /tmp/RtmpDltSRO/downloaded_packages/askpass_1.1.tar.gz +files: /tmp/RtmpDltSRO/downloaded_packages/askpass_1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpDltSRO/downloaded_packages/askpass_1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpnAPv4i/downloaded_packages’ + ‘/tmp/RtmpDltSRO/downloaded_packages’ ================ -R PACKAGE INSTALLATION 7 / 240: assertthat +R PACKAGE INSTALLATION 7 / 238: assertthat ================ @@ -960,26 +1234,26 @@ downloaded 12 KB The downloaded source packages are in - ‘/tmp/RtmpmoEnoq/downloaded_packages’ + ‘/tmp/RtmpgYIFbJ/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/assertthat_0.2.1.tar.gz' Content type 'application/x-gzip' length 12742 bytes (12 KB) ================================================== downloaded 12 KB -foundpkgs: assertthat, /tmp/RtmpmoEnoq/downloaded_packages/assertthat_0.2.1.tar.gz -files: /tmp/RtmpmoEnoq/downloaded_packages/assertthat_0.2.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmoEnoq/downloaded_packages/assertthat_0.2.1.tar.gz'' +foundpkgs: assertthat, /tmp/RtmpgYIFbJ/downloaded_packages/assertthat_0.2.1.tar.gz +files: /tmp/RtmpgYIFbJ/downloaded_packages/assertthat_0.2.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpgYIFbJ/downloaded_packages/assertthat_0.2.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpmoEnoq/downloaded_packages’ + ‘/tmp/RtmpgYIFbJ/downloaded_packages’ ================ -R PACKAGE INSTALLATION 8 / 240: backports +R PACKAGE INSTALLATION 8 / 238: backports ================ @@ -993,26 +1267,26 @@ downloaded 25 KB The downloaded source packages are in - ‘/tmp/RtmpByVZLn/downloaded_packages’ + ‘/tmp/RtmpdrvEUz/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/backports_1.4.1.tar.gz' Content type 'application/x-gzip' length 26201 bytes (25 KB) ================================================== downloaded 25 KB -foundpkgs: backports, /tmp/RtmpByVZLn/downloaded_packages/backports_1.4.1.tar.gz -files: /tmp/RtmpByVZLn/downloaded_packages/backports_1.4.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpByVZLn/downloaded_packages/backports_1.4.1.tar.gz'' +foundpkgs: backports, /tmp/RtmpdrvEUz/downloaded_packages/backports_1.4.1.tar.gz +files: /tmp/RtmpdrvEUz/downloaded_packages/backports_1.4.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdrvEUz/downloaded_packages/backports_1.4.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpByVZLn/downloaded_packages’ + ‘/tmp/RtmpdrvEUz/downloaded_packages’ ================ -R PACKAGE INSTALLATION 9 / 240: base64enc +R PACKAGE INSTALLATION 9 / 238: base64enc ================ @@ -1026,26 +1300,26 @@ downloaded 7833 bytes The downloaded source packages are in - ‘/tmp/RtmpabFxMG/downloaded_packages’ + ‘/tmp/RtmpIW8MQW/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/base64enc_0.1-3.tar.gz' Content type 'application/x-gzip' length 7833 bytes ================================================== downloaded 7833 bytes -foundpkgs: base64enc, /tmp/RtmpabFxMG/downloaded_packages/base64enc_0.1-3.tar.gz -files: /tmp/RtmpabFxMG/downloaded_packages/base64enc_0.1-3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpabFxMG/downloaded_packages/base64enc_0.1-3.tar.gz'' +foundpkgs: base64enc, /tmp/RtmpIW8MQW/downloaded_packages/base64enc_0.1-3.tar.gz +files: /tmp/RtmpIW8MQW/downloaded_packages/base64enc_0.1-3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpIW8MQW/downloaded_packages/base64enc_0.1-3.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpabFxMG/downloaded_packages’ + ‘/tmp/RtmpIW8MQW/downloaded_packages’ ================ -R PACKAGE INSTALLATION 10 / 240: BH +R PACKAGE INSTALLATION 10 / 238: BH ================ @@ -1059,26 +1333,26 @@ downloaded 12.7 MB The downloaded source packages are in - ‘/tmp/Rtmpvrl92w/downloaded_packages’ + ‘/tmp/Rtmp4bp8an/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/BH_1.78.0-0.tar.gz' Content type 'application/x-gzip' length 13269768 bytes (12.7 MB) ================================================== downloaded 12.7 MB -foundpkgs: BH, /tmp/Rtmpvrl92w/downloaded_packages/BH_1.78.0-0.tar.gz -files: /tmp/Rtmpvrl92w/downloaded_packages/BH_1.78.0-0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpvrl92w/downloaded_packages/BH_1.78.0-0.tar.gz'' +foundpkgs: BH, /tmp/Rtmp4bp8an/downloaded_packages/BH_1.78.0-0.tar.gz +files: /tmp/Rtmp4bp8an/downloaded_packages/BH_1.78.0-0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp4bp8an/downloaded_packages/BH_1.78.0-0.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpvrl92w/downloaded_packages’ + ‘/tmp/Rtmp4bp8an/downloaded_packages’ ================ -R PACKAGE INSTALLATION 11 / 240: Biobase +R PACKAGE INSTALLATION 11 / 238: Biobase ================ @@ -1100,7 +1374,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 12 / 240: BiocGenerics +R PACKAGE INSTALLATION 12 / 238: BiocGenerics ================ @@ -1122,7 +1396,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 13 / 240: BiocParallel +R PACKAGE INSTALLATION 13 / 238: BiocParallel ================ @@ -1170,29 +1444,29 @@ Content type 'application/x-gzip' length 931919 bytes (910 KB) ================================================== downloaded 910 KB -foundpkgs: formatR, lambda.r, futile.options, futile.logger, snow, BiocParallel, /tmp/Rtmp7lCkxQ/downloaded_packages/formatR_1.11.tar.gz, /tmp/Rtmp7lCkxQ/downloaded_packages/lambda.r_1.2.4.tar.gz, /tmp/Rtmp7lCkxQ/downloaded_packages/futile.options_1.0.1.tar.gz, /tmp/Rtmp7lCkxQ/downloaded_packages/futile.logger_1.4.3.tar.gz, /tmp/Rtmp7lCkxQ/downloaded_packages/snow_0.4-4.tar.gz, /tmp/Rtmp7lCkxQ/downloaded_packages/BiocParallel_1.24.1.tar.gz -files: /tmp/Rtmp7lCkxQ/downloaded_packages/formatR_1.11.tar.gz, - /tmp/Rtmp7lCkxQ/downloaded_packages/lambda.r_1.2.4.tar.gz, - /tmp/Rtmp7lCkxQ/downloaded_packages/futile.options_1.0.1.tar.gz, - /tmp/Rtmp7lCkxQ/downloaded_packages/futile.logger_1.4.3.tar.gz, - /tmp/Rtmp7lCkxQ/downloaded_packages/snow_0.4-4.tar.gz, - /tmp/Rtmp7lCkxQ/downloaded_packages/BiocParallel_1.24.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7lCkxQ/downloaded_packages/formatR_1.11.tar.gz'' -2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7lCkxQ/downloaded_packages/futile.options_1.0.1.tar.gz'' -3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7lCkxQ/downloaded_packages/snow_0.4-4.tar.gz'' -4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7lCkxQ/downloaded_packages/lambda.r_1.2.4.tar.gz'' -5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7lCkxQ/downloaded_packages/futile.logger_1.4.3.tar.gz'' -6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7lCkxQ/downloaded_packages/BiocParallel_1.24.1.tar.gz'' +foundpkgs: formatR, lambda.r, futile.options, futile.logger, snow, BiocParallel, /tmp/RtmpSb84r0/downloaded_packages/formatR_1.11.tar.gz, /tmp/RtmpSb84r0/downloaded_packages/lambda.r_1.2.4.tar.gz, /tmp/RtmpSb84r0/downloaded_packages/futile.options_1.0.1.tar.gz, /tmp/RtmpSb84r0/downloaded_packages/futile.logger_1.4.3.tar.gz, /tmp/RtmpSb84r0/downloaded_packages/snow_0.4-4.tar.gz, /tmp/RtmpSb84r0/downloaded_packages/BiocParallel_1.24.1.tar.gz +files: /tmp/RtmpSb84r0/downloaded_packages/formatR_1.11.tar.gz, + /tmp/RtmpSb84r0/downloaded_packages/lambda.r_1.2.4.tar.gz, + /tmp/RtmpSb84r0/downloaded_packages/futile.options_1.0.1.tar.gz, + /tmp/RtmpSb84r0/downloaded_packages/futile.logger_1.4.3.tar.gz, + /tmp/RtmpSb84r0/downloaded_packages/snow_0.4-4.tar.gz, + /tmp/RtmpSb84r0/downloaded_packages/BiocParallel_1.24.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSb84r0/downloaded_packages/formatR_1.11.tar.gz'' +2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSb84r0/downloaded_packages/futile.options_1.0.1.tar.gz'' +3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSb84r0/downloaded_packages/snow_0.4-4.tar.gz'' +4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSb84r0/downloaded_packages/lambda.r_1.2.4.tar.gz'' +5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSb84r0/downloaded_packages/futile.logger_1.4.3.tar.gz'' +6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSb84r0/downloaded_packages/BiocParallel_1.24.1.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp7lCkxQ/downloaded_packages’ + ‘/tmp/RtmpSb84r0/downloaded_packages’ ================ -R PACKAGE INSTALLATION 14 / 240: BiocVersion +R PACKAGE INSTALLATION 14 / 238: BiocVersion ================ @@ -1214,7 +1488,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 15 / 240: Biostrings +R PACKAGE INSTALLATION 15 / 238: Biostrings ================ @@ -1247,23 +1521,23 @@ Content type 'application/x-gzip' length 12709623 bytes (12.1 MB) ================================================== downloaded 12.1 MB -foundpkgs: zlibbioc, XVector, Biostrings, /tmp/RtmptqpmAT/downloaded_packages/zlibbioc_1.36.0.tar.gz, /tmp/RtmptqpmAT/downloaded_packages/XVector_0.30.0.tar.gz, /tmp/RtmptqpmAT/downloaded_packages/Biostrings_2.58.0.tar.gz -files: /tmp/RtmptqpmAT/downloaded_packages/zlibbioc_1.36.0.tar.gz, - /tmp/RtmptqpmAT/downloaded_packages/XVector_0.30.0.tar.gz, - /tmp/RtmptqpmAT/downloaded_packages/Biostrings_2.58.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmptqpmAT/downloaded_packages/zlibbioc_1.36.0.tar.gz'' -2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmptqpmAT/downloaded_packages/XVector_0.30.0.tar.gz'' -3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmptqpmAT/downloaded_packages/Biostrings_2.58.0.tar.gz'' +foundpkgs: zlibbioc, XVector, Biostrings, /tmp/RtmpywPgHV/downloaded_packages/zlibbioc_1.36.0.tar.gz, /tmp/RtmpywPgHV/downloaded_packages/XVector_0.30.0.tar.gz, /tmp/RtmpywPgHV/downloaded_packages/Biostrings_2.58.0.tar.gz +files: /tmp/RtmpywPgHV/downloaded_packages/zlibbioc_1.36.0.tar.gz, + /tmp/RtmpywPgHV/downloaded_packages/XVector_0.30.0.tar.gz, + /tmp/RtmpywPgHV/downloaded_packages/Biostrings_2.58.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpywPgHV/downloaded_packages/zlibbioc_1.36.0.tar.gz'' +2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpywPgHV/downloaded_packages/XVector_0.30.0.tar.gz'' +3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpywPgHV/downloaded_packages/Biostrings_2.58.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmptqpmAT/downloaded_packages’ + ‘/tmp/RtmpywPgHV/downloaded_packages’ ================ -R PACKAGE INSTALLATION 16 / 240: bit +R PACKAGE INSTALLATION 16 / 238: bit ================ @@ -1277,26 +1551,26 @@ downloaded 273 KB The downloaded source packages are in - ‘/tmp/Rtmpcs9H9l/downloaded_packages’ + ‘/tmp/RtmpSUu9Mi/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/bit_4.0.4.tar.gz' Content type 'application/x-gzip' length 279723 bytes (273 KB) ================================================== downloaded 273 KB -foundpkgs: bit, /tmp/Rtmpcs9H9l/downloaded_packages/bit_4.0.4.tar.gz -files: /tmp/Rtmpcs9H9l/downloaded_packages/bit_4.0.4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpcs9H9l/downloaded_packages/bit_4.0.4.tar.gz'' +foundpkgs: bit, /tmp/RtmpSUu9Mi/downloaded_packages/bit_4.0.4.tar.gz +files: /tmp/RtmpSUu9Mi/downloaded_packages/bit_4.0.4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSUu9Mi/downloaded_packages/bit_4.0.4.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpcs9H9l/downloaded_packages’ + ‘/tmp/RtmpSUu9Mi/downloaded_packages’ ================ -R PACKAGE INSTALLATION 17 / 240: bit64 +R PACKAGE INSTALLATION 17 / 238: bit64 ================ @@ -1310,26 +1584,26 @@ downloaded 131 KB The downloaded source packages are in - ‘/tmp/RtmpHFLrq0/downloaded_packages’ + ‘/tmp/RtmpowZJnL/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/bit64_4.0.5.tar.gz' Content type 'application/x-gzip' length 135091 bytes (131 KB) ================================================== downloaded 131 KB -foundpkgs: bit64, /tmp/RtmpHFLrq0/downloaded_packages/bit64_4.0.5.tar.gz -files: /tmp/RtmpHFLrq0/downloaded_packages/bit64_4.0.5.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpHFLrq0/downloaded_packages/bit64_4.0.5.tar.gz'' +foundpkgs: bit64, /tmp/RtmpowZJnL/downloaded_packages/bit64_4.0.5.tar.gz +files: /tmp/RtmpowZJnL/downloaded_packages/bit64_4.0.5.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpowZJnL/downloaded_packages/bit64_4.0.5.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpHFLrq0/downloaded_packages’ + ‘/tmp/RtmpowZJnL/downloaded_packages’ ================ -R PACKAGE INSTALLATION 18 / 240: bitops +R PACKAGE INSTALLATION 18 / 238: bitops ================ @@ -1343,26 +1617,26 @@ downloaded 10 KB The downloaded source packages are in - ‘/tmp/Rtmp6lcUyI/downloaded_packages’ + ‘/tmp/Rtmp4ASyuX/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/bitops_1.0-7.tar.gz' Content type 'application/x-gzip' length 10809 bytes (10 KB) ================================================== downloaded 10 KB -foundpkgs: bitops, /tmp/Rtmp6lcUyI/downloaded_packages/bitops_1.0-7.tar.gz -files: /tmp/Rtmp6lcUyI/downloaded_packages/bitops_1.0-7.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6lcUyI/downloaded_packages/bitops_1.0-7.tar.gz'' +foundpkgs: bitops, /tmp/Rtmp4ASyuX/downloaded_packages/bitops_1.0-7.tar.gz +files: /tmp/Rtmp4ASyuX/downloaded_packages/bitops_1.0-7.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp4ASyuX/downloaded_packages/bitops_1.0-7.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp6lcUyI/downloaded_packages’ + ‘/tmp/Rtmp4ASyuX/downloaded_packages’ ================ -R PACKAGE INSTALLATION 19 / 240: blob +R PACKAGE INSTALLATION 19 / 238: blob ================ @@ -1376,26 +1650,26 @@ downloaded 10194 bytes The downloaded source packages are in - ‘/tmp/RtmpKJ4b6R/downloaded_packages’ + ‘/tmp/RtmpLR7y2D/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/blob_1.2.2.tar.gz' Content type 'application/x-gzip' length 10194 bytes ================================================== downloaded 10194 bytes -foundpkgs: blob, /tmp/RtmpKJ4b6R/downloaded_packages/blob_1.2.2.tar.gz -files: /tmp/RtmpKJ4b6R/downloaded_packages/blob_1.2.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpKJ4b6R/downloaded_packages/blob_1.2.2.tar.gz'' +foundpkgs: blob, /tmp/RtmpLR7y2D/downloaded_packages/blob_1.2.2.tar.gz +files: /tmp/RtmpLR7y2D/downloaded_packages/blob_1.2.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLR7y2D/downloaded_packages/blob_1.2.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpKJ4b6R/downloaded_packages’ + ‘/tmp/RtmpLR7y2D/downloaded_packages’ ================ -R PACKAGE INSTALLATION 20 / 240: brew +R PACKAGE INSTALLATION 20 / 238: brew ================ @@ -1409,26 +1683,26 @@ downloaded 81 KB The downloaded source packages are in - ‘/tmp/RtmpVZ2Q2w/downloaded_packages’ + ‘/tmp/RtmplhEDwl/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/brew_1.0-6.tar.gz' Content type 'application/x-gzip' length 83315 bytes (81 KB) ================================================== downloaded 81 KB -foundpkgs: brew, /tmp/RtmpVZ2Q2w/downloaded_packages/brew_1.0-6.tar.gz -files: /tmp/RtmpVZ2Q2w/downloaded_packages/brew_1.0-6.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpVZ2Q2w/downloaded_packages/brew_1.0-6.tar.gz'' +foundpkgs: brew, /tmp/RtmplhEDwl/downloaded_packages/brew_1.0-6.tar.gz +files: /tmp/RtmplhEDwl/downloaded_packages/brew_1.0-6.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmplhEDwl/downloaded_packages/brew_1.0-6.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpVZ2Q2w/downloaded_packages’ + ‘/tmp/RtmplhEDwl/downloaded_packages’ ================ -R PACKAGE INSTALLATION 21 / 240: brio +R PACKAGE INSTALLATION 21 / 238: brio ================ @@ -1442,26 +1716,26 @@ downloaded 12 KB The downloaded source packages are in - ‘/tmp/RtmpgX3Ses/downloaded_packages’ + ‘/tmp/RtmpRAysYT/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/brio_1.1.3.tar.gz' Content type 'application/x-gzip' length 12629 bytes (12 KB) ================================================== downloaded 12 KB -foundpkgs: brio, /tmp/RtmpgX3Ses/downloaded_packages/brio_1.1.3.tar.gz -files: /tmp/RtmpgX3Ses/downloaded_packages/brio_1.1.3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpgX3Ses/downloaded_packages/brio_1.1.3.tar.gz'' +foundpkgs: brio, /tmp/RtmpRAysYT/downloaded_packages/brio_1.1.3.tar.gz +files: /tmp/RtmpRAysYT/downloaded_packages/brio_1.1.3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpRAysYT/downloaded_packages/brio_1.1.3.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpgX3Ses/downloaded_packages’ + ‘/tmp/RtmpRAysYT/downloaded_packages’ ================ -R PACKAGE INSTALLATION 22 / 240: broom +R PACKAGE INSTALLATION 22 / 238: broom ================ @@ -1545,26 +1819,26 @@ downloaded 619 KB The downloaded source packages are in - ‘/tmp/RtmprMJqAk/downloaded_packages’ + ‘/tmp/RtmpP8fFjI/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/broom_0.7.10.tar.gz' Content type 'application/x-gzip' length 634053 bytes (619 KB) ================================================== downloaded 619 KB -foundpkgs: broom, /tmp/RtmprMJqAk/downloaded_packages/broom_0.7.10.tar.gz -files: /tmp/RtmprMJqAk/downloaded_packages/broom_0.7.10.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmprMJqAk/downloaded_packages/broom_0.7.10.tar.gz'' +foundpkgs: broom, /tmp/RtmpP8fFjI/downloaded_packages/broom_0.7.10.tar.gz +files: /tmp/RtmpP8fFjI/downloaded_packages/broom_0.7.10.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpP8fFjI/downloaded_packages/broom_0.7.10.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmprMJqAk/downloaded_packages’ + ‘/tmp/RtmpP8fFjI/downloaded_packages’ ================ -R PACKAGE INSTALLATION 23 / 240: cachem +R PACKAGE INSTALLATION 23 / 238: cachem ================ @@ -1578,26 +1852,26 @@ downloaded 24 KB The downloaded source packages are in - ‘/tmp/RtmpqdqIA4/downloaded_packages’ + ‘/tmp/RtmpaQpgyd/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/cachem_1.0.6.tar.gz' Content type 'application/x-gzip' length 25413 bytes (24 KB) ================================================== downloaded 24 KB -foundpkgs: cachem, /tmp/RtmpqdqIA4/downloaded_packages/cachem_1.0.6.tar.gz -files: /tmp/RtmpqdqIA4/downloaded_packages/cachem_1.0.6.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpqdqIA4/downloaded_packages/cachem_1.0.6.tar.gz'' +foundpkgs: cachem, /tmp/RtmpaQpgyd/downloaded_packages/cachem_1.0.6.tar.gz +files: /tmp/RtmpaQpgyd/downloaded_packages/cachem_1.0.6.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpaQpgyd/downloaded_packages/cachem_1.0.6.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpqdqIA4/downloaded_packages’ + ‘/tmp/RtmpaQpgyd/downloaded_packages’ ================ -R PACKAGE INSTALLATION 24 / 240: Cairo +R PACKAGE INSTALLATION 24 / 238: Cairo ================ @@ -1611,35 +1885,26 @@ downloaded 88 KB The downloaded source packages are in - ‘/tmp/RtmpjMtPIv/downloaded_packages’ -'getOption("repos")' replaces Bioconductor standard repositories, see -'?repositories' for details - -replacement repositories: - CRAN: https://cloud.r-project.org - -Bioconductor version 3.12 (BiocManager 1.30.16), R 4.0.5 (2021-03-31) -Installing package(s) 'Cairo' + ‘/tmp/RtmpZ7u8TB/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL -trying URL 'https://cloud.r-project.org/src/contrib/Cairo_1.5-14.tar.gz' +trying URL 'https://cran.irsn.fr/src/contrib/Cairo_1.5-14.tar.gz' Content type 'application/x-gzip' length 90677 bytes (88 KB) ================================================== downloaded 88 KB -foundpkgs: Cairo, /tmp/RtmpjMtPIv/downloaded_packages/Cairo_1.5-14.tar.gz -files: /tmp/RtmpjMtPIv/downloaded_packages/Cairo_1.5-14.tar.gz -Warning in .inet_warning(msg) : - installation of package ‘Cairo’ had non-zero exit status +foundpkgs: Cairo, /tmp/RtmpZ7u8TB/downloaded_packages/Cairo_1.5-14.tar.gz +files: /tmp/RtmpZ7u8TB/downloaded_packages/Cairo_1.5-14.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpZ7u8TB/downloaded_packages/Cairo_1.5-14.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpjMtPIv/downloaded_packages’ + ‘/tmp/RtmpZ7u8TB/downloaded_packages’ ================ -R PACKAGE INSTALLATION 25 / 240: callr +R PACKAGE INSTALLATION 25 / 238: callr ================ @@ -1653,26 +1918,26 @@ downloaded 72 KB The downloaded source packages are in - ‘/tmp/RtmpUdHLS6/downloaded_packages’ + ‘/tmp/RtmpuF8jqa/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/callr_3.7.0.tar.gz' Content type 'application/x-gzip' length 74518 bytes (72 KB) ================================================== downloaded 72 KB -foundpkgs: callr, /tmp/RtmpUdHLS6/downloaded_packages/callr_3.7.0.tar.gz -files: /tmp/RtmpUdHLS6/downloaded_packages/callr_3.7.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpUdHLS6/downloaded_packages/callr_3.7.0.tar.gz'' +foundpkgs: callr, /tmp/RtmpuF8jqa/downloaded_packages/callr_3.7.0.tar.gz +files: /tmp/RtmpuF8jqa/downloaded_packages/callr_3.7.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpuF8jqa/downloaded_packages/callr_3.7.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpUdHLS6/downloaded_packages’ + ‘/tmp/RtmpuF8jqa/downloaded_packages’ ================ -R PACKAGE INSTALLATION 26 / 240: car +R PACKAGE INSTALLATION 26 / 238: car ================ @@ -1881,26 +2146,26 @@ downloaded 323 KB The downloaded source packages are in - ‘/tmp/RtmpqktAPX/downloaded_packages’ + ‘/tmp/Rtmpn1bCi9/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/car_3.0-12.tar.gz' Content type 'application/x-gzip' length 331330 bytes (323 KB) ================================================== downloaded 323 KB -foundpkgs: car, /tmp/RtmpqktAPX/downloaded_packages/car_3.0-12.tar.gz -files: /tmp/RtmpqktAPX/downloaded_packages/car_3.0-12.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpqktAPX/downloaded_packages/car_3.0-12.tar.gz'' +foundpkgs: car, /tmp/Rtmpn1bCi9/downloaded_packages/car_3.0-12.tar.gz +files: /tmp/Rtmpn1bCi9/downloaded_packages/car_3.0-12.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpn1bCi9/downloaded_packages/car_3.0-12.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpqktAPX/downloaded_packages’ + ‘/tmp/Rtmpn1bCi9/downloaded_packages’ ================ -R PACKAGE INSTALLATION 27 / 240: carData +R PACKAGE INSTALLATION 27 / 238: carData ================ @@ -1914,26 +2179,26 @@ downloaded 970 KB The downloaded source packages are in - ‘/tmp/RtmpPy5ANL/downloaded_packages’ + ‘/tmp/RtmpuHNrHP/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/carData_3.0-4.tar.gz' Content type 'application/x-gzip' length 993536 bytes (970 KB) ================================================== downloaded 970 KB -foundpkgs: carData, /tmp/RtmpPy5ANL/downloaded_packages/carData_3.0-4.tar.gz -files: /tmp/RtmpPy5ANL/downloaded_packages/carData_3.0-4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpPy5ANL/downloaded_packages/carData_3.0-4.tar.gz'' +foundpkgs: carData, /tmp/RtmpuHNrHP/downloaded_packages/carData_3.0-4.tar.gz +files: /tmp/RtmpuHNrHP/downloaded_packages/carData_3.0-4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpuHNrHP/downloaded_packages/carData_3.0-4.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpPy5ANL/downloaded_packages’ + ‘/tmp/RtmpuHNrHP/downloaded_packages’ ================ -R PACKAGE INSTALLATION 28 / 240: caTools +R PACKAGE INSTALLATION 28 / 238: caTools ================ @@ -1947,26 +2212,26 @@ downloaded 63 KB The downloaded source packages are in - ‘/tmp/Rtmp8yAVFZ/downloaded_packages’ + ‘/tmp/Rtmp1zBL8b/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/caTools_1.18.2.tar.gz' Content type 'application/x-gzip' length 64960 bytes (63 KB) ================================================== downloaded 63 KB -foundpkgs: caTools, /tmp/Rtmp8yAVFZ/downloaded_packages/caTools_1.18.2.tar.gz -files: /tmp/Rtmp8yAVFZ/downloaded_packages/caTools_1.18.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8yAVFZ/downloaded_packages/caTools_1.18.2.tar.gz'' +foundpkgs: caTools, /tmp/Rtmp1zBL8b/downloaded_packages/caTools_1.18.2.tar.gz +files: /tmp/Rtmp1zBL8b/downloaded_packages/caTools_1.18.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1zBL8b/downloaded_packages/caTools_1.18.2.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp8yAVFZ/downloaded_packages’ + ‘/tmp/Rtmp1zBL8b/downloaded_packages’ ================ -R PACKAGE INSTALLATION 29 / 240: cellranger +R PACKAGE INSTALLATION 29 / 238: cellranger ================ @@ -1985,26 +2250,26 @@ downloaded 62 KB The downloaded source packages are in - ‘/tmp/RtmpU1WCyJ/downloaded_packages’ + ‘/tmp/RtmpA4YhEi/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/cellranger_1.1.0.tar.gz' Content type 'application/x-gzip' length 63857 bytes (62 KB) ================================================== downloaded 62 KB -foundpkgs: cellranger, /tmp/RtmpU1WCyJ/downloaded_packages/cellranger_1.1.0.tar.gz -files: /tmp/RtmpU1WCyJ/downloaded_packages/cellranger_1.1.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpU1WCyJ/downloaded_packages/cellranger_1.1.0.tar.gz'' +foundpkgs: cellranger, /tmp/RtmpA4YhEi/downloaded_packages/cellranger_1.1.0.tar.gz +files: /tmp/RtmpA4YhEi/downloaded_packages/cellranger_1.1.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpA4YhEi/downloaded_packages/cellranger_1.1.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpU1WCyJ/downloaded_packages’ + ‘/tmp/RtmpA4YhEi/downloaded_packages’ ================ -R PACKAGE INSTALLATION 30 / 240: CGHbase +R PACKAGE INSTALLATION 30 / 238: CGHbase ================ @@ -2037,23 +2302,23 @@ Content type 'application/x-gzip' length 868343 bytes (847 KB) ================================================== downloaded 847 KB -foundpkgs: limma, marray, CGHbase, /tmp/RtmpNq8cG1/downloaded_packages/limma_3.46.0.tar.gz, /tmp/RtmpNq8cG1/downloaded_packages/marray_1.68.0.tar.gz, /tmp/RtmpNq8cG1/downloaded_packages/CGHbase_1.50.0.tar.gz -files: /tmp/RtmpNq8cG1/downloaded_packages/limma_3.46.0.tar.gz, - /tmp/RtmpNq8cG1/downloaded_packages/marray_1.68.0.tar.gz, - /tmp/RtmpNq8cG1/downloaded_packages/CGHbase_1.50.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpNq8cG1/downloaded_packages/limma_3.46.0.tar.gz'' -2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpNq8cG1/downloaded_packages/marray_1.68.0.tar.gz'' -3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpNq8cG1/downloaded_packages/CGHbase_1.50.0.tar.gz'' +foundpkgs: limma, marray, CGHbase, /tmp/RtmpVoADft/downloaded_packages/limma_3.46.0.tar.gz, /tmp/RtmpVoADft/downloaded_packages/marray_1.68.0.tar.gz, /tmp/RtmpVoADft/downloaded_packages/CGHbase_1.50.0.tar.gz +files: /tmp/RtmpVoADft/downloaded_packages/limma_3.46.0.tar.gz, + /tmp/RtmpVoADft/downloaded_packages/marray_1.68.0.tar.gz, + /tmp/RtmpVoADft/downloaded_packages/CGHbase_1.50.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpVoADft/downloaded_packages/limma_3.46.0.tar.gz'' +2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpVoADft/downloaded_packages/marray_1.68.0.tar.gz'' +3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpVoADft/downloaded_packages/CGHbase_1.50.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpNq8cG1/downloaded_packages’ + ‘/tmp/RtmpVoADft/downloaded_packages’ ================ -R PACKAGE INSTALLATION 31 / 240: CGHcall +R PACKAGE INSTALLATION 31 / 238: CGHcall ================ @@ -2091,25 +2356,25 @@ Content type 'application/x-gzip' length 390302 bytes (381 KB) ================================================== downloaded 381 KB -foundpkgs: impute, DNAcopy, snowfall, CGHcall, /tmp/Rtmpxa36Mw/downloaded_packages/impute_1.64.0.tar.gz, /tmp/Rtmpxa36Mw/downloaded_packages/DNAcopy_1.64.0.tar.gz, /tmp/Rtmpxa36Mw/downloaded_packages/snowfall_1.84-6.1.tar.gz, /tmp/Rtmpxa36Mw/downloaded_packages/CGHcall_2.52.0.tar.gz -files: /tmp/Rtmpxa36Mw/downloaded_packages/impute_1.64.0.tar.gz, - /tmp/Rtmpxa36Mw/downloaded_packages/DNAcopy_1.64.0.tar.gz, - /tmp/Rtmpxa36Mw/downloaded_packages/snowfall_1.84-6.1.tar.gz, - /tmp/Rtmpxa36Mw/downloaded_packages/CGHcall_2.52.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpxa36Mw/downloaded_packages/impute_1.64.0.tar.gz'' -2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpxa36Mw/downloaded_packages/DNAcopy_1.64.0.tar.gz'' -3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpxa36Mw/downloaded_packages/snowfall_1.84-6.1.tar.gz'' -4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpxa36Mw/downloaded_packages/CGHcall_2.52.0.tar.gz'' +foundpkgs: impute, DNAcopy, snowfall, CGHcall, /tmp/RtmpXxx8pl/downloaded_packages/impute_1.64.0.tar.gz, /tmp/RtmpXxx8pl/downloaded_packages/DNAcopy_1.64.0.tar.gz, /tmp/RtmpXxx8pl/downloaded_packages/snowfall_1.84-6.1.tar.gz, /tmp/RtmpXxx8pl/downloaded_packages/CGHcall_2.52.0.tar.gz +files: /tmp/RtmpXxx8pl/downloaded_packages/impute_1.64.0.tar.gz, + /tmp/RtmpXxx8pl/downloaded_packages/DNAcopy_1.64.0.tar.gz, + /tmp/RtmpXxx8pl/downloaded_packages/snowfall_1.84-6.1.tar.gz, + /tmp/RtmpXxx8pl/downloaded_packages/CGHcall_2.52.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXxx8pl/downloaded_packages/impute_1.64.0.tar.gz'' +2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXxx8pl/downloaded_packages/DNAcopy_1.64.0.tar.gz'' +3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXxx8pl/downloaded_packages/snowfall_1.84-6.1.tar.gz'' +4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXxx8pl/downloaded_packages/CGHcall_2.52.0.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpxa36Mw/downloaded_packages’ + ‘/tmp/RtmpXxx8pl/downloaded_packages’ ================ -R PACKAGE INSTALLATION 32 / 240: cli +R PACKAGE INSTALLATION 32 / 238: cli ================ @@ -2123,26 +2388,26 @@ downloaded 470 KB The downloaded source packages are in - ‘/tmp/RtmpZFxMuQ/downloaded_packages’ + ‘/tmp/Rtmpo8rnFs/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/cli_3.1.0.tar.gz' Content type 'application/x-gzip' length 482062 bytes (470 KB) ================================================== downloaded 470 KB -foundpkgs: cli, /tmp/RtmpZFxMuQ/downloaded_packages/cli_3.1.0.tar.gz -files: /tmp/RtmpZFxMuQ/downloaded_packages/cli_3.1.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpZFxMuQ/downloaded_packages/cli_3.1.0.tar.gz'' +foundpkgs: cli, /tmp/Rtmpo8rnFs/downloaded_packages/cli_3.1.0.tar.gz +files: /tmp/Rtmpo8rnFs/downloaded_packages/cli_3.1.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpo8rnFs/downloaded_packages/cli_3.1.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpZFxMuQ/downloaded_packages’ + ‘/tmp/Rtmpo8rnFs/downloaded_packages’ ================ -R PACKAGE INSTALLATION 33 / 240: clipr +R PACKAGE INSTALLATION 33 / 238: clipr ================ @@ -2156,26 +2421,26 @@ downloaded 20 KB The downloaded source packages are in - ‘/tmp/RtmpcLYw60/downloaded_packages’ + ‘/tmp/RtmpVyxviJ/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/clipr_0.7.1.tar.gz' Content type 'application/x-gzip' length 20882 bytes (20 KB) ================================================== downloaded 20 KB -foundpkgs: clipr, /tmp/RtmpcLYw60/downloaded_packages/clipr_0.7.1.tar.gz -files: /tmp/RtmpcLYw60/downloaded_packages/clipr_0.7.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpcLYw60/downloaded_packages/clipr_0.7.1.tar.gz'' +foundpkgs: clipr, /tmp/RtmpVyxviJ/downloaded_packages/clipr_0.7.1.tar.gz +files: /tmp/RtmpVyxviJ/downloaded_packages/clipr_0.7.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpVyxviJ/downloaded_packages/clipr_0.7.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpcLYw60/downloaded_packages’ + ‘/tmp/RtmpVyxviJ/downloaded_packages’ ================ -R PACKAGE INSTALLATION 34 / 240: colorspace +R PACKAGE INSTALLATION 34 / 238: colorspace ================ @@ -2189,26 +2454,26 @@ downloaded 2.1 MB The downloaded source packages are in - ‘/tmp/Rtmp0sWbL8/downloaded_packages’ + ‘/tmp/RtmpVenzbs/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/colorspace_2.0-2.tar.gz' Content type 'application/x-gzip' length 2196563 bytes (2.1 MB) ================================================== downloaded 2.1 MB -foundpkgs: colorspace, /tmp/Rtmp0sWbL8/downloaded_packages/colorspace_2.0-2.tar.gz -files: /tmp/Rtmp0sWbL8/downloaded_packages/colorspace_2.0-2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp0sWbL8/downloaded_packages/colorspace_2.0-2.tar.gz'' +foundpkgs: colorspace, /tmp/RtmpVenzbs/downloaded_packages/colorspace_2.0-2.tar.gz +files: /tmp/RtmpVenzbs/downloaded_packages/colorspace_2.0-2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpVenzbs/downloaded_packages/colorspace_2.0-2.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp0sWbL8/downloaded_packages’ + ‘/tmp/RtmpVenzbs/downloaded_packages’ ================ -R PACKAGE INSTALLATION 35 / 240: commonmark +R PACKAGE INSTALLATION 35 / 238: commonmark ================ @@ -2222,26 +2487,26 @@ downloaded 130 KB The downloaded source packages are in - ‘/tmp/RtmpiJippm/downloaded_packages’ + ‘/tmp/RtmpTvEdp2/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/commonmark_1.7.tar.gz' Content type 'application/x-gzip' length 134002 bytes (130 KB) ================================================== downloaded 130 KB -foundpkgs: commonmark, /tmp/RtmpiJippm/downloaded_packages/commonmark_1.7.tar.gz -files: /tmp/RtmpiJippm/downloaded_packages/commonmark_1.7.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpiJippm/downloaded_packages/commonmark_1.7.tar.gz'' +foundpkgs: commonmark, /tmp/RtmpTvEdp2/downloaded_packages/commonmark_1.7.tar.gz +files: /tmp/RtmpTvEdp2/downloaded_packages/commonmark_1.7.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTvEdp2/downloaded_packages/commonmark_1.7.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpiJippm/downloaded_packages’ + ‘/tmp/RtmpTvEdp2/downloaded_packages’ ================ -R PACKAGE INSTALLATION 36 / 240: conquer +R PACKAGE INSTALLATION 36 / 238: conquer ================ @@ -2255,26 +2520,26 @@ downloaded 23 KB The downloaded source packages are in - ‘/tmp/RtmpDHhzUF/downloaded_packages’ + ‘/tmp/RtmpA4mCmw/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/conquer_1.2.1.tar.gz' Content type 'application/x-gzip' length 23869 bytes (23 KB) ================================================== downloaded 23 KB -foundpkgs: conquer, /tmp/RtmpDHhzUF/downloaded_packages/conquer_1.2.1.tar.gz -files: /tmp/RtmpDHhzUF/downloaded_packages/conquer_1.2.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpDHhzUF/downloaded_packages/conquer_1.2.1.tar.gz'' +foundpkgs: conquer, /tmp/RtmpA4mCmw/downloaded_packages/conquer_1.2.1.tar.gz +files: /tmp/RtmpA4mCmw/downloaded_packages/conquer_1.2.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpA4mCmw/downloaded_packages/conquer_1.2.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpDHhzUF/downloaded_packages’ + ‘/tmp/RtmpA4mCmw/downloaded_packages’ ================ -R PACKAGE INSTALLATION 37 / 240: corrplot +R PACKAGE INSTALLATION 37 / 238: corrplot ================ @@ -2288,26 +2553,26 @@ downloaded 3.6 MB The downloaded source packages are in - ‘/tmp/Rtmpw7MH6A/downloaded_packages’ + ‘/tmp/RtmpUWojDE/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/corrplot_0.92.tar.gz' Content type 'application/x-gzip' length 3765850 bytes (3.6 MB) ================================================== downloaded 3.6 MB -foundpkgs: corrplot, /tmp/Rtmpw7MH6A/downloaded_packages/corrplot_0.92.tar.gz -files: /tmp/Rtmpw7MH6A/downloaded_packages/corrplot_0.92.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpw7MH6A/downloaded_packages/corrplot_0.92.tar.gz'' +foundpkgs: corrplot, /tmp/RtmpUWojDE/downloaded_packages/corrplot_0.92.tar.gz +files: /tmp/RtmpUWojDE/downloaded_packages/corrplot_0.92.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpUWojDE/downloaded_packages/corrplot_0.92.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpw7MH6A/downloaded_packages’ + ‘/tmp/RtmpUWojDE/downloaded_packages’ ================ -R PACKAGE INSTALLATION 38 / 240: covr +R PACKAGE INSTALLATION 38 / 238: covr ================ @@ -2331,26 +2596,26 @@ downloaded 143 KB The downloaded source packages are in - ‘/tmp/Rtmp63EFK2/downloaded_packages’ + ‘/tmp/RtmpNt4xuA/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/covr_3.5.1.tar.gz' Content type 'application/x-gzip' length 146686 bytes (143 KB) ================================================== downloaded 143 KB -foundpkgs: covr, /tmp/Rtmp63EFK2/downloaded_packages/covr_3.5.1.tar.gz -files: /tmp/Rtmp63EFK2/downloaded_packages/covr_3.5.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp63EFK2/downloaded_packages/covr_3.5.1.tar.gz'' +foundpkgs: covr, /tmp/RtmpNt4xuA/downloaded_packages/covr_3.5.1.tar.gz +files: /tmp/RtmpNt4xuA/downloaded_packages/covr_3.5.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpNt4xuA/downloaded_packages/covr_3.5.1.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp63EFK2/downloaded_packages’ + ‘/tmp/RtmpNt4xuA/downloaded_packages’ ================ -R PACKAGE INSTALLATION 39 / 240: cpp11 +R PACKAGE INSTALLATION 39 / 238: cpp11 ================ @@ -2364,26 +2629,26 @@ downloaded 310 KB The downloaded source packages are in - ‘/tmp/RtmpavgiWF/downloaded_packages’ + ‘/tmp/RtmpaOa2HA/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/cpp11_0.4.2.tar.gz' Content type 'application/x-gzip' length 317708 bytes (310 KB) ================================================== downloaded 310 KB -foundpkgs: cpp11, /tmp/RtmpavgiWF/downloaded_packages/cpp11_0.4.2.tar.gz -files: /tmp/RtmpavgiWF/downloaded_packages/cpp11_0.4.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpavgiWF/downloaded_packages/cpp11_0.4.2.tar.gz'' +foundpkgs: cpp11, /tmp/RtmpaOa2HA/downloaded_packages/cpp11_0.4.2.tar.gz +files: /tmp/RtmpaOa2HA/downloaded_packages/cpp11_0.4.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpaOa2HA/downloaded_packages/cpp11_0.4.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpavgiWF/downloaded_packages’ + ‘/tmp/RtmpaOa2HA/downloaded_packages’ ================ -R PACKAGE INSTALLATION 40 / 240: crayon +R PACKAGE INSTALLATION 40 / 238: crayon ================ @@ -2397,26 +2662,26 @@ downloaded 38 KB The downloaded source packages are in - ‘/tmp/RtmpaeE0BA/downloaded_packages’ + ‘/tmp/Rtmp6rsvgX/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/crayon_1.4.2.tar.gz' Content type 'application/x-gzip' length 39704 bytes (38 KB) ================================================== downloaded 38 KB -foundpkgs: crayon, /tmp/RtmpaeE0BA/downloaded_packages/crayon_1.4.2.tar.gz -files: /tmp/RtmpaeE0BA/downloaded_packages/crayon_1.4.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpaeE0BA/downloaded_packages/crayon_1.4.2.tar.gz'' +foundpkgs: crayon, /tmp/Rtmp6rsvgX/downloaded_packages/crayon_1.4.2.tar.gz +files: /tmp/Rtmp6rsvgX/downloaded_packages/crayon_1.4.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6rsvgX/downloaded_packages/crayon_1.4.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpaeE0BA/downloaded_packages’ + ‘/tmp/Rtmp6rsvgX/downloaded_packages’ ================ -R PACKAGE INSTALLATION 41 / 240: credentials +R PACKAGE INSTALLATION 41 / 238: credentials ================ @@ -2430,26 +2695,26 @@ downloaded 224 KB The downloaded source packages are in - ‘/tmp/RtmpjlTz2q/downloaded_packages’ + ‘/tmp/RtmpGW2ljn/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/credentials_1.3.2.tar.gz' Content type 'application/x-gzip' length 230070 bytes (224 KB) ================================================== downloaded 224 KB -foundpkgs: credentials, /tmp/RtmpjlTz2q/downloaded_packages/credentials_1.3.2.tar.gz -files: /tmp/RtmpjlTz2q/downloaded_packages/credentials_1.3.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpjlTz2q/downloaded_packages/credentials_1.3.2.tar.gz'' +foundpkgs: credentials, /tmp/RtmpGW2ljn/downloaded_packages/credentials_1.3.2.tar.gz +files: /tmp/RtmpGW2ljn/downloaded_packages/credentials_1.3.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpGW2ljn/downloaded_packages/credentials_1.3.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpjlTz2q/downloaded_packages’ + ‘/tmp/RtmpGW2ljn/downloaded_packages’ ================ -R PACKAGE INSTALLATION 42 / 240: crosstalk +R PACKAGE INSTALLATION 42 / 238: crosstalk ================ @@ -2468,26 +2733,26 @@ downloaded 289 KB The downloaded source packages are in - ‘/tmp/Rtmpy7uu63/downloaded_packages’ + ‘/tmp/Rtmp7TDmeD/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/crosstalk_1.2.0.tar.gz' Content type 'application/x-gzip' length 296495 bytes (289 KB) ================================================== downloaded 289 KB -foundpkgs: crosstalk, /tmp/Rtmpy7uu63/downloaded_packages/crosstalk_1.2.0.tar.gz -files: /tmp/Rtmpy7uu63/downloaded_packages/crosstalk_1.2.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpy7uu63/downloaded_packages/crosstalk_1.2.0.tar.gz'' +foundpkgs: crosstalk, /tmp/Rtmp7TDmeD/downloaded_packages/crosstalk_1.2.0.tar.gz +files: /tmp/Rtmp7TDmeD/downloaded_packages/crosstalk_1.2.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7TDmeD/downloaded_packages/crosstalk_1.2.0.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpy7uu63/downloaded_packages’ + ‘/tmp/Rtmp7TDmeD/downloaded_packages’ ================ -R PACKAGE INSTALLATION 43 / 240: curl +R PACKAGE INSTALLATION 43 / 238: curl ================ @@ -2501,26 +2766,26 @@ downloaded 774 KB The downloaded source packages are in - ‘/tmp/RtmpeM0hx4/downloaded_packages’ + ‘/tmp/RtmpQCl9eO/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/curl_4.3.2.tar.gz' Content type 'application/x-gzip' length 793345 bytes (774 KB) ================================================== downloaded 774 KB -foundpkgs: curl, /tmp/RtmpeM0hx4/downloaded_packages/curl_4.3.2.tar.gz -files: /tmp/RtmpeM0hx4/downloaded_packages/curl_4.3.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeM0hx4/downloaded_packages/curl_4.3.2.tar.gz'' +foundpkgs: curl, /tmp/RtmpQCl9eO/downloaded_packages/curl_4.3.2.tar.gz +files: /tmp/RtmpQCl9eO/downloaded_packages/curl_4.3.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQCl9eO/downloaded_packages/curl_4.3.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpeM0hx4/downloaded_packages’ + ‘/tmp/RtmpQCl9eO/downloaded_packages’ ================ -R PACKAGE INSTALLATION 44 / 240: data.table +R PACKAGE INSTALLATION 44 / 238: data.table ================ @@ -2534,26 +2799,26 @@ downloaded 5.1 MB The downloaded source packages are in - ‘/tmp/RtmpOGnCtq/downloaded_packages’ + ‘/tmp/RtmpfzeUeD/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/data.table_1.14.2.tar.gz' Content type 'application/x-gzip' length 5301817 bytes (5.1 MB) ================================================== downloaded 5.1 MB -foundpkgs: data.table, /tmp/RtmpOGnCtq/downloaded_packages/data.table_1.14.2.tar.gz -files: /tmp/RtmpOGnCtq/downloaded_packages/data.table_1.14.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpOGnCtq/downloaded_packages/data.table_1.14.2.tar.gz'' +foundpkgs: data.table, /tmp/RtmpfzeUeD/downloaded_packages/data.table_1.14.2.tar.gz +files: /tmp/RtmpfzeUeD/downloaded_packages/data.table_1.14.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpfzeUeD/downloaded_packages/data.table_1.14.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpOGnCtq/downloaded_packages’ + ‘/tmp/RtmpfzeUeD/downloaded_packages’ ================ -R PACKAGE INSTALLATION 45 / 240: DBI +R PACKAGE INSTALLATION 45 / 238: DBI ================ @@ -2567,26 +2832,26 @@ downloaded 689 KB The downloaded source packages are in - ‘/tmp/RtmptG1yZu/downloaded_packages’ + ‘/tmp/Rtmp7USabt/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/DBI_1.1.2.tar.gz' Content type 'application/x-gzip' length 706518 bytes (689 KB) ================================================== downloaded 689 KB -foundpkgs: DBI, /tmp/RtmptG1yZu/downloaded_packages/DBI_1.1.2.tar.gz -files: /tmp/RtmptG1yZu/downloaded_packages/DBI_1.1.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmptG1yZu/downloaded_packages/DBI_1.1.2.tar.gz'' +foundpkgs: DBI, /tmp/Rtmp7USabt/downloaded_packages/DBI_1.1.2.tar.gz +files: /tmp/Rtmp7USabt/downloaded_packages/DBI_1.1.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7USabt/downloaded_packages/DBI_1.1.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmptG1yZu/downloaded_packages’ + ‘/tmp/Rtmp7USabt/downloaded_packages’ ================ -R PACKAGE INSTALLATION 46 / 240: dbplyr +R PACKAGE INSTALLATION 46 / 238: dbplyr ================ @@ -2600,26 +2865,26 @@ downloaded 568 KB The downloaded source packages are in - ‘/tmp/RtmpkDa3ni/downloaded_packages’ + ‘/tmp/Rtmp9kqFDy/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/dbplyr_2.1.1.tar.gz' Content type 'application/x-gzip' length 581845 bytes (568 KB) ================================================== downloaded 568 KB -foundpkgs: dbplyr, /tmp/RtmpkDa3ni/downloaded_packages/dbplyr_2.1.1.tar.gz -files: /tmp/RtmpkDa3ni/downloaded_packages/dbplyr_2.1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpkDa3ni/downloaded_packages/dbplyr_2.1.1.tar.gz'' +foundpkgs: dbplyr, /tmp/Rtmp9kqFDy/downloaded_packages/dbplyr_2.1.1.tar.gz +files: /tmp/Rtmp9kqFDy/downloaded_packages/dbplyr_2.1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp9kqFDy/downloaded_packages/dbplyr_2.1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpkDa3ni/downloaded_packages’ + ‘/tmp/Rtmp9kqFDy/downloaded_packages’ ================ -R PACKAGE INSTALLATION 47 / 240: DelayedArray +R PACKAGE INSTALLATION 47 / 238: DelayedArray ================ @@ -2647,21 +2912,21 @@ Content type 'application/x-gzip' length 579175 bytes (565 KB) ================================================== downloaded 565 KB -foundpkgs: MatrixGenerics, DelayedArray, /tmp/RtmpOLRHw5/downloaded_packages/MatrixGenerics_1.2.1.tar.gz, /tmp/RtmpOLRHw5/downloaded_packages/DelayedArray_0.16.3.tar.gz -files: /tmp/RtmpOLRHw5/downloaded_packages/MatrixGenerics_1.2.1.tar.gz, - /tmp/RtmpOLRHw5/downloaded_packages/DelayedArray_0.16.3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpOLRHw5/downloaded_packages/MatrixGenerics_1.2.1.tar.gz'' -2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpOLRHw5/downloaded_packages/DelayedArray_0.16.3.tar.gz'' +foundpkgs: MatrixGenerics, DelayedArray, /tmp/Rtmpock6Wg/downloaded_packages/MatrixGenerics_1.2.1.tar.gz, /tmp/Rtmpock6Wg/downloaded_packages/DelayedArray_0.16.3.tar.gz +files: /tmp/Rtmpock6Wg/downloaded_packages/MatrixGenerics_1.2.1.tar.gz, + /tmp/Rtmpock6Wg/downloaded_packages/DelayedArray_0.16.3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpock6Wg/downloaded_packages/MatrixGenerics_1.2.1.tar.gz'' +2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpock6Wg/downloaded_packages/DelayedArray_0.16.3.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpOLRHw5/downloaded_packages’ + ‘/tmp/Rtmpock6Wg/downloaded_packages’ ================ -R PACKAGE INSTALLATION 48 / 240: desc +R PACKAGE INSTALLATION 48 / 238: desc ================ @@ -2675,26 +2940,26 @@ downloaded 288 KB The downloaded source packages are in - ‘/tmp/RtmpD0NvH9/downloaded_packages’ + ‘/tmp/RtmpVGdE0T/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/desc_1.4.0.tar.gz' Content type 'application/x-gzip' length 295610 bytes (288 KB) ================================================== downloaded 288 KB -foundpkgs: desc, /tmp/RtmpD0NvH9/downloaded_packages/desc_1.4.0.tar.gz -files: /tmp/RtmpD0NvH9/downloaded_packages/desc_1.4.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpD0NvH9/downloaded_packages/desc_1.4.0.tar.gz'' +foundpkgs: desc, /tmp/RtmpVGdE0T/downloaded_packages/desc_1.4.0.tar.gz +files: /tmp/RtmpVGdE0T/downloaded_packages/desc_1.4.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpVGdE0T/downloaded_packages/desc_1.4.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpD0NvH9/downloaded_packages’ + ‘/tmp/RtmpVGdE0T/downloaded_packages’ ================ -R PACKAGE INSTALLATION 49 / 240: DESeq2 +R PACKAGE INSTALLATION 49 / 238: DESeq2 ================ @@ -2757,35 +3022,35 @@ Content type 'application/x-gzip' length 2067936 bytes (2.0 MB) ================================================== downloaded 2.0 MB -foundpkgs: RCurl, GenomeInfoDbData, GenomeInfoDb, GenomicRanges, SummarizedExperiment, genefilter, locfit, geneplotter, DESeq2, /tmp/RtmpW4NSpG/downloaded_packages/RCurl_1.98-1.5.tar.gz, /tmp/RtmpW4NSpG/downloaded_packages/GenomeInfoDbData_1.2.4.tar.gz, /tmp/RtmpW4NSpG/downloaded_packages/GenomeInfoDb_1.26.7.tar.gz, /tmp/RtmpW4NSpG/downloaded_packages/GenomicRanges_1.42.0.tar.gz, /tmp/RtmpW4NSpG/downloaded_packages/SummarizedExperiment_1.20.0.tar.gz, /tmp/RtmpW4NSpG/downloaded_packages/genefilter_1.72.1.tar.gz, /tmp/RtmpW4NSpG/downloaded_packages/locfit_1.5-9.4.tar.gz, /tmp/RtmpW4NSpG/downloaded_packages/geneplotter_1.68.0.tar.gz, /tmp/RtmpW4NSpG/downloaded_packages/DESeq2_1.30.1.tar.gz -files: /tmp/RtmpW4NSpG/downloaded_packages/RCurl_1.98-1.5.tar.gz, - /tmp/RtmpW4NSpG/downloaded_packages/GenomeInfoDbData_1.2.4.tar.gz, - /tmp/RtmpW4NSpG/downloaded_packages/GenomeInfoDb_1.26.7.tar.gz, - /tmp/RtmpW4NSpG/downloaded_packages/GenomicRanges_1.42.0.tar.gz, - /tmp/RtmpW4NSpG/downloaded_packages/SummarizedExperiment_1.20.0.tar.gz, - /tmp/RtmpW4NSpG/downloaded_packages/genefilter_1.72.1.tar.gz, - /tmp/RtmpW4NSpG/downloaded_packages/locfit_1.5-9.4.tar.gz, - /tmp/RtmpW4NSpG/downloaded_packages/geneplotter_1.68.0.tar.gz, - /tmp/RtmpW4NSpG/downloaded_packages/DESeq2_1.30.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpW4NSpG/downloaded_packages/RCurl_1.98-1.5.tar.gz'' -2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpW4NSpG/downloaded_packages/GenomeInfoDbData_1.2.4.tar.gz'' -3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpW4NSpG/downloaded_packages/genefilter_1.72.1.tar.gz'' -4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpW4NSpG/downloaded_packages/locfit_1.5-9.4.tar.gz'' -5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpW4NSpG/downloaded_packages/geneplotter_1.68.0.tar.gz'' -6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpW4NSpG/downloaded_packages/GenomeInfoDb_1.26.7.tar.gz'' -7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpW4NSpG/downloaded_packages/GenomicRanges_1.42.0.tar.gz'' -8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpW4NSpG/downloaded_packages/SummarizedExperiment_1.20.0.tar.gz'' -9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpW4NSpG/downloaded_packages/DESeq2_1.30.1.tar.gz'' +foundpkgs: RCurl, GenomeInfoDbData, GenomeInfoDb, GenomicRanges, SummarizedExperiment, genefilter, locfit, geneplotter, DESeq2, /tmp/RtmpmEwwiz/downloaded_packages/RCurl_1.98-1.5.tar.gz, /tmp/RtmpmEwwiz/downloaded_packages/GenomeInfoDbData_1.2.4.tar.gz, /tmp/RtmpmEwwiz/downloaded_packages/GenomeInfoDb_1.26.7.tar.gz, /tmp/RtmpmEwwiz/downloaded_packages/GenomicRanges_1.42.0.tar.gz, /tmp/RtmpmEwwiz/downloaded_packages/SummarizedExperiment_1.20.0.tar.gz, /tmp/RtmpmEwwiz/downloaded_packages/genefilter_1.72.1.tar.gz, /tmp/RtmpmEwwiz/downloaded_packages/locfit_1.5-9.4.tar.gz, /tmp/RtmpmEwwiz/downloaded_packages/geneplotter_1.68.0.tar.gz, /tmp/RtmpmEwwiz/downloaded_packages/DESeq2_1.30.1.tar.gz +files: /tmp/RtmpmEwwiz/downloaded_packages/RCurl_1.98-1.5.tar.gz, + /tmp/RtmpmEwwiz/downloaded_packages/GenomeInfoDbData_1.2.4.tar.gz, + /tmp/RtmpmEwwiz/downloaded_packages/GenomeInfoDb_1.26.7.tar.gz, + /tmp/RtmpmEwwiz/downloaded_packages/GenomicRanges_1.42.0.tar.gz, + /tmp/RtmpmEwwiz/downloaded_packages/SummarizedExperiment_1.20.0.tar.gz, + /tmp/RtmpmEwwiz/downloaded_packages/genefilter_1.72.1.tar.gz, + /tmp/RtmpmEwwiz/downloaded_packages/locfit_1.5-9.4.tar.gz, + /tmp/RtmpmEwwiz/downloaded_packages/geneplotter_1.68.0.tar.gz, + /tmp/RtmpmEwwiz/downloaded_packages/DESeq2_1.30.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmEwwiz/downloaded_packages/RCurl_1.98-1.5.tar.gz'' +2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmEwwiz/downloaded_packages/GenomeInfoDbData_1.2.4.tar.gz'' +3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmEwwiz/downloaded_packages/genefilter_1.72.1.tar.gz'' +4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmEwwiz/downloaded_packages/locfit_1.5-9.4.tar.gz'' +5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmEwwiz/downloaded_packages/geneplotter_1.68.0.tar.gz'' +6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmEwwiz/downloaded_packages/GenomeInfoDb_1.26.7.tar.gz'' +7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmEwwiz/downloaded_packages/GenomicRanges_1.42.0.tar.gz'' +8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmEwwiz/downloaded_packages/SummarizedExperiment_1.20.0.tar.gz'' +9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmEwwiz/downloaded_packages/DESeq2_1.30.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpW4NSpG/downloaded_packages’ + ‘/tmp/RtmpmEwwiz/downloaded_packages’ ================ -R PACKAGE INSTALLATION 50 / 240: diffobj +R PACKAGE INSTALLATION 50 / 238: diffobj ================ @@ -2799,26 +3064,26 @@ downloaded 468 KB The downloaded source packages are in - ‘/tmp/RtmpjAc5c8/downloaded_packages’ + ‘/tmp/RtmpPRYWIU/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/diffobj_0.3.5.tar.gz' Content type 'application/x-gzip' length 479276 bytes (468 KB) ================================================== downloaded 468 KB -foundpkgs: diffobj, /tmp/RtmpjAc5c8/downloaded_packages/diffobj_0.3.5.tar.gz -files: /tmp/RtmpjAc5c8/downloaded_packages/diffobj_0.3.5.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpjAc5c8/downloaded_packages/diffobj_0.3.5.tar.gz'' +foundpkgs: diffobj, /tmp/RtmpPRYWIU/downloaded_packages/diffobj_0.3.5.tar.gz +files: /tmp/RtmpPRYWIU/downloaded_packages/diffobj_0.3.5.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpPRYWIU/downloaded_packages/diffobj_0.3.5.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpjAc5c8/downloaded_packages’ + ‘/tmp/RtmpPRYWIU/downloaded_packages’ ================ -R PACKAGE INSTALLATION 51 / 240: digest +R PACKAGE INSTALLATION 51 / 238: digest ================ @@ -2832,26 +3097,26 @@ downloaded 158 KB The downloaded source packages are in - ‘/tmp/RtmpoevYXC/downloaded_packages’ + ‘/tmp/RtmpN36AyM/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/digest_0.6.29.tar.gz' Content type 'application/x-gzip' length 162775 bytes (158 KB) ================================================== downloaded 158 KB -foundpkgs: digest, /tmp/RtmpoevYXC/downloaded_packages/digest_0.6.29.tar.gz -files: /tmp/RtmpoevYXC/downloaded_packages/digest_0.6.29.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpoevYXC/downloaded_packages/digest_0.6.29.tar.gz'' +foundpkgs: digest, /tmp/RtmpN36AyM/downloaded_packages/digest_0.6.29.tar.gz +files: /tmp/RtmpN36AyM/downloaded_packages/digest_0.6.29.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpN36AyM/downloaded_packages/digest_0.6.29.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpoevYXC/downloaded_packages’ + ‘/tmp/RtmpN36AyM/downloaded_packages’ ================ -R PACKAGE INSTALLATION 52 / 240: DNAcopy +R PACKAGE INSTALLATION 52 / 238: DNAcopy ================ @@ -2873,7 +3138,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 53 / 240: dplyr +R PACKAGE INSTALLATION 53 / 238: dplyr ================ @@ -2887,26 +3152,26 @@ downloaded 832 KB The downloaded source packages are in - ‘/tmp/Rtmpgr06YU/downloaded_packages’ + ‘/tmp/Rtmpap61DR/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/dplyr_1.0.7.tar.gz' Content type 'application/x-gzip' length 852103 bytes (832 KB) ================================================== downloaded 832 KB -foundpkgs: dplyr, /tmp/Rtmpgr06YU/downloaded_packages/dplyr_1.0.7.tar.gz -files: /tmp/Rtmpgr06YU/downloaded_packages/dplyr_1.0.7.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpgr06YU/downloaded_packages/dplyr_1.0.7.tar.gz'' +foundpkgs: dplyr, /tmp/Rtmpap61DR/downloaded_packages/dplyr_1.0.7.tar.gz +files: /tmp/Rtmpap61DR/downloaded_packages/dplyr_1.0.7.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpap61DR/downloaded_packages/dplyr_1.0.7.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpgr06YU/downloaded_packages’ + ‘/tmp/Rtmpap61DR/downloaded_packages’ ================ -R PACKAGE INSTALLATION 54 / 240: DT +R PACKAGE INSTALLATION 54 / 238: DT ================ @@ -2940,26 +3205,26 @@ downloaded 1.4 MB The downloaded source packages are in - ‘/tmp/RtmpbfZsuS/downloaded_packages’ + ‘/tmp/RtmpFDyT21/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/DT_0.20.tar.gz' Content type 'application/x-gzip' length 1509840 bytes (1.4 MB) ================================================== downloaded 1.4 MB -foundpkgs: DT, /tmp/RtmpbfZsuS/downloaded_packages/DT_0.20.tar.gz -files: /tmp/RtmpbfZsuS/downloaded_packages/DT_0.20.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpbfZsuS/downloaded_packages/DT_0.20.tar.gz'' +foundpkgs: DT, /tmp/RtmpFDyT21/downloaded_packages/DT_0.20.tar.gz +files: /tmp/RtmpFDyT21/downloaded_packages/DT_0.20.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpFDyT21/downloaded_packages/DT_0.20.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpbfZsuS/downloaded_packages’ + ‘/tmp/RtmpFDyT21/downloaded_packages’ ================ -R PACKAGE INSTALLATION 55 / 240: dtplyr +R PACKAGE INSTALLATION 55 / 238: dtplyr ================ @@ -2973,26 +3238,26 @@ downloaded 280 KB The downloaded source packages are in - ‘/tmp/RtmpLuMBtx/downloaded_packages’ + ‘/tmp/RtmpwynRRe/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/dtplyr_1.2.0.tar.gz' Content type 'application/x-gzip' length 287269 bytes (280 KB) ================================================== downloaded 280 KB -foundpkgs: dtplyr, /tmp/RtmpLuMBtx/downloaded_packages/dtplyr_1.2.0.tar.gz -files: /tmp/RtmpLuMBtx/downloaded_packages/dtplyr_1.2.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLuMBtx/downloaded_packages/dtplyr_1.2.0.tar.gz'' +foundpkgs: dtplyr, /tmp/RtmpwynRRe/downloaded_packages/dtplyr_1.2.0.tar.gz +files: /tmp/RtmpwynRRe/downloaded_packages/dtplyr_1.2.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpwynRRe/downloaded_packages/dtplyr_1.2.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpLuMBtx/downloaded_packages’ + ‘/tmp/RtmpwynRRe/downloaded_packages’ ================ -R PACKAGE INSTALLATION 56 / 240: edgeR +R PACKAGE INSTALLATION 56 / 238: edgeR ================ @@ -3013,19 +3278,19 @@ Content type 'application/x-gzip' length 1614102 bytes (1.5 MB) ================================================== downloaded 1.5 MB -foundpkgs: edgeR, /tmp/RtmpKKKG8M/downloaded_packages/edgeR_3.32.1.tar.gz -files: /tmp/RtmpKKKG8M/downloaded_packages/edgeR_3.32.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpKKKG8M/downloaded_packages/edgeR_3.32.1.tar.gz'' +foundpkgs: edgeR, /tmp/RtmpF3qzF8/downloaded_packages/edgeR_3.32.1.tar.gz +files: /tmp/RtmpF3qzF8/downloaded_packages/edgeR_3.32.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpF3qzF8/downloaded_packages/edgeR_3.32.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpKKKG8M/downloaded_packages’ + ‘/tmp/RtmpF3qzF8/downloaded_packages’ ================ -R PACKAGE INSTALLATION 57 / 240: ellipsis +R PACKAGE INSTALLATION 57 / 238: ellipsis ================ @@ -3039,26 +3304,26 @@ downloaded 8066 bytes The downloaded source packages are in - ‘/tmp/RtmpAWciac/downloaded_packages’ + ‘/tmp/RtmpUDPBbs/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/ellipsis_0.3.2.tar.gz' Content type 'application/x-gzip' length 8066 bytes ================================================== downloaded 8066 bytes -foundpkgs: ellipsis, /tmp/RtmpAWciac/downloaded_packages/ellipsis_0.3.2.tar.gz -files: /tmp/RtmpAWciac/downloaded_packages/ellipsis_0.3.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpAWciac/downloaded_packages/ellipsis_0.3.2.tar.gz'' +foundpkgs: ellipsis, /tmp/RtmpUDPBbs/downloaded_packages/ellipsis_0.3.2.tar.gz +files: /tmp/RtmpUDPBbs/downloaded_packages/ellipsis_0.3.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpUDPBbs/downloaded_packages/ellipsis_0.3.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpAWciac/downloaded_packages’ + ‘/tmp/RtmpUDPBbs/downloaded_packages’ ================ -R PACKAGE INSTALLATION 58 / 240: emmeans +R PACKAGE INSTALLATION 58 / 238: emmeans ================ @@ -3082,26 +3347,26 @@ downloaded 1.3 MB The downloaded source packages are in - ‘/tmp/RtmpmapOAJ/downloaded_packages’ + ‘/tmp/Rtmp5ignSs/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/emmeans_1.7.1-1.tar.gz' Content type 'application/x-gzip' length 1350443 bytes (1.3 MB) ================================================== downloaded 1.3 MB -foundpkgs: emmeans, /tmp/RtmpmapOAJ/downloaded_packages/emmeans_1.7.1-1.tar.gz -files: /tmp/RtmpmapOAJ/downloaded_packages/emmeans_1.7.1-1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmapOAJ/downloaded_packages/emmeans_1.7.1-1.tar.gz'' +foundpkgs: emmeans, /tmp/Rtmp5ignSs/downloaded_packages/emmeans_1.7.1-1.tar.gz +files: /tmp/Rtmp5ignSs/downloaded_packages/emmeans_1.7.1-1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp5ignSs/downloaded_packages/emmeans_1.7.1-1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpmapOAJ/downloaded_packages’ + ‘/tmp/Rtmp5ignSs/downloaded_packages’ ================ -R PACKAGE INSTALLATION 59 / 240: estimability +R PACKAGE INSTALLATION 59 / 238: estimability ================ @@ -3115,26 +3380,26 @@ downloaded 9481 bytes The downloaded source packages are in - ‘/tmp/RtmpsQ88JU/downloaded_packages’ + ‘/tmp/RtmpTO2mcK/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/estimability_1.3.tar.gz' Content type 'application/x-gzip' length 9481 bytes ================================================== downloaded 9481 bytes -foundpkgs: estimability, /tmp/RtmpsQ88JU/downloaded_packages/estimability_1.3.tar.gz -files: /tmp/RtmpsQ88JU/downloaded_packages/estimability_1.3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsQ88JU/downloaded_packages/estimability_1.3.tar.gz'' +foundpkgs: estimability, /tmp/RtmpTO2mcK/downloaded_packages/estimability_1.3.tar.gz +files: /tmp/RtmpTO2mcK/downloaded_packages/estimability_1.3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTO2mcK/downloaded_packages/estimability_1.3.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpsQ88JU/downloaded_packages’ + ‘/tmp/RtmpTO2mcK/downloaded_packages’ ================ -R PACKAGE INSTALLATION 60 / 240: evaluate +R PACKAGE INSTALLATION 60 / 238: evaluate ================ @@ -3148,26 +3413,26 @@ downloaded 23 KB The downloaded source packages are in - ‘/tmp/RtmpmXJqL3/downloaded_packages’ + ‘/tmp/Rtmpf5oAWl/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/evaluate_0.14.tar.gz' Content type 'application/x-gzip' length 24206 bytes (23 KB) ================================================== downloaded 23 KB -foundpkgs: evaluate, /tmp/RtmpmXJqL3/downloaded_packages/evaluate_0.14.tar.gz -files: /tmp/RtmpmXJqL3/downloaded_packages/evaluate_0.14.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmXJqL3/downloaded_packages/evaluate_0.14.tar.gz'' +foundpkgs: evaluate, /tmp/Rtmpf5oAWl/downloaded_packages/evaluate_0.14.tar.gz +files: /tmp/Rtmpf5oAWl/downloaded_packages/evaluate_0.14.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpf5oAWl/downloaded_packages/evaluate_0.14.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpmXJqL3/downloaded_packages’ + ‘/tmp/Rtmpf5oAWl/downloaded_packages’ ================ -R PACKAGE INSTALLATION 61 / 240: ExPosition +R PACKAGE INSTALLATION 61 / 238: ExPosition ================ @@ -3186,26 +3451,26 @@ downloaded 61 KB The downloaded source packages are in - ‘/tmp/RtmpmvrbTj/downloaded_packages’ + ‘/tmp/RtmpQRNYJk/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/ExPosition_2.8.23.tar.gz' Content type 'application/x-gzip' length 63329 bytes (61 KB) ================================================== downloaded 61 KB -foundpkgs: ExPosition, /tmp/RtmpmvrbTj/downloaded_packages/ExPosition_2.8.23.tar.gz -files: /tmp/RtmpmvrbTj/downloaded_packages/ExPosition_2.8.23.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmvrbTj/downloaded_packages/ExPosition_2.8.23.tar.gz'' +foundpkgs: ExPosition, /tmp/RtmpQRNYJk/downloaded_packages/ExPosition_2.8.23.tar.gz +files: /tmp/RtmpQRNYJk/downloaded_packages/ExPosition_2.8.23.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQRNYJk/downloaded_packages/ExPosition_2.8.23.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpmvrbTj/downloaded_packages’ + ‘/tmp/RtmpQRNYJk/downloaded_packages’ ================ -R PACKAGE INSTALLATION 62 / 240: fansi +R PACKAGE INSTALLATION 62 / 238: fansi ================ @@ -3219,26 +3484,26 @@ downloaded 294 KB The downloaded source packages are in - ‘/tmp/Rtmpk0tAT2/downloaded_packages’ + ‘/tmp/Rtmp8Ooa4g/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/fansi_0.5.0.tar.gz' Content type 'application/x-gzip' length 301724 bytes (294 KB) ================================================== downloaded 294 KB -foundpkgs: fansi, /tmp/Rtmpk0tAT2/downloaded_packages/fansi_0.5.0.tar.gz -files: /tmp/Rtmpk0tAT2/downloaded_packages/fansi_0.5.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpk0tAT2/downloaded_packages/fansi_0.5.0.tar.gz'' +foundpkgs: fansi, /tmp/Rtmp8Ooa4g/downloaded_packages/fansi_0.5.0.tar.gz +files: /tmp/Rtmp8Ooa4g/downloaded_packages/fansi_0.5.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8Ooa4g/downloaded_packages/fansi_0.5.0.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpk0tAT2/downloaded_packages’ + ‘/tmp/Rtmp8Ooa4g/downloaded_packages’ ================ -R PACKAGE INSTALLATION 63 / 240: farver +R PACKAGE INSTALLATION 63 / 238: farver ================ @@ -3252,26 +3517,26 @@ downloaded 1.2 MB The downloaded source packages are in - ‘/tmp/RtmpqiBdXX/downloaded_packages’ + ‘/tmp/RtmpXENaN2/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/farver_2.1.0.tar.gz' Content type 'application/x-gzip' length 1281864 bytes (1.2 MB) ================================================== downloaded 1.2 MB -foundpkgs: farver, /tmp/RtmpqiBdXX/downloaded_packages/farver_2.1.0.tar.gz -files: /tmp/RtmpqiBdXX/downloaded_packages/farver_2.1.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpqiBdXX/downloaded_packages/farver_2.1.0.tar.gz'' +foundpkgs: farver, /tmp/RtmpXENaN2/downloaded_packages/farver_2.1.0.tar.gz +files: /tmp/RtmpXENaN2/downloaded_packages/farver_2.1.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXENaN2/downloaded_packages/farver_2.1.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpqiBdXX/downloaded_packages’ + ‘/tmp/RtmpXENaN2/downloaded_packages’ ================ -R PACKAGE INSTALLATION 64 / 240: fastmap +R PACKAGE INSTALLATION 64 / 238: fastmap ================ @@ -3285,26 +3550,26 @@ downloaded 43 KB The downloaded source packages are in - ‘/tmp/RtmpJZXkh6/downloaded_packages’ + ‘/tmp/RtmpiWykuc/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/fastmap_1.1.0.tar.gz' Content type 'application/x-gzip' length 44277 bytes (43 KB) ================================================== downloaded 43 KB -foundpkgs: fastmap, /tmp/RtmpJZXkh6/downloaded_packages/fastmap_1.1.0.tar.gz -files: /tmp/RtmpJZXkh6/downloaded_packages/fastmap_1.1.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpJZXkh6/downloaded_packages/fastmap_1.1.0.tar.gz'' +foundpkgs: fastmap, /tmp/RtmpiWykuc/downloaded_packages/fastmap_1.1.0.tar.gz +files: /tmp/RtmpiWykuc/downloaded_packages/fastmap_1.1.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpiWykuc/downloaded_packages/fastmap_1.1.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpJZXkh6/downloaded_packages’ + ‘/tmp/RtmpiWykuc/downloaded_packages’ ================ -R PACKAGE INSTALLATION 65 / 240: forcats +R PACKAGE INSTALLATION 65 / 238: forcats ================ @@ -3318,26 +3583,26 @@ downloaded 252 KB The downloaded source packages are in - ‘/tmp/RtmpV4YwfL/downloaded_packages’ + ‘/tmp/RtmpPr5xCy/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/forcats_0.5.1.tar.gz' Content type 'application/x-gzip' length 258301 bytes (252 KB) ================================================== downloaded 252 KB -foundpkgs: forcats, /tmp/RtmpV4YwfL/downloaded_packages/forcats_0.5.1.tar.gz -files: /tmp/RtmpV4YwfL/downloaded_packages/forcats_0.5.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpV4YwfL/downloaded_packages/forcats_0.5.1.tar.gz'' +foundpkgs: forcats, /tmp/RtmpPr5xCy/downloaded_packages/forcats_0.5.1.tar.gz +files: /tmp/RtmpPr5xCy/downloaded_packages/forcats_0.5.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpPr5xCy/downloaded_packages/forcats_0.5.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpV4YwfL/downloaded_packages’ + ‘/tmp/RtmpPr5xCy/downloaded_packages’ ================ -R PACKAGE INSTALLATION 66 / 240: formatR +R PACKAGE INSTALLATION 66 / 238: formatR ================ @@ -3351,26 +3616,26 @@ downloaded 92 KB The downloaded source packages are in - ‘/tmp/RtmpfK1oFF/downloaded_packages’ + ‘/tmp/RtmpdXf1Xd/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/formatR_1.11.tar.gz' Content type 'application/x-gzip' length 95158 bytes (92 KB) ================================================== downloaded 92 KB -foundpkgs: formatR, /tmp/RtmpfK1oFF/downloaded_packages/formatR_1.11.tar.gz -files: /tmp/RtmpfK1oFF/downloaded_packages/formatR_1.11.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpfK1oFF/downloaded_packages/formatR_1.11.tar.gz'' +foundpkgs: formatR, /tmp/RtmpdXf1Xd/downloaded_packages/formatR_1.11.tar.gz +files: /tmp/RtmpdXf1Xd/downloaded_packages/formatR_1.11.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdXf1Xd/downloaded_packages/formatR_1.11.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpfK1oFF/downloaded_packages’ + ‘/tmp/RtmpdXf1Xd/downloaded_packages’ ================ -R PACKAGE INSTALLATION 67 / 240: fs +R PACKAGE INSTALLATION 67 / 238: fs ================ @@ -3384,26 +3649,26 @@ downloaded 775 KB The downloaded source packages are in - ‘/tmp/RtmpOlzJFE/downloaded_packages’ + ‘/tmp/RtmphTeQ13/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/fs_1.5.2.tar.gz' Content type 'application/x-gzip' length 793627 bytes (775 KB) ================================================== downloaded 775 KB -foundpkgs: fs, /tmp/RtmpOlzJFE/downloaded_packages/fs_1.5.2.tar.gz -files: /tmp/RtmpOlzJFE/downloaded_packages/fs_1.5.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpOlzJFE/downloaded_packages/fs_1.5.2.tar.gz'' +foundpkgs: fs, /tmp/RtmphTeQ13/downloaded_packages/fs_1.5.2.tar.gz +files: /tmp/RtmphTeQ13/downloaded_packages/fs_1.5.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmphTeQ13/downloaded_packages/fs_1.5.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpOlzJFE/downloaded_packages’ + ‘/tmp/RtmphTeQ13/downloaded_packages’ ================ -R PACKAGE INSTALLATION 68 / 240: futile.logger +R PACKAGE INSTALLATION 68 / 238: futile.logger ================ @@ -3417,26 +3682,26 @@ downloaded 17 KB The downloaded source packages are in - ‘/tmp/RtmplBxh7n/downloaded_packages’ + ‘/tmp/RtmpCx228I/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/futile.logger_1.4.3.tar.gz' Content type 'application/x-gzip' length 17456 bytes (17 KB) ================================================== downloaded 17 KB -foundpkgs: futile.logger, /tmp/RtmplBxh7n/downloaded_packages/futile.logger_1.4.3.tar.gz -files: /tmp/RtmplBxh7n/downloaded_packages/futile.logger_1.4.3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmplBxh7n/downloaded_packages/futile.logger_1.4.3.tar.gz'' +foundpkgs: futile.logger, /tmp/RtmpCx228I/downloaded_packages/futile.logger_1.4.3.tar.gz +files: /tmp/RtmpCx228I/downloaded_packages/futile.logger_1.4.3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpCx228I/downloaded_packages/futile.logger_1.4.3.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmplBxh7n/downloaded_packages’ + ‘/tmp/RtmpCx228I/downloaded_packages’ ================ -R PACKAGE INSTALLATION 69 / 240: futile.options +R PACKAGE INSTALLATION 69 / 238: futile.options ================ @@ -3450,26 +3715,26 @@ downloaded 3919 bytes The downloaded source packages are in - ‘/tmp/RtmpNNEiz0/downloaded_packages’ + ‘/tmp/RtmpFUpdag/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/futile.options_1.0.1.tar.gz' Content type 'application/x-gzip' length 3919 bytes ================================================== downloaded 3919 bytes -foundpkgs: futile.options, /tmp/RtmpNNEiz0/downloaded_packages/futile.options_1.0.1.tar.gz -files: /tmp/RtmpNNEiz0/downloaded_packages/futile.options_1.0.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpNNEiz0/downloaded_packages/futile.options_1.0.1.tar.gz'' +foundpkgs: futile.options, /tmp/RtmpFUpdag/downloaded_packages/futile.options_1.0.1.tar.gz +files: /tmp/RtmpFUpdag/downloaded_packages/futile.options_1.0.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpFUpdag/downloaded_packages/futile.options_1.0.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpNNEiz0/downloaded_packages’ + ‘/tmp/RtmpFUpdag/downloaded_packages’ ================ -R PACKAGE INSTALLATION 70 / 240: future +R PACKAGE INSTALLATION 70 / 238: future ================ @@ -3483,26 +3748,26 @@ downloaded 342 KB The downloaded source packages are in - ‘/tmp/RtmpIdFMb8/downloaded_packages’ + ‘/tmp/RtmpdLQrlo/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/future_1.23.0.tar.gz' Content type 'application/x-gzip' length 350228 bytes (342 KB) ================================================== downloaded 342 KB -foundpkgs: future, /tmp/RtmpIdFMb8/downloaded_packages/future_1.23.0.tar.gz -files: /tmp/RtmpIdFMb8/downloaded_packages/future_1.23.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpIdFMb8/downloaded_packages/future_1.23.0.tar.gz'' +foundpkgs: future, /tmp/RtmpdLQrlo/downloaded_packages/future_1.23.0.tar.gz +files: /tmp/RtmpdLQrlo/downloaded_packages/future_1.23.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdLQrlo/downloaded_packages/future_1.23.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpIdFMb8/downloaded_packages’ + ‘/tmp/RtmpdLQrlo/downloaded_packages’ ================ -R PACKAGE INSTALLATION 71 / 240: future.apply +R PACKAGE INSTALLATION 71 / 238: future.apply ================ @@ -3516,26 +3781,26 @@ downloaded 62 KB The downloaded source packages are in - ‘/tmp/RtmpUjiGam/downloaded_packages’ + ‘/tmp/RtmpslAPFS/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/future.apply_1.8.1.tar.gz' Content type 'application/x-gzip' length 63654 bytes (62 KB) ================================================== downloaded 62 KB -foundpkgs: future.apply, /tmp/RtmpUjiGam/downloaded_packages/future.apply_1.8.1.tar.gz -files: /tmp/RtmpUjiGam/downloaded_packages/future.apply_1.8.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpUjiGam/downloaded_packages/future.apply_1.8.1.tar.gz'' +foundpkgs: future.apply, /tmp/RtmpslAPFS/downloaded_packages/future.apply_1.8.1.tar.gz +files: /tmp/RtmpslAPFS/downloaded_packages/future.apply_1.8.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpslAPFS/downloaded_packages/future.apply_1.8.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpUjiGam/downloaded_packages’ + ‘/tmp/RtmpslAPFS/downloaded_packages’ ================ -R PACKAGE INSTALLATION 72 / 240: gargle +R PACKAGE INSTALLATION 72 / 238: gargle ================ @@ -3549,26 +3814,26 @@ downloaded 306 KB The downloaded source packages are in - ‘/tmp/RtmpsUk8O7/downloaded_packages’ + ‘/tmp/Rtmprwwd1a/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/gargle_1.2.0.tar.gz' Content type 'application/x-gzip' length 313418 bytes (306 KB) ================================================== downloaded 306 KB -foundpkgs: gargle, /tmp/RtmpsUk8O7/downloaded_packages/gargle_1.2.0.tar.gz -files: /tmp/RtmpsUk8O7/downloaded_packages/gargle_1.2.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsUk8O7/downloaded_packages/gargle_1.2.0.tar.gz'' +foundpkgs: gargle, /tmp/Rtmprwwd1a/downloaded_packages/gargle_1.2.0.tar.gz +files: /tmp/Rtmprwwd1a/downloaded_packages/gargle_1.2.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmprwwd1a/downloaded_packages/gargle_1.2.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpsUk8O7/downloaded_packages’ + ‘/tmp/Rtmprwwd1a/downloaded_packages’ ================ -R PACKAGE INSTALLATION 73 / 240: genefilter +R PACKAGE INSTALLATION 73 / 238: genefilter ================ @@ -3590,7 +3855,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 74 / 240: geneplotter +R PACKAGE INSTALLATION 74 / 238: geneplotter ================ @@ -3612,7 +3877,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 75 / 240: generics +R PACKAGE INSTALLATION 75 / 238: generics ================ @@ -3626,26 +3891,26 @@ downloaded 160 KB The downloaded source packages are in - ‘/tmp/RtmppGNQzK/downloaded_packages’ + ‘/tmp/Rtmp1OkU2c/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/generics_0.1.1.tar.gz' Content type 'application/x-gzip' length 164711 bytes (160 KB) ================================================== downloaded 160 KB -foundpkgs: generics, /tmp/RtmppGNQzK/downloaded_packages/generics_0.1.1.tar.gz -files: /tmp/RtmppGNQzK/downloaded_packages/generics_0.1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmppGNQzK/downloaded_packages/generics_0.1.1.tar.gz'' +foundpkgs: generics, /tmp/Rtmp1OkU2c/downloaded_packages/generics_0.1.1.tar.gz +files: /tmp/Rtmp1OkU2c/downloaded_packages/generics_0.1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1OkU2c/downloaded_packages/generics_0.1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmppGNQzK/downloaded_packages’ + ‘/tmp/Rtmp1OkU2c/downloaded_packages’ ================ -R PACKAGE INSTALLATION 76 / 240: GenomeInfoDb +R PACKAGE INSTALLATION 76 / 238: GenomeInfoDb ================ @@ -3667,7 +3932,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 77 / 240: GenomeInfoDbData +R PACKAGE INSTALLATION 77 / 238: GenomeInfoDbData ================ @@ -3689,7 +3954,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 78 / 240: GenomicRanges +R PACKAGE INSTALLATION 78 / 238: GenomicRanges ================ @@ -3711,7 +3976,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 79 / 240: gert +R PACKAGE INSTALLATION 79 / 238: gert ================ @@ -3725,26 +3990,26 @@ downloaded 65 KB The downloaded source packages are in - ‘/tmp/RtmpQjwSdr/downloaded_packages’ + ‘/tmp/RtmptEyBfO/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/gert_1.4.3.tar.gz' Content type 'application/x-gzip' length 67320 bytes (65 KB) ================================================== downloaded 65 KB -foundpkgs: gert, /tmp/RtmpQjwSdr/downloaded_packages/gert_1.4.3.tar.gz -files: /tmp/RtmpQjwSdr/downloaded_packages/gert_1.4.3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQjwSdr/downloaded_packages/gert_1.4.3.tar.gz'' +foundpkgs: gert, /tmp/RtmptEyBfO/downloaded_packages/gert_1.4.3.tar.gz +files: /tmp/RtmptEyBfO/downloaded_packages/gert_1.4.3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmptEyBfO/downloaded_packages/gert_1.4.3.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpQjwSdr/downloaded_packages’ + ‘/tmp/RtmptEyBfO/downloaded_packages’ ================ -R PACKAGE INSTALLATION 80 / 240: GGally +R PACKAGE INSTALLATION 80 / 238: GGally ================ @@ -3773,26 +4038,26 @@ downloaded 1.4 MB The downloaded source packages are in - ‘/tmp/RtmpaIYXwD/downloaded_packages’ + ‘/tmp/RtmpRpQlpc/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/GGally_2.1.2.tar.gz' Content type 'application/x-gzip' length 1432522 bytes (1.4 MB) ================================================== downloaded 1.4 MB -foundpkgs: GGally, /tmp/RtmpaIYXwD/downloaded_packages/GGally_2.1.2.tar.gz -files: /tmp/RtmpaIYXwD/downloaded_packages/GGally_2.1.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpaIYXwD/downloaded_packages/GGally_2.1.2.tar.gz'' +foundpkgs: GGally, /tmp/RtmpRpQlpc/downloaded_packages/GGally_2.1.2.tar.gz +files: /tmp/RtmpRpQlpc/downloaded_packages/GGally_2.1.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpRpQlpc/downloaded_packages/GGally_2.1.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpaIYXwD/downloaded_packages’ + ‘/tmp/RtmpRpQlpc/downloaded_packages’ ================ -R PACKAGE INSTALLATION 81 / 240: ggdendro +R PACKAGE INSTALLATION 81 / 238: ggdendro ================ @@ -3806,26 +4071,26 @@ downloaded 99 KB The downloaded source packages are in - ‘/tmp/RtmpKILAw9/downloaded_packages’ + ‘/tmp/RtmpPfYq3x/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/ggdendro_0.1.22.tar.gz' Content type 'application/x-gzip' length 101435 bytes (99 KB) ================================================== downloaded 99 KB -foundpkgs: ggdendro, /tmp/RtmpKILAw9/downloaded_packages/ggdendro_0.1.22.tar.gz -files: /tmp/RtmpKILAw9/downloaded_packages/ggdendro_0.1.22.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpKILAw9/downloaded_packages/ggdendro_0.1.22.tar.gz'' +foundpkgs: ggdendro, /tmp/RtmpPfYq3x/downloaded_packages/ggdendro_0.1.22.tar.gz +files: /tmp/RtmpPfYq3x/downloaded_packages/ggdendro_0.1.22.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpPfYq3x/downloaded_packages/ggdendro_0.1.22.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpKILAw9/downloaded_packages’ + ‘/tmp/RtmpPfYq3x/downloaded_packages’ ================ -R PACKAGE INSTALLATION 82 / 240: ggrepel +R PACKAGE INSTALLATION 82 / 238: ggrepel ================ @@ -3839,26 +4104,26 @@ downloaded 265 KB The downloaded source packages are in - ‘/tmp/RtmpIn8xjZ/downloaded_packages’ + ‘/tmp/RtmpQzKPqL/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/ggrepel_0.9.1.tar.gz' Content type 'application/x-gzip' length 271371 bytes (265 KB) ================================================== downloaded 265 KB -foundpkgs: ggrepel, /tmp/RtmpIn8xjZ/downloaded_packages/ggrepel_0.9.1.tar.gz -files: /tmp/RtmpIn8xjZ/downloaded_packages/ggrepel_0.9.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpIn8xjZ/downloaded_packages/ggrepel_0.9.1.tar.gz'' +foundpkgs: ggrepel, /tmp/RtmpQzKPqL/downloaded_packages/ggrepel_0.9.1.tar.gz +files: /tmp/RtmpQzKPqL/downloaded_packages/ggrepel_0.9.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQzKPqL/downloaded_packages/ggrepel_0.9.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpIn8xjZ/downloaded_packages’ + ‘/tmp/RtmpQzKPqL/downloaded_packages’ ================ -R PACKAGE INSTALLATION 83 / 240: ggseqlogo +R PACKAGE INSTALLATION 83 / 238: ggseqlogo ================ @@ -3872,26 +4137,26 @@ downloaded 721 KB The downloaded source packages are in - ‘/tmp/RtmpMdf38x/downloaded_packages’ + ‘/tmp/Rtmp9kOqek/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/ggseqlogo_0.1.tar.gz' Content type 'application/x-gzip' length 738907 bytes (721 KB) ================================================== downloaded 721 KB -foundpkgs: ggseqlogo, /tmp/RtmpMdf38x/downloaded_packages/ggseqlogo_0.1.tar.gz -files: /tmp/RtmpMdf38x/downloaded_packages/ggseqlogo_0.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpMdf38x/downloaded_packages/ggseqlogo_0.1.tar.gz'' +foundpkgs: ggseqlogo, /tmp/Rtmp9kOqek/downloaded_packages/ggseqlogo_0.1.tar.gz +files: /tmp/Rtmp9kOqek/downloaded_packages/ggseqlogo_0.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp9kOqek/downloaded_packages/ggseqlogo_0.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpMdf38x/downloaded_packages’ + ‘/tmp/Rtmp9kOqek/downloaded_packages’ ================ -R PACKAGE INSTALLATION 84 / 240: gh +R PACKAGE INSTALLATION 84 / 238: gh ================ @@ -3905,26 +4170,26 @@ downloaded 44 KB The downloaded source packages are in - ‘/tmp/RtmpiBAHVM/downloaded_packages’ + ‘/tmp/RtmpounjXM/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/gh_1.3.0.tar.gz' Content type 'application/x-gzip' length 45619 bytes (44 KB) ================================================== downloaded 44 KB -foundpkgs: gh, /tmp/RtmpiBAHVM/downloaded_packages/gh_1.3.0.tar.gz -files: /tmp/RtmpiBAHVM/downloaded_packages/gh_1.3.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpiBAHVM/downloaded_packages/gh_1.3.0.tar.gz'' +foundpkgs: gh, /tmp/RtmpounjXM/downloaded_packages/gh_1.3.0.tar.gz +files: /tmp/RtmpounjXM/downloaded_packages/gh_1.3.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpounjXM/downloaded_packages/gh_1.3.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpiBAHVM/downloaded_packages’ + ‘/tmp/RtmpounjXM/downloaded_packages’ ================ -R PACKAGE INSTALLATION 85 / 240: gitcreds +R PACKAGE INSTALLATION 85 / 238: gitcreds ================ @@ -3938,26 +4203,26 @@ downloaded 60 KB The downloaded source packages are in - ‘/tmp/RtmpNVa4If/downloaded_packages’ + ‘/tmp/Rtmp0JGwS2/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/gitcreds_0.1.1.tar.gz' Content type 'application/x-gzip' length 61913 bytes (60 KB) ================================================== downloaded 60 KB -foundpkgs: gitcreds, /tmp/RtmpNVa4If/downloaded_packages/gitcreds_0.1.1.tar.gz -files: /tmp/RtmpNVa4If/downloaded_packages/gitcreds_0.1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpNVa4If/downloaded_packages/gitcreds_0.1.1.tar.gz'' +foundpkgs: gitcreds, /tmp/Rtmp0JGwS2/downloaded_packages/gitcreds_0.1.1.tar.gz +files: /tmp/Rtmp0JGwS2/downloaded_packages/gitcreds_0.1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp0JGwS2/downloaded_packages/gitcreds_0.1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpNVa4If/downloaded_packages’ + ‘/tmp/Rtmp0JGwS2/downloaded_packages’ ================ -R PACKAGE INSTALLATION 86 / 240: githubinstall +R PACKAGE INSTALLATION 86 / 238: githubinstall ================ @@ -3976,26 +4241,26 @@ downloaded 27 KB The downloaded source packages are in - ‘/tmp/Rtmpo8n4fF/downloaded_packages’ + ‘/tmp/Rtmpm64g2T/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/githubinstall_0.2.2.tar.gz' Content type 'application/x-gzip' length 27939 bytes (27 KB) ================================================== downloaded 27 KB -foundpkgs: githubinstall, /tmp/Rtmpo8n4fF/downloaded_packages/githubinstall_0.2.2.tar.gz -files: /tmp/Rtmpo8n4fF/downloaded_packages/githubinstall_0.2.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpo8n4fF/downloaded_packages/githubinstall_0.2.2.tar.gz'' +foundpkgs: githubinstall, /tmp/Rtmpm64g2T/downloaded_packages/githubinstall_0.2.2.tar.gz +files: /tmp/Rtmpm64g2T/downloaded_packages/githubinstall_0.2.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpm64g2T/downloaded_packages/githubinstall_0.2.2.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpo8n4fF/downloaded_packages’ + ‘/tmp/Rtmpm64g2T/downloaded_packages’ ================ -R PACKAGE INSTALLATION 87 / 240: globals +R PACKAGE INSTALLATION 87 / 238: globals ================ @@ -4009,26 +4274,26 @@ downloaded 30 KB The downloaded source packages are in - ‘/tmp/RtmpEmZBz1/downloaded_packages’ + ‘/tmp/Rtmp9e3IDY/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/globals_0.14.0.tar.gz' Content type 'application/x-gzip' length 30786 bytes (30 KB) ================================================== downloaded 30 KB -foundpkgs: globals, /tmp/RtmpEmZBz1/downloaded_packages/globals_0.14.0.tar.gz -files: /tmp/RtmpEmZBz1/downloaded_packages/globals_0.14.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpEmZBz1/downloaded_packages/globals_0.14.0.tar.gz'' +foundpkgs: globals, /tmp/Rtmp9e3IDY/downloaded_packages/globals_0.14.0.tar.gz +files: /tmp/Rtmp9e3IDY/downloaded_packages/globals_0.14.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp9e3IDY/downloaded_packages/globals_0.14.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpEmZBz1/downloaded_packages’ + ‘/tmp/Rtmp9e3IDY/downloaded_packages’ ================ -R PACKAGE INSTALLATION 88 / 240: glue +R PACKAGE INSTALLATION 88 / 238: glue ================ @@ -4042,26 +4307,26 @@ downloaded 107 KB The downloaded source packages are in - ‘/tmp/RtmpVE1Z9r/downloaded_packages’ + ‘/tmp/Rtmp26ZtYA/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/glue_1.6.0.tar.gz' Content type 'application/x-gzip' length 110320 bytes (107 KB) ================================================== downloaded 107 KB -foundpkgs: glue, /tmp/RtmpVE1Z9r/downloaded_packages/glue_1.6.0.tar.gz -files: /tmp/RtmpVE1Z9r/downloaded_packages/glue_1.6.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpVE1Z9r/downloaded_packages/glue_1.6.0.tar.gz'' +foundpkgs: glue, /tmp/Rtmp26ZtYA/downloaded_packages/glue_1.6.0.tar.gz +files: /tmp/Rtmp26ZtYA/downloaded_packages/glue_1.6.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp26ZtYA/downloaded_packages/glue_1.6.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpVE1Z9r/downloaded_packages’ + ‘/tmp/Rtmp26ZtYA/downloaded_packages’ ================ -R PACKAGE INSTALLATION 89 / 240: googledrive +R PACKAGE INSTALLATION 89 / 238: googledrive ================ @@ -4080,26 +4345,26 @@ downloaded 1.5 MB The downloaded source packages are in - ‘/tmp/RtmpYOy542/downloaded_packages’ + ‘/tmp/Rtmp1oTL77/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/googledrive_2.0.0.tar.gz' Content type 'application/x-gzip' length 1593656 bytes (1.5 MB) ================================================== downloaded 1.5 MB -foundpkgs: googledrive, /tmp/RtmpYOy542/downloaded_packages/googledrive_2.0.0.tar.gz -files: /tmp/RtmpYOy542/downloaded_packages/googledrive_2.0.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpYOy542/downloaded_packages/googledrive_2.0.0.tar.gz'' +foundpkgs: googledrive, /tmp/Rtmp1oTL77/downloaded_packages/googledrive_2.0.0.tar.gz +files: /tmp/Rtmp1oTL77/downloaded_packages/googledrive_2.0.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1oTL77/downloaded_packages/googledrive_2.0.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpYOy542/downloaded_packages’ + ‘/tmp/Rtmp1oTL77/downloaded_packages’ ================ -R PACKAGE INSTALLATION 90 / 240: googlesheets4 +R PACKAGE INSTALLATION 90 / 238: googlesheets4 ================ @@ -4118,26 +4383,26 @@ downloaded 216 KB The downloaded source packages are in - ‘/tmp/RtmpBFAIeZ/downloaded_packages’ + ‘/tmp/Rtmpx1m7b2/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/googlesheets4_1.0.0.tar.gz' Content type 'application/x-gzip' length 222038 bytes (216 KB) ================================================== downloaded 216 KB -foundpkgs: googlesheets4, /tmp/RtmpBFAIeZ/downloaded_packages/googlesheets4_1.0.0.tar.gz -files: /tmp/RtmpBFAIeZ/downloaded_packages/googlesheets4_1.0.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpBFAIeZ/downloaded_packages/googlesheets4_1.0.0.tar.gz'' +foundpkgs: googlesheets4, /tmp/Rtmpx1m7b2/downloaded_packages/googlesheets4_1.0.0.tar.gz +files: /tmp/Rtmpx1m7b2/downloaded_packages/googlesheets4_1.0.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpx1m7b2/downloaded_packages/googlesheets4_1.0.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpBFAIeZ/downloaded_packages’ + ‘/tmp/Rtmpx1m7b2/downloaded_packages’ ================ -R PACKAGE INSTALLATION 91 / 240: gplots +R PACKAGE INSTALLATION 91 / 238: gplots ================ @@ -4156,26 +4421,26 @@ downloaded 508 KB The downloaded source packages are in - ‘/tmp/Rtmpgt0tnm/downloaded_packages’ + ‘/tmp/RtmpqkRCZC/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/gplots_3.1.1.tar.gz' Content type 'application/x-gzip' length 520248 bytes (508 KB) ================================================== downloaded 508 KB -foundpkgs: gplots, /tmp/Rtmpgt0tnm/downloaded_packages/gplots_3.1.1.tar.gz -files: /tmp/Rtmpgt0tnm/downloaded_packages/gplots_3.1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpgt0tnm/downloaded_packages/gplots_3.1.1.tar.gz'' +foundpkgs: gplots, /tmp/RtmpqkRCZC/downloaded_packages/gplots_3.1.1.tar.gz +files: /tmp/RtmpqkRCZC/downloaded_packages/gplots_3.1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpqkRCZC/downloaded_packages/gplots_3.1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpgt0tnm/downloaded_packages’ + ‘/tmp/RtmpqkRCZC/downloaded_packages’ ================ -R PACKAGE INSTALLATION 92 / 240: gridExtra +R PACKAGE INSTALLATION 92 / 238: gridExtra ================ @@ -4189,26 +4454,26 @@ downloaded 1.0 MB The downloaded source packages are in - ‘/tmp/Rtmpxsr2H6/downloaded_packages’ + ‘/tmp/Rtmpss9Tee/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/gridExtra_2.3.tar.gz' Content type 'application/x-gzip' length 1062844 bytes (1.0 MB) ================================================== downloaded 1.0 MB -foundpkgs: gridExtra, /tmp/Rtmpxsr2H6/downloaded_packages/gridExtra_2.3.tar.gz -files: /tmp/Rtmpxsr2H6/downloaded_packages/gridExtra_2.3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpxsr2H6/downloaded_packages/gridExtra_2.3.tar.gz'' +foundpkgs: gridExtra, /tmp/Rtmpss9Tee/downloaded_packages/gridExtra_2.3.tar.gz +files: /tmp/Rtmpss9Tee/downloaded_packages/gridExtra_2.3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpss9Tee/downloaded_packages/gridExtra_2.3.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpxsr2H6/downloaded_packages’ + ‘/tmp/Rtmpss9Tee/downloaded_packages’ ================ -R PACKAGE INSTALLATION 93 / 240: gtable +R PACKAGE INSTALLATION 93 / 238: gtable ================ @@ -4222,26 +4487,26 @@ downloaded 359 KB The downloaded source packages are in - ‘/tmp/RtmpxDLmOj/downloaded_packages’ + ‘/tmp/RtmpdZlQRw/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/gtable_0.3.0.tar.gz' Content type 'application/x-gzip' length 368081 bytes (359 KB) ================================================== downloaded 359 KB -foundpkgs: gtable, /tmp/RtmpxDLmOj/downloaded_packages/gtable_0.3.0.tar.gz -files: /tmp/RtmpxDLmOj/downloaded_packages/gtable_0.3.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpxDLmOj/downloaded_packages/gtable_0.3.0.tar.gz'' +foundpkgs: gtable, /tmp/RtmpdZlQRw/downloaded_packages/gtable_0.3.0.tar.gz +files: /tmp/RtmpdZlQRw/downloaded_packages/gtable_0.3.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdZlQRw/downloaded_packages/gtable_0.3.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpxDLmOj/downloaded_packages’ + ‘/tmp/RtmpdZlQRw/downloaded_packages’ ================ -R PACKAGE INSTALLATION 94 / 240: gtools +R PACKAGE INSTALLATION 94 / 238: gtools ================ @@ -4255,26 +4520,26 @@ downloaded 234 KB The downloaded source packages are in - ‘/tmp/RtmpXJniZP/downloaded_packages’ + ‘/tmp/RtmpSegtke/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/gtools_3.9.2.tar.gz' Content type 'application/x-gzip' length 240402 bytes (234 KB) ================================================== downloaded 234 KB -foundpkgs: gtools, /tmp/RtmpXJniZP/downloaded_packages/gtools_3.9.2.tar.gz -files: /tmp/RtmpXJniZP/downloaded_packages/gtools_3.9.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXJniZP/downloaded_packages/gtools_3.9.2.tar.gz'' +foundpkgs: gtools, /tmp/RtmpSegtke/downloaded_packages/gtools_3.9.2.tar.gz +files: /tmp/RtmpSegtke/downloaded_packages/gtools_3.9.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSegtke/downloaded_packages/gtools_3.9.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpXJniZP/downloaded_packages’ + ‘/tmp/RtmpSegtke/downloaded_packages’ ================ -R PACKAGE INSTALLATION 95 / 240: haven +R PACKAGE INSTALLATION 95 / 238: haven ================ @@ -4303,26 +4568,26 @@ downloaded 289 KB The downloaded source packages are in - ‘/tmp/RtmpKHOmhz/downloaded_packages’ + ‘/tmp/RtmpniCjdI/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/haven_2.4.3.tar.gz' Content type 'application/x-gzip' length 296805 bytes (289 KB) ================================================== downloaded 289 KB -foundpkgs: haven, /tmp/RtmpKHOmhz/downloaded_packages/haven_2.4.3.tar.gz -files: /tmp/RtmpKHOmhz/downloaded_packages/haven_2.4.3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpKHOmhz/downloaded_packages/haven_2.4.3.tar.gz'' +foundpkgs: haven, /tmp/RtmpniCjdI/downloaded_packages/haven_2.4.3.tar.gz +files: /tmp/RtmpniCjdI/downloaded_packages/haven_2.4.3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpniCjdI/downloaded_packages/haven_2.4.3.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpKHOmhz/downloaded_packages’ + ‘/tmp/RtmpniCjdI/downloaded_packages’ ================ -R PACKAGE INSTALLATION 96 / 240: HiCcompare +R PACKAGE INSTALLATION 96 / 238: HiCcompare ================ @@ -4400,41 +4665,41 @@ Content type 'application/x-gzip' length 3708926 bytes (3.5 MB) ================================================== downloaded 3.5 MB -foundpkgs: R.oo, R.methodsS3, Rhtslib, R.utils, Rsamtools, Rhdf5lib, rhdf5filters, InteractionSet, QDNAseq, pheatmap, rhdf5, HiCcompare, /tmp/RtmpSp4t8q/downloaded_packages/R.oo_1.24.0.tar.gz, /tmp/RtmpSp4t8q/downloaded_packages/R.methodsS3_1.8.1.tar.gz, /tmp/RtmpSp4t8q/downloaded_packages/Rhtslib_1.22.0.tar.gz, /tmp/RtmpSp4t8q/downloaded_packages/R.utils_2.11.0.tar.gz, /tmp/RtmpSp4t8q/downloaded_packages/Rsamtools_2.6.0.tar.gz, /tmp/RtmpSp4t8q/downloaded_packages/Rhdf5lib_1.12.1.tar.gz, /tmp/RtmpSp4t8q/downloaded_packages/rhdf5filters_1.2.1.tar.gz, /tmp/RtmpSp4t8q/downloaded_packages/InteractionSet_1.18.1.tar.gz, /tmp/RtmpSp4t8q/downloaded_packages/QDNAseq_1.26.0.tar.gz, /tmp/RtmpSp4t8q/downloaded_packages/pheatmap_1.0.12.tar.gz, /tmp/RtmpSp4t8q/downloaded_packages/rhdf5_2.34.0.tar.gz, /tmp/RtmpSp4t8q/downloaded_packages/HiCcompare_1.12.0.tar.gz -files: /tmp/RtmpSp4t8q/downloaded_packages/R.oo_1.24.0.tar.gz, - /tmp/RtmpSp4t8q/downloaded_packages/R.methodsS3_1.8.1.tar.gz, - /tmp/RtmpSp4t8q/downloaded_packages/Rhtslib_1.22.0.tar.gz, - /tmp/RtmpSp4t8q/downloaded_packages/R.utils_2.11.0.tar.gz, - /tmp/RtmpSp4t8q/downloaded_packages/Rsamtools_2.6.0.tar.gz, - /tmp/RtmpSp4t8q/downloaded_packages/Rhdf5lib_1.12.1.tar.gz, - /tmp/RtmpSp4t8q/downloaded_packages/rhdf5filters_1.2.1.tar.gz, - /tmp/RtmpSp4t8q/downloaded_packages/InteractionSet_1.18.1.tar.gz, - /tmp/RtmpSp4t8q/downloaded_packages/QDNAseq_1.26.0.tar.gz, - /tmp/RtmpSp4t8q/downloaded_packages/pheatmap_1.0.12.tar.gz, - /tmp/RtmpSp4t8q/downloaded_packages/rhdf5_2.34.0.tar.gz, - /tmp/RtmpSp4t8q/downloaded_packages/HiCcompare_1.12.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSp4t8q/downloaded_packages/R.methodsS3_1.8.1.tar.gz'' -2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSp4t8q/downloaded_packages/Rhtslib_1.22.0.tar.gz'' -3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSp4t8q/downloaded_packages/Rhdf5lib_1.12.1.tar.gz'' -4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSp4t8q/downloaded_packages/InteractionSet_1.18.1.tar.gz'' -5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSp4t8q/downloaded_packages/pheatmap_1.0.12.tar.gz'' -6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSp4t8q/downloaded_packages/R.oo_1.24.0.tar.gz'' -7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSp4t8q/downloaded_packages/Rsamtools_2.6.0.tar.gz'' -8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSp4t8q/downloaded_packages/rhdf5filters_1.2.1.tar.gz'' -9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSp4t8q/downloaded_packages/R.utils_2.11.0.tar.gz'' -10): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSp4t8q/downloaded_packages/rhdf5_2.34.0.tar.gz'' -11): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSp4t8q/downloaded_packages/QDNAseq_1.26.0.tar.gz'' -12): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSp4t8q/downloaded_packages/HiCcompare_1.12.0.tar.gz'' +foundpkgs: R.oo, R.methodsS3, Rhtslib, R.utils, Rsamtools, Rhdf5lib, rhdf5filters, InteractionSet, QDNAseq, pheatmap, rhdf5, HiCcompare, /tmp/Rtmpa3MKME/downloaded_packages/R.oo_1.24.0.tar.gz, /tmp/Rtmpa3MKME/downloaded_packages/R.methodsS3_1.8.1.tar.gz, /tmp/Rtmpa3MKME/downloaded_packages/Rhtslib_1.22.0.tar.gz, /tmp/Rtmpa3MKME/downloaded_packages/R.utils_2.11.0.tar.gz, /tmp/Rtmpa3MKME/downloaded_packages/Rsamtools_2.6.0.tar.gz, /tmp/Rtmpa3MKME/downloaded_packages/Rhdf5lib_1.12.1.tar.gz, /tmp/Rtmpa3MKME/downloaded_packages/rhdf5filters_1.2.1.tar.gz, /tmp/Rtmpa3MKME/downloaded_packages/InteractionSet_1.18.1.tar.gz, /tmp/Rtmpa3MKME/downloaded_packages/QDNAseq_1.26.0.tar.gz, /tmp/Rtmpa3MKME/downloaded_packages/pheatmap_1.0.12.tar.gz, /tmp/Rtmpa3MKME/downloaded_packages/rhdf5_2.34.0.tar.gz, /tmp/Rtmpa3MKME/downloaded_packages/HiCcompare_1.12.0.tar.gz +files: /tmp/Rtmpa3MKME/downloaded_packages/R.oo_1.24.0.tar.gz, + /tmp/Rtmpa3MKME/downloaded_packages/R.methodsS3_1.8.1.tar.gz, + /tmp/Rtmpa3MKME/downloaded_packages/Rhtslib_1.22.0.tar.gz, + /tmp/Rtmpa3MKME/downloaded_packages/R.utils_2.11.0.tar.gz, + /tmp/Rtmpa3MKME/downloaded_packages/Rsamtools_2.6.0.tar.gz, + /tmp/Rtmpa3MKME/downloaded_packages/Rhdf5lib_1.12.1.tar.gz, + /tmp/Rtmpa3MKME/downloaded_packages/rhdf5filters_1.2.1.tar.gz, + /tmp/Rtmpa3MKME/downloaded_packages/InteractionSet_1.18.1.tar.gz, + /tmp/Rtmpa3MKME/downloaded_packages/QDNAseq_1.26.0.tar.gz, + /tmp/Rtmpa3MKME/downloaded_packages/pheatmap_1.0.12.tar.gz, + /tmp/Rtmpa3MKME/downloaded_packages/rhdf5_2.34.0.tar.gz, + /tmp/Rtmpa3MKME/downloaded_packages/HiCcompare_1.12.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpa3MKME/downloaded_packages/R.methodsS3_1.8.1.tar.gz'' +2): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpa3MKME/downloaded_packages/Rhtslib_1.22.0.tar.gz'' +3): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpa3MKME/downloaded_packages/Rhdf5lib_1.12.1.tar.gz'' +4): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpa3MKME/downloaded_packages/InteractionSet_1.18.1.tar.gz'' +5): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpa3MKME/downloaded_packages/pheatmap_1.0.12.tar.gz'' +6): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpa3MKME/downloaded_packages/R.oo_1.24.0.tar.gz'' +7): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpa3MKME/downloaded_packages/Rsamtools_2.6.0.tar.gz'' +8): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpa3MKME/downloaded_packages/rhdf5filters_1.2.1.tar.gz'' +9): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpa3MKME/downloaded_packages/R.utils_2.11.0.tar.gz'' +10): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpa3MKME/downloaded_packages/rhdf5_2.34.0.tar.gz'' +11): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpa3MKME/downloaded_packages/QDNAseq_1.26.0.tar.gz'' +12): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpa3MKME/downloaded_packages/HiCcompare_1.12.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpSp4t8q/downloaded_packages’ + ‘/tmp/Rtmpa3MKME/downloaded_packages’ ================ -R PACKAGE INSTALLATION 97 / 240: highr +R PACKAGE INSTALLATION 97 / 238: highr ================ @@ -4448,26 +4713,26 @@ downloaded 14 KB The downloaded source packages are in - ‘/tmp/RtmpDzGuuh/downloaded_packages’ + ‘/tmp/Rtmp0P1CWt/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/highr_0.9.tar.gz' Content type 'application/x-gzip' length 15188 bytes (14 KB) ================================================== downloaded 14 KB -foundpkgs: highr, /tmp/RtmpDzGuuh/downloaded_packages/highr_0.9.tar.gz -files: /tmp/RtmpDzGuuh/downloaded_packages/highr_0.9.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpDzGuuh/downloaded_packages/highr_0.9.tar.gz'' +foundpkgs: highr, /tmp/Rtmp0P1CWt/downloaded_packages/highr_0.9.tar.gz +files: /tmp/Rtmp0P1CWt/downloaded_packages/highr_0.9.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp0P1CWt/downloaded_packages/highr_0.9.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpDzGuuh/downloaded_packages’ + ‘/tmp/Rtmp0P1CWt/downloaded_packages’ ================ -R PACKAGE INSTALLATION 98 / 240: hms +R PACKAGE INSTALLATION 98 / 238: hms ================ @@ -4481,26 +4746,26 @@ downloaded 42 KB The downloaded source packages are in - ‘/tmp/Rtmp7b9gzd/downloaded_packages’ + ‘/tmp/RtmpWYhGOs/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/hms_1.1.1.tar.gz' Content type 'application/x-gzip' length 43117 bytes (42 KB) ================================================== downloaded 42 KB -foundpkgs: hms, /tmp/Rtmp7b9gzd/downloaded_packages/hms_1.1.1.tar.gz -files: /tmp/Rtmp7b9gzd/downloaded_packages/hms_1.1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7b9gzd/downloaded_packages/hms_1.1.1.tar.gz'' +foundpkgs: hms, /tmp/RtmpWYhGOs/downloaded_packages/hms_1.1.1.tar.gz +files: /tmp/RtmpWYhGOs/downloaded_packages/hms_1.1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpWYhGOs/downloaded_packages/hms_1.1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp7b9gzd/downloaded_packages’ + ‘/tmp/RtmpWYhGOs/downloaded_packages’ ================ -R PACKAGE INSTALLATION 99 / 240: htmltools +R PACKAGE INSTALLATION 99 / 238: htmltools ================ @@ -4514,26 +4779,26 @@ downloaded 121 KB The downloaded source packages are in - ‘/tmp/RtmpE2oYF6/downloaded_packages’ + ‘/tmp/RtmpHBWMOs/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/htmltools_0.5.2.tar.gz' Content type 'application/x-gzip' length 124510 bytes (121 KB) ================================================== downloaded 121 KB -foundpkgs: htmltools, /tmp/RtmpE2oYF6/downloaded_packages/htmltools_0.5.2.tar.gz -files: /tmp/RtmpE2oYF6/downloaded_packages/htmltools_0.5.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpE2oYF6/downloaded_packages/htmltools_0.5.2.tar.gz'' +foundpkgs: htmltools, /tmp/RtmpHBWMOs/downloaded_packages/htmltools_0.5.2.tar.gz +files: /tmp/RtmpHBWMOs/downloaded_packages/htmltools_0.5.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpHBWMOs/downloaded_packages/htmltools_0.5.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpE2oYF6/downloaded_packages’ + ‘/tmp/RtmpHBWMOs/downloaded_packages’ ================ -R PACKAGE INSTALLATION 100 / 240: htmlwidgets +R PACKAGE INSTALLATION 100 / 238: htmlwidgets ================ @@ -4547,26 +4812,26 @@ downloaded 934 KB The downloaded source packages are in - ‘/tmp/RtmpaBn7oM/downloaded_packages’ + ‘/tmp/Rtmp8tbxUR/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/htmlwidgets_1.5.4.tar.gz' Content type 'application/x-gzip' length 956850 bytes (934 KB) ================================================== downloaded 934 KB -foundpkgs: htmlwidgets, /tmp/RtmpaBn7oM/downloaded_packages/htmlwidgets_1.5.4.tar.gz -files: /tmp/RtmpaBn7oM/downloaded_packages/htmlwidgets_1.5.4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpaBn7oM/downloaded_packages/htmlwidgets_1.5.4.tar.gz'' +foundpkgs: htmlwidgets, /tmp/Rtmp8tbxUR/downloaded_packages/htmlwidgets_1.5.4.tar.gz +files: /tmp/Rtmp8tbxUR/downloaded_packages/htmlwidgets_1.5.4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8tbxUR/downloaded_packages/htmlwidgets_1.5.4.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpaBn7oM/downloaded_packages’ + ‘/tmp/Rtmp8tbxUR/downloaded_packages’ ================ -R PACKAGE INSTALLATION 101 / 240: httr +R PACKAGE INSTALLATION 101 / 238: httr ================ @@ -4580,26 +4845,26 @@ downloaded 156 KB The downloaded source packages are in - ‘/tmp/RtmpcpU5UU/downloaded_packages’ + ‘/tmp/RtmpYjFeRL/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/httr_1.4.2.tar.gz' Content type 'application/x-gzip' length 159950 bytes (156 KB) ================================================== downloaded 156 KB -foundpkgs: httr, /tmp/RtmpcpU5UU/downloaded_packages/httr_1.4.2.tar.gz -files: /tmp/RtmpcpU5UU/downloaded_packages/httr_1.4.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpcpU5UU/downloaded_packages/httr_1.4.2.tar.gz'' +foundpkgs: httr, /tmp/RtmpYjFeRL/downloaded_packages/httr_1.4.2.tar.gz +files: /tmp/RtmpYjFeRL/downloaded_packages/httr_1.4.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpYjFeRL/downloaded_packages/httr_1.4.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpcpU5UU/downloaded_packages’ + ‘/tmp/RtmpYjFeRL/downloaded_packages’ ================ -R PACKAGE INSTALLATION 102 / 240: ids +R PACKAGE INSTALLATION 102 / 238: ids ================ @@ -4613,26 +4878,26 @@ downloaded 89 KB The downloaded source packages are in - ‘/tmp/RtmpuxOYB8/downloaded_packages’ + ‘/tmp/Rtmp7yINtB/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/ids_1.0.1.tar.gz' Content type 'application/x-gzip' length 91213 bytes (89 KB) ================================================== downloaded 89 KB -foundpkgs: ids, /tmp/RtmpuxOYB8/downloaded_packages/ids_1.0.1.tar.gz -files: /tmp/RtmpuxOYB8/downloaded_packages/ids_1.0.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpuxOYB8/downloaded_packages/ids_1.0.1.tar.gz'' +foundpkgs: ids, /tmp/Rtmp7yINtB/downloaded_packages/ids_1.0.1.tar.gz +files: /tmp/Rtmp7yINtB/downloaded_packages/ids_1.0.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7yINtB/downloaded_packages/ids_1.0.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpuxOYB8/downloaded_packages’ + ‘/tmp/Rtmp7yINtB/downloaded_packages’ ================ -R PACKAGE INSTALLATION 103 / 240: impute +R PACKAGE INSTALLATION 103 / 238: impute ================ @@ -4654,7 +4919,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 104 / 240: ini +R PACKAGE INSTALLATION 104 / 238: ini ================ @@ -4668,26 +4933,26 @@ downloaded 3488 bytes The downloaded source packages are in - ‘/tmp/RtmpSZTePa/downloaded_packages’ + ‘/tmp/Rtmp8oz95S/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/ini_0.3.1.tar.gz' Content type 'application/x-gzip' length 3488 bytes ================================================== downloaded 3488 bytes -foundpkgs: ini, /tmp/RtmpSZTePa/downloaded_packages/ini_0.3.1.tar.gz -files: /tmp/RtmpSZTePa/downloaded_packages/ini_0.3.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSZTePa/downloaded_packages/ini_0.3.1.tar.gz'' +foundpkgs: ini, /tmp/Rtmp8oz95S/downloaded_packages/ini_0.3.1.tar.gz +files: /tmp/Rtmp8oz95S/downloaded_packages/ini_0.3.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8oz95S/downloaded_packages/ini_0.3.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpSZTePa/downloaded_packages’ + ‘/tmp/Rtmp8oz95S/downloaded_packages’ ================ -R PACKAGE INSTALLATION 105 / 240: InteractionSet +R PACKAGE INSTALLATION 105 / 238: InteractionSet ================ @@ -4709,7 +4974,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 106 / 240: IRanges +R PACKAGE INSTALLATION 106 / 238: IRanges ================ @@ -4731,7 +4996,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 107 / 240: isoband +R PACKAGE INSTALLATION 107 / 238: isoband ================ @@ -4745,26 +5010,26 @@ downloaded 1.6 MB The downloaded source packages are in - ‘/tmp/RtmpBjjOL8/downloaded_packages’ + ‘/tmp/RtmpJqCNZB/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/isoband_0.2.5.tar.gz' Content type 'application/x-gzip' length 1671911 bytes (1.6 MB) ================================================== downloaded 1.6 MB -foundpkgs: isoband, /tmp/RtmpBjjOL8/downloaded_packages/isoband_0.2.5.tar.gz -files: /tmp/RtmpBjjOL8/downloaded_packages/isoband_0.2.5.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpBjjOL8/downloaded_packages/isoband_0.2.5.tar.gz'' +foundpkgs: isoband, /tmp/RtmpJqCNZB/downloaded_packages/isoband_0.2.5.tar.gz +files: /tmp/RtmpJqCNZB/downloaded_packages/isoband_0.2.5.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpJqCNZB/downloaded_packages/isoband_0.2.5.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpBjjOL8/downloaded_packages’ + ‘/tmp/RtmpJqCNZB/downloaded_packages’ ================ -R PACKAGE INSTALLATION 108 / 240: jpeg +R PACKAGE INSTALLATION 108 / 238: jpeg ================ @@ -4778,26 +5043,26 @@ downloaded 18 KB The downloaded source packages are in - ‘/tmp/RtmpQ6mec9/downloaded_packages’ + ‘/tmp/RtmpowhEc6/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/jpeg_0.1-9.tar.gz' Content type 'application/x-gzip' length 18596 bytes (18 KB) ================================================== downloaded 18 KB -foundpkgs: jpeg, /tmp/RtmpQ6mec9/downloaded_packages/jpeg_0.1-9.tar.gz -files: /tmp/RtmpQ6mec9/downloaded_packages/jpeg_0.1-9.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQ6mec9/downloaded_packages/jpeg_0.1-9.tar.gz'' +foundpkgs: jpeg, /tmp/RtmpowhEc6/downloaded_packages/jpeg_0.1-9.tar.gz +files: /tmp/RtmpowhEc6/downloaded_packages/jpeg_0.1-9.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpowhEc6/downloaded_packages/jpeg_0.1-9.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpQ6mec9/downloaded_packages’ + ‘/tmp/RtmpowhEc6/downloaded_packages’ ================ -R PACKAGE INSTALLATION 109 / 240: jsonlite +R PACKAGE INSTALLATION 109 / 238: jsonlite ================ @@ -4811,26 +5076,26 @@ downloaded 411 KB The downloaded source packages are in - ‘/tmp/RtmpICWRAJ/downloaded_packages’ + ‘/tmp/Rtmpz7wbBk/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/jsonlite_1.7.2.tar.gz' Content type 'application/x-gzip' length 421716 bytes (411 KB) ================================================== downloaded 411 KB -foundpkgs: jsonlite, /tmp/RtmpICWRAJ/downloaded_packages/jsonlite_1.7.2.tar.gz -files: /tmp/RtmpICWRAJ/downloaded_packages/jsonlite_1.7.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpICWRAJ/downloaded_packages/jsonlite_1.7.2.tar.gz'' +foundpkgs: jsonlite, /tmp/Rtmpz7wbBk/downloaded_packages/jsonlite_1.7.2.tar.gz +files: /tmp/Rtmpz7wbBk/downloaded_packages/jsonlite_1.7.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz7wbBk/downloaded_packages/jsonlite_1.7.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpICWRAJ/downloaded_packages’ + ‘/tmp/Rtmpz7wbBk/downloaded_packages’ ================ -R PACKAGE INSTALLATION 110 / 240: kableExtra +R PACKAGE INSTALLATION 110 / 238: kableExtra ================ @@ -4879,26 +5144,26 @@ downloaded 1.6 MB The downloaded source packages are in - ‘/tmp/RtmpAsMFxH/downloaded_packages’ + ‘/tmp/RtmpCfJy4M/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/kableExtra_1.3.4.tar.gz' Content type 'application/x-gzip' length 1646490 bytes (1.6 MB) ================================================== downloaded 1.6 MB -foundpkgs: kableExtra, /tmp/RtmpAsMFxH/downloaded_packages/kableExtra_1.3.4.tar.gz -files: /tmp/RtmpAsMFxH/downloaded_packages/kableExtra_1.3.4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpAsMFxH/downloaded_packages/kableExtra_1.3.4.tar.gz'' +foundpkgs: kableExtra, /tmp/RtmpCfJy4M/downloaded_packages/kableExtra_1.3.4.tar.gz +files: /tmp/RtmpCfJy4M/downloaded_packages/kableExtra_1.3.4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpCfJy4M/downloaded_packages/kableExtra_1.3.4.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpAsMFxH/downloaded_packages’ + ‘/tmp/RtmpCfJy4M/downloaded_packages’ ================ -R PACKAGE INSTALLATION 111 / 240: knitr +R PACKAGE INSTALLATION 111 / 238: knitr ================ @@ -4912,26 +5177,26 @@ downloaded 874 KB The downloaded source packages are in - ‘/tmp/RtmpeD2eSH/downloaded_packages’ + ‘/tmp/RtmpBiCCah/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/knitr_1.37.tar.gz' Content type 'application/x-gzip' length 895567 bytes (874 KB) ================================================== downloaded 874 KB -foundpkgs: knitr, /tmp/RtmpeD2eSH/downloaded_packages/knitr_1.37.tar.gz -files: /tmp/RtmpeD2eSH/downloaded_packages/knitr_1.37.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeD2eSH/downloaded_packages/knitr_1.37.tar.gz'' +foundpkgs: knitr, /tmp/RtmpBiCCah/downloaded_packages/knitr_1.37.tar.gz +files: /tmp/RtmpBiCCah/downloaded_packages/knitr_1.37.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpBiCCah/downloaded_packages/knitr_1.37.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpeD2eSH/downloaded_packages’ + ‘/tmp/RtmpBiCCah/downloaded_packages’ ================ -R PACKAGE INSTALLATION 112 / 240: labeling +R PACKAGE INSTALLATION 112 / 238: labeling ================ @@ -4945,26 +5210,26 @@ downloaded 10156 bytes The downloaded source packages are in - ‘/tmp/RtmpRbpGa6/downloaded_packages’ + ‘/tmp/RtmpYfJ3Hl/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/labeling_0.4.2.tar.gz' Content type 'application/x-gzip' length 10156 bytes ================================================== downloaded 10156 bytes -foundpkgs: labeling, /tmp/RtmpRbpGa6/downloaded_packages/labeling_0.4.2.tar.gz -files: /tmp/RtmpRbpGa6/downloaded_packages/labeling_0.4.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpRbpGa6/downloaded_packages/labeling_0.4.2.tar.gz'' +foundpkgs: labeling, /tmp/RtmpYfJ3Hl/downloaded_packages/labeling_0.4.2.tar.gz +files: /tmp/RtmpYfJ3Hl/downloaded_packages/labeling_0.4.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpYfJ3Hl/downloaded_packages/labeling_0.4.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpRbpGa6/downloaded_packages’ + ‘/tmp/RtmpYfJ3Hl/downloaded_packages’ ================ -R PACKAGE INSTALLATION 113 / 240: lambda.r +R PACKAGE INSTALLATION 113 / 238: lambda.r ================ @@ -4978,26 +5243,26 @@ downloaded 25 KB The downloaded source packages are in - ‘/tmp/RtmpoElVj8/downloaded_packages’ + ‘/tmp/RtmpaYIBWn/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/lambda.r_1.2.4.tar.gz' Content type 'application/x-gzip' length 25666 bytes (25 KB) ================================================== downloaded 25 KB -foundpkgs: lambda.r, /tmp/RtmpoElVj8/downloaded_packages/lambda.r_1.2.4.tar.gz -files: /tmp/RtmpoElVj8/downloaded_packages/lambda.r_1.2.4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpoElVj8/downloaded_packages/lambda.r_1.2.4.tar.gz'' +foundpkgs: lambda.r, /tmp/RtmpaYIBWn/downloaded_packages/lambda.r_1.2.4.tar.gz +files: /tmp/RtmpaYIBWn/downloaded_packages/lambda.r_1.2.4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpaYIBWn/downloaded_packages/lambda.r_1.2.4.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpoElVj8/downloaded_packages’ + ‘/tmp/RtmpaYIBWn/downloaded_packages’ ================ -R PACKAGE INSTALLATION 114 / 240: later +R PACKAGE INSTALLATION 114 / 238: later ================ @@ -5011,26 +5276,26 @@ downloaded 62 KB The downloaded source packages are in - ‘/tmp/RtmpijaQFD/downloaded_packages’ + ‘/tmp/RtmpSQnu8Y/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/later_1.3.0.tar.gz' Content type 'application/x-gzip' length 63785 bytes (62 KB) ================================================== downloaded 62 KB -foundpkgs: later, /tmp/RtmpijaQFD/downloaded_packages/later_1.3.0.tar.gz -files: /tmp/RtmpijaQFD/downloaded_packages/later_1.3.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpijaQFD/downloaded_packages/later_1.3.0.tar.gz'' +foundpkgs: later, /tmp/RtmpSQnu8Y/downloaded_packages/later_1.3.0.tar.gz +files: /tmp/RtmpSQnu8Y/downloaded_packages/later_1.3.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSQnu8Y/downloaded_packages/later_1.3.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpijaQFD/downloaded_packages’ + ‘/tmp/RtmpSQnu8Y/downloaded_packages’ ================ -R PACKAGE INSTALLATION 115 / 240: lazyeval +R PACKAGE INSTALLATION 115 / 238: lazyeval ================ @@ -5044,26 +5309,26 @@ downloaded 81 KB The downloaded source packages are in - ‘/tmp/Rtmpz2D5XD/downloaded_packages’ + ‘/tmp/Rtmp89NVHA/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/lazyeval_0.2.2.tar.gz' Content type 'application/x-gzip' length 83482 bytes (81 KB) ================================================== downloaded 81 KB -foundpkgs: lazyeval, /tmp/Rtmpz2D5XD/downloaded_packages/lazyeval_0.2.2.tar.gz -files: /tmp/Rtmpz2D5XD/downloaded_packages/lazyeval_0.2.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz2D5XD/downloaded_packages/lazyeval_0.2.2.tar.gz'' +foundpkgs: lazyeval, /tmp/Rtmp89NVHA/downloaded_packages/lazyeval_0.2.2.tar.gz +files: /tmp/Rtmp89NVHA/downloaded_packages/lazyeval_0.2.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp89NVHA/downloaded_packages/lazyeval_0.2.2.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpz2D5XD/downloaded_packages’ + ‘/tmp/Rtmp89NVHA/downloaded_packages’ ================ -R PACKAGE INSTALLATION 116 / 240: lemon +R PACKAGE INSTALLATION 116 / 238: lemon ================ @@ -5077,26 +5342,26 @@ downloaded 566 KB The downloaded source packages are in - ‘/tmp/RtmpkHDlwT/downloaded_packages’ + ‘/tmp/RtmponrKDM/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/lemon_0.4.5.tar.gz' Content type 'application/x-gzip' length 580086 bytes (566 KB) ================================================== downloaded 566 KB -foundpkgs: lemon, /tmp/RtmpkHDlwT/downloaded_packages/lemon_0.4.5.tar.gz -files: /tmp/RtmpkHDlwT/downloaded_packages/lemon_0.4.5.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpkHDlwT/downloaded_packages/lemon_0.4.5.tar.gz'' +foundpkgs: lemon, /tmp/RtmponrKDM/downloaded_packages/lemon_0.4.5.tar.gz +files: /tmp/RtmponrKDM/downloaded_packages/lemon_0.4.5.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmponrKDM/downloaded_packages/lemon_0.4.5.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpkHDlwT/downloaded_packages’ + ‘/tmp/RtmponrKDM/downloaded_packages’ ================ -R PACKAGE INSTALLATION 117 / 240: lifecycle +R PACKAGE INSTALLATION 117 / 238: lifecycle ================ @@ -5110,26 +5375,26 @@ downloaded 97 KB The downloaded source packages are in - ‘/tmp/RtmpWyAwFe/downloaded_packages’ + ‘/tmp/RtmpLWzGTH/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/lifecycle_1.0.1.tar.gz' Content type 'application/x-gzip' length 99716 bytes (97 KB) ================================================== downloaded 97 KB -foundpkgs: lifecycle, /tmp/RtmpWyAwFe/downloaded_packages/lifecycle_1.0.1.tar.gz -files: /tmp/RtmpWyAwFe/downloaded_packages/lifecycle_1.0.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpWyAwFe/downloaded_packages/lifecycle_1.0.1.tar.gz'' +foundpkgs: lifecycle, /tmp/RtmpLWzGTH/downloaded_packages/lifecycle_1.0.1.tar.gz +files: /tmp/RtmpLWzGTH/downloaded_packages/lifecycle_1.0.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpLWzGTH/downloaded_packages/lifecycle_1.0.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpWyAwFe/downloaded_packages’ + ‘/tmp/RtmpLWzGTH/downloaded_packages’ ================ -R PACKAGE INSTALLATION 118 / 240: limma +R PACKAGE INSTALLATION 118 / 238: limma ================ @@ -5151,7 +5416,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 119 / 240: listenv +R PACKAGE INSTALLATION 119 / 238: listenv ================ @@ -5165,26 +5430,26 @@ downloaded 35 KB The downloaded source packages are in - ‘/tmp/RtmpBm2rni/downloaded_packages’ + ‘/tmp/RtmpCiZzmw/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/listenv_0.8.0.tar.gz' Content type 'application/x-gzip' length 36762 bytes (35 KB) ================================================== downloaded 35 KB -foundpkgs: listenv, /tmp/RtmpBm2rni/downloaded_packages/listenv_0.8.0.tar.gz -files: /tmp/RtmpBm2rni/downloaded_packages/listenv_0.8.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpBm2rni/downloaded_packages/listenv_0.8.0.tar.gz'' +foundpkgs: listenv, /tmp/RtmpCiZzmw/downloaded_packages/listenv_0.8.0.tar.gz +files: /tmp/RtmpCiZzmw/downloaded_packages/listenv_0.8.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpCiZzmw/downloaded_packages/listenv_0.8.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpBm2rni/downloaded_packages’ + ‘/tmp/RtmpCiZzmw/downloaded_packages’ ================ -R PACKAGE INSTALLATION 120 / 240: lme4 +R PACKAGE INSTALLATION 120 / 238: lme4 ================ @@ -5198,26 +5463,26 @@ downloaded 3.2 MB The downloaded source packages are in - ‘/tmp/Rtmp8a8dpD/downloaded_packages’ + ‘/tmp/RtmpOg7ERf/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/lme4_1.1-27.1.tar.gz' Content type 'application/x-gzip' length 3311365 bytes (3.2 MB) ================================================== downloaded 3.2 MB -foundpkgs: lme4, /tmp/Rtmp8a8dpD/downloaded_packages/lme4_1.1-27.1.tar.gz -files: /tmp/Rtmp8a8dpD/downloaded_packages/lme4_1.1-27.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8a8dpD/downloaded_packages/lme4_1.1-27.1.tar.gz'' +foundpkgs: lme4, /tmp/RtmpOg7ERf/downloaded_packages/lme4_1.1-27.1.tar.gz +files: /tmp/RtmpOg7ERf/downloaded_packages/lme4_1.1-27.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpOg7ERf/downloaded_packages/lme4_1.1-27.1.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp8a8dpD/downloaded_packages’ + ‘/tmp/RtmpOg7ERf/downloaded_packages’ ================ -R PACKAGE INSTALLATION 121 / 240: lmerTest +R PACKAGE INSTALLATION 121 / 238: lmerTest ================ @@ -5231,26 +5496,26 @@ downloaded 191 KB The downloaded source packages are in - ‘/tmp/RtmpD9MViJ/downloaded_packages’ + ‘/tmp/RtmpXWkrSt/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/lmerTest_3.1-3.tar.gz' Content type 'application/x-gzip' length 195633 bytes (191 KB) ================================================== downloaded 191 KB -foundpkgs: lmerTest, /tmp/RtmpD9MViJ/downloaded_packages/lmerTest_3.1-3.tar.gz -files: /tmp/RtmpD9MViJ/downloaded_packages/lmerTest_3.1-3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpD9MViJ/downloaded_packages/lmerTest_3.1-3.tar.gz'' +foundpkgs: lmerTest, /tmp/RtmpXWkrSt/downloaded_packages/lmerTest_3.1-3.tar.gz +files: /tmp/RtmpXWkrSt/downloaded_packages/lmerTest_3.1-3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXWkrSt/downloaded_packages/lmerTest_3.1-3.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpD9MViJ/downloaded_packages’ + ‘/tmp/RtmpXWkrSt/downloaded_packages’ ================ -R PACKAGE INSTALLATION 122 / 240: locfit +R PACKAGE INSTALLATION 122 / 238: locfit ================ @@ -5264,26 +5529,26 @@ downloaded 196 KB The downloaded source packages are in - ‘/tmp/RtmpKHuwPp/downloaded_packages’ + ‘/tmp/RtmpsKgkrj/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/locfit_1.5-9.4.tar.gz' Content type 'application/x-gzip' length 200998 bytes (196 KB) ================================================== downloaded 196 KB -foundpkgs: locfit, /tmp/RtmpKHuwPp/downloaded_packages/locfit_1.5-9.4.tar.gz -files: /tmp/RtmpKHuwPp/downloaded_packages/locfit_1.5-9.4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpKHuwPp/downloaded_packages/locfit_1.5-9.4.tar.gz'' +foundpkgs: locfit, /tmp/RtmpsKgkrj/downloaded_packages/locfit_1.5-9.4.tar.gz +files: /tmp/RtmpsKgkrj/downloaded_packages/locfit_1.5-9.4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsKgkrj/downloaded_packages/locfit_1.5-9.4.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpKHuwPp/downloaded_packages’ + ‘/tmp/RtmpsKgkrj/downloaded_packages’ ================ -R PACKAGE INSTALLATION 123 / 240: lubridate +R PACKAGE INSTALLATION 123 / 238: lubridate ================ @@ -5297,26 +5562,26 @@ downloaded 464 KB The downloaded source packages are in - ‘/tmp/Rtmp96MCRS/downloaded_packages’ + ‘/tmp/RtmpdHVNeb/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/lubridate_1.8.0.tar.gz' Content type 'application/x-gzip' length 475704 bytes (464 KB) ================================================== downloaded 464 KB -foundpkgs: lubridate, /tmp/Rtmp96MCRS/downloaded_packages/lubridate_1.8.0.tar.gz -files: /tmp/Rtmp96MCRS/downloaded_packages/lubridate_1.8.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp96MCRS/downloaded_packages/lubridate_1.8.0.tar.gz'' +foundpkgs: lubridate, /tmp/RtmpdHVNeb/downloaded_packages/lubridate_1.8.0.tar.gz +files: /tmp/RtmpdHVNeb/downloaded_packages/lubridate_1.8.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdHVNeb/downloaded_packages/lubridate_1.8.0.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp96MCRS/downloaded_packages’ + ‘/tmp/RtmpdHVNeb/downloaded_packages’ ================ -R PACKAGE INSTALLATION 124 / 240: magrittr +R PACKAGE INSTALLATION 124 / 238: magrittr ================ @@ -5330,26 +5595,26 @@ downloaded 259 KB The downloaded source packages are in - ‘/tmp/RtmpmYY2Vc/downloaded_packages’ + ‘/tmp/RtmpgQzhON/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/magrittr_2.0.1.tar.gz' Content type 'application/x-gzip' length 265580 bytes (259 KB) ================================================== downloaded 259 KB -foundpkgs: magrittr, /tmp/RtmpmYY2Vc/downloaded_packages/magrittr_2.0.1.tar.gz -files: /tmp/RtmpmYY2Vc/downloaded_packages/magrittr_2.0.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpmYY2Vc/downloaded_packages/magrittr_2.0.1.tar.gz'' +foundpkgs: magrittr, /tmp/RtmpgQzhON/downloaded_packages/magrittr_2.0.1.tar.gz +files: /tmp/RtmpgQzhON/downloaded_packages/magrittr_2.0.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpgQzhON/downloaded_packages/magrittr_2.0.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpmYY2Vc/downloaded_packages’ + ‘/tmp/RtmpgQzhON/downloaded_packages’ ================ -R PACKAGE INSTALLATION 125 / 240: maptools +R PACKAGE INSTALLATION 125 / 238: maptools ================ @@ -5363,26 +5628,26 @@ downloaded 1.5 MB The downloaded source packages are in - ‘/tmp/RtmpHNV9pq/downloaded_packages’ + ‘/tmp/RtmpE9r3jg/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/maptools_1.1-2.tar.gz' Content type 'application/x-gzip' length 1594390 bytes (1.5 MB) ================================================== downloaded 1.5 MB -foundpkgs: maptools, /tmp/RtmpHNV9pq/downloaded_packages/maptools_1.1-2.tar.gz -files: /tmp/RtmpHNV9pq/downloaded_packages/maptools_1.1-2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpHNV9pq/downloaded_packages/maptools_1.1-2.tar.gz'' +foundpkgs: maptools, /tmp/RtmpE9r3jg/downloaded_packages/maptools_1.1-2.tar.gz +files: /tmp/RtmpE9r3jg/downloaded_packages/maptools_1.1-2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpE9r3jg/downloaded_packages/maptools_1.1-2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpHNV9pq/downloaded_packages’ + ‘/tmp/RtmpE9r3jg/downloaded_packages’ ================ -R PACKAGE INSTALLATION 126 / 240: markdown +R PACKAGE INSTALLATION 126 / 238: markdown ================ @@ -5396,26 +5661,26 @@ downloaded 79 KB The downloaded source packages are in - ‘/tmp/RtmpCQw94r/downloaded_packages’ + ‘/tmp/RtmpcjwgJi/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/markdown_1.1.tar.gz' Content type 'application/x-gzip' length 81050 bytes (79 KB) ================================================== downloaded 79 KB -foundpkgs: markdown, /tmp/RtmpCQw94r/downloaded_packages/markdown_1.1.tar.gz -files: /tmp/RtmpCQw94r/downloaded_packages/markdown_1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpCQw94r/downloaded_packages/markdown_1.1.tar.gz'' +foundpkgs: markdown, /tmp/RtmpcjwgJi/downloaded_packages/markdown_1.1.tar.gz +files: /tmp/RtmpcjwgJi/downloaded_packages/markdown_1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpcjwgJi/downloaded_packages/markdown_1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpCQw94r/downloaded_packages’ + ‘/tmp/RtmpcjwgJi/downloaded_packages’ ================ -R PACKAGE INSTALLATION 127 / 240: marray +R PACKAGE INSTALLATION 127 / 238: marray ================ @@ -5437,7 +5702,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 128 / 240: MatrixGenerics +R PACKAGE INSTALLATION 128 / 238: MatrixGenerics ================ @@ -5459,7 +5724,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 129 / 240: MatrixModels +R PACKAGE INSTALLATION 129 / 238: MatrixModels ================ @@ -5473,26 +5738,26 @@ downloaded 23 KB The downloaded source packages are in - ‘/tmp/RtmpdCIlaN/downloaded_packages’ + ‘/tmp/Rtmp8veTln/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/MatrixModels_0.5-0.tar.gz' Content type 'application/x-gzip' length 24045 bytes (23 KB) ================================================== downloaded 23 KB -foundpkgs: MatrixModels, /tmp/RtmpdCIlaN/downloaded_packages/MatrixModels_0.5-0.tar.gz -files: /tmp/RtmpdCIlaN/downloaded_packages/MatrixModels_0.5-0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdCIlaN/downloaded_packages/MatrixModels_0.5-0.tar.gz'' +foundpkgs: MatrixModels, /tmp/Rtmp8veTln/downloaded_packages/MatrixModels_0.5-0.tar.gz +files: /tmp/Rtmp8veTln/downloaded_packages/MatrixModels_0.5-0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8veTln/downloaded_packages/MatrixModels_0.5-0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpdCIlaN/downloaded_packages’ + ‘/tmp/Rtmp8veTln/downloaded_packages’ ================ -R PACKAGE INSTALLATION 130 / 240: matrixStats +R PACKAGE INSTALLATION 130 / 238: matrixStats ================ @@ -5506,26 +5771,26 @@ downloaded 196 KB The downloaded source packages are in - ‘/tmp/RtmprqfJCS/downloaded_packages’ + ‘/tmp/RtmpVkya4A/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/matrixStats_0.61.0.tar.gz' Content type 'application/x-gzip' length 201077 bytes (196 KB) ================================================== downloaded 196 KB -foundpkgs: matrixStats, /tmp/RtmprqfJCS/downloaded_packages/matrixStats_0.61.0.tar.gz -files: /tmp/RtmprqfJCS/downloaded_packages/matrixStats_0.61.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmprqfJCS/downloaded_packages/matrixStats_0.61.0.tar.gz'' +foundpkgs: matrixStats, /tmp/RtmpVkya4A/downloaded_packages/matrixStats_0.61.0.tar.gz +files: /tmp/RtmpVkya4A/downloaded_packages/matrixStats_0.61.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpVkya4A/downloaded_packages/matrixStats_0.61.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmprqfJCS/downloaded_packages’ + ‘/tmp/RtmpVkya4A/downloaded_packages’ ================ -R PACKAGE INSTALLATION 131 / 240: memoise +R PACKAGE INSTALLATION 131 / 238: memoise ================ @@ -5539,26 +5804,26 @@ downloaded 17 KB The downloaded source packages are in - ‘/tmp/Rtmpjxkq49/downloaded_packages’ + ‘/tmp/RtmpTB7kA6/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/memoise_2.0.1.tar.gz' Content type 'application/x-gzip' length 17852 bytes (17 KB) ================================================== downloaded 17 KB -foundpkgs: memoise, /tmp/Rtmpjxkq49/downloaded_packages/memoise_2.0.1.tar.gz -files: /tmp/Rtmpjxkq49/downloaded_packages/memoise_2.0.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpjxkq49/downloaded_packages/memoise_2.0.1.tar.gz'' +foundpkgs: memoise, /tmp/RtmpTB7kA6/downloaded_packages/memoise_2.0.1.tar.gz +files: /tmp/RtmpTB7kA6/downloaded_packages/memoise_2.0.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTB7kA6/downloaded_packages/memoise_2.0.1.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpjxkq49/downloaded_packages’ + ‘/tmp/RtmpTB7kA6/downloaded_packages’ ================ -R PACKAGE INSTALLATION 132 / 240: mime +R PACKAGE INSTALLATION 132 / 238: mime ================ @@ -5572,26 +5837,26 @@ downloaded 12 KB The downloaded source packages are in - ‘/tmp/RtmpbIvxKP/downloaded_packages’ + ‘/tmp/RtmpdpBuRi/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/mime_0.12.tar.gz' Content type 'application/x-gzip' length 12562 bytes (12 KB) ================================================== downloaded 12 KB -foundpkgs: mime, /tmp/RtmpbIvxKP/downloaded_packages/mime_0.12.tar.gz -files: /tmp/RtmpbIvxKP/downloaded_packages/mime_0.12.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpbIvxKP/downloaded_packages/mime_0.12.tar.gz'' +foundpkgs: mime, /tmp/RtmpdpBuRi/downloaded_packages/mime_0.12.tar.gz +files: /tmp/RtmpdpBuRi/downloaded_packages/mime_0.12.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdpBuRi/downloaded_packages/mime_0.12.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpbIvxKP/downloaded_packages’ + ‘/tmp/RtmpdpBuRi/downloaded_packages’ ================ -R PACKAGE INSTALLATION 133 / 240: minqa +R PACKAGE INSTALLATION 133 / 238: minqa ================ @@ -5605,26 +5870,26 @@ downloaded 52 KB The downloaded source packages are in - ‘/tmp/RtmpDkjpTv/downloaded_packages’ + ‘/tmp/RtmpYEOtZ9/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/minqa_1.2.4.tar.gz' Content type 'application/x-gzip' length 53548 bytes (52 KB) ================================================== downloaded 52 KB -foundpkgs: minqa, /tmp/RtmpDkjpTv/downloaded_packages/minqa_1.2.4.tar.gz -files: /tmp/RtmpDkjpTv/downloaded_packages/minqa_1.2.4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpDkjpTv/downloaded_packages/minqa_1.2.4.tar.gz'' +foundpkgs: minqa, /tmp/RtmpYEOtZ9/downloaded_packages/minqa_1.2.4.tar.gz +files: /tmp/RtmpYEOtZ9/downloaded_packages/minqa_1.2.4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpYEOtZ9/downloaded_packages/minqa_1.2.4.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpDkjpTv/downloaded_packages’ + ‘/tmp/RtmpYEOtZ9/downloaded_packages’ ================ -R PACKAGE INSTALLATION 134 / 240: mockery +R PACKAGE INSTALLATION 134 / 238: mockery ================ @@ -5638,26 +5903,26 @@ downloaded 19 KB The downloaded source packages are in - ‘/tmp/Rtmpj9dHb0/downloaded_packages’ + ‘/tmp/RtmpOkSoTv/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/mockery_0.4.2.tar.gz' Content type 'application/x-gzip' length 19837 bytes (19 KB) ================================================== downloaded 19 KB -foundpkgs: mockery, /tmp/Rtmpj9dHb0/downloaded_packages/mockery_0.4.2.tar.gz -files: /tmp/Rtmpj9dHb0/downloaded_packages/mockery_0.4.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpj9dHb0/downloaded_packages/mockery_0.4.2.tar.gz'' +foundpkgs: mockery, /tmp/RtmpOkSoTv/downloaded_packages/mockery_0.4.2.tar.gz +files: /tmp/RtmpOkSoTv/downloaded_packages/mockery_0.4.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpOkSoTv/downloaded_packages/mockery_0.4.2.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpj9dHb0/downloaded_packages’ + ‘/tmp/RtmpOkSoTv/downloaded_packages’ ================ -R PACKAGE INSTALLATION 135 / 240: modelr +R PACKAGE INSTALLATION 135 / 238: modelr ================ @@ -5671,26 +5936,26 @@ downloaded 118 KB The downloaded source packages are in - ‘/tmp/RtmpQdLxmC/downloaded_packages’ + ‘/tmp/Rtmp7Bw2R5/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/modelr_0.1.8.tar.gz' Content type 'application/x-gzip' length 121333 bytes (118 KB) ================================================== downloaded 118 KB -foundpkgs: modelr, /tmp/RtmpQdLxmC/downloaded_packages/modelr_0.1.8.tar.gz -files: /tmp/RtmpQdLxmC/downloaded_packages/modelr_0.1.8.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQdLxmC/downloaded_packages/modelr_0.1.8.tar.gz'' +foundpkgs: modelr, /tmp/Rtmp7Bw2R5/downloaded_packages/modelr_0.1.8.tar.gz +files: /tmp/Rtmp7Bw2R5/downloaded_packages/modelr_0.1.8.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7Bw2R5/downloaded_packages/modelr_0.1.8.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpQdLxmC/downloaded_packages’ + ‘/tmp/Rtmp7Bw2R5/downloaded_packages’ ================ -R PACKAGE INSTALLATION 136 / 240: munsell +R PACKAGE INSTALLATION 136 / 238: munsell ================ @@ -5704,26 +5969,26 @@ downloaded 178 KB The downloaded source packages are in - ‘/tmp/RtmpVCQ0n0/downloaded_packages’ + ‘/tmp/Rtmp4j3Onu/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/munsell_0.5.0.tar.gz' Content type 'application/x-gzip' length 182653 bytes (178 KB) ================================================== downloaded 178 KB -foundpkgs: munsell, /tmp/RtmpVCQ0n0/downloaded_packages/munsell_0.5.0.tar.gz -files: /tmp/RtmpVCQ0n0/downloaded_packages/munsell_0.5.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpVCQ0n0/downloaded_packages/munsell_0.5.0.tar.gz'' +foundpkgs: munsell, /tmp/Rtmp4j3Onu/downloaded_packages/munsell_0.5.0.tar.gz +files: /tmp/Rtmp4j3Onu/downloaded_packages/munsell_0.5.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp4j3Onu/downloaded_packages/munsell_0.5.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpVCQ0n0/downloaded_packages’ + ‘/tmp/Rtmp4j3Onu/downloaded_packages’ ================ -R PACKAGE INSTALLATION 137 / 240: mvtnorm +R PACKAGE INSTALLATION 137 / 238: mvtnorm ================ @@ -5737,26 +6002,26 @@ downloaded 162 KB The downloaded source packages are in - ‘/tmp/RtmpvlIdBx/downloaded_packages’ + ‘/tmp/RtmpjXWRZ5/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/mvtnorm_1.1-3.tar.gz' Content type 'application/x-gzip' length 166421 bytes (162 KB) ================================================== downloaded 162 KB -foundpkgs: mvtnorm, /tmp/RtmpvlIdBx/downloaded_packages/mvtnorm_1.1-3.tar.gz -files: /tmp/RtmpvlIdBx/downloaded_packages/mvtnorm_1.1-3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpvlIdBx/downloaded_packages/mvtnorm_1.1-3.tar.gz'' +foundpkgs: mvtnorm, /tmp/RtmpjXWRZ5/downloaded_packages/mvtnorm_1.1-3.tar.gz +files: /tmp/RtmpjXWRZ5/downloaded_packages/mvtnorm_1.1-3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpjXWRZ5/downloaded_packages/mvtnorm_1.1-3.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpvlIdBx/downloaded_packages’ + ‘/tmp/RtmpjXWRZ5/downloaded_packages’ ================ -R PACKAGE INSTALLATION 138 / 240: nloptr +R PACKAGE INSTALLATION 138 / 238: nloptr ================ @@ -5770,26 +6035,26 @@ downloaded 2.3 MB The downloaded source packages are in - ‘/tmp/Rtmp7h9yzF/downloaded_packages’ + ‘/tmp/RtmpgXoEIe/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/nloptr_1.2.2.3.tar.gz' Content type 'application/x-gzip' length 2456474 bytes (2.3 MB) ================================================== downloaded 2.3 MB -foundpkgs: nloptr, /tmp/Rtmp7h9yzF/downloaded_packages/nloptr_1.2.2.3.tar.gz -files: /tmp/Rtmp7h9yzF/downloaded_packages/nloptr_1.2.2.3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7h9yzF/downloaded_packages/nloptr_1.2.2.3.tar.gz'' +foundpkgs: nloptr, /tmp/RtmpgXoEIe/downloaded_packages/nloptr_1.2.2.3.tar.gz +files: /tmp/RtmpgXoEIe/downloaded_packages/nloptr_1.2.2.3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpgXoEIe/downloaded_packages/nloptr_1.2.2.3.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp7h9yzF/downloaded_packages’ + ‘/tmp/RtmpgXoEIe/downloaded_packages’ ================ -R PACKAGE INSTALLATION 139 / 240: numDeriv +R PACKAGE INSTALLATION 139 / 238: numDeriv ================ @@ -5803,26 +6068,26 @@ downloaded 74 KB The downloaded source packages are in - ‘/tmp/RtmpACivXt/downloaded_packages’ + ‘/tmp/Rtmp9lhkFp/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/numDeriv_2016.8-1.1.tar.gz' Content type 'application/x-gzip' length 76053 bytes (74 KB) ================================================== downloaded 74 KB -foundpkgs: numDeriv, /tmp/RtmpACivXt/downloaded_packages/numDeriv_2016.8-1.1.tar.gz -files: /tmp/RtmpACivXt/downloaded_packages/numDeriv_2016.8-1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpACivXt/downloaded_packages/numDeriv_2016.8-1.1.tar.gz'' +foundpkgs: numDeriv, /tmp/Rtmp9lhkFp/downloaded_packages/numDeriv_2016.8-1.1.tar.gz +files: /tmp/Rtmp9lhkFp/downloaded_packages/numDeriv_2016.8-1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp9lhkFp/downloaded_packages/numDeriv_2016.8-1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpACivXt/downloaded_packages’ + ‘/tmp/Rtmp9lhkFp/downloaded_packages’ ================ -R PACKAGE INSTALLATION 140 / 240: openssl +R PACKAGE INSTALLATION 140 / 238: openssl ================ @@ -5836,26 +6101,26 @@ downloaded 1.1 MB The downloaded source packages are in - ‘/tmp/RtmpI28zfU/downloaded_packages’ + ‘/tmp/RtmpjOeIj8/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/openssl_1.4.6.tar.gz' Content type 'application/x-gzip' length 1198268 bytes (1.1 MB) ================================================== downloaded 1.1 MB -foundpkgs: openssl, /tmp/RtmpI28zfU/downloaded_packages/openssl_1.4.6.tar.gz -files: /tmp/RtmpI28zfU/downloaded_packages/openssl_1.4.6.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpI28zfU/downloaded_packages/openssl_1.4.6.tar.gz'' +foundpkgs: openssl, /tmp/RtmpjOeIj8/downloaded_packages/openssl_1.4.6.tar.gz +files: /tmp/RtmpjOeIj8/downloaded_packages/openssl_1.4.6.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpjOeIj8/downloaded_packages/openssl_1.4.6.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpI28zfU/downloaded_packages’ + ‘/tmp/RtmpjOeIj8/downloaded_packages’ ================ -R PACKAGE INSTALLATION 141 / 240: openxlsx +R PACKAGE INSTALLATION 141 / 238: openxlsx ================ @@ -5869,26 +6134,26 @@ downloaded 1.3 MB The downloaded source packages are in - ‘/tmp/RtmpKI1W0R/downloaded_packages’ + ‘/tmp/RtmpfQFZxI/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/openxlsx_4.2.5.tar.gz' Content type 'application/x-gzip' length 1340903 bytes (1.3 MB) ================================================== downloaded 1.3 MB -foundpkgs: openxlsx, /tmp/RtmpKI1W0R/downloaded_packages/openxlsx_4.2.5.tar.gz -files: /tmp/RtmpKI1W0R/downloaded_packages/openxlsx_4.2.5.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpKI1W0R/downloaded_packages/openxlsx_4.2.5.tar.gz'' +foundpkgs: openxlsx, /tmp/RtmpfQFZxI/downloaded_packages/openxlsx_4.2.5.tar.gz +files: /tmp/RtmpfQFZxI/downloaded_packages/openxlsx_4.2.5.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpfQFZxI/downloaded_packages/openxlsx_4.2.5.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpKI1W0R/downloaded_packages’ + ‘/tmp/RtmpfQFZxI/downloaded_packages’ ================ -R PACKAGE INSTALLATION 142 / 240: parallelly +R PACKAGE INSTALLATION 142 / 238: parallelly ================ @@ -5902,26 +6167,26 @@ downloaded 113 KB The downloaded source packages are in - ‘/tmp/Rtmpqs23j0/downloaded_packages’ + ‘/tmp/RtmpDQamZg/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/parallelly_1.30.0.tar.gz' Content type 'application/x-gzip' length 115888 bytes (113 KB) ================================================== downloaded 113 KB -foundpkgs: parallelly, /tmp/Rtmpqs23j0/downloaded_packages/parallelly_1.30.0.tar.gz -files: /tmp/Rtmpqs23j0/downloaded_packages/parallelly_1.30.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpqs23j0/downloaded_packages/parallelly_1.30.0.tar.gz'' +foundpkgs: parallelly, /tmp/RtmpDQamZg/downloaded_packages/parallelly_1.30.0.tar.gz +files: /tmp/RtmpDQamZg/downloaded_packages/parallelly_1.30.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpDQamZg/downloaded_packages/parallelly_1.30.0.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpqs23j0/downloaded_packages’ + ‘/tmp/RtmpDQamZg/downloaded_packages’ ================ -R PACKAGE INSTALLATION 143 / 240: pbkrtest +R PACKAGE INSTALLATION 143 / 238: pbkrtest ================ @@ -5935,26 +6200,26 @@ downloaded 240 KB The downloaded source packages are in - ‘/tmp/RtmpTWqbcx/downloaded_packages’ + ‘/tmp/Rtmpatb03j/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/pbkrtest_0.5.1.tar.gz' Content type 'application/x-gzip' length 246327 bytes (240 KB) ================================================== downloaded 240 KB -foundpkgs: pbkrtest, /tmp/RtmpTWqbcx/downloaded_packages/pbkrtest_0.5.1.tar.gz -files: /tmp/RtmpTWqbcx/downloaded_packages/pbkrtest_0.5.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTWqbcx/downloaded_packages/pbkrtest_0.5.1.tar.gz'' +foundpkgs: pbkrtest, /tmp/Rtmpatb03j/downloaded_packages/pbkrtest_0.5.1.tar.gz +files: /tmp/Rtmpatb03j/downloaded_packages/pbkrtest_0.5.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpatb03j/downloaded_packages/pbkrtest_0.5.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpTWqbcx/downloaded_packages’ + ‘/tmp/Rtmpatb03j/downloaded_packages’ ================ -R PACKAGE INSTALLATION 144 / 240: pheatmap +R PACKAGE INSTALLATION 144 / 238: pheatmap ================ @@ -5968,26 +6233,26 @@ downloaded 14 KB The downloaded source packages are in - ‘/tmp/Rtmp8CVi7A/downloaded_packages’ + ‘/tmp/RtmpVRv3OK/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/pheatmap_1.0.12.tar.gz' Content type 'application/x-gzip' length 15071 bytes (14 KB) ================================================== downloaded 14 KB -foundpkgs: pheatmap, /tmp/Rtmp8CVi7A/downloaded_packages/pheatmap_1.0.12.tar.gz -files: /tmp/Rtmp8CVi7A/downloaded_packages/pheatmap_1.0.12.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8CVi7A/downloaded_packages/pheatmap_1.0.12.tar.gz'' +foundpkgs: pheatmap, /tmp/RtmpVRv3OK/downloaded_packages/pheatmap_1.0.12.tar.gz +files: /tmp/RtmpVRv3OK/downloaded_packages/pheatmap_1.0.12.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpVRv3OK/downloaded_packages/pheatmap_1.0.12.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp8CVi7A/downloaded_packages’ + ‘/tmp/RtmpVRv3OK/downloaded_packages’ ================ -R PACKAGE INSTALLATION 145 / 240: pillar +R PACKAGE INSTALLATION 145 / 238: pillar ================ @@ -6001,26 +6266,26 @@ downloaded 1.0 MB The downloaded source packages are in - ‘/tmp/RtmpSMq5b7/downloaded_packages’ + ‘/tmp/RtmpKXE7l4/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/pillar_1.6.4.tar.gz' Content type 'application/x-gzip' length 1097062 bytes (1.0 MB) ================================================== downloaded 1.0 MB -foundpkgs: pillar, /tmp/RtmpSMq5b7/downloaded_packages/pillar_1.6.4.tar.gz -files: /tmp/RtmpSMq5b7/downloaded_packages/pillar_1.6.4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpSMq5b7/downloaded_packages/pillar_1.6.4.tar.gz'' +foundpkgs: pillar, /tmp/RtmpKXE7l4/downloaded_packages/pillar_1.6.4.tar.gz +files: /tmp/RtmpKXE7l4/downloaded_packages/pillar_1.6.4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpKXE7l4/downloaded_packages/pillar_1.6.4.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpSMq5b7/downloaded_packages’ + ‘/tmp/RtmpKXE7l4/downloaded_packages’ ================ -R PACKAGE INSTALLATION 146 / 240: pkgbuild +R PACKAGE INSTALLATION 146 / 238: pkgbuild ================ @@ -6034,26 +6299,26 @@ downloaded 31 KB The downloaded source packages are in - ‘/tmp/Rtmp1UcMJ2/downloaded_packages’ + ‘/tmp/Rtmp9EecK9/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/pkgbuild_1.3.1.tar.gz' Content type 'application/x-gzip' length 31937 bytes (31 KB) ================================================== downloaded 31 KB -foundpkgs: pkgbuild, /tmp/Rtmp1UcMJ2/downloaded_packages/pkgbuild_1.3.1.tar.gz -files: /tmp/Rtmp1UcMJ2/downloaded_packages/pkgbuild_1.3.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1UcMJ2/downloaded_packages/pkgbuild_1.3.1.tar.gz'' +foundpkgs: pkgbuild, /tmp/Rtmp9EecK9/downloaded_packages/pkgbuild_1.3.1.tar.gz +files: /tmp/Rtmp9EecK9/downloaded_packages/pkgbuild_1.3.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp9EecK9/downloaded_packages/pkgbuild_1.3.1.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp1UcMJ2/downloaded_packages’ + ‘/tmp/Rtmp9EecK9/downloaded_packages’ ================ -R PACKAGE INSTALLATION 147 / 240: pkgconfig +R PACKAGE INSTALLATION 147 / 238: pkgconfig ================ @@ -6067,26 +6332,26 @@ downloaded 6080 bytes The downloaded source packages are in - ‘/tmp/Rtmp2WHx05/downloaded_packages’ + ‘/tmp/RtmpuW2dFJ/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/pkgconfig_2.0.3.tar.gz' Content type 'application/x-gzip' length 6080 bytes ================================================== downloaded 6080 bytes -foundpkgs: pkgconfig, /tmp/Rtmp2WHx05/downloaded_packages/pkgconfig_2.0.3.tar.gz -files: /tmp/Rtmp2WHx05/downloaded_packages/pkgconfig_2.0.3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp2WHx05/downloaded_packages/pkgconfig_2.0.3.tar.gz'' +foundpkgs: pkgconfig, /tmp/RtmpuW2dFJ/downloaded_packages/pkgconfig_2.0.3.tar.gz +files: /tmp/RtmpuW2dFJ/downloaded_packages/pkgconfig_2.0.3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpuW2dFJ/downloaded_packages/pkgconfig_2.0.3.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp2WHx05/downloaded_packages’ + ‘/tmp/RtmpuW2dFJ/downloaded_packages’ ================ -R PACKAGE INSTALLATION 148 / 240: pkgload +R PACKAGE INSTALLATION 148 / 238: pkgload ================ @@ -6100,26 +6365,26 @@ downloaded 61 KB The downloaded source packages are in - ‘/tmp/Rtmp9vTozd/downloaded_packages’ + ‘/tmp/RtmpGDXoAn/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/pkgload_1.2.4.tar.gz' Content type 'application/x-gzip' length 62827 bytes (61 KB) ================================================== downloaded 61 KB -foundpkgs: pkgload, /tmp/Rtmp9vTozd/downloaded_packages/pkgload_1.2.4.tar.gz -files: /tmp/Rtmp9vTozd/downloaded_packages/pkgload_1.2.4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp9vTozd/downloaded_packages/pkgload_1.2.4.tar.gz'' +foundpkgs: pkgload, /tmp/RtmpGDXoAn/downloaded_packages/pkgload_1.2.4.tar.gz +files: /tmp/RtmpGDXoAn/downloaded_packages/pkgload_1.2.4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpGDXoAn/downloaded_packages/pkgload_1.2.4.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp9vTozd/downloaded_packages’ + ‘/tmp/RtmpGDXoAn/downloaded_packages’ ================ -R PACKAGE INSTALLATION 149 / 240: plogr +R PACKAGE INSTALLATION 149 / 238: plogr ================ @@ -6133,26 +6398,26 @@ downloaded 7795 bytes The downloaded source packages are in - ‘/tmp/Rtmpy5W4IP/downloaded_packages’ + ‘/tmp/Rtmp1GBAFb/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/plogr_0.2.0.tar.gz' Content type 'application/x-gzip' length 7795 bytes ================================================== downloaded 7795 bytes -foundpkgs: plogr, /tmp/Rtmpy5W4IP/downloaded_packages/plogr_0.2.0.tar.gz -files: /tmp/Rtmpy5W4IP/downloaded_packages/plogr_0.2.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpy5W4IP/downloaded_packages/plogr_0.2.0.tar.gz'' +foundpkgs: plogr, /tmp/Rtmp1GBAFb/downloaded_packages/plogr_0.2.0.tar.gz +files: /tmp/Rtmp1GBAFb/downloaded_packages/plogr_0.2.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1GBAFb/downloaded_packages/plogr_0.2.0.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpy5W4IP/downloaded_packages’ + ‘/tmp/Rtmp1GBAFb/downloaded_packages’ ================ -R PACKAGE INSTALLATION 150 / 240: plyr +R PACKAGE INSTALLATION 150 / 238: plyr ================ @@ -6166,26 +6431,26 @@ downloaded 391 KB The downloaded source packages are in - ‘/tmp/Rtmpz135af/downloaded_packages’ + ‘/tmp/Rtmpibksd4/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/plyr_1.8.6.tar.gz' Content type 'application/x-gzip' length 401191 bytes (391 KB) ================================================== downloaded 391 KB -foundpkgs: plyr, /tmp/Rtmpz135af/downloaded_packages/plyr_1.8.6.tar.gz -files: /tmp/Rtmpz135af/downloaded_packages/plyr_1.8.6.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz135af/downloaded_packages/plyr_1.8.6.tar.gz'' +foundpkgs: plyr, /tmp/Rtmpibksd4/downloaded_packages/plyr_1.8.6.tar.gz +files: /tmp/Rtmpibksd4/downloaded_packages/plyr_1.8.6.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpibksd4/downloaded_packages/plyr_1.8.6.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpz135af/downloaded_packages’ + ‘/tmp/Rtmpibksd4/downloaded_packages’ ================ -R PACKAGE INSTALLATION 151 / 240: png +R PACKAGE INSTALLATION 151 / 238: png ================ @@ -6199,26 +6464,26 @@ downloaded 24 KB The downloaded source packages are in - ‘/tmp/Rtmp0I8kHY/downloaded_packages’ + ‘/tmp/RtmpQBZWqs/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/png_0.1-7.tar.gz' Content type 'application/x-gzip' length 24990 bytes (24 KB) ================================================== downloaded 24 KB -foundpkgs: png, /tmp/Rtmp0I8kHY/downloaded_packages/png_0.1-7.tar.gz -files: /tmp/Rtmp0I8kHY/downloaded_packages/png_0.1-7.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp0I8kHY/downloaded_packages/png_0.1-7.tar.gz'' +foundpkgs: png, /tmp/RtmpQBZWqs/downloaded_packages/png_0.1-7.tar.gz +files: /tmp/RtmpQBZWqs/downloaded_packages/png_0.1-7.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQBZWqs/downloaded_packages/png_0.1-7.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp0I8kHY/downloaded_packages’ + ‘/tmp/RtmpQBZWqs/downloaded_packages’ ================ -R PACKAGE INSTALLATION 152 / 240: praise +R PACKAGE INSTALLATION 152 / 238: praise ================ @@ -6232,26 +6497,26 @@ downloaded 6100 bytes The downloaded source packages are in - ‘/tmp/Rtmp3hpp81/downloaded_packages’ + ‘/tmp/Rtmp9Mf4jA/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/praise_1.0.0.tar.gz' Content type 'application/x-gzip' length 6100 bytes ================================================== downloaded 6100 bytes -foundpkgs: praise, /tmp/Rtmp3hpp81/downloaded_packages/praise_1.0.0.tar.gz -files: /tmp/Rtmp3hpp81/downloaded_packages/praise_1.0.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp3hpp81/downloaded_packages/praise_1.0.0.tar.gz'' +foundpkgs: praise, /tmp/Rtmp9Mf4jA/downloaded_packages/praise_1.0.0.tar.gz +files: /tmp/Rtmp9Mf4jA/downloaded_packages/praise_1.0.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp9Mf4jA/downloaded_packages/praise_1.0.0.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp3hpp81/downloaded_packages’ + ‘/tmp/Rtmp9Mf4jA/downloaded_packages’ ================ -R PACKAGE INSTALLATION 153 / 240: prettyGraphs +R PACKAGE INSTALLATION 153 / 238: prettyGraphs ================ @@ -6265,26 +6530,26 @@ downloaded 16 KB The downloaded source packages are in - ‘/tmp/Rtmpzxy0Cj/downloaded_packages’ + ‘/tmp/RtmpKXanMb/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/prettyGraphs_2.1.6.tar.gz' Content type 'application/x-gzip' length 16893 bytes (16 KB) ================================================== downloaded 16 KB -foundpkgs: prettyGraphs, /tmp/Rtmpzxy0Cj/downloaded_packages/prettyGraphs_2.1.6.tar.gz -files: /tmp/Rtmpzxy0Cj/downloaded_packages/prettyGraphs_2.1.6.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpzxy0Cj/downloaded_packages/prettyGraphs_2.1.6.tar.gz'' +foundpkgs: prettyGraphs, /tmp/RtmpKXanMb/downloaded_packages/prettyGraphs_2.1.6.tar.gz +files: /tmp/RtmpKXanMb/downloaded_packages/prettyGraphs_2.1.6.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpKXanMb/downloaded_packages/prettyGraphs_2.1.6.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpzxy0Cj/downloaded_packages’ + ‘/tmp/RtmpKXanMb/downloaded_packages’ ================ -R PACKAGE INSTALLATION 154 / 240: prettyunits +R PACKAGE INSTALLATION 154 / 238: prettyunits ================ @@ -6298,26 +6563,26 @@ downloaded 10 KB The downloaded source packages are in - ‘/tmp/RtmpjkRBC6/downloaded_packages’ + ‘/tmp/RtmpoZOlM4/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/prettyunits_1.1.1.tar.gz' Content type 'application/x-gzip' length 10366 bytes (10 KB) ================================================== downloaded 10 KB -foundpkgs: prettyunits, /tmp/RtmpjkRBC6/downloaded_packages/prettyunits_1.1.1.tar.gz -files: /tmp/RtmpjkRBC6/downloaded_packages/prettyunits_1.1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpjkRBC6/downloaded_packages/prettyunits_1.1.1.tar.gz'' +foundpkgs: prettyunits, /tmp/RtmpoZOlM4/downloaded_packages/prettyunits_1.1.1.tar.gz +files: /tmp/RtmpoZOlM4/downloaded_packages/prettyunits_1.1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpoZOlM4/downloaded_packages/prettyunits_1.1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpjkRBC6/downloaded_packages’ + ‘/tmp/RtmpoZOlM4/downloaded_packages’ ================ -R PACKAGE INSTALLATION 155 / 240: processx +R PACKAGE INSTALLATION 155 / 238: processx ================ @@ -6331,26 +6596,26 @@ downloaded 138 KB The downloaded source packages are in - ‘/tmp/RtmpcTxiYR/downloaded_packages’ + ‘/tmp/Rtmp2B1GUp/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/processx_3.5.2.tar.gz' Content type 'application/x-gzip' length 141424 bytes (138 KB) ================================================== downloaded 138 KB -foundpkgs: processx, /tmp/RtmpcTxiYR/downloaded_packages/processx_3.5.2.tar.gz -files: /tmp/RtmpcTxiYR/downloaded_packages/processx_3.5.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpcTxiYR/downloaded_packages/processx_3.5.2.tar.gz'' +foundpkgs: processx, /tmp/Rtmp2B1GUp/downloaded_packages/processx_3.5.2.tar.gz +files: /tmp/Rtmp2B1GUp/downloaded_packages/processx_3.5.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp2B1GUp/downloaded_packages/processx_3.5.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpcTxiYR/downloaded_packages’ + ‘/tmp/Rtmp2B1GUp/downloaded_packages’ ================ -R PACKAGE INSTALLATION 156 / 240: progress +R PACKAGE INSTALLATION 156 / 238: progress ================ @@ -6364,26 +6629,26 @@ downloaded 28 KB The downloaded source packages are in - ‘/tmp/RtmpijJILh/downloaded_packages’ + ‘/tmp/Rtmpsj69xy/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/progress_1.2.2.tar.gz' Content type 'application/x-gzip' length 29506 bytes (28 KB) ================================================== downloaded 28 KB -foundpkgs: progress, /tmp/RtmpijJILh/downloaded_packages/progress_1.2.2.tar.gz -files: /tmp/RtmpijJILh/downloaded_packages/progress_1.2.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpijJILh/downloaded_packages/progress_1.2.2.tar.gz'' +foundpkgs: progress, /tmp/Rtmpsj69xy/downloaded_packages/progress_1.2.2.tar.gz +files: /tmp/Rtmpsj69xy/downloaded_packages/progress_1.2.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpsj69xy/downloaded_packages/progress_1.2.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpijJILh/downloaded_packages’ + ‘/tmp/Rtmpsj69xy/downloaded_packages’ ================ -R PACKAGE INSTALLATION 157 / 240: promises +R PACKAGE INSTALLATION 157 / 238: promises ================ @@ -6397,26 +6662,26 @@ downloaded 3.0 MB The downloaded source packages are in - ‘/tmp/RtmpxbvP3U/downloaded_packages’ + ‘/tmp/RtmpR2giBH/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/promises_1.2.0.1.tar.gz' Content type 'application/x-gzip' length 3120504 bytes (3.0 MB) ================================================== downloaded 3.0 MB -foundpkgs: promises, /tmp/RtmpxbvP3U/downloaded_packages/promises_1.2.0.1.tar.gz -files: /tmp/RtmpxbvP3U/downloaded_packages/promises_1.2.0.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpxbvP3U/downloaded_packages/promises_1.2.0.1.tar.gz'' +foundpkgs: promises, /tmp/RtmpR2giBH/downloaded_packages/promises_1.2.0.1.tar.gz +files: /tmp/RtmpR2giBH/downloaded_packages/promises_1.2.0.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpR2giBH/downloaded_packages/promises_1.2.0.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpxbvP3U/downloaded_packages’ + ‘/tmp/RtmpR2giBH/downloaded_packages’ ================ -R PACKAGE INSTALLATION 158 / 240: ps +R PACKAGE INSTALLATION 158 / 238: ps ================ @@ -6430,26 +6695,26 @@ downloaded 116 KB The downloaded source packages are in - ‘/tmp/RtmpDHtfCr/downloaded_packages’ + ‘/tmp/RtmprhxnlT/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/ps_1.6.0.tar.gz' Content type 'application/x-gzip' length 119670 bytes (116 KB) ================================================== downloaded 116 KB -foundpkgs: ps, /tmp/RtmpDHtfCr/downloaded_packages/ps_1.6.0.tar.gz -files: /tmp/RtmpDHtfCr/downloaded_packages/ps_1.6.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpDHtfCr/downloaded_packages/ps_1.6.0.tar.gz'' +foundpkgs: ps, /tmp/RtmprhxnlT/downloaded_packages/ps_1.6.0.tar.gz +files: /tmp/RtmprhxnlT/downloaded_packages/ps_1.6.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmprhxnlT/downloaded_packages/ps_1.6.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpDHtfCr/downloaded_packages’ + ‘/tmp/RtmprhxnlT/downloaded_packages’ ================ -R PACKAGE INSTALLATION 159 / 240: pspearman +R PACKAGE INSTALLATION 159 / 238: pspearman ================ @@ -6463,26 +6728,26 @@ downloaded 41 KB The downloaded source packages are in - ‘/tmp/RtmpyshT2r/downloaded_packages’ + ‘/tmp/RtmpIVw7oo/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/pspearman_0.3-0.tar.gz' Content type 'application/x-gzip' length 42574 bytes (41 KB) ================================================== downloaded 41 KB -foundpkgs: pspearman, /tmp/RtmpyshT2r/downloaded_packages/pspearman_0.3-0.tar.gz -files: /tmp/RtmpyshT2r/downloaded_packages/pspearman_0.3-0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpyshT2r/downloaded_packages/pspearman_0.3-0.tar.gz'' +foundpkgs: pspearman, /tmp/RtmpIVw7oo/downloaded_packages/pspearman_0.3-0.tar.gz +files: /tmp/RtmpIVw7oo/downloaded_packages/pspearman_0.3-0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpIVw7oo/downloaded_packages/pspearman_0.3-0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpyshT2r/downloaded_packages’ + ‘/tmp/RtmpIVw7oo/downloaded_packages’ ================ -R PACKAGE INSTALLATION 160 / 240: purrr +R PACKAGE INSTALLATION 160 / 238: purrr ================ @@ -6496,26 +6761,26 @@ downloaded 366 KB The downloaded source packages are in - ‘/tmp/RtmpcGwPoh/downloaded_packages’ + ‘/tmp/Rtmp6b02xg/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/purrr_0.3.4.tar.gz' Content type 'application/x-gzip' length 375062 bytes (366 KB) ================================================== downloaded 366 KB -foundpkgs: purrr, /tmp/RtmpcGwPoh/downloaded_packages/purrr_0.3.4.tar.gz -files: /tmp/RtmpcGwPoh/downloaded_packages/purrr_0.3.4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpcGwPoh/downloaded_packages/purrr_0.3.4.tar.gz'' +foundpkgs: purrr, /tmp/Rtmp6b02xg/downloaded_packages/purrr_0.3.4.tar.gz +files: /tmp/Rtmp6b02xg/downloaded_packages/purrr_0.3.4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6b02xg/downloaded_packages/purrr_0.3.4.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpcGwPoh/downloaded_packages’ + ‘/tmp/Rtmp6b02xg/downloaded_packages’ ================ -R PACKAGE INSTALLATION 161 / 240: QDNAseq +R PACKAGE INSTALLATION 161 / 238: QDNAseq ================ @@ -6537,7 +6802,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 162 / 240: quantreg +R PACKAGE INSTALLATION 162 / 238: quantreg ================ @@ -6551,26 +6816,26 @@ downloaded 992 KB The downloaded source packages are in - ‘/tmp/Rtmpp1AV6Y/downloaded_packages’ + ‘/tmp/RtmpdFd6CZ/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/quantreg_5.86.tar.gz' Content type 'application/x-gzip' length 1016802 bytes (992 KB) ================================================== downloaded 992 KB -foundpkgs: quantreg, /tmp/Rtmpp1AV6Y/downloaded_packages/quantreg_5.86.tar.gz -files: /tmp/Rtmpp1AV6Y/downloaded_packages/quantreg_5.86.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpp1AV6Y/downloaded_packages/quantreg_5.86.tar.gz'' +foundpkgs: quantreg, /tmp/RtmpdFd6CZ/downloaded_packages/quantreg_5.86.tar.gz +files: /tmp/RtmpdFd6CZ/downloaded_packages/quantreg_5.86.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdFd6CZ/downloaded_packages/quantreg_5.86.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpp1AV6Y/downloaded_packages’ + ‘/tmp/RtmpdFd6CZ/downloaded_packages’ ================ -R PACKAGE INSTALLATION 163 / 240: R.methodsS3 +R PACKAGE INSTALLATION 163 / 238: R.methodsS3 ================ @@ -6584,26 +6849,26 @@ downloaded 23 KB The downloaded source packages are in - ‘/tmp/RtmpyDUQ94/downloaded_packages’ + ‘/tmp/Rtmpb9PUPs/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/R.methodsS3_1.8.1.tar.gz' Content type 'application/x-gzip' length 23717 bytes (23 KB) ================================================== downloaded 23 KB -foundpkgs: R.methodsS3, /tmp/RtmpyDUQ94/downloaded_packages/R.methodsS3_1.8.1.tar.gz -files: /tmp/RtmpyDUQ94/downloaded_packages/R.methodsS3_1.8.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpyDUQ94/downloaded_packages/R.methodsS3_1.8.1.tar.gz'' +foundpkgs: R.methodsS3, /tmp/Rtmpb9PUPs/downloaded_packages/R.methodsS3_1.8.1.tar.gz +files: /tmp/Rtmpb9PUPs/downloaded_packages/R.methodsS3_1.8.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpb9PUPs/downloaded_packages/R.methodsS3_1.8.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpyDUQ94/downloaded_packages’ + ‘/tmp/Rtmpb9PUPs/downloaded_packages’ ================ -R PACKAGE INSTALLATION 164 / 240: R.oo +R PACKAGE INSTALLATION 164 / 238: R.oo ================ @@ -6617,26 +6882,26 @@ downloaded 374 KB The downloaded source packages are in - ‘/tmp/Rtmp9Pux2a/downloaded_packages’ + ‘/tmp/RtmpcvHT9v/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/R.oo_1.24.0.tar.gz' Content type 'application/x-gzip' length 383514 bytes (374 KB) ================================================== downloaded 374 KB -foundpkgs: R.oo, /tmp/Rtmp9Pux2a/downloaded_packages/R.oo_1.24.0.tar.gz -files: /tmp/Rtmp9Pux2a/downloaded_packages/R.oo_1.24.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp9Pux2a/downloaded_packages/R.oo_1.24.0.tar.gz'' +foundpkgs: R.oo, /tmp/RtmpcvHT9v/downloaded_packages/R.oo_1.24.0.tar.gz +files: /tmp/RtmpcvHT9v/downloaded_packages/R.oo_1.24.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpcvHT9v/downloaded_packages/R.oo_1.24.0.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp9Pux2a/downloaded_packages’ + ‘/tmp/RtmpcvHT9v/downloaded_packages’ ================ -R PACKAGE INSTALLATION 165 / 240: R.utils +R PACKAGE INSTALLATION 165 / 238: R.utils ================ @@ -6650,26 +6915,26 @@ downloaded 354 KB The downloaded source packages are in - ‘/tmp/RtmpRJ5cvD/downloaded_packages’ + ‘/tmp/RtmpsG3nnN/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/R.utils_2.11.0.tar.gz' Content type 'application/x-gzip' length 362860 bytes (354 KB) ================================================== downloaded 354 KB -foundpkgs: R.utils, /tmp/RtmpRJ5cvD/downloaded_packages/R.utils_2.11.0.tar.gz -files: /tmp/RtmpRJ5cvD/downloaded_packages/R.utils_2.11.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpRJ5cvD/downloaded_packages/R.utils_2.11.0.tar.gz'' +foundpkgs: R.utils, /tmp/RtmpsG3nnN/downloaded_packages/R.utils_2.11.0.tar.gz +files: /tmp/RtmpsG3nnN/downloaded_packages/R.utils_2.11.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsG3nnN/downloaded_packages/R.utils_2.11.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpRJ5cvD/downloaded_packages’ + ‘/tmp/RtmpsG3nnN/downloaded_packages’ ================ -R PACKAGE INSTALLATION 166 / 240: R6 +R PACKAGE INSTALLATION 166 / 238: R6 ================ @@ -6683,26 +6948,26 @@ downloaded 61 KB The downloaded source packages are in - ‘/tmp/RtmpbwpCzK/downloaded_packages’ + ‘/tmp/RtmpxJGH5n/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/R6_2.5.1.tar.gz' Content type 'application/x-gzip' length 63422 bytes (61 KB) ================================================== downloaded 61 KB -foundpkgs: R6, /tmp/RtmpbwpCzK/downloaded_packages/R6_2.5.1.tar.gz -files: /tmp/RtmpbwpCzK/downloaded_packages/R6_2.5.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpbwpCzK/downloaded_packages/R6_2.5.1.tar.gz'' +foundpkgs: R6, /tmp/RtmpxJGH5n/downloaded_packages/R6_2.5.1.tar.gz +files: /tmp/RtmpxJGH5n/downloaded_packages/R6_2.5.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpxJGH5n/downloaded_packages/R6_2.5.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpbwpCzK/downloaded_packages’ + ‘/tmp/RtmpxJGH5n/downloaded_packages’ ================ -R PACKAGE INSTALLATION 167 / 240: rappdirs +R PACKAGE INSTALLATION 167 / 238: rappdirs ================ @@ -6716,26 +6981,26 @@ downloaded 12 KB The downloaded source packages are in - ‘/tmp/RtmpFL6zke/downloaded_packages’ + ‘/tmp/Rtmpj1w47T/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/rappdirs_0.3.3.tar.gz' Content type 'application/x-gzip' length 12288 bytes (12 KB) ================================================== downloaded 12 KB -foundpkgs: rappdirs, /tmp/RtmpFL6zke/downloaded_packages/rappdirs_0.3.3.tar.gz -files: /tmp/RtmpFL6zke/downloaded_packages/rappdirs_0.3.3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpFL6zke/downloaded_packages/rappdirs_0.3.3.tar.gz'' +foundpkgs: rappdirs, /tmp/Rtmpj1w47T/downloaded_packages/rappdirs_0.3.3.tar.gz +files: /tmp/Rtmpj1w47T/downloaded_packages/rappdirs_0.3.3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpj1w47T/downloaded_packages/rappdirs_0.3.3.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpFL6zke/downloaded_packages’ + ‘/tmp/Rtmpj1w47T/downloaded_packages’ ================ -R PACKAGE INSTALLATION 168 / 240: rcmdcheck +R PACKAGE INSTALLATION 168 / 238: rcmdcheck ================ @@ -6749,26 +7014,26 @@ downloaded 71 KB The downloaded source packages are in - ‘/tmp/Rtmp5NK8yE/downloaded_packages’ + ‘/tmp/RtmpfvZdG8/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/rcmdcheck_1.4.0.tar.gz' Content type 'application/x-gzip' length 73522 bytes (71 KB) ================================================== downloaded 71 KB -foundpkgs: rcmdcheck, /tmp/Rtmp5NK8yE/downloaded_packages/rcmdcheck_1.4.0.tar.gz -files: /tmp/Rtmp5NK8yE/downloaded_packages/rcmdcheck_1.4.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp5NK8yE/downloaded_packages/rcmdcheck_1.4.0.tar.gz'' +foundpkgs: rcmdcheck, /tmp/RtmpfvZdG8/downloaded_packages/rcmdcheck_1.4.0.tar.gz +files: /tmp/RtmpfvZdG8/downloaded_packages/rcmdcheck_1.4.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpfvZdG8/downloaded_packages/rcmdcheck_1.4.0.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp5NK8yE/downloaded_packages’ + ‘/tmp/RtmpfvZdG8/downloaded_packages’ ================ -R PACKAGE INSTALLATION 169 / 240: RColorBrewer +R PACKAGE INSTALLATION 169 / 238: RColorBrewer ================ @@ -6782,26 +7047,26 @@ downloaded 11 KB The downloaded source packages are in - ‘/tmp/RtmpU2apzH/downloaded_packages’ + ‘/tmp/Rtmpwr24Yo/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/RColorBrewer_1.1-2.tar.gz' Content type 'application/x-gzip' length 11532 bytes (11 KB) ================================================== downloaded 11 KB -foundpkgs: RColorBrewer, /tmp/RtmpU2apzH/downloaded_packages/RColorBrewer_1.1-2.tar.gz -files: /tmp/RtmpU2apzH/downloaded_packages/RColorBrewer_1.1-2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpU2apzH/downloaded_packages/RColorBrewer_1.1-2.tar.gz'' +foundpkgs: RColorBrewer, /tmp/Rtmpwr24Yo/downloaded_packages/RColorBrewer_1.1-2.tar.gz +files: /tmp/Rtmpwr24Yo/downloaded_packages/RColorBrewer_1.1-2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpwr24Yo/downloaded_packages/RColorBrewer_1.1-2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpU2apzH/downloaded_packages’ + ‘/tmp/Rtmpwr24Yo/downloaded_packages’ ================ -R PACKAGE INSTALLATION 170 / 240: Rcpp +R PACKAGE INSTALLATION 170 / 238: Rcpp ================ @@ -6815,26 +7080,26 @@ downloaded 2.8 MB The downloaded source packages are in - ‘/tmp/Rtmpz36ZUT/downloaded_packages’ + ‘/tmp/RtmpsXwYLm/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/Rcpp_1.0.7.tar.gz' Content type 'application/x-gzip' length 2941808 bytes (2.8 MB) ================================================== downloaded 2.8 MB -foundpkgs: Rcpp, /tmp/Rtmpz36ZUT/downloaded_packages/Rcpp_1.0.7.tar.gz -files: /tmp/Rtmpz36ZUT/downloaded_packages/Rcpp_1.0.7.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz36ZUT/downloaded_packages/Rcpp_1.0.7.tar.gz'' +foundpkgs: Rcpp, /tmp/RtmpsXwYLm/downloaded_packages/Rcpp_1.0.7.tar.gz +files: /tmp/RtmpsXwYLm/downloaded_packages/Rcpp_1.0.7.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsXwYLm/downloaded_packages/Rcpp_1.0.7.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpz36ZUT/downloaded_packages’ + ‘/tmp/RtmpsXwYLm/downloaded_packages’ ================ -R PACKAGE INSTALLATION 171 / 240: RcppArmadillo +R PACKAGE INSTALLATION 171 / 238: RcppArmadillo ================ @@ -6848,26 +7113,26 @@ downloaded 1.3 MB The downloaded source packages are in - ‘/tmp/RtmpoxCcTv/downloaded_packages’ + ‘/tmp/RtmpTIEvfn/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/RcppArmadillo_0.10.7.5.0.tar.gz' Content type 'application/x-gzip' length 1362368 bytes (1.3 MB) ================================================== downloaded 1.3 MB -foundpkgs: RcppArmadillo, /tmp/RtmpoxCcTv/downloaded_packages/RcppArmadillo_0.10.7.5.0.tar.gz -files: /tmp/RtmpoxCcTv/downloaded_packages/RcppArmadillo_0.10.7.5.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpoxCcTv/downloaded_packages/RcppArmadillo_0.10.7.5.0.tar.gz'' +foundpkgs: RcppArmadillo, /tmp/RtmpTIEvfn/downloaded_packages/RcppArmadillo_0.10.7.5.0.tar.gz +files: /tmp/RtmpTIEvfn/downloaded_packages/RcppArmadillo_0.10.7.5.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTIEvfn/downloaded_packages/RcppArmadillo_0.10.7.5.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpoxCcTv/downloaded_packages’ + ‘/tmp/RtmpTIEvfn/downloaded_packages’ ================ -R PACKAGE INSTALLATION 172 / 240: RcppEigen +R PACKAGE INSTALLATION 172 / 238: RcppEigen ================ @@ -6881,26 +7146,26 @@ downloaded 1.6 MB The downloaded source packages are in - ‘/tmp/RtmptvRazh/downloaded_packages’ + ‘/tmp/RtmprCABVB/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/RcppEigen_0.3.3.9.1.tar.gz' Content type 'application/x-gzip' length 1633360 bytes (1.6 MB) ================================================== downloaded 1.6 MB -foundpkgs: RcppEigen, /tmp/RtmptvRazh/downloaded_packages/RcppEigen_0.3.3.9.1.tar.gz -files: /tmp/RtmptvRazh/downloaded_packages/RcppEigen_0.3.3.9.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmptvRazh/downloaded_packages/RcppEigen_0.3.3.9.1.tar.gz'' +foundpkgs: RcppEigen, /tmp/RtmprCABVB/downloaded_packages/RcppEigen_0.3.3.9.1.tar.gz +files: /tmp/RtmprCABVB/downloaded_packages/RcppEigen_0.3.3.9.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmprCABVB/downloaded_packages/RcppEigen_0.3.3.9.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmptvRazh/downloaded_packages’ + ‘/tmp/RtmprCABVB/downloaded_packages’ ================ -R PACKAGE INSTALLATION 173 / 240: RCurl +R PACKAGE INSTALLATION 173 / 238: RCurl ================ @@ -6914,26 +7179,26 @@ downloaded 714 KB The downloaded source packages are in - ‘/tmp/RtmpxORs1h/downloaded_packages’ + ‘/tmp/Rtmpak2ptZ/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/RCurl_1.98-1.5.tar.gz' Content type 'application/x-gzip' length 731359 bytes (714 KB) ================================================== downloaded 714 KB -foundpkgs: RCurl, /tmp/RtmpxORs1h/downloaded_packages/RCurl_1.98-1.5.tar.gz -files: /tmp/RtmpxORs1h/downloaded_packages/RCurl_1.98-1.5.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpxORs1h/downloaded_packages/RCurl_1.98-1.5.tar.gz'' +foundpkgs: RCurl, /tmp/Rtmpak2ptZ/downloaded_packages/RCurl_1.98-1.5.tar.gz +files: /tmp/Rtmpak2ptZ/downloaded_packages/RCurl_1.98-1.5.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpak2ptZ/downloaded_packages/RCurl_1.98-1.5.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpxORs1h/downloaded_packages’ + ‘/tmp/Rtmpak2ptZ/downloaded_packages’ ================ -R PACKAGE INSTALLATION 174 / 240: readr +R PACKAGE INSTALLATION 174 / 238: readr ================ @@ -6947,26 +7212,26 @@ downloaded 507 KB The downloaded source packages are in - ‘/tmp/RtmpFaCpAq/downloaded_packages’ + ‘/tmp/Rtmp5urQe9/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/readr_2.1.1.tar.gz' Content type 'application/x-gzip' length 520151 bytes (507 KB) ================================================== downloaded 507 KB -foundpkgs: readr, /tmp/RtmpFaCpAq/downloaded_packages/readr_2.1.1.tar.gz -files: /tmp/RtmpFaCpAq/downloaded_packages/readr_2.1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpFaCpAq/downloaded_packages/readr_2.1.1.tar.gz'' +foundpkgs: readr, /tmp/Rtmp5urQe9/downloaded_packages/readr_2.1.1.tar.gz +files: /tmp/Rtmp5urQe9/downloaded_packages/readr_2.1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp5urQe9/downloaded_packages/readr_2.1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpFaCpAq/downloaded_packages’ + ‘/tmp/Rtmp5urQe9/downloaded_packages’ ================ -R PACKAGE INSTALLATION 175 / 240: readxl +R PACKAGE INSTALLATION 175 / 238: readxl ================ @@ -6980,26 +7245,26 @@ downloaded 2.0 MB The downloaded source packages are in - ‘/tmp/Rtmph5jXyK/downloaded_packages’ + ‘/tmp/RtmpwY1ZTR/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/readxl_1.3.1.tar.gz' Content type 'application/x-gzip' length 2056165 bytes (2.0 MB) ================================================== downloaded 2.0 MB -foundpkgs: readxl, /tmp/Rtmph5jXyK/downloaded_packages/readxl_1.3.1.tar.gz -files: /tmp/Rtmph5jXyK/downloaded_packages/readxl_1.3.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmph5jXyK/downloaded_packages/readxl_1.3.1.tar.gz'' +foundpkgs: readxl, /tmp/RtmpwY1ZTR/downloaded_packages/readxl_1.3.1.tar.gz +files: /tmp/RtmpwY1ZTR/downloaded_packages/readxl_1.3.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpwY1ZTR/downloaded_packages/readxl_1.3.1.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmph5jXyK/downloaded_packages’ + ‘/tmp/RtmpwY1ZTR/downloaded_packages’ ================ -R PACKAGE INSTALLATION 176 / 240: rematch +R PACKAGE INSTALLATION 176 / 238: rematch ================ @@ -7013,26 +7278,26 @@ downloaded 3719 bytes The downloaded source packages are in - ‘/tmp/RtmpBnYyrn/downloaded_packages’ + ‘/tmp/RtmpUdQ3i5/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/rematch_1.0.1.tar.gz' Content type 'application/x-gzip' length 3719 bytes ================================================== downloaded 3719 bytes -foundpkgs: rematch, /tmp/RtmpBnYyrn/downloaded_packages/rematch_1.0.1.tar.gz -files: /tmp/RtmpBnYyrn/downloaded_packages/rematch_1.0.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpBnYyrn/downloaded_packages/rematch_1.0.1.tar.gz'' +foundpkgs: rematch, /tmp/RtmpUdQ3i5/downloaded_packages/rematch_1.0.1.tar.gz +files: /tmp/RtmpUdQ3i5/downloaded_packages/rematch_1.0.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpUdQ3i5/downloaded_packages/rematch_1.0.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpBnYyrn/downloaded_packages’ + ‘/tmp/RtmpUdQ3i5/downloaded_packages’ ================ -R PACKAGE INSTALLATION 177 / 240: rematch2 +R PACKAGE INSTALLATION 177 / 238: rematch2 ================ @@ -7046,26 +7311,26 @@ downloaded 13 KB The downloaded source packages are in - ‘/tmp/Rtmpq9PXzK/downloaded_packages’ + ‘/tmp/RtmpGqVoUZ/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/rematch2_2.1.2.tar.gz' Content type 'application/x-gzip' length 13366 bytes (13 KB) ================================================== downloaded 13 KB -foundpkgs: rematch2, /tmp/Rtmpq9PXzK/downloaded_packages/rematch2_2.1.2.tar.gz -files: /tmp/Rtmpq9PXzK/downloaded_packages/rematch2_2.1.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpq9PXzK/downloaded_packages/rematch2_2.1.2.tar.gz'' +foundpkgs: rematch2, /tmp/RtmpGqVoUZ/downloaded_packages/rematch2_2.1.2.tar.gz +files: /tmp/RtmpGqVoUZ/downloaded_packages/rematch2_2.1.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpGqVoUZ/downloaded_packages/rematch2_2.1.2.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpq9PXzK/downloaded_packages’ + ‘/tmp/RtmpGqVoUZ/downloaded_packages’ ================ -R PACKAGE INSTALLATION 178 / 240: remotes +R PACKAGE INSTALLATION 178 / 238: remotes ================ @@ -7079,26 +7344,26 @@ downloaded 148 KB The downloaded source packages are in - ‘/tmp/RtmpfC9X18/downloaded_packages’ + ‘/tmp/RtmpXJ0myt/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/remotes_2.4.2.tar.gz' Content type 'application/x-gzip' length 152540 bytes (148 KB) ================================================== downloaded 148 KB -foundpkgs: remotes, /tmp/RtmpfC9X18/downloaded_packages/remotes_2.4.2.tar.gz -files: /tmp/RtmpfC9X18/downloaded_packages/remotes_2.4.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpfC9X18/downloaded_packages/remotes_2.4.2.tar.gz'' +foundpkgs: remotes, /tmp/RtmpXJ0myt/downloaded_packages/remotes_2.4.2.tar.gz +files: /tmp/RtmpXJ0myt/downloaded_packages/remotes_2.4.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXJ0myt/downloaded_packages/remotes_2.4.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpfC9X18/downloaded_packages’ + ‘/tmp/RtmpXJ0myt/downloaded_packages’ ================ -R PACKAGE INSTALLATION 179 / 240: reprex +R PACKAGE INSTALLATION 179 / 238: reprex ================ @@ -7112,26 +7377,26 @@ downloaded 1.0 MB The downloaded source packages are in - ‘/tmp/RtmpXhSRJV/downloaded_packages’ + ‘/tmp/Rtmpbkbeuk/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/reprex_2.0.1.tar.gz' Content type 'application/x-gzip' length 1087338 bytes (1.0 MB) ================================================== downloaded 1.0 MB -foundpkgs: reprex, /tmp/RtmpXhSRJV/downloaded_packages/reprex_2.0.1.tar.gz -files: /tmp/RtmpXhSRJV/downloaded_packages/reprex_2.0.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXhSRJV/downloaded_packages/reprex_2.0.1.tar.gz'' +foundpkgs: reprex, /tmp/Rtmpbkbeuk/downloaded_packages/reprex_2.0.1.tar.gz +files: /tmp/Rtmpbkbeuk/downloaded_packages/reprex_2.0.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpbkbeuk/downloaded_packages/reprex_2.0.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpXhSRJV/downloaded_packages’ + ‘/tmp/Rtmpbkbeuk/downloaded_packages’ ================ -R PACKAGE INSTALLATION 180 / 240: reshape +R PACKAGE INSTALLATION 180 / 238: reshape ================ @@ -7145,26 +7410,26 @@ downloaded 41 KB The downloaded source packages are in - ‘/tmp/RtmpaAkxFj/downloaded_packages’ + ‘/tmp/RtmpQKYM1a/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/reshape_0.8.8.tar.gz' Content type 'application/x-gzip' length 42558 bytes (41 KB) ================================================== downloaded 41 KB -foundpkgs: reshape, /tmp/RtmpaAkxFj/downloaded_packages/reshape_0.8.8.tar.gz -files: /tmp/RtmpaAkxFj/downloaded_packages/reshape_0.8.8.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpaAkxFj/downloaded_packages/reshape_0.8.8.tar.gz'' +foundpkgs: reshape, /tmp/RtmpQKYM1a/downloaded_packages/reshape_0.8.8.tar.gz +files: /tmp/RtmpQKYM1a/downloaded_packages/reshape_0.8.8.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpQKYM1a/downloaded_packages/reshape_0.8.8.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpaAkxFj/downloaded_packages’ + ‘/tmp/RtmpQKYM1a/downloaded_packages’ ================ -R PACKAGE INSTALLATION 181 / 240: reshape2 +R PACKAGE INSTALLATION 181 / 238: reshape2 ================ @@ -7178,26 +7443,26 @@ downloaded 36 KB The downloaded source packages are in - ‘/tmp/RtmplP6SuN/downloaded_packages’ + ‘/tmp/RtmpRcNnNT/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/reshape2_1.4.4.tar.gz' Content type 'application/x-gzip' length 37307 bytes (36 KB) ================================================== downloaded 36 KB -foundpkgs: reshape2, /tmp/RtmplP6SuN/downloaded_packages/reshape2_1.4.4.tar.gz -files: /tmp/RtmplP6SuN/downloaded_packages/reshape2_1.4.4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmplP6SuN/downloaded_packages/reshape2_1.4.4.tar.gz'' +foundpkgs: reshape2, /tmp/RtmpRcNnNT/downloaded_packages/reshape2_1.4.4.tar.gz +files: /tmp/RtmpRcNnNT/downloaded_packages/reshape2_1.4.4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpRcNnNT/downloaded_packages/reshape2_1.4.4.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmplP6SuN/downloaded_packages’ + ‘/tmp/RtmpRcNnNT/downloaded_packages’ ================ -R PACKAGE INSTALLATION 182 / 240: reticulate +R PACKAGE INSTALLATION 182 / 238: reticulate ================ @@ -7216,26 +7481,26 @@ downloaded 817 KB The downloaded source packages are in - ‘/tmp/RtmpDPIYYD/downloaded_packages’ + ‘/tmp/RtmpDycxq6/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/reticulate_1.22.tar.gz' Content type 'application/x-gzip' length 837192 bytes (817 KB) ================================================== downloaded 817 KB -foundpkgs: reticulate, /tmp/RtmpDPIYYD/downloaded_packages/reticulate_1.22.tar.gz -files: /tmp/RtmpDPIYYD/downloaded_packages/reticulate_1.22.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpDPIYYD/downloaded_packages/reticulate_1.22.tar.gz'' +foundpkgs: reticulate, /tmp/RtmpDycxq6/downloaded_packages/reticulate_1.22.tar.gz +files: /tmp/RtmpDycxq6/downloaded_packages/reticulate_1.22.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpDycxq6/downloaded_packages/reticulate_1.22.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpDPIYYD/downloaded_packages’ + ‘/tmp/RtmpDycxq6/downloaded_packages’ ================ -R PACKAGE INSTALLATION 183 / 240: rex +R PACKAGE INSTALLATION 183 / 238: rex ================ @@ -7249,26 +7514,26 @@ downloaded 91 KB The downloaded source packages are in - ‘/tmp/Rtmp0wDsqH/downloaded_packages’ + ‘/tmp/Rtmp4Xa7Ko/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/rex_1.2.1.tar.gz' Content type 'application/x-gzip' length 93583 bytes (91 KB) ================================================== downloaded 91 KB -foundpkgs: rex, /tmp/Rtmp0wDsqH/downloaded_packages/rex_1.2.1.tar.gz -files: /tmp/Rtmp0wDsqH/downloaded_packages/rex_1.2.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp0wDsqH/downloaded_packages/rex_1.2.1.tar.gz'' +foundpkgs: rex, /tmp/Rtmp4Xa7Ko/downloaded_packages/rex_1.2.1.tar.gz +files: /tmp/Rtmp4Xa7Ko/downloaded_packages/rex_1.2.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp4Xa7Ko/downloaded_packages/rex_1.2.1.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp0wDsqH/downloaded_packages’ + ‘/tmp/Rtmp4Xa7Ko/downloaded_packages’ ================ -R PACKAGE INSTALLATION 184 / 240: rhdf5 +R PACKAGE INSTALLATION 184 / 238: rhdf5 ================ @@ -7290,7 +7555,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 185 / 240: rhdf5filters +R PACKAGE INSTALLATION 185 / 238: rhdf5filters ================ @@ -7312,7 +7577,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 186 / 240: Rhdf5lib +R PACKAGE INSTALLATION 186 / 238: Rhdf5lib ================ @@ -7334,7 +7599,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 187 / 240: Rhtslib +R PACKAGE INSTALLATION 187 / 238: Rhtslib ================ @@ -7356,7 +7621,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 188 / 240: rio +R PACKAGE INSTALLATION 188 / 238: rio ================ @@ -7370,26 +7635,26 @@ downloaded 434 KB The downloaded source packages are in - ‘/tmp/RtmpY4UCxR/downloaded_packages’ + ‘/tmp/RtmpJPHK6d/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/rio_0.5.29.tar.gz' Content type 'application/x-gzip' length 445401 bytes (434 KB) ================================================== downloaded 434 KB -foundpkgs: rio, /tmp/RtmpY4UCxR/downloaded_packages/rio_0.5.29.tar.gz -files: /tmp/RtmpY4UCxR/downloaded_packages/rio_0.5.29.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpY4UCxR/downloaded_packages/rio_0.5.29.tar.gz'' +foundpkgs: rio, /tmp/RtmpJPHK6d/downloaded_packages/rio_0.5.29.tar.gz +files: /tmp/RtmpJPHK6d/downloaded_packages/rio_0.5.29.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpJPHK6d/downloaded_packages/rio_0.5.29.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpY4UCxR/downloaded_packages’ + ‘/tmp/RtmpJPHK6d/downloaded_packages’ ================ -R PACKAGE INSTALLATION 189 / 240: rlang +R PACKAGE INSTALLATION 189 / 238: rlang ================ @@ -7403,26 +7668,26 @@ downloaded 841 KB The downloaded source packages are in - ‘/tmp/RtmpcJhxfm/downloaded_packages’ + ‘/tmp/RtmpncO6FQ/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/rlang_0.4.12.tar.gz' Content type 'application/x-gzip' length 861658 bytes (841 KB) ================================================== downloaded 841 KB -foundpkgs: rlang, /tmp/RtmpcJhxfm/downloaded_packages/rlang_0.4.12.tar.gz -files: /tmp/RtmpcJhxfm/downloaded_packages/rlang_0.4.12.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpcJhxfm/downloaded_packages/rlang_0.4.12.tar.gz'' +foundpkgs: rlang, /tmp/RtmpncO6FQ/downloaded_packages/rlang_0.4.12.tar.gz +files: /tmp/RtmpncO6FQ/downloaded_packages/rlang_0.4.12.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpncO6FQ/downloaded_packages/rlang_0.4.12.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpcJhxfm/downloaded_packages’ + ‘/tmp/RtmpncO6FQ/downloaded_packages’ ================ -R PACKAGE INSTALLATION 190 / 240: rmarkdown +R PACKAGE INSTALLATION 190 / 238: rmarkdown ================ @@ -7436,26 +7701,26 @@ downloaded 3.1 MB The downloaded source packages are in - ‘/tmp/RtmpeZuI9B/downloaded_packages’ + ‘/tmp/Rtmp7NKW1s/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/rmarkdown_2.11.tar.gz' Content type 'application/x-gzip' length 3212367 bytes (3.1 MB) ================================================== downloaded 3.1 MB -foundpkgs: rmarkdown, /tmp/RtmpeZuI9B/downloaded_packages/rmarkdown_2.11.tar.gz -files: /tmp/RtmpeZuI9B/downloaded_packages/rmarkdown_2.11.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpeZuI9B/downloaded_packages/rmarkdown_2.11.tar.gz'' +foundpkgs: rmarkdown, /tmp/Rtmp7NKW1s/downloaded_packages/rmarkdown_2.11.tar.gz +files: /tmp/Rtmp7NKW1s/downloaded_packages/rmarkdown_2.11.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7NKW1s/downloaded_packages/rmarkdown_2.11.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpeZuI9B/downloaded_packages’ + ‘/tmp/Rtmp7NKW1s/downloaded_packages’ ================ -R PACKAGE INSTALLATION 191 / 240: roxygen2 +R PACKAGE INSTALLATION 191 / 238: roxygen2 ================ @@ -7469,26 +7734,26 @@ downloaded 261 KB The downloaded source packages are in - ‘/tmp/Rtmp21TibY/downloaded_packages’ + ‘/tmp/Rtmplatb3T/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/roxygen2_7.1.2.tar.gz' Content type 'application/x-gzip' length 267337 bytes (261 KB) ================================================== downloaded 261 KB -foundpkgs: roxygen2, /tmp/Rtmp21TibY/downloaded_packages/roxygen2_7.1.2.tar.gz -files: /tmp/Rtmp21TibY/downloaded_packages/roxygen2_7.1.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp21TibY/downloaded_packages/roxygen2_7.1.2.tar.gz'' +foundpkgs: roxygen2, /tmp/Rtmplatb3T/downloaded_packages/roxygen2_7.1.2.tar.gz +files: /tmp/Rtmplatb3T/downloaded_packages/roxygen2_7.1.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmplatb3T/downloaded_packages/roxygen2_7.1.2.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp21TibY/downloaded_packages’ + ‘/tmp/Rtmplatb3T/downloaded_packages’ ================ -R PACKAGE INSTALLATION 192 / 240: rprojroot +R PACKAGE INSTALLATION 192 / 238: rprojroot ================ @@ -7502,26 +7767,26 @@ downloaded 58 KB The downloaded source packages are in - ‘/tmp/Rtmpfi6n9X/downloaded_packages’ + ‘/tmp/RtmpEFzQql/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/rprojroot_2.0.2.tar.gz' Content type 'application/x-gzip' length 59967 bytes (58 KB) ================================================== downloaded 58 KB -foundpkgs: rprojroot, /tmp/Rtmpfi6n9X/downloaded_packages/rprojroot_2.0.2.tar.gz -files: /tmp/Rtmpfi6n9X/downloaded_packages/rprojroot_2.0.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpfi6n9X/downloaded_packages/rprojroot_2.0.2.tar.gz'' +foundpkgs: rprojroot, /tmp/RtmpEFzQql/downloaded_packages/rprojroot_2.0.2.tar.gz +files: /tmp/RtmpEFzQql/downloaded_packages/rprojroot_2.0.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpEFzQql/downloaded_packages/rprojroot_2.0.2.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpfi6n9X/downloaded_packages’ + ‘/tmp/RtmpEFzQql/downloaded_packages’ ================ -R PACKAGE INSTALLATION 193 / 240: Rsamtools +R PACKAGE INSTALLATION 193 / 238: Rsamtools ================ @@ -7543,7 +7808,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 194 / 240: RSQLite +R PACKAGE INSTALLATION 194 / 238: RSQLite ================ @@ -7557,26 +7822,26 @@ downloaded 3.5 MB The downloaded source packages are in - ‘/tmp/Rtmp9UQWDS/downloaded_packages’ + ‘/tmp/RtmpxXF579/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/RSQLite_2.2.9.tar.gz' Content type 'application/x-gzip' length 3649327 bytes (3.5 MB) ================================================== downloaded 3.5 MB -foundpkgs: RSQLite, /tmp/Rtmp9UQWDS/downloaded_packages/RSQLite_2.2.9.tar.gz -files: /tmp/Rtmp9UQWDS/downloaded_packages/RSQLite_2.2.9.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp9UQWDS/downloaded_packages/RSQLite_2.2.9.tar.gz'' +foundpkgs: RSQLite, /tmp/RtmpxXF579/downloaded_packages/RSQLite_2.2.9.tar.gz +files: /tmp/RtmpxXF579/downloaded_packages/RSQLite_2.2.9.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpxXF579/downloaded_packages/RSQLite_2.2.9.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp9UQWDS/downloaded_packages’ + ‘/tmp/RtmpxXF579/downloaded_packages’ ================ -R PACKAGE INSTALLATION 195 / 240: rstudioapi +R PACKAGE INSTALLATION 195 / 238: rstudioapi ================ @@ -7590,26 +7855,26 @@ downloaded 107 KB The downloaded source packages are in - ‘/tmp/Rtmp6xRd6z/downloaded_packages’ + ‘/tmp/RtmpNFjRJ2/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/rstudioapi_0.13.tar.gz' Content type 'application/x-gzip' length 110472 bytes (107 KB) ================================================== downloaded 107 KB -foundpkgs: rstudioapi, /tmp/Rtmp6xRd6z/downloaded_packages/rstudioapi_0.13.tar.gz -files: /tmp/Rtmp6xRd6z/downloaded_packages/rstudioapi_0.13.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6xRd6z/downloaded_packages/rstudioapi_0.13.tar.gz'' +foundpkgs: rstudioapi, /tmp/RtmpNFjRJ2/downloaded_packages/rstudioapi_0.13.tar.gz +files: /tmp/RtmpNFjRJ2/downloaded_packages/rstudioapi_0.13.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpNFjRJ2/downloaded_packages/rstudioapi_0.13.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp6xRd6z/downloaded_packages’ + ‘/tmp/RtmpNFjRJ2/downloaded_packages’ ================ -R PACKAGE INSTALLATION 196 / 240: rversions +R PACKAGE INSTALLATION 196 / 238: rversions ================ @@ -7623,26 +7888,26 @@ downloaded 41 KB The downloaded source packages are in - ‘/tmp/RtmpCPwU5f/downloaded_packages’ + ‘/tmp/Rtmpy7FMZF/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/rversions_2.1.1.tar.gz' Content type 'application/x-gzip' length 42064 bytes (41 KB) ================================================== downloaded 41 KB -foundpkgs: rversions, /tmp/RtmpCPwU5f/downloaded_packages/rversions_2.1.1.tar.gz -files: /tmp/RtmpCPwU5f/downloaded_packages/rversions_2.1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpCPwU5f/downloaded_packages/rversions_2.1.1.tar.gz'' +foundpkgs: rversions, /tmp/Rtmpy7FMZF/downloaded_packages/rversions_2.1.1.tar.gz +files: /tmp/Rtmpy7FMZF/downloaded_packages/rversions_2.1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpy7FMZF/downloaded_packages/rversions_2.1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpCPwU5f/downloaded_packages’ + ‘/tmp/Rtmpy7FMZF/downloaded_packages’ ================ -R PACKAGE INSTALLATION 197 / 240: rvest +R PACKAGE INSTALLATION 197 / 238: rvest ================ @@ -7656,26 +7921,26 @@ downloaded 92 KB The downloaded source packages are in - ‘/tmp/RtmpG2w2D0/downloaded_packages’ + ‘/tmp/RtmpFJAkaA/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/rvest_1.0.2.tar.gz' Content type 'application/x-gzip' length 94357 bytes (92 KB) ================================================== downloaded 92 KB -foundpkgs: rvest, /tmp/RtmpG2w2D0/downloaded_packages/rvest_1.0.2.tar.gz -files: /tmp/RtmpG2w2D0/downloaded_packages/rvest_1.0.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpG2w2D0/downloaded_packages/rvest_1.0.2.tar.gz'' +foundpkgs: rvest, /tmp/RtmpFJAkaA/downloaded_packages/rvest_1.0.2.tar.gz +files: /tmp/RtmpFJAkaA/downloaded_packages/rvest_1.0.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpFJAkaA/downloaded_packages/rvest_1.0.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpG2w2D0/downloaded_packages’ + ‘/tmp/RtmpFJAkaA/downloaded_packages’ ================ -R PACKAGE INSTALLATION 198 / 240: S4Vectors +R PACKAGE INSTALLATION 198 / 238: S4Vectors ================ @@ -7697,35 +7962,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 199 / 240: SARTools - -================ - - - - -'getOption("repos")' replaces Bioconductor standard repositories, see -'?repositories' for details - -replacement repositories: - CRAN: https://cloud.r-project.org - -Bioconductor version 3.12 (BiocManager 1.30.16), R 4.0.5 (2021-03-31) -Installing package(s) 'SARTools' -system (cmd0): /usr/lib/R/bin/R CMD INSTALL -Warning in .inet_warning(msg) : - package ‘SARTools’ is not available for Bioconductor version '3.12' - -A version of this package for your version of R might be available elsewhere, -see the ideas at -https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages - - - - -================ - -R PACKAGE INSTALLATION 200 / 240: scales +R PACKAGE INSTALLATION 199 / 238: scales ================ @@ -7739,26 +7976,26 @@ downloaded 503 KB The downloaded source packages are in - ‘/tmp/RtmpqKJur1/downloaded_packages’ + ‘/tmp/Rtmp6YqBZB/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/scales_1.1.1.tar.gz' Content type 'application/x-gzip' length 515201 bytes (503 KB) ================================================== downloaded 503 KB -foundpkgs: scales, /tmp/RtmpqKJur1/downloaded_packages/scales_1.1.1.tar.gz -files: /tmp/RtmpqKJur1/downloaded_packages/scales_1.1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpqKJur1/downloaded_packages/scales_1.1.1.tar.gz'' +foundpkgs: scales, /tmp/Rtmp6YqBZB/downloaded_packages/scales_1.1.1.tar.gz +files: /tmp/Rtmp6YqBZB/downloaded_packages/scales_1.1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6YqBZB/downloaded_packages/scales_1.1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpqKJur1/downloaded_packages’ + ‘/tmp/Rtmp6YqBZB/downloaded_packages’ ================ -R PACKAGE INSTALLATION 201 / 240: selectr +R PACKAGE INSTALLATION 200 / 238: selectr ================ @@ -7772,26 +8009,26 @@ downloaded 40 KB The downloaded source packages are in - ‘/tmp/RtmpjTVApY/downloaded_packages’ + ‘/tmp/Rtmpj3G50t/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/selectr_0.4-2.tar.gz' Content type 'application/x-gzip' length 41371 bytes (40 KB) ================================================== downloaded 40 KB -foundpkgs: selectr, /tmp/RtmpjTVApY/downloaded_packages/selectr_0.4-2.tar.gz -files: /tmp/RtmpjTVApY/downloaded_packages/selectr_0.4-2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpjTVApY/downloaded_packages/selectr_0.4-2.tar.gz'' +foundpkgs: selectr, /tmp/Rtmpj3G50t/downloaded_packages/selectr_0.4-2.tar.gz +files: /tmp/Rtmpj3G50t/downloaded_packages/selectr_0.4-2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpj3G50t/downloaded_packages/selectr_0.4-2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpjTVApY/downloaded_packages’ + ‘/tmp/Rtmpj3G50t/downloaded_packages’ ================ -R PACKAGE INSTALLATION 202 / 240: sessioninfo +R PACKAGE INSTALLATION 201 / 238: sessioninfo ================ @@ -7805,26 +8042,26 @@ downloaded 166 KB The downloaded source packages are in - ‘/tmp/RtmpdSMeke/downloaded_packages’ + ‘/tmp/Rtmp0KrsAa/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/sessioninfo_1.2.2.tar.gz' Content type 'application/x-gzip' length 170924 bytes (166 KB) ================================================== downloaded 166 KB -foundpkgs: sessioninfo, /tmp/RtmpdSMeke/downloaded_packages/sessioninfo_1.2.2.tar.gz -files: /tmp/RtmpdSMeke/downloaded_packages/sessioninfo_1.2.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpdSMeke/downloaded_packages/sessioninfo_1.2.2.tar.gz'' +foundpkgs: sessioninfo, /tmp/Rtmp0KrsAa/downloaded_packages/sessioninfo_1.2.2.tar.gz +files: /tmp/Rtmp0KrsAa/downloaded_packages/sessioninfo_1.2.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp0KrsAa/downloaded_packages/sessioninfo_1.2.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpdSMeke/downloaded_packages’ + ‘/tmp/Rtmp0KrsAa/downloaded_packages’ ================ -R PACKAGE INSTALLATION 203 / 240: snow +R PACKAGE INSTALLATION 202 / 238: snow ================ @@ -7838,26 +8075,26 @@ downloaded 19 KB The downloaded source packages are in - ‘/tmp/Rtmp76o9mD/downloaded_packages’ + ‘/tmp/RtmpzOOtYw/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/snow_0.4-4.tar.gz' Content type 'application/x-gzip' length 20464 bytes (19 KB) ================================================== downloaded 19 KB -foundpkgs: snow, /tmp/Rtmp76o9mD/downloaded_packages/snow_0.4-4.tar.gz -files: /tmp/Rtmp76o9mD/downloaded_packages/snow_0.4-4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp76o9mD/downloaded_packages/snow_0.4-4.tar.gz'' +foundpkgs: snow, /tmp/RtmpzOOtYw/downloaded_packages/snow_0.4-4.tar.gz +files: /tmp/RtmpzOOtYw/downloaded_packages/snow_0.4-4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpzOOtYw/downloaded_packages/snow_0.4-4.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp76o9mD/downloaded_packages’ + ‘/tmp/RtmpzOOtYw/downloaded_packages’ ================ -R PACKAGE INSTALLATION 204 / 240: snowfall +R PACKAGE INSTALLATION 203 / 238: snowfall ================ @@ -7871,26 +8108,26 @@ downloaded 336 KB The downloaded source packages are in - ‘/tmp/RtmpNWOBSJ/downloaded_packages’ + ‘/tmp/RtmpJ5lTE7/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/snowfall_1.84-6.1.tar.gz' Content type 'application/x-gzip' length 344407 bytes (336 KB) ================================================== downloaded 336 KB -foundpkgs: snowfall, /tmp/RtmpNWOBSJ/downloaded_packages/snowfall_1.84-6.1.tar.gz -files: /tmp/RtmpNWOBSJ/downloaded_packages/snowfall_1.84-6.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpNWOBSJ/downloaded_packages/snowfall_1.84-6.1.tar.gz'' +foundpkgs: snowfall, /tmp/RtmpJ5lTE7/downloaded_packages/snowfall_1.84-6.1.tar.gz +files: /tmp/RtmpJ5lTE7/downloaded_packages/snowfall_1.84-6.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpJ5lTE7/downloaded_packages/snowfall_1.84-6.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpNWOBSJ/downloaded_packages’ + ‘/tmp/RtmpJ5lTE7/downloaded_packages’ ================ -R PACKAGE INSTALLATION 205 / 240: sp +R PACKAGE INSTALLATION 204 / 238: sp ================ @@ -7904,26 +8141,26 @@ downloaded 1.4 MB The downloaded source packages are in - ‘/tmp/RtmpcbMWpR/downloaded_packages’ + ‘/tmp/RtmpHMxtjf/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/sp_1.4-6.tar.gz' Content type 'application/x-gzip' length 1423843 bytes (1.4 MB) ================================================== downloaded 1.4 MB -foundpkgs: sp, /tmp/RtmpcbMWpR/downloaded_packages/sp_1.4-6.tar.gz -files: /tmp/RtmpcbMWpR/downloaded_packages/sp_1.4-6.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpcbMWpR/downloaded_packages/sp_1.4-6.tar.gz'' +foundpkgs: sp, /tmp/RtmpHMxtjf/downloaded_packages/sp_1.4-6.tar.gz +files: /tmp/RtmpHMxtjf/downloaded_packages/sp_1.4-6.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpHMxtjf/downloaded_packages/sp_1.4-6.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpcbMWpR/downloaded_packages’ + ‘/tmp/RtmpHMxtjf/downloaded_packages’ ================ -R PACKAGE INSTALLATION 206 / 240: SparseM +R PACKAGE INSTALLATION 205 / 238: SparseM ================ @@ -7937,26 +8174,26 @@ downloaded 717 KB The downloaded source packages are in - ‘/tmp/Rtmp3Ehu6L/downloaded_packages’ + ‘/tmp/RtmpqW2LHO/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/SparseM_1.81.tar.gz' Content type 'application/x-gzip' length 735100 bytes (717 KB) ================================================== downloaded 717 KB -foundpkgs: SparseM, /tmp/Rtmp3Ehu6L/downloaded_packages/SparseM_1.81.tar.gz -files: /tmp/Rtmp3Ehu6L/downloaded_packages/SparseM_1.81.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp3Ehu6L/downloaded_packages/SparseM_1.81.tar.gz'' +foundpkgs: SparseM, /tmp/RtmpqW2LHO/downloaded_packages/SparseM_1.81.tar.gz +files: /tmp/RtmpqW2LHO/downloaded_packages/SparseM_1.81.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpqW2LHO/downloaded_packages/SparseM_1.81.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp3Ehu6L/downloaded_packages’ + ‘/tmp/RtmpqW2LHO/downloaded_packages’ ================ -R PACKAGE INSTALLATION 207 / 240: statmod +R PACKAGE INSTALLATION 206 / 238: statmod ================ @@ -7970,26 +8207,26 @@ downloaded 91 KB The downloaded source packages are in - ‘/tmp/RtmpvROKYw/downloaded_packages’ + ‘/tmp/Rtmp1bHfJQ/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/statmod_1.4.36.tar.gz' Content type 'application/x-gzip' length 93897 bytes (91 KB) ================================================== downloaded 91 KB -foundpkgs: statmod, /tmp/RtmpvROKYw/downloaded_packages/statmod_1.4.36.tar.gz -files: /tmp/RtmpvROKYw/downloaded_packages/statmod_1.4.36.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpvROKYw/downloaded_packages/statmod_1.4.36.tar.gz'' +foundpkgs: statmod, /tmp/Rtmp1bHfJQ/downloaded_packages/statmod_1.4.36.tar.gz +files: /tmp/Rtmp1bHfJQ/downloaded_packages/statmod_1.4.36.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp1bHfJQ/downloaded_packages/statmod_1.4.36.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpvROKYw/downloaded_packages’ + ‘/tmp/Rtmp1bHfJQ/downloaded_packages’ ================ -R PACKAGE INSTALLATION 208 / 240: stringi +R PACKAGE INSTALLATION 207 / 238: stringi ================ @@ -8003,26 +8240,26 @@ downloaded 7.2 MB The downloaded source packages are in - ‘/tmp/Rtmp6xw7gr/downloaded_packages’ + ‘/tmp/Rtmp9aYC36/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/stringi_1.7.6.tar.gz' Content type 'application/x-gzip' length 7600716 bytes (7.2 MB) ================================================== downloaded 7.2 MB -foundpkgs: stringi, /tmp/Rtmp6xw7gr/downloaded_packages/stringi_1.7.6.tar.gz -files: /tmp/Rtmp6xw7gr/downloaded_packages/stringi_1.7.6.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp6xw7gr/downloaded_packages/stringi_1.7.6.tar.gz'' +foundpkgs: stringi, /tmp/Rtmp9aYC36/downloaded_packages/stringi_1.7.6.tar.gz +files: /tmp/Rtmp9aYC36/downloaded_packages/stringi_1.7.6.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp9aYC36/downloaded_packages/stringi_1.7.6.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp6xw7gr/downloaded_packages’ + ‘/tmp/Rtmp9aYC36/downloaded_packages’ ================ -R PACKAGE INSTALLATION 209 / 240: stringr +R PACKAGE INSTALLATION 208 / 238: stringr ================ @@ -8036,26 +8273,26 @@ downloaded 132 KB The downloaded source packages are in - ‘/tmp/RtmpRFKGb5/downloaded_packages’ + ‘/tmp/RtmpxTEl8m/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/stringr_1.4.0.tar.gz' Content type 'application/x-gzip' length 135777 bytes (132 KB) ================================================== downloaded 132 KB -foundpkgs: stringr, /tmp/RtmpRFKGb5/downloaded_packages/stringr_1.4.0.tar.gz -files: /tmp/RtmpRFKGb5/downloaded_packages/stringr_1.4.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpRFKGb5/downloaded_packages/stringr_1.4.0.tar.gz'' +foundpkgs: stringr, /tmp/RtmpxTEl8m/downloaded_packages/stringr_1.4.0.tar.gz +files: /tmp/RtmpxTEl8m/downloaded_packages/stringr_1.4.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpxTEl8m/downloaded_packages/stringr_1.4.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpRFKGb5/downloaded_packages’ + ‘/tmp/RtmpxTEl8m/downloaded_packages’ ================ -R PACKAGE INSTALLATION 210 / 240: SummarizedExperiment +R PACKAGE INSTALLATION 209 / 238: SummarizedExperiment ================ @@ -8077,7 +8314,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 211 / 240: SuppDists +R PACKAGE INSTALLATION 210 / 238: SuppDists ================ @@ -8091,26 +8328,26 @@ downloaded 138 KB The downloaded source packages are in - ‘/tmp/RtmpDzGjON/downloaded_packages’ + ‘/tmp/Rtmpbc3CwV/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/SuppDists_1.1-9.5.tar.gz' Content type 'application/x-gzip' length 141610 bytes (138 KB) ================================================== downloaded 138 KB -foundpkgs: SuppDists, /tmp/RtmpDzGjON/downloaded_packages/SuppDists_1.1-9.5.tar.gz -files: /tmp/RtmpDzGjON/downloaded_packages/SuppDists_1.1-9.5.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpDzGjON/downloaded_packages/SuppDists_1.1-9.5.tar.gz'' +foundpkgs: SuppDists, /tmp/Rtmpbc3CwV/downloaded_packages/SuppDists_1.1-9.5.tar.gz +files: /tmp/Rtmpbc3CwV/downloaded_packages/SuppDists_1.1-9.5.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpbc3CwV/downloaded_packages/SuppDists_1.1-9.5.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpDzGjON/downloaded_packages’ + ‘/tmp/Rtmpbc3CwV/downloaded_packages’ ================ -R PACKAGE INSTALLATION 212 / 240: svglite +R PACKAGE INSTALLATION 211 / 238: svglite ================ @@ -8124,26 +8361,26 @@ downloaded 119 KB The downloaded source packages are in - ‘/tmp/Rtmp7TlRaz/downloaded_packages’ + ‘/tmp/RtmpkqEqHj/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/svglite_2.0.0.tar.gz' Content type 'application/x-gzip' length 122260 bytes (119 KB) ================================================== downloaded 119 KB -foundpkgs: svglite, /tmp/Rtmp7TlRaz/downloaded_packages/svglite_2.0.0.tar.gz -files: /tmp/Rtmp7TlRaz/downloaded_packages/svglite_2.0.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7TlRaz/downloaded_packages/svglite_2.0.0.tar.gz'' +foundpkgs: svglite, /tmp/RtmpkqEqHj/downloaded_packages/svglite_2.0.0.tar.gz +files: /tmp/RtmpkqEqHj/downloaded_packages/svglite_2.0.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpkqEqHj/downloaded_packages/svglite_2.0.0.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp7TlRaz/downloaded_packages’ + ‘/tmp/RtmpkqEqHj/downloaded_packages’ ================ -R PACKAGE INSTALLATION 213 / 240: sys +R PACKAGE INSTALLATION 212 / 238: sys ================ @@ -8157,26 +8394,26 @@ downloaded 19 KB The downloaded source packages are in - ‘/tmp/RtmpkZR7Qf/downloaded_packages’ + ‘/tmp/RtmpuZIXWr/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/sys_3.4.tar.gz' Content type 'application/x-gzip' length 20138 bytes (19 KB) ================================================== downloaded 19 KB -foundpkgs: sys, /tmp/RtmpkZR7Qf/downloaded_packages/sys_3.4.tar.gz -files: /tmp/RtmpkZR7Qf/downloaded_packages/sys_3.4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpkZR7Qf/downloaded_packages/sys_3.4.tar.gz'' +foundpkgs: sys, /tmp/RtmpuZIXWr/downloaded_packages/sys_3.4.tar.gz +files: /tmp/RtmpuZIXWr/downloaded_packages/sys_3.4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpuZIXWr/downloaded_packages/sys_3.4.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpkZR7Qf/downloaded_packages’ + ‘/tmp/RtmpuZIXWr/downloaded_packages’ ================ -R PACKAGE INSTALLATION 214 / 240: systemfonts +R PACKAGE INSTALLATION 213 / 238: systemfonts ================ @@ -8190,26 +8427,26 @@ downloaded 79 KB The downloaded source packages are in - ‘/tmp/RtmplwAXn4/downloaded_packages’ + ‘/tmp/RtmpbCcWDj/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/systemfonts_1.0.3.tar.gz' Content type 'application/x-gzip' length 81722 bytes (79 KB) ================================================== downloaded 79 KB -foundpkgs: systemfonts, /tmp/RtmplwAXn4/downloaded_packages/systemfonts_1.0.3.tar.gz -files: /tmp/RtmplwAXn4/downloaded_packages/systemfonts_1.0.3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmplwAXn4/downloaded_packages/systemfonts_1.0.3.tar.gz'' +foundpkgs: systemfonts, /tmp/RtmpbCcWDj/downloaded_packages/systemfonts_1.0.3.tar.gz +files: /tmp/RtmpbCcWDj/downloaded_packages/systemfonts_1.0.3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpbCcWDj/downloaded_packages/systemfonts_1.0.3.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmplwAXn4/downloaded_packages’ + ‘/tmp/RtmpbCcWDj/downloaded_packages’ ================ -R PACKAGE INSTALLATION 215 / 240: testthat +R PACKAGE INSTALLATION 214 / 238: testthat ================ @@ -8223,26 +8460,26 @@ downloaded 679 KB The downloaded source packages are in - ‘/tmp/RtmpexONE2/downloaded_packages’ + ‘/tmp/RtmpBVIUm0/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/testthat_3.1.1.tar.gz' Content type 'application/x-gzip' length 695812 bytes (679 KB) ================================================== downloaded 679 KB -foundpkgs: testthat, /tmp/RtmpexONE2/downloaded_packages/testthat_3.1.1.tar.gz -files: /tmp/RtmpexONE2/downloaded_packages/testthat_3.1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpexONE2/downloaded_packages/testthat_3.1.1.tar.gz'' +foundpkgs: testthat, /tmp/RtmpBVIUm0/downloaded_packages/testthat_3.1.1.tar.gz +files: /tmp/RtmpBVIUm0/downloaded_packages/testthat_3.1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpBVIUm0/downloaded_packages/testthat_3.1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpexONE2/downloaded_packages’ + ‘/tmp/RtmpBVIUm0/downloaded_packages’ ================ -R PACKAGE INSTALLATION 216 / 240: tibble +R PACKAGE INSTALLATION 215 / 238: tibble ================ @@ -8256,26 +8493,26 @@ downloaded 722 KB The downloaded source packages are in - ‘/tmp/Rtmpz1E03P/downloaded_packages’ + ‘/tmp/Rtmpa7ATJd/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/tibble_3.1.6.tar.gz' Content type 'application/x-gzip' length 739349 bytes (722 KB) ================================================== downloaded 722 KB -foundpkgs: tibble, /tmp/Rtmpz1E03P/downloaded_packages/tibble_3.1.6.tar.gz -files: /tmp/Rtmpz1E03P/downloaded_packages/tibble_3.1.6.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpz1E03P/downloaded_packages/tibble_3.1.6.tar.gz'' +foundpkgs: tibble, /tmp/Rtmpa7ATJd/downloaded_packages/tibble_3.1.6.tar.gz +files: /tmp/Rtmpa7ATJd/downloaded_packages/tibble_3.1.6.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpa7ATJd/downloaded_packages/tibble_3.1.6.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpz1E03P/downloaded_packages’ + ‘/tmp/Rtmpa7ATJd/downloaded_packages’ ================ -R PACKAGE INSTALLATION 217 / 240: tidyr +R PACKAGE INSTALLATION 216 / 238: tidyr ================ @@ -8289,26 +8526,26 @@ downloaded 692 KB The downloaded source packages are in - ‘/tmp/RtmpHogDmE/downloaded_packages’ + ‘/tmp/RtmpL07yfE/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/tidyr_1.1.4.tar.gz' Content type 'application/x-gzip' length 709082 bytes (692 KB) ================================================== downloaded 692 KB -foundpkgs: tidyr, /tmp/RtmpHogDmE/downloaded_packages/tidyr_1.1.4.tar.gz -files: /tmp/RtmpHogDmE/downloaded_packages/tidyr_1.1.4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpHogDmE/downloaded_packages/tidyr_1.1.4.tar.gz'' +foundpkgs: tidyr, /tmp/RtmpL07yfE/downloaded_packages/tidyr_1.1.4.tar.gz +files: /tmp/RtmpL07yfE/downloaded_packages/tidyr_1.1.4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpL07yfE/downloaded_packages/tidyr_1.1.4.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpHogDmE/downloaded_packages’ + ‘/tmp/RtmpL07yfE/downloaded_packages’ ================ -R PACKAGE INSTALLATION 218 / 240: tidyselect +R PACKAGE INSTALLATION 217 / 238: tidyselect ================ @@ -8322,26 +8559,26 @@ downloaded 89 KB The downloaded source packages are in - ‘/tmp/RtmpoXf1nt/downloaded_packages’ + ‘/tmp/Rtmpc0b4KT/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/tidyselect_1.1.1.tar.gz' Content type 'application/x-gzip' length 92088 bytes (89 KB) ================================================== downloaded 89 KB -foundpkgs: tidyselect, /tmp/RtmpoXf1nt/downloaded_packages/tidyselect_1.1.1.tar.gz -files: /tmp/RtmpoXf1nt/downloaded_packages/tidyselect_1.1.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpoXf1nt/downloaded_packages/tidyselect_1.1.1.tar.gz'' +foundpkgs: tidyselect, /tmp/Rtmpc0b4KT/downloaded_packages/tidyselect_1.1.1.tar.gz +files: /tmp/Rtmpc0b4KT/downloaded_packages/tidyselect_1.1.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpc0b4KT/downloaded_packages/tidyselect_1.1.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpoXf1nt/downloaded_packages’ + ‘/tmp/Rtmpc0b4KT/downloaded_packages’ ================ -R PACKAGE INSTALLATION 219 / 240: tidyverse +R PACKAGE INSTALLATION 218 / 238: tidyverse ================ @@ -8355,26 +8592,26 @@ downloaded 686 KB The downloaded source packages are in - ‘/tmp/RtmpnnNhbf/downloaded_packages’ + ‘/tmp/RtmpfANK9Q/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/tidyverse_1.3.1.tar.gz' Content type 'application/x-gzip' length 702779 bytes (686 KB) ================================================== downloaded 686 KB -foundpkgs: tidyverse, /tmp/RtmpnnNhbf/downloaded_packages/tidyverse_1.3.1.tar.gz -files: /tmp/RtmpnnNhbf/downloaded_packages/tidyverse_1.3.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpnnNhbf/downloaded_packages/tidyverse_1.3.1.tar.gz'' +foundpkgs: tidyverse, /tmp/RtmpfANK9Q/downloaded_packages/tidyverse_1.3.1.tar.gz +files: /tmp/RtmpfANK9Q/downloaded_packages/tidyverse_1.3.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpfANK9Q/downloaded_packages/tidyverse_1.3.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpnnNhbf/downloaded_packages’ + ‘/tmp/RtmpfANK9Q/downloaded_packages’ ================ -R PACKAGE INSTALLATION 220 / 240: tinytex +R PACKAGE INSTALLATION 219 / 238: tinytex ================ @@ -8388,54 +8625,26 @@ downloaded 30 KB The downloaded source packages are in - ‘/tmp/RtmprpMxfS/downloaded_packages’ + ‘/tmp/RtmpNiiCHE/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/tinytex_0.36.tar.gz' Content type 'application/x-gzip' length 31525 bytes (30 KB) ================================================== downloaded 30 KB -foundpkgs: tinytex, /tmp/RtmprpMxfS/downloaded_packages/tinytex_0.36.tar.gz -files: /tmp/RtmprpMxfS/downloaded_packages/tinytex_0.36.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmprpMxfS/downloaded_packages/tinytex_0.36.tar.gz'' +foundpkgs: tinytex, /tmp/RtmpNiiCHE/downloaded_packages/tinytex_0.36.tar.gz +files: /tmp/RtmpNiiCHE/downloaded_packages/tinytex_0.36.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpNiiCHE/downloaded_packages/tinytex_0.36.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmprpMxfS/downloaded_packages’ - - - - -================ - -R PACKAGE INSTALLATION 221 / 240: translations - -================ - - - - -'getOption("repos")' replaces Bioconductor standard repositories, see -'?repositories' for details - -replacement repositories: - CRAN: https://cloud.r-project.org - -Bioconductor version 3.12 (BiocManager 1.30.16), R 4.0.5 (2021-03-31) -Installing package(s) 'translations' -system (cmd0): /usr/lib/R/bin/R CMD INSTALL -Warning in .inet_warning(msg) : - package ‘translations’ is not available for Bioconductor version '3.12' - -A version of this package for your version of R might be available elsewhere, -see the ideas at -https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages + ‘/tmp/RtmpNiiCHE/downloaded_packages’ ================ -R PACKAGE INSTALLATION 222 / 240: usethis +R PACKAGE INSTALLATION 220 / 238: usethis ================ @@ -8449,26 +8658,26 @@ downloaded 327 KB The downloaded source packages are in - ‘/tmp/RtmpZccIpN/downloaded_packages’ + ‘/tmp/RtmpswzhNI/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/usethis_2.1.5.tar.gz' Content type 'application/x-gzip' length 334909 bytes (327 KB) ================================================== downloaded 327 KB -foundpkgs: usethis, /tmp/RtmpZccIpN/downloaded_packages/usethis_2.1.5.tar.gz -files: /tmp/RtmpZccIpN/downloaded_packages/usethis_2.1.5.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpZccIpN/downloaded_packages/usethis_2.1.5.tar.gz'' +foundpkgs: usethis, /tmp/RtmpswzhNI/downloaded_packages/usethis_2.1.5.tar.gz +files: /tmp/RtmpswzhNI/downloaded_packages/usethis_2.1.5.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpswzhNI/downloaded_packages/usethis_2.1.5.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpZccIpN/downloaded_packages’ + ‘/tmp/RtmpswzhNI/downloaded_packages’ ================ -R PACKAGE INSTALLATION 223 / 240: utf8 +R PACKAGE INSTALLATION 221 / 238: utf8 ================ @@ -8482,26 +8691,26 @@ downloaded 234 KB The downloaded source packages are in - ‘/tmp/RtmpD2Ey3h/downloaded_packages’ + ‘/tmp/Rtmp7VFtk0/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/utf8_1.2.2.tar.gz' Content type 'application/x-gzip' length 240327 bytes (234 KB) ================================================== downloaded 234 KB -foundpkgs: utf8, /tmp/RtmpD2Ey3h/downloaded_packages/utf8_1.2.2.tar.gz -files: /tmp/RtmpD2Ey3h/downloaded_packages/utf8_1.2.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpD2Ey3h/downloaded_packages/utf8_1.2.2.tar.gz'' +foundpkgs: utf8, /tmp/Rtmp7VFtk0/downloaded_packages/utf8_1.2.2.tar.gz +files: /tmp/Rtmp7VFtk0/downloaded_packages/utf8_1.2.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp7VFtk0/downloaded_packages/utf8_1.2.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpD2Ey3h/downloaded_packages’ + ‘/tmp/Rtmp7VFtk0/downloaded_packages’ ================ -R PACKAGE INSTALLATION 224 / 240: uuid +R PACKAGE INSTALLATION 222 / 238: uuid ================ @@ -8515,26 +8724,26 @@ downloaded 70 KB The downloaded source packages are in - ‘/tmp/RtmpKC09nQ/downloaded_packages’ + ‘/tmp/RtmpJraqC8/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/uuid_1.0-3.tar.gz' Content type 'application/x-gzip' length 72003 bytes (70 KB) ================================================== downloaded 70 KB -foundpkgs: uuid, /tmp/RtmpKC09nQ/downloaded_packages/uuid_1.0-3.tar.gz -files: /tmp/RtmpKC09nQ/downloaded_packages/uuid_1.0-3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpKC09nQ/downloaded_packages/uuid_1.0-3.tar.gz'' +foundpkgs: uuid, /tmp/RtmpJraqC8/downloaded_packages/uuid_1.0-3.tar.gz +files: /tmp/RtmpJraqC8/downloaded_packages/uuid_1.0-3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpJraqC8/downloaded_packages/uuid_1.0-3.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpKC09nQ/downloaded_packages’ + ‘/tmp/RtmpJraqC8/downloaded_packages’ ================ -R PACKAGE INSTALLATION 225 / 240: vctrs +R PACKAGE INSTALLATION 223 / 238: vctrs ================ @@ -8548,26 +8757,26 @@ downloaded 764 KB The downloaded source packages are in - ‘/tmp/Rtmph8EW8Q/downloaded_packages’ + ‘/tmp/Rtmp8DcXM7/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/vctrs_0.3.8.tar.gz' Content type 'application/x-gzip' length 782608 bytes (764 KB) ================================================== downloaded 764 KB -foundpkgs: vctrs, /tmp/Rtmph8EW8Q/downloaded_packages/vctrs_0.3.8.tar.gz -files: /tmp/Rtmph8EW8Q/downloaded_packages/vctrs_0.3.8.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmph8EW8Q/downloaded_packages/vctrs_0.3.8.tar.gz'' +foundpkgs: vctrs, /tmp/Rtmp8DcXM7/downloaded_packages/vctrs_0.3.8.tar.gz +files: /tmp/Rtmp8DcXM7/downloaded_packages/vctrs_0.3.8.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp8DcXM7/downloaded_packages/vctrs_0.3.8.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmph8EW8Q/downloaded_packages’ + ‘/tmp/Rtmp8DcXM7/downloaded_packages’ ================ -R PACKAGE INSTALLATION 226 / 240: viridisLite +R PACKAGE INSTALLATION 224 / 238: viridisLite ================ @@ -8581,26 +8790,26 @@ downloaded 1.2 MB The downloaded source packages are in - ‘/tmp/RtmpjEW2t5/downloaded_packages’ + ‘/tmp/RtmpqPTY0z/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/viridisLite_0.4.0.tar.gz' Content type 'application/x-gzip' length 1267080 bytes (1.2 MB) ================================================== downloaded 1.2 MB -foundpkgs: viridisLite, /tmp/RtmpjEW2t5/downloaded_packages/viridisLite_0.4.0.tar.gz -files: /tmp/RtmpjEW2t5/downloaded_packages/viridisLite_0.4.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpjEW2t5/downloaded_packages/viridisLite_0.4.0.tar.gz'' +foundpkgs: viridisLite, /tmp/RtmpqPTY0z/downloaded_packages/viridisLite_0.4.0.tar.gz +files: /tmp/RtmpqPTY0z/downloaded_packages/viridisLite_0.4.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpqPTY0z/downloaded_packages/viridisLite_0.4.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpjEW2t5/downloaded_packages’ + ‘/tmp/RtmpqPTY0z/downloaded_packages’ ================ -R PACKAGE INSTALLATION 227 / 240: waldo +R PACKAGE INSTALLATION 225 / 238: waldo ================ @@ -8614,26 +8823,26 @@ downloaded 32 KB The downloaded source packages are in - ‘/tmp/RtmpXqFydW/downloaded_packages’ + ‘/tmp/RtmpsgrcxE/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/waldo_0.3.1.tar.gz' Content type 'application/x-gzip' length 33728 bytes (32 KB) ================================================== downloaded 32 KB -foundpkgs: waldo, /tmp/RtmpXqFydW/downloaded_packages/waldo_0.3.1.tar.gz -files: /tmp/RtmpXqFydW/downloaded_packages/waldo_0.3.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpXqFydW/downloaded_packages/waldo_0.3.1.tar.gz'' +foundpkgs: waldo, /tmp/RtmpsgrcxE/downloaded_packages/waldo_0.3.1.tar.gz +files: /tmp/RtmpsgrcxE/downloaded_packages/waldo_0.3.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpsgrcxE/downloaded_packages/waldo_0.3.1.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpXqFydW/downloaded_packages’ + ‘/tmp/RtmpsgrcxE/downloaded_packages’ ================ -R PACKAGE INSTALLATION 228 / 240: webshot +R PACKAGE INSTALLATION 226 / 238: webshot ================ @@ -8647,26 +8856,26 @@ downloaded 154 KB The downloaded source packages are in - ‘/tmp/RtmpHD9fpw/downloaded_packages’ + ‘/tmp/RtmplQja9b/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/webshot_0.5.2.tar.gz' Content type 'application/x-gzip' length 157837 bytes (154 KB) ================================================== downloaded 154 KB -foundpkgs: webshot, /tmp/RtmpHD9fpw/downloaded_packages/webshot_0.5.2.tar.gz -files: /tmp/RtmpHD9fpw/downloaded_packages/webshot_0.5.2.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpHD9fpw/downloaded_packages/webshot_0.5.2.tar.gz'' +foundpkgs: webshot, /tmp/RtmplQja9b/downloaded_packages/webshot_0.5.2.tar.gz +files: /tmp/RtmplQja9b/downloaded_packages/webshot_0.5.2.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmplQja9b/downloaded_packages/webshot_0.5.2.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpHD9fpw/downloaded_packages’ + ‘/tmp/RtmplQja9b/downloaded_packages’ ================ -R PACKAGE INSTALLATION 229 / 240: whisker +R PACKAGE INSTALLATION 227 / 238: whisker ================ @@ -8680,26 +8889,26 @@ downloaded 27 KB The downloaded source packages are in - ‘/tmp/Rtmpj7K758/downloaded_packages’ + ‘/tmp/Rtmp49PM4d/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/whisker_0.4.tar.gz' Content type 'application/x-gzip' length 28574 bytes (27 KB) ================================================== downloaded 27 KB -foundpkgs: whisker, /tmp/Rtmpj7K758/downloaded_packages/whisker_0.4.tar.gz -files: /tmp/Rtmpj7K758/downloaded_packages/whisker_0.4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpj7K758/downloaded_packages/whisker_0.4.tar.gz'' +foundpkgs: whisker, /tmp/Rtmp49PM4d/downloaded_packages/whisker_0.4.tar.gz +files: /tmp/Rtmp49PM4d/downloaded_packages/whisker_0.4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp49PM4d/downloaded_packages/whisker_0.4.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpj7K758/downloaded_packages’ + ‘/tmp/Rtmp49PM4d/downloaded_packages’ ================ -R PACKAGE INSTALLATION 230 / 240: withr +R PACKAGE INSTALLATION 228 / 238: withr ================ @@ -8713,26 +8922,26 @@ downloaded 94 KB The downloaded source packages are in - ‘/tmp/RtmpxKePfc/downloaded_packages’ + ‘/tmp/RtmpC7v6Wi/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/withr_2.4.3.tar.gz' Content type 'application/x-gzip' length 96600 bytes (94 KB) ================================================== downloaded 94 KB -foundpkgs: withr, /tmp/RtmpxKePfc/downloaded_packages/withr_2.4.3.tar.gz -files: /tmp/RtmpxKePfc/downloaded_packages/withr_2.4.3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpxKePfc/downloaded_packages/withr_2.4.3.tar.gz'' +foundpkgs: withr, /tmp/RtmpC7v6Wi/downloaded_packages/withr_2.4.3.tar.gz +files: /tmp/RtmpC7v6Wi/downloaded_packages/withr_2.4.3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpC7v6Wi/downloaded_packages/withr_2.4.3.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpxKePfc/downloaded_packages’ + ‘/tmp/RtmpC7v6Wi/downloaded_packages’ ================ -R PACKAGE INSTALLATION 231 / 240: xfun +R PACKAGE INSTALLATION 229 / 238: xfun ================ @@ -8746,26 +8955,26 @@ downloaded 122 KB The downloaded source packages are in - ‘/tmp/RtmpTyn1mN/downloaded_packages’ + ‘/tmp/Rtmpj8kpr1/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/xfun_0.29.tar.gz' Content type 'application/x-gzip' length 125150 bytes (122 KB) ================================================== downloaded 122 KB -foundpkgs: xfun, /tmp/RtmpTyn1mN/downloaded_packages/xfun_0.29.tar.gz -files: /tmp/RtmpTyn1mN/downloaded_packages/xfun_0.29.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpTyn1mN/downloaded_packages/xfun_0.29.tar.gz'' +foundpkgs: xfun, /tmp/Rtmpj8kpr1/downloaded_packages/xfun_0.29.tar.gz +files: /tmp/Rtmpj8kpr1/downloaded_packages/xfun_0.29.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpj8kpr1/downloaded_packages/xfun_0.29.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpTyn1mN/downloaded_packages’ + ‘/tmp/Rtmpj8kpr1/downloaded_packages’ ================ -R PACKAGE INSTALLATION 232 / 240: XML +R PACKAGE INSTALLATION 230 / 238: XML ================ @@ -8779,26 +8988,26 @@ downloaded 947 KB The downloaded source packages are in - ‘/tmp/Rtmpoax0jC/downloaded_packages’ + ‘/tmp/RtmpbkRYI5/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/XML_3.99-0.8.tar.gz' Content type 'application/x-gzip' length 970694 bytes (947 KB) ================================================== downloaded 947 KB -foundpkgs: XML, /tmp/Rtmpoax0jC/downloaded_packages/XML_3.99-0.8.tar.gz -files: /tmp/Rtmpoax0jC/downloaded_packages/XML_3.99-0.8.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpoax0jC/downloaded_packages/XML_3.99-0.8.tar.gz'' +foundpkgs: XML, /tmp/RtmpbkRYI5/downloaded_packages/XML_3.99-0.8.tar.gz +files: /tmp/RtmpbkRYI5/downloaded_packages/XML_3.99-0.8.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpbkRYI5/downloaded_packages/XML_3.99-0.8.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmpoax0jC/downloaded_packages’ + ‘/tmp/RtmpbkRYI5/downloaded_packages’ ================ -R PACKAGE INSTALLATION 233 / 240: xml2 +R PACKAGE INSTALLATION 231 / 238: xml2 ================ @@ -8812,26 +9021,26 @@ downloaded 277 KB The downloaded source packages are in - ‘/tmp/RtmpRtKVuq/downloaded_packages’ + ‘/tmp/RtmpUpErvd/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/xml2_1.3.3.tar.gz' Content type 'application/x-gzip' length 283965 bytes (277 KB) ================================================== downloaded 277 KB -foundpkgs: xml2, /tmp/RtmpRtKVuq/downloaded_packages/xml2_1.3.3.tar.gz -files: /tmp/RtmpRtKVuq/downloaded_packages/xml2_1.3.3.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpRtKVuq/downloaded_packages/xml2_1.3.3.tar.gz'' +foundpkgs: xml2, /tmp/RtmpUpErvd/downloaded_packages/xml2_1.3.3.tar.gz +files: /tmp/RtmpUpErvd/downloaded_packages/xml2_1.3.3.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpUpErvd/downloaded_packages/xml2_1.3.3.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpRtKVuq/downloaded_packages’ + ‘/tmp/RtmpUpErvd/downloaded_packages’ ================ -R PACKAGE INSTALLATION 234 / 240: xopen +R PACKAGE INSTALLATION 232 / 238: xopen ================ @@ -8845,26 +9054,26 @@ downloaded 10 KB The downloaded source packages are in - ‘/tmp/RtmpNFMpJE/downloaded_packages’ + ‘/tmp/Rtmp2my45U/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/xopen_1.0.0.tar.gz' Content type 'application/x-gzip' length 11221 bytes (10 KB) ================================================== downloaded 10 KB -foundpkgs: xopen, /tmp/RtmpNFMpJE/downloaded_packages/xopen_1.0.0.tar.gz -files: /tmp/RtmpNFMpJE/downloaded_packages/xopen_1.0.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpNFMpJE/downloaded_packages/xopen_1.0.0.tar.gz'' +foundpkgs: xopen, /tmp/Rtmp2my45U/downloaded_packages/xopen_1.0.0.tar.gz +files: /tmp/Rtmp2my45U/downloaded_packages/xopen_1.0.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp2my45U/downloaded_packages/xopen_1.0.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpNFMpJE/downloaded_packages’ + ‘/tmp/Rtmp2my45U/downloaded_packages’ ================ -R PACKAGE INSTALLATION 235 / 240: xtable +R PACKAGE INSTALLATION 233 / 238: xtable ================ @@ -8878,26 +9087,26 @@ downloaded 551 KB The downloaded source packages are in - ‘/tmp/Rtmphl6Ucz/downloaded_packages’ + ‘/tmp/Rtmpq2rHEm/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/xtable_1.8-4.tar.gz' Content type 'application/x-gzip' length 564589 bytes (551 KB) ================================================== downloaded 551 KB -foundpkgs: xtable, /tmp/Rtmphl6Ucz/downloaded_packages/xtable_1.8-4.tar.gz -files: /tmp/Rtmphl6Ucz/downloaded_packages/xtable_1.8-4.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmphl6Ucz/downloaded_packages/xtable_1.8-4.tar.gz'' +foundpkgs: xtable, /tmp/Rtmpq2rHEm/downloaded_packages/xtable_1.8-4.tar.gz +files: /tmp/Rtmpq2rHEm/downloaded_packages/xtable_1.8-4.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpq2rHEm/downloaded_packages/xtable_1.8-4.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmphl6Ucz/downloaded_packages’ + ‘/tmp/Rtmpq2rHEm/downloaded_packages’ ================ -R PACKAGE INSTALLATION 236 / 240: XVector +R PACKAGE INSTALLATION 234 / 238: XVector ================ @@ -8919,7 +9128,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 237 / 240: yaml +R PACKAGE INSTALLATION 235 / 238: yaml ================ @@ -8933,26 +9142,26 @@ downloaded 90 KB The downloaded source packages are in - ‘/tmp/Rtmp2SAnVQ/downloaded_packages’ + ‘/tmp/RtmpvjgUUv/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/yaml_2.2.1.tar.gz' Content type 'application/x-gzip' length 92670 bytes (90 KB) ================================================== downloaded 90 KB -foundpkgs: yaml, /tmp/Rtmp2SAnVQ/downloaded_packages/yaml_2.2.1.tar.gz -files: /tmp/Rtmp2SAnVQ/downloaded_packages/yaml_2.2.1.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmp2SAnVQ/downloaded_packages/yaml_2.2.1.tar.gz'' +foundpkgs: yaml, /tmp/RtmpvjgUUv/downloaded_packages/yaml_2.2.1.tar.gz +files: /tmp/RtmpvjgUUv/downloaded_packages/yaml_2.2.1.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpvjgUUv/downloaded_packages/yaml_2.2.1.tar.gz'' The downloaded source packages are in - ‘/tmp/Rtmp2SAnVQ/downloaded_packages’ + ‘/tmp/RtmpvjgUUv/downloaded_packages’ ================ -R PACKAGE INSTALLATION 238 / 240: zip +R PACKAGE INSTALLATION 236 / 238: zip ================ @@ -8966,26 +9175,26 @@ downloaded 111 KB The downloaded source packages are in - ‘/tmp/RtmpJYWet6/downloaded_packages’ + ‘/tmp/RtmprPCCj5/downloaded_packages’ system (cmd0): /usr/lib/R/bin/R CMD INSTALL trying URL 'https://cran.irsn.fr/src/contrib/zip_2.2.0.tar.gz' Content type 'application/x-gzip' length 114391 bytes (111 KB) ================================================== downloaded 111 KB -foundpkgs: zip, /tmp/RtmpJYWet6/downloaded_packages/zip_2.2.0.tar.gz -files: /tmp/RtmpJYWet6/downloaded_packages/zip_2.2.0.tar.gz -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmpJYWet6/downloaded_packages/zip_2.2.0.tar.gz'' +foundpkgs: zip, /tmp/RtmprPCCj5/downloaded_packages/zip_2.2.0.tar.gz +files: /tmp/RtmprPCCj5/downloaded_packages/zip_2.2.0.tar.gz +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/RtmprPCCj5/downloaded_packages/zip_2.2.0.tar.gz'' The downloaded source packages are in - ‘/tmp/RtmpJYWet6/downloaded_packages’ + ‘/tmp/RtmprPCCj5/downloaded_packages’ ================ -R PACKAGE INSTALLATION 239 / 240: zlibbioc +R PACKAGE INSTALLATION 237 / 238: zlibbioc ================ @@ -9007,7 +9216,7 @@ Warning: package(s) not installed when version(s) same as current; use `force = ================ -R PACKAGE INSTALLATION 240 / 240: ggplot2 +R PACKAGE INSTALLATION 238 / 238: ggplot2 ================ @@ -9029,7 +9238,7 @@ now dyn.load("/usr/local/lib/R/site-library/glue/libs/glue.so") ... now dyn.load("/usr/local/lib/R/site-library/purrr/libs/purrr.so") ... Downloading package from url: https://cran.irsn.fr//src/contrib/Archive/ggplot2/ggplot2_3.3.3.tar.gz system (cmd0): /usr/lib/R/bin/R CMD INSTALL -1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpg7CBaL/remotes23ed5142ee81/ggplot2'' +1): succeeded '/usr/lib/R/bin/R CMD INSTALL -l '/usr/local/lib/R/site-library' '/tmp/Rtmpo8JGLQ/remotes291e18445b27/ggplot2'' @@ -9067,6 +9276,7 @@ brew brew /usr/local/lib/R/site-library brio brio /usr/local/lib/R/site-library broom broom /usr/local/lib/R/site-library cachem cachem /usr/local/lib/R/site-library +Cairo Cairo /usr/local/lib/R/site-library callr callr /usr/local/lib/R/site-library car car /usr/local/lib/R/site-library carData carData /usr/local/lib/R/site-library @@ -9355,6 +9565,7 @@ brew 1.0-6 <NA> brio 1.1.3 <NA> broom 0.7.10 <NA> cachem 1.0.6 <NA> +Cairo 1.5-14 <NA> callr 3.7.0 <NA> car 3.0-12 <NA> carData 3.0-4 <NA> @@ -9636,7 +9847,7 @@ apt-get autoremove Reading package lists... Building dependency tree... Reading state information... -0 upgraded, 0 newly installed, 0 to remove and 179 not upgraded. +0 upgraded, 0 newly installed, 0 to remove and 173 not upgraded. diff --git a/R/v4.0.5/extended/v1.0/installed_r_packages.txt b/R/v4.0.5/extended/v1.0/installed_r_packages.txt index 7ce4371663d8c7217089ddc46346dcfa4620ba8d..c3ed25774b495ba8ffb69e488bc4a6efa035df03 100644 --- a/R/v4.0.5/extended/v1.0/installed_r_packages.txt +++ b/R/v4.0.5/extended/v1.0/installed_r_packages.txt @@ -1,288 +1,289 @@ - Package LibPath Version Priority Depends Imports LinkingTo Suggests Enhances License License_is_FOSS License_restricts_use OS_type MD5sum NeedsCompilation Built -abind abind /usr/local/lib/R/site-library 1.4-5 NA R (>= 1.5.0) methods, utils NA NA NA LGPL (>= 2) NA NA NA NA no 4.0.5 -annotate annotate /usr/local/lib/R/site-library 1.68.0 NA R (>= 2.10), AnnotationDbi (>= 1.27.5), XML Biobase, DBI, xtable, graphics, utils, stats, methods,BiocGenerics (>= 0.13.8), httr NA hgu95av2.db, genefilter, Biostrings (>= 2.25.10), IRanges,rae230a.db, rae230aprobe, tkWidgets, GO.db, org.Hs.eg.db,org.Mm.eg.db, hom.Hs.inp.db, humanCHRLOC, Rgraphviz, RUnit, NA Artistic-2.0 NA NA NA NA no 4.0.5 -AnnotationDbi AnnotationDbi /usr/local/lib/R/site-library 1.52.0 NA R (>= 2.7.0), methods, utils, stats4, BiocGenerics (>=0.29.2), Biobase (>= 1.17.0), IRanges DBI, RSQLite, S4Vectors (>= 0.9.25) NA hgu95av2.db, GO.db, org.Sc.sgd.db, org.At.tair.db, KEGG.db,RUnit, TxDb.Hsapiens.UCSC.hg19.knownGene, hom.Hs.inp.db,org.Hs.eg.db, reactome.db, AnnotationForge, graph,EnsDb.Hsapiens.v75, BiocStyle, knitr NA Artistic-2.0 NA NA NA NA no 4.0.5 -askpass askpass /usr/local/lib/R/site-library 1.1 NA NA sys (>= 2.1) NA testthat NA MIT + file LICENSE NA NA NA NA yes 4.0.5 -assertthat assertthat /usr/local/lib/R/site-library 0.2.1 NA NA tools NA testthat, covr NA GPL-3 NA NA NA NA no 4.0.5 -backports backports /usr/local/lib/R/site-library 1.4.1 NA R (>= 3.0.0) NA NA NA NA GPL-2 | GPL-3 NA NA NA NA yes 4.0.5 -base64enc base64enc /usr/local/lib/R/site-library 0.1-3 NA R (>= 2.9.0) NA NA NA png GPL-2 | GPL-3 NA NA NA NA yes 4.0.5 -BH BH /usr/local/lib/R/site-library 1.78.0-0 NA NA NA NA NA NA BSL-1.0 NA NA NA NA no 4.0.5 -Biobase Biobase /usr/local/lib/R/site-library 2.50.0 NA R (>= 2.10), BiocGenerics (>= 0.27.1), utils methods NA tools, tkWidgets, ALL, RUnit, golubEsets NA Artistic-2.0 NA NA NA NA yes 4.0.5 -BiocGenerics BiocGenerics /usr/local/lib/R/site-library 0.36.1 NA R (>= 4.0.0), methods, utils, graphics, stats, parallel methods, utils, graphics, stats, parallel NA Biobase, S4Vectors, IRanges, GenomicRanges, DelayedArray,Biostrings, Rsamtools, AnnotationDbi, affy, affyPLM, DESeq2,flowClust, MSnbase, annotate, RUnit NA Artistic-2.0 NA NA NA NA no 4.0.5 -BiocManager BiocManager /usr/local/lib/R/site-library 1.30.16 NA NA utils NA BiocVersion, remotes, rmarkdown, testthat, withr, curl, knitr NA Artistic-2.0 NA NA NA NA no 4.0.5 -BiocParallel BiocParallel /usr/local/lib/R/site-library 1.24.1 NA methods stats, utils, futile.logger, parallel, snow BH BiocGenerics, tools, foreach, BatchJobs, BBmisc, doParallel,Rmpi, GenomicRanges, RNAseqData.HNRNPC.bam.chr14,TxDb.Hsapiens.UCSC.hg19.knownGene, VariantAnnotation,Rsamtools, GenomicAlignments, ShortRead, codetools, RUnit,BiocStyle, knitr, batchtools, data.table NA GPL-2 | GPL-3 NA NA NA NA yes 4.0.5 -BiocVersion BiocVersion /usr/local/lib/R/site-library 3.12.0 NA R (>= 4.0.0) NA NA NA NA Artistic-2.0 NA NA NA NA no 4.0.5 -Biostrings Biostrings /usr/local/lib/R/site-library 2.58.0 NA R (>= 3.5.0), methods, BiocGenerics (>= 0.31.5), S4Vectors (>=0.27.12), IRanges (>= 2.23.9), XVector (>= 0.29.2) methods, utils, grDevices, graphics, stats, crayon S4Vectors, IRanges, XVector BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>=1.3.11), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),BSgenome.Hsapiens.UCSC.hg18, drosophila2probe, hgu95av2probe,hgu133aprobe, GenomicFeatures (>= 1.3.14), hgu95av2cdf, affy(>= 1.41.3), affydata (>= 1.11.5), RUnit Rmpi Artistic-2.0 NA NA NA NA yes 4.0.5 -bit bit /usr/local/lib/R/site-library 4.0.4 NA R (>= 2.9.2) NA NA testthat (>= 0.11.0), roxygen2, knitr, rmarkdown,microbenchmark, bit64 (>= 4.0.0), ff (>= 4.0.0) NA GPL-2 | GPL-3 NA NA NA NA yes 4.0.5 -bit64 bit64 /usr/local/lib/R/site-library 4.0.5 NA R (>= 3.0.1), bit (>= 4.0.0), utils, methods, stats NA NA NA NA GPL-2 | GPL-3 NA NA NA NA yes 4.0.5 -bitops bitops /usr/local/lib/R/site-library 1.0-7 NA NA NA NA NA NA GPL (>= 2) NA NA NA NA yes 4.0.5 -blob blob /usr/local/lib/R/site-library 1.2.2 NA NA methods, rlang, vctrs (>= 0.2.1) NA covr, crayon, pillar (>= 1.2.1), testthat NA MIT + file LICENSE NA NA NA NA no 4.0.5 -brew brew /usr/local/lib/R/site-library 1.0-6 NA NA NA NA NA NA GPL-2 NA NA NA NA NA 4.0.5 -brio brio /usr/local/lib/R/site-library 1.1.3 NA NA NA NA covr, testthat (>= 2.1.0) NA MIT + file LICENSE NA NA NA NA yes 4.0.5 -broom broom /usr/local/lib/R/site-library 0.7.10 NA R (>= 3.1) backports, dplyr (>= 1.0.0), 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methods NA Part of R 4.0.5 NA NA NA NA NA 4.0.5 +boot /usr/lib/R/library 1.3-27 recommended R (>= 3.0.0), graphics, stats NA NA MASS, survival NA Unlimited NA NA NA NA no 4.0.3 +class /usr/lib/R/library 7.3-18 recommended R (>= 3.0.0), stats, utils MASS NA NA NA GPL-2 | GPL-3 NA NA NA NA yes 4.0.3 +cluster /usr/lib/R/library 2.1.1 recommended R (>= 3.4.0) graphics, grDevices, stats, utils NA MASS, Matrix NA GPL (>= 2) NA NA NA NA yes 4.0.3 +codetools /usr/lib/R/library 0.2-18 recommended R (>= 2.1) NA NA NA NA GPL NA NA NA NA no 4.0.3 +compiler /usr/lib/R/library 4.0.5 base NA NA NA NA NA Part of R 4.0.5 NA NA NA NA NA 4.0.5 +datasets /usr/lib/R/library 4.0.5 base NA NA NA NA NA Part of R 4.0.5 NA NA NA NA NA 4.0.5 +foreign /usr/lib/R/library 0.8-81 recommended R (>= 4.0.0) methods, utils, stats NA NA NA GPL (>= 2) NA NA NA NA yes 4.0.3 +graphics /usr/lib/R/library 4.0.5 base NA grDevices NA NA NA Part of R 4.0.5 NA NA NA NA yes 4.0.5 +grDevices /usr/lib/R/library 4.0.5 base NA NA NA KernSmooth NA Part of R 4.0.5 NA NA NA NA yes 4.0.5 +grid /usr/lib/R/library 4.0.5 base NA grDevices, utils NA lattice NA Part of R 4.0.5 NA NA NA NA yes 4.0.5 +KernSmooth /usr/lib/R/library 2.23-18 recommended R (>= 2.5.0), stats NA NA MASS NA Unlimited NA NA NA NA yes 4.0.3 +lattice /usr/lib/R/library 0.20-41 recommended R (>= 3.0.0) grid, grDevices, graphics, stats, utils NA KernSmooth, MASS, latticeExtra chron GPL (>= 2) NA NA NA NA yes 4.0.0 +MASS /usr/lib/R/library 7.3-53.1 recommended R (>= 3.1.0), grDevices, graphics, stats, utils methods NA lattice, nlme, nnet, survival NA GPL-2 | GPL-3 NA NA NA NA yes 4.0.3 +Matrix /usr/lib/R/library 1.3-2 recommended R (>= 3.6.0) methods, graphics, grid, stats, utils, lattice NA expm, MASS MatrixModels, graph, SparseM, sfsmisc, igraph, maptools, sp,spdep GPL (>= 2) | file LICENCE NA NA NA NA yes 4.0.3 +methods /usr/lib/R/library 4.0.5 base NA utils, stats NA codetools NA Part of R 4.0.5 NA NA NA NA yes 4.0.5 +mgcv /usr/lib/R/library 1.8-34 recommended R (>= 3.6.0), nlme (>= 3.1-64) methods, stats, graphics, Matrix, splines, utils NA parallel, survival, MASS NA GPL (>= 2) NA NA NA NA yes 4.0.4 +nlme /usr/lib/R/library 3.1-152 recommended R (>= 3.4.0) graphics, stats, utils, lattice NA Hmisc, MASS NA GPL (>= 2) | file LICENCE NA NA NA NA yes 4.0.3 +nnet /usr/lib/R/library 7.3-15 recommended R (>= 3.0.0), stats, utils NA NA MASS NA GPL-2 | GPL-3 NA NA NA NA yes 4.0.3 +parallel /usr/lib/R/library 4.0.5 base NA tools, compiler NA methods snow, nws, Rmpi Part of R 4.0.5 NA NA NA NA yes 4.0.5 +rpart /usr/lib/R/library 4.1-15 recommended R (>= 2.15.0), graphics, stats, grDevices NA NA survival NA GPL-2 | GPL-3 NA NA NA NA yes 4.0.0 +spatial /usr/lib/R/library 7.3-13 recommended R (>= 3.0.0), graphics, stats, utils NA NA MASS NA GPL-2 | GPL-3 NA NA NA NA yes 4.0.3 +splines /usr/lib/R/library 4.0.5 base NA graphics, stats NA Matrix, methods NA Part of R 4.0.5 NA NA NA NA yes 4.0.5 +stats /usr/lib/R/library 4.0.5 base NA utils, grDevices, graphics NA MASS, Matrix, SuppDists, methods, stats4 NA Part of R 4.0.5 NA NA NA NA yes 4.0.5 +stats4 /usr/lib/R/library 4.0.5 base NA graphics, methods, stats NA NA NA Part of R 4.0.5 NA NA NA NA NA 4.0.5 +survival /usr/lib/R/library 3.2-7 recommended R (>= 3.4.0) graphics, Matrix, methods, splines, stats, utils NA NA NA LGPL (>= 2) NA NA NA NA yes 4.0.2 +tcltk /usr/lib/R/library 4.0.5 base NA utils NA NA NA Part of R 4.0.5 NA NA NA NA yes 4.0.5 +tools /usr/lib/R/library 4.0.5 base NA NA NA codetools, methods, xml2, curl, commonmark NA Part of R 4.0.5 NA NA NA NA yes 4.0.5 +utils /usr/lib/R/library 4.0.5 base NA NA NA methods, xml2, commonmark NA Part of R 4.0.5 NA NA NA NA yes 4.0.5 diff --git a/R/v4.0.5/extended/v1.0/problem.txt b/R/v4.0.5/extended/v1.0/problem.txt deleted file mode 100644 index e5cab183ccf60232e5ef02fe1f86aab207365889..0000000000000000000000000000000000000000 --- a/R/v4.0.5/extended/v1.0/problem.txt +++ /dev/null @@ -1 +0,0 @@ -Sartools Cairo and translations not installed diff --git a/README.md b/README.md index fffb81751f76ae2929a8e412d8e4f6be7a2cba85..c3667dacf421f1f654a846e20d0c43c52b152bed 100644 --- a/README.md +++ b/README.md @@ -69,16 +69,11 @@ Hub-CDB and Institut Pasteur Use the gitlab tag of the docker image (e.g., gitlab_v5.0) to get the description of the modifications below -### v6.4 - -Dockerfiles debugged: <br /> -R\v4.0.5\extended at date 20211223: pandoc added - ### v6.3 Dockerfiles modified: <br /> -R\v4.0.5\extended at date 20211223: 1) log of the building execution available in the image, 2) version frozen for the ubuntu and R packages, 3) name of the image improved +R\v4.0.5\extended at date 20211228: 1) log of the building execution + table of the installed packages available in the image, 2) version frozen for the ubuntu and R packages, 3) name of the image improved ### v6.2