diff --git a/README.md b/README.md index 95f41468a9669f18fe2b68847a3acaf56230996d..39c9a9ec32db9f8fdd039a54388f2dcd49052bc0 100644 --- a/README.md +++ b/README.md @@ -71,6 +71,11 @@ Hub-CDB Institut Pasteur & DSI Institut Pasteur Use the gitlab tag of the docker image (e.g., gitlab_v5.0) to get the description of the modifications below +### 9.1 + +Dockerfiles added: <br /> +python/3.9.10/changeo_presto/v1.0 at date 20221007: from ubuntu:20.04 & python v3.9.10 <br /> + ### 9.1 diff --git a/python/v3.9.10/changeo_presto/v1.0/building.log b/python/v3.9.10/changeo_presto/v1.0/building.log index 3ede8f5099bcb4f71636585e6e8a9059d5c50dfa..5b85658348889c9a4bc45f251fa1c925054ff625 100644 --- a/python/v3.9.10/changeo_presto/v1.0/building.log +++ b/python/v3.9.10/changeo_presto/v1.0/building.log @@ -14,7 +14,7 @@ pip install Collecting changeo Downloading changeo-1.2.0.tar.gz (150 kB) Collecting presto - Downloading presto-0.7.0.tar.gz (109 kB) + Downloading presto-0.7.1.tar.gz (108 kB) Requirement already satisfied: numpy>=1.8 in /usr/local/lib/python3.9/site-packages (from changeo) (1.22.3) Collecting scipy>=0.14 Downloading scipy-1.9.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (43.9 MB) @@ -33,23 +33,23 @@ Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.9/site-package Building wheels for collected packages: changeo, presto, airr, yamlordereddictloader Building wheel for changeo (setup.py): started Building wheel for changeo (setup.py): finished with status 'done' - Created wheel for changeo: filename=changeo-1.2.0-py3-none-any.whl size=151660 sha256=1da03d675a1f10a4993486776169a5bbf3e4ca68ba36753db738aba8f7412b70 + Created wheel for changeo: filename=changeo-1.2.0-py3-none-any.whl size=151660 sha256=f12e2054fd3b9c931d06ab0918a470941029a18abc8c67e9fa7c4ffc0244c509 Stored in directory: /root/.cache/pip/wheels/32/a1/50/cf5b69a2449ebcb265a1ee6f6b809c4bc4a627aac4248bd626 Building wheel for presto (setup.py): started Building wheel for presto (setup.py): finished with status 'done' - Created wheel for presto: filename=presto-0.7.0-py3-none-any.whl size=118994 sha256=cde97b319ba72f3d38928711992fd9a6f6de5876620e6289ccf8bf0d748179b1 - Stored in directory: /root/.cache/pip/wheels/88/30/16/a90689aa0488c9f983dde0e83a40d21ec0f310dde44ffe89d7 + Created wheel for presto: filename=presto-0.7.1-py3-none-any.whl size=118759 sha256=d78d55b6fc87f5bd0fc8b87a098ae78f8a0434c34760f1288d53b752118dac90 + Stored in directory: /root/.cache/pip/wheels/5b/7a/39/8b014d72018c603ec142e9464aab27c09300969ffa5d818d9a Building wheel for airr (setup.py): started Building wheel for airr (setup.py): finished with status 'done' - Created wheel for airr: filename=airr-1.4.1-py3-none-any.whl size=46411 sha256=d931840e96e51768b39b2dcc662d9552814f1d02fae65c04feb793b5c6088393 + Created wheel for airr: filename=airr-1.4.1-py3-none-any.whl size=46411 sha256=c75d5cc2fefb34f8620c43dd5fc5833914deef3b5623d958ec4b90462e975b29 Stored in directory: /root/.cache/pip/wheels/63/fe/47/0adfcb284d62d9cdfe3bdaee34a5915d66fdb7fe05b4e49917 Building wheel for yamlordereddictloader (setup.py): started Building wheel for yamlordereddictloader (setup.py): finished with status 'done' - Created wheel for yamlordereddictloader: filename=yamlordereddictloader-0.4.0-py3-none-any.whl size=4069 sha256=23d83bee7ca69f8e4e1ddf42253b3ad0cc476db714e14d104d40f9aca6434aae + Created wheel for yamlordereddictloader: filename=yamlordereddictloader-0.4.0-py3-none-any.whl size=4069 sha256=76ca69a4c5b78b47570bea767210fb79110fdd9f31b91eee00528cac8cf0ff67 Stored in directory: /root/.cache/pip/wheels/26/be/2c/114a2da8d1eca28fc4ec769eab3304e854a8a2b5ca217ff9c5 Successfully built changeo presto airr yamlordereddictloader Installing collected packages: PyYAML, yamlordereddictloader, scipy, presto, airr, changeo -Successfully installed PyYAML-6.0 airr-1.4.1 changeo-1.2.0 presto-0.7.0 scipy-1.9.1 yamlordereddictloader-0.4.0 +Successfully installed PyYAML-6.0 airr-1.4.1 changeo-1.2.0 presto-0.7.1 scipy-1.9.1 yamlordereddictloader-0.4.0 @@ -77,7 +77,7 @@ mygene 3.2.2 numpy 1.22.3 pandas 1.4.1 pip 21.2.4 -presto 0.7.0 +presto 0.7.1 python-dateutil 2.8.2 pytz 2021.3 PyYAML 6.0 diff --git a/ubuntu/v20.04/ig_analysis/v1.0/Dockerfile b/ubuntu/v20.04/ig_analysis/v1.0/Dockerfile index cb383e6fe7914e53d955652231b9b0c56bcaad33..546915eb7c0c843aa50c0023abb88b9cce92c339 100644 --- a/ubuntu/v20.04/ig_analysis/v1.0/Dockerfile +++ b/ubuntu/v20.04/ig_analysis/v1.0/Dockerfile @@ -63,6 +63,14 @@ RUN echo "\n\n\n\n================\n\napt-get update\n\n================\n\n\n\n && apt -y install $APT_LINUX_LIB \ | tee -a building.log \ +RUN echo "\n\n\n\n================\n\Immcantation packages install (changeo & presto)\n\n================\n\n\n\n" >> /building.log \ + && cd /usr/bin/ + && git clone https://bitbucket.org/kleinstein/igphyml + | tee -a /building.log \ + && export PATH="/usr/bin/igphyml/src:$PATH" # for igphyml tools + + + RUN echo "\n\n\n\n================\n\IgPhyML install\n\n================\n\n\n\n" >> /building.log \ && cd /usr/bin/ && git clone https://bitbucket.org/kleinstein/igphyml