diff --git a/README.md b/README.md index e612e0b14f223a6238723e0819034e8a8ec87271..52bff6e5c666cb88622713e773c76ac71c5e9e99 100644 --- a/README.md +++ b/README.md @@ -113,10 +113,8 @@ Modify the second line of the code below, and run from where the *main.nf* and * ``` HOME_INI=$HOME HOME="${HELIXHOME}/nf_column_reorder/" # $HOME changed to allow the creation of .nextflow into /$HELIXHOME/nf_column_reorder/, for instance. See NFX_HOME in the nextflow software script -trap '' SIGINT nextflow run --modules ${MODULES} main.nf -c nextflow.config HOME=$HOME_INI -trap SIGINT ``` @@ -128,11 +126,9 @@ Modify the first and third lines of the code below, and run (results will be whe VERSION="v1.0" HOME_INI=$HOME HOME="${HELIXHOME}/nf_column_reorder/" # $HOME changed to allow the creation of .nextflow into /$HELIXHOME/nf_column_reorder/, for instance. See NFX_HOME in the nextflow software script -trap '' SIGINT nextflow run --modules ${MODULES} gael-millot/nf_column_reorder -r $VERSION -c $HOME/nextflow.config #github, or nextflow run --modules ${MODULES} http://github.com/gael-millot/nf_column_reorder -r $VERSION -c $HOME/nextflow.config nextflow run --modules ${MODULES} -hub pasteur gmillot/nf_column_reorder -r $VERSION -c $HOME/nextflow.config # gitlab HOME=$HOME_INI -trap SIGINT ```