diff --git a/README.md b/README.md
index 2d6057581673b468603ba8ef9f9ce74149f70bac..1ef449c51dee3f8c4a7cada8e1ad3937cd08c66a 100644
--- a/README.md
+++ b/README.md
@@ -28,7 +28,7 @@ Use [slivar](https://github.com/brentp/slivar) on a VCF file to:
 <br /><ul><li>annotate
 <br /></li><li>filter (according to quality, family criteria, ect.)
 </li><br /><br />
-Return both a .vcf and a .tsv file
+Return both an indexed .vcf.gz and a .tsv.gz file
 <br /><br />
 Warning: the code uses these following commands of slivar (see protocol 143 for details):
 
@@ -62,8 +62,8 @@ Thus, pay attention with the family_expr, sample and info parameters in the sliv
 <br />
 | File | Description |
 | --- | --- |
-| **PL_family_WGS_slivar_1664358140** | example of filtering and annotation, obtained using the whole dataset sample_path="/pasteur/zeus/projets/p02/ghfc_wgs_zeus/WGS/Dyslexia/vcf/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz" |
-| **PL_family_WGS_slivar_1664357562** | example of annotation without slivar filtering, obtained using the example dataset sample_path="/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf" |
+| **PL_family_WGS_slivar_1664813804** | example of filtering and annotation, obtained using the whole dataset sample_path="/pasteur/zeus/projets/p02/ghfc_wgs_zeus/WGS/Dyslexia/vcf/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz" |
+| **PL_family_WGS_slivar_1664807682** | example of annotation without slivar filtering, obtained using the example dataset sample_path="/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf" |
 
 &nbsp;&nbsp;&nbsp;&nbsp;See the OUTPUT section for the description of the folder and files.
 
@@ -200,9 +200,9 @@ rm -rf /pasteur/sonic/homes/gmillot/.nextflow/assets/gmillot*
 
 **reports**: folder containing all the reports of the different processes including the *slivar_vcf_extraction.config* file used.
 <br /><br />
-**res.vcf**: annotated and filtered VCF file.
+**res.vcf.gz**: annotated and filtered VCF file
 <br /><br />
-**res.tsv**: VCF file converted into a table, each row representing a different variant and a different patient, and with columns (depending on the tsv_info parameter):
+**res.tsv.gz**: VCF file converted into a table, each row representing a different variant and a different patient, and with columns (depending on the tsv_info parameter):
 <br />
 
 | File | Description |
@@ -283,6 +283,11 @@ Gitlab developers
 ## WHAT'S NEW IN
 
 
+### v2.0
+
+Compression added, tsv file optional
+
+
 ### v1.0
 
 Everything
diff --git a/example of results/PL_family_WGS_slivar_1664357562/reports/dag.dot b/example of results/PL_family_WGS_slivar_1664357562/reports/dag.dot
deleted file mode 100644
index 87727f1f57c21cd779a31a153630602386d3ef92..0000000000000000000000000000000000000000
--- a/example of results/PL_family_WGS_slivar_1664357562/reports/dag.dot	
+++ /dev/null
@@ -1,54 +0,0 @@
-digraph "dag" {
-p1 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p1 -> p11 [label="vcf"];
-
-p2 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p2 -> p11 [label="fun"];
-
-p3 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p3 -> p11 [label="annot1"];
-
-p4 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p4 -> p11 [label="annot2"];
-
-p5 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p5 -> p11 [label="ped"];
-
-p6 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p6 -> p11 [label="sample_expr"];
-
-p7 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p7 -> p11 [label="pedigree_expr"];
-
-p8 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p8 -> p11 [label="filter"];
-
-p9 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p9 -> p11 [label="tsv_sample"];
-
-p10 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p10 -> p11 [label="tsv_info"];
-
-p12 [shape=point,label="",fixedsize=true,width=0.1];
-p15 [label="Backup"];
-p12 -> p15 [label="config_file"];
-
-p13 [shape=point,label="",fixedsize=true,width=0.1];
-p15 [label="Backup"];
-p13 -> p15 [label="log_file"];
-
-p14 [shape=point,label="",fixedsize=true,width=0.1];
-p15 [label="Backup"];
-p14 -> p15 [label="fun"];
-
-}
diff --git a/example of results/PL_family_WGS_slivar_1664357562/reports/trace.txt b/example of results/PL_family_WGS_slivar_1664357562/reports/trace.txt
deleted file mode 100644
index b6a8b0e4bdc76e6f16579427ee618d8674a8a544..0000000000000000000000000000000000000000
--- a/example of results/PL_family_WGS_slivar_1664357562/reports/trace.txt	
+++ /dev/null
@@ -1,4 +0,0 @@
-task_id	hash	native_id	name	status	exit	submit	duration	realtime	%cpu	peak_rss	peak_vmem	rchar	wchar
-3	43/9f2a52	4517	Backup	COMPLETED	0	2022-09-28 11:32:43.464	855ms	8ms	10.1%	0	0	104.1 KB	339 B
-1	c2/724f64	4610	WorkflowVersion	COMPLETED	0	2022-09-28 11:32:43.565	1.2s	469ms	17.7%	3.1 MB	19.2 MB	145.4 KB	1.6 KB
-2	cf/fc450f	4553	slivar	COMPLETED	0	2022-09-28 11:32:43.516	9.8s	9.2s	51.2%	1.9 GB	2 GB	438.3 MB	206.7 KB
diff --git a/example of results/PL_family_WGS_slivar_1664357562/res.tsv b/example of results/PL_family_WGS_slivar_1664357562/res.tsv
deleted file mode 100644
index f67efb8d0346daee361253e093eb71fcfd618b5b..0000000000000000000000000000000000000000
--- a/example of results/PL_family_WGS_slivar_1664357562/res.tsv	
+++ /dev/null
@@ -1,111 +0,0 @@
-#mode	family_id	sample_id	chr:pos:ref:alt	genotype(sample,dad,mom)	AC	AF	AN	BaseQRankSum	DB	DP	ExcessHet	FS	InbreedingCoeff	MLEAC	MLEAF	MQ	MQRankSum	QD	ReadPosRankSum	SOR	VQSLOD	culprit	CSQ	cadd_phred	gno_non_neuro_af_all	gno_non_neuro_af_nfe	gno_non_neuro_nhomalt_all	gno_non_neuro_nhomalt_nfe	highest_impact_order	all	depths(sample,dad,mom)	allele_balance(sample,dad,mom)
-all	fam_pl	C0011JY	chr1:10146:AC:A	0,.,.	7	0.318	22	0.341	DB	1004	0.5742	32.034	0.2598	7	0.318	35.31	-0.403	10.39	1.02	3.687	1.66	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1863|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1722|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4257|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1725|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1727|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4264|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||	-1	0.521818	0.481386	276	141	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			143,.,.	0,.,.	
-all	fam_pl	C0011JZ	chr1:10146:AC:A	1,.,.	7	0.318	22	0.341	DB	1004	0.5742	32.034	0.2598	7	0.318	35.31	-0.403	10.39	1.02	3.687	1.66	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1863|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1722|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4257|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1725|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1727|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4264|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||	-1	0.521818	0.481386	276	141	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			21,.,.	0.809524,.,.	
-all	fam_pl	C0011K1	chr1:10146:AC:A	2,.,.	7	0.318	22	0.341	DB	1004	0.5742	32.034	0.2598	7	0.318	35.31	-0.403	10.39	1.02	3.687	1.66	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1863|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1722|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4257|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1725|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1727|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4264|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||	-1	0.521818	0.481386	276	141	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			13,.,.	0.846154,.,.	
-all	fam_pl	C0011K2	chr1:10146:AC:A	0,.,.	7	0.318	22	0.341	DB	1004	0.5742	32.034	0.2598	7	0.318	35.31	-0.403	10.39	1.02	3.687	1.66	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1863|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1722|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4257|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1725|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1727|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4264|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||	-1	0.521818	0.481386	276	141	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			126,.,.	0,.,.	
-all	fam_pl	C0011K3	chr1:10146:AC:A	1,.,.	7	0.318	22	0.341	DB	1004	0.5742	32.034	0.2598	7	0.318	35.31	-0.403	10.39	1.02	3.687	1.66	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1863|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1722|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4257|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1725|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1727|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4264|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||	-1	0.521818	0.481386	276	141	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			22,.,.	0.681818,.,.	
-all	fam_pl	C0011K5	chr1:10146:AC:A	1,.,.	7	0.318	22	0.341	DB	1004	0.5742	32.034	0.2598	7	0.318	35.31	-0.403	10.39	1.02	3.687	1.66	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1863|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1722|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4257|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1725|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1727|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4264|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||	-1	0.521818	0.481386	276	141	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			12,.,.	0.666667,.,.	
-all	fam_pl	C0011KA	chr1:10146:AC:A	0,.,0	7	0.318	22	0.341	DB	1004	0.5742	32.034	0.2598	7	0.318	35.31	-0.403	10.39	1.02	3.687	1.66	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1863|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1722|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4257|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1725|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1727|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4264|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||	-1	0.521818	0.481386	276	141	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			105,.,126	0,.,0	
-all	fam_pl	C0011KB	chr1:10146:AC:A	0,.,0	7	0.318	22	0.341	DB	1004	0.5742	32.034	0.2598	7	0.318	35.31	-0.403	10.39	1.02	3.687	1.66	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1863|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1722|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4257|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1725|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1727|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4264|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||	-1	0.521818	0.481386	276	141	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			147,.,126	0,.,0	
-all	fam_pl	IP00FNP	chr1:10146:AC:A	2,.,1	7	0.318	22	0.341	DB	1004	0.5742	32.034	0.2598	7	0.318	35.31	-0.403	10.39	1.02	3.687	1.66	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1863|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1722|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4257|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1725|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1727|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4264|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||	-1	0.521818	0.481386	276	141	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			98,.,21	0.938776,.,0.809524	
-all	fam_pl	IP00FNW	chr1:10146:AC:A	0,.,.	7	0.318	22	0.341	DB	1004	0.5742	32.034	0.2598	7	0.318	35.31	-0.403	10.39	1.02	3.687	1.66	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1863|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1722|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4257|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1725|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1727|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4264|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||	-1	0.521818	0.481386	276	141	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			121,.,.	0,.,.	
-all	fam_pl	IP00FNY	chr1:10146:AC:A	0,.,.	7	0.318	22	0.341	DB	1004	0.5742	32.034	0.2598	7	0.318	35.31	-0.403	10.39	1.02	3.687	1.66	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1863|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1722|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4257|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1725|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1727|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4264|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||	-1	0.521818	0.481386	276	141	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			147,.,.	0,.,.	
-all	fam_pl	C0011JY	chr1:10177:A:C	0,.,.	1	0.056	18	1.72	DB	823	3.0103	4.301	-0.1873	3	0.167	32.12	1.68	13.29	1.01	2.833	-11.15	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1833|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1692|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4227|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1695|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1697|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4234|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||	-1	0.155172	0.134146	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			87,.,.	0,.,.	
-all	fam_pl	C0011JZ	chr1:10177:A:C	-1,.,.	1	0.056	18	1.72	DB	823	3.0103	4.301	-0.1873	3	0.167	32.12	1.68	13.29	1.01	2.833	-11.15	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1833|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1692|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4227|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1695|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1697|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4234|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||	-1	0.155172	0.134146	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			69,.,.	0,.,.	
-all	fam_pl	C0011K1	chr1:10177:A:C	0,.,.	1	0.056	18	1.72	DB	823	3.0103	4.301	-0.1873	3	0.167	32.12	1.68	13.29	1.01	2.833	-11.15	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1833|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1692|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4227|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1695|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1697|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4234|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||	-1	0.155172	0.134146	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			91,.,.	0,.,.	
-all	fam_pl	C0011K2	chr1:10177:A:C	0,.,.	1	0.056	18	1.72	DB	823	3.0103	4.301	-0.1873	3	0.167	32.12	1.68	13.29	1.01	2.833	-11.15	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1833|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1692|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4227|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1695|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1697|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4234|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||	-1	0.155172	0.134146	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			77,.,.	0,.,.	
-all	fam_pl	C0011K3	chr1:10177:A:C	1,.,.	1	0.056	18	1.72	DB	823	3.0103	4.301	-0.1873	3	0.167	32.12	1.68	13.29	1.01	2.833	-11.15	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1833|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1692|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4227|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1695|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1697|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4234|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||	-1	0.155172	0.134146	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			15,.,.	0.8,.,.	
-all	fam_pl	C0011K5	chr1:10177:A:C	0,.,.	1	0.056	18	1.72	DB	823	3.0103	4.301	-0.1873	3	0.167	32.12	1.68	13.29	1.01	2.833	-11.15	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1833|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1692|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4227|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1695|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1697|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4234|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||	-1	0.155172	0.134146	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			69,.,.	0,.,.	
-all	fam_pl	C0011KA	chr1:10177:A:C	-1,.,0	1	0.056	18	1.72	DB	823	3.0103	4.301	-0.1873	3	0.167	32.12	1.68	13.29	1.01	2.833	-11.15	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1833|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1692|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4227|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1695|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1697|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4234|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||	-1	0.155172	0.134146	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			80,.,77	0,.,0	
-all	fam_pl	C0011KB	chr1:10177:A:C	0,.,0	1	0.056	18	1.72	DB	823	3.0103	4.301	-0.1873	3	0.167	32.12	1.68	13.29	1.01	2.833	-11.15	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1833|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1692|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4227|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1695|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1697|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4234|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||	-1	0.155172	0.134146	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			90,.,77	0,.,0	
-all	fam_pl	IP00FNP	chr1:10177:A:C	0,.,-1	1	0.056	18	1.72	DB	823	3.0103	4.301	-0.1873	3	0.167	32.12	1.68	13.29	1.01	2.833	-11.15	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1833|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1692|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4227|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1695|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1697|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4234|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||	-1	0.155172	0.134146	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			66,.,69	0,.,0	
-all	fam_pl	IP00FNW	chr1:10177:A:C	0,.,.	1	0.056	18	1.72	DB	823	3.0103	4.301	-0.1873	3	0.167	32.12	1.68	13.29	1.01	2.833	-11.15	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1833|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1692|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4227|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1695|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1697|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4234|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||	-1	0.155172	0.134146	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			81,.,.	0,.,.	
-all	fam_pl	IP00FNY	chr1:10177:A:C	0,.,.	1	0.056	18	1.72	DB	823	3.0103	4.301	-0.1873	3	0.167	32.12	1.68	13.29	1.01	2.833	-11.15	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1833|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1692|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4227|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1695|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1697|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4234|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||	-1	0.155172	0.134146	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			92,.,.	0,.,.	
-all	fam_pl	C0011JY	chr1:10255:A:AAACCCTAACCCT	-1,.,.	2	0.2	10	.		974	0.2482	0	0.2499	3	0.3	27.07	.	25.36	.	1.609	-0.6117	MQ	AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|YES||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1754|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1613|1||HGNC|37102|YES||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4148|-1||HGNC|38034|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1616|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1618|1||HGNC|37102|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4155|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			137,.,.	0,.,.	
-all	fam_pl	C0011JZ	chr1:10255:A:AAACCCTAACCCT	-1,.,.	2	0.2	10	.		974	0.2482	0	0.2499	3	0.3	27.07	.	25.36	.	1.609	-0.6117	MQ	AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|YES||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1754|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1613|1||HGNC|37102|YES||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4148|-1||HGNC|38034|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1616|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1618|1||HGNC|37102|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4155|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			113,.,.	0,.,.	
-all	fam_pl	C0011K1	chr1:10255:A:AAACCCTAACCCT	0,.,.	2	0.2	10	.		974	0.2482	0	0.2499	3	0.3	27.07	.	25.36	.	1.609	-0.6117	MQ	AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|YES||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1754|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1613|1||HGNC|37102|YES||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4148|-1||HGNC|38034|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1616|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1618|1||HGNC|37102|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4155|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			3,.,.	0,.,.	
-all	fam_pl	C0011K2	chr1:10255:A:AAACCCTAACCCT	-1,.,.	2	0.2	10	.		974	0.2482	0	0.2499	3	0.3	27.07	.	25.36	.	1.609	-0.6117	MQ	AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|YES||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1754|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1613|1||HGNC|37102|YES||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4148|-1||HGNC|38034|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1616|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1618|1||HGNC|37102|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4155|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			92,.,.	0,.,.	
-all	fam_pl	C0011K3	chr1:10255:A:AAACCCTAACCCT	-1,.,.	2	0.2	10	.		974	0.2482	0	0.2499	3	0.3	27.07	.	25.36	.	1.609	-0.6117	MQ	AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|YES||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1754|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1613|1||HGNC|37102|YES||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4148|-1||HGNC|38034|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1616|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1618|1||HGNC|37102|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4155|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			117,.,.	0,.,.	
-all	fam_pl	C0011K5	chr1:10255:A:AAACCCTAACCCT	-1,.,.	2	0.2	10	.		974	0.2482	0	0.2499	3	0.3	27.07	.	25.36	.	1.609	-0.6117	MQ	AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|YES||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1754|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1613|1||HGNC|37102|YES||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4148|-1||HGNC|38034|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1616|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1618|1||HGNC|37102|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4155|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			103,.,.	0,.,.	
-all	fam_pl	C0011KA	chr1:10255:A:AAACCCTAACCCT	-1,.,-1	2	0.2	10	.		974	0.2482	0	0.2499	3	0.3	27.07	.	25.36	.	1.609	-0.6117	MQ	AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|YES||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1754|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1613|1||HGNC|37102|YES||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4148|-1||HGNC|38034|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1616|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1618|1||HGNC|37102|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4155|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			102,.,92	0,.,0	
-all	fam_pl	C0011KB	chr1:10255:A:AAACCCTAACCCT	2,.,-1	2	0.2	10	.		974	0.2482	0	0.2499	3	0.3	27.07	.	25.36	.	1.609	-0.6117	MQ	AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|YES||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1754|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1613|1||HGNC|37102|YES||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4148|-1||HGNC|38034|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1616|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1618|1||HGNC|37102|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4155|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			1,.,92	1,.,0	
-all	fam_pl	IP00FNP	chr1:10255:A:AAACCCTAACCCT	0,.,-1	2	0.2	10	.		974	0.2482	0	0.2499	3	0.3	27.07	.	25.36	.	1.609	-0.6117	MQ	AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|YES||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1754|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1613|1||HGNC|37102|YES||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4148|-1||HGNC|38034|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1616|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1618|1||HGNC|37102|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4155|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			111,.,113	0,.,0	
-all	fam_pl	IP00FNW	chr1:10255:A:AAACCCTAACCCT	0,.,.	2	0.2	10	.		974	0.2482	0	0.2499	3	0.3	27.07	.	25.36	.	1.609	-0.6117	MQ	AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|YES||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1754|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1613|1||HGNC|37102|YES||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4148|-1||HGNC|38034|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1616|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1618|1||HGNC|37102|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4155|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			77,.,.	0,.,.	
-all	fam_pl	IP00FNY	chr1:10255:A:AAACCCTAACCCT	0,.,.	2	0.2	10	.		974	0.2482	0	0.2499	3	0.3	27.07	.	25.36	.	1.609	-0.6117	MQ	AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|YES||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1754|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1613|1||HGNC|37102|YES||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4148|-1||HGNC|38034|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1616|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1618|1||HGNC|37102|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4155|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			103,.,.	0,.,.	
-all	fam_pl	C0011JY	chr1:10335:AACCCTAACCCTAACCCT:A	0,.,.	1	0.056	18	0.282		941	3.0103	6.532	-0.0826	2	0.111	36.92	-1.732	4.41	-0.035	0.016	-1.04	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1658|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1517|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4052|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1522|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4059|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			137,.,.	0,.,.	
-all	fam_pl	C0011JZ	chr1:10335:AACCCTAACCCTAACCCT:A	0,.,.	1	0.056	18	0.282		941	3.0103	6.532	-0.0826	2	0.111	36.92	-1.732	4.41	-0.035	0.016	-1.04	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1658|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1517|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4052|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1522|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4059|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			123,.,.	0,.,.	
-all	fam_pl	C0011K1	chr1:10335:AACCCTAACCCTAACCCT:A	0,.,.	1	0.056	18	0.282		941	3.0103	6.532	-0.0826	2	0.111	36.92	-1.732	4.41	-0.035	0.016	-1.04	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1658|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1517|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4052|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1522|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4059|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			128,.,.	0,.,.	
-all	fam_pl	C0011K2	chr1:10335:AACCCTAACCCTAACCCT:A	0,.,.	1	0.056	18	0.282		941	3.0103	6.532	-0.0826	2	0.111	36.92	-1.732	4.41	-0.035	0.016	-1.04	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1658|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1517|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4052|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1522|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4059|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			126,.,.	0,.,.	
-all	fam_pl	C0011K3	chr1:10335:AACCCTAACCCTAACCCT:A	1,.,.	1	0.056	18	0.282		941	3.0103	6.532	-0.0826	2	0.111	36.92	-1.732	4.41	-0.035	0.016	-1.04	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1658|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1517|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4052|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1522|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4059|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			9,.,.	0.222222,.,.	
-all	fam_pl	C0011K5	chr1:10335:AACCCTAACCCTAACCCT:A	0,.,.	1	0.056	18	0.282		941	3.0103	6.532	-0.0826	2	0.111	36.92	-1.732	4.41	-0.035	0.016	-1.04	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1658|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1517|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4052|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1522|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4059|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			120,.,.	0,.,.	
-all	fam_pl	C0011KA	chr1:10335:AACCCTAACCCTAACCCT:A	-1,.,0	1	0.056	18	0.282		941	3.0103	6.532	-0.0826	2	0.111	36.92	-1.732	4.41	-0.035	0.016	-1.04	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1658|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1517|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4052|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1522|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4059|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			2,.,126	0,.,0	
-all	fam_pl	C0011KB	chr1:10335:AACCCTAACCCTAACCCT:A	-1,.,0	1	0.056	18	0.282		941	3.0103	6.532	-0.0826	2	0.111	36.92	-1.732	4.41	-0.035	0.016	-1.04	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1658|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1517|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4052|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1522|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4059|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			0,.,126	0,.,0	
-all	fam_pl	IP00FNP	chr1:10335:AACCCTAACCCTAACCCT:A	0,.,0	1	0.056	18	0.282		941	3.0103	6.532	-0.0826	2	0.111	36.92	-1.732	4.41	-0.035	0.016	-1.04	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1658|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1517|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4052|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1522|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4059|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			5,.,123	0,.,0	
-all	fam_pl	IP00FNW	chr1:10335:AACCCTAACCCTAACCCT:A	0,.,.	1	0.056	18	0.282		941	3.0103	6.532	-0.0826	2	0.111	36.92	-1.732	4.41	-0.035	0.016	-1.04	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1658|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1517|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4052|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1522|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4059|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			120,.,.	0,.,.	
-all	fam_pl	IP00FNY	chr1:10335:AACCCTAACCCTAACCCT:A	0,.,.	1	0.056	18	0.282		941	3.0103	6.532	-0.0826	2	0.111	36.92	-1.732	4.41	-0.035	0.016	-1.04	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1658|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1517|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4052|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1522|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4059|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			153,.,.	0,.,.	
-all	fam_pl	C0011JY	chr1:10337:CCCTAA:C	0,.,.	1	0.056	18	-0.14		1040	3.0103	0	0.3447	1	0.056	37.66	0.967	22.29	-1.593	1.609	-1.779	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1668|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1527|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4062|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1530|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1532|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4069|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			159,.,.	0,.,.	
-all	fam_pl	C0011JZ	chr1:10337:CCCTAA:C	0,.,.	1	0.056	18	-0.14		1040	3.0103	0	0.3447	1	0.056	37.66	0.967	22.29	-1.593	1.609	-1.779	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1668|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1527|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4062|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1530|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1532|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4069|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			140,.,.	0,.,.	
-all	fam_pl	C0011K1	chr1:10337:CCCTAA:C	0,.,.	1	0.056	18	-0.14		1040	3.0103	0	0.3447	1	0.056	37.66	0.967	22.29	-1.593	1.609	-1.779	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1668|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1527|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4062|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1530|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1532|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4069|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			149,.,.	0,.,.	
-all	fam_pl	C0011K2	chr1:10337:CCCTAA:C	0,.,.	1	0.056	18	-0.14		1040	3.0103	0	0.3447	1	0.056	37.66	0.967	22.29	-1.593	1.609	-1.779	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1668|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1527|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4062|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1530|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1532|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4069|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			129,.,.	0,.,.	
-all	fam_pl	C0011K3	chr1:10337:CCCTAA:C	1,.,.	1	0.056	18	-0.14		1040	3.0103	0	0.3447	1	0.056	37.66	0.967	22.29	-1.593	1.609	-1.779	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1668|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1527|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4062|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1530|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1532|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4069|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			7,.,.	0.857143,.,.	
-all	fam_pl	C0011K5	chr1:10337:CCCTAA:C	0,.,.	1	0.056	18	-0.14		1040	3.0103	0	0.3447	1	0.056	37.66	0.967	22.29	-1.593	1.609	-1.779	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1668|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1527|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4062|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1530|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1532|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4069|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			138,.,.	0,.,.	
-all	fam_pl	C0011KA	chr1:10337:CCCTAA:C	-1,.,0	1	0.056	18	-0.14		1040	3.0103	0	0.3447	1	0.056	37.66	0.967	22.29	-1.593	1.609	-1.779	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1668|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1527|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4062|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1530|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1532|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4069|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			2,.,129	0,.,0	
-all	fam_pl	C0011KB	chr1:10337:CCCTAA:C	-1,.,0	1	0.056	18	-0.14		1040	3.0103	0	0.3447	1	0.056	37.66	0.967	22.29	-1.593	1.609	-1.779	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1668|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1527|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4062|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1530|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1532|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4069|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			0,.,129	0,.,0	
-all	fam_pl	IP00FNP	chr1:10337:CCCTAA:C	0,.,0	1	0.056	18	-0.14		1040	3.0103	0	0.3447	1	0.056	37.66	0.967	22.29	-1.593	1.609	-1.779	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1668|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1527|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4062|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1530|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1532|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4069|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			6,.,140	0,.,0	
-all	fam_pl	IP00FNW	chr1:10337:CCCTAA:C	0,.,.	1	0.056	18	-0.14		1040	3.0103	0	0.3447	1	0.056	37.66	0.967	22.29	-1.593	1.609	-1.779	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1668|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1527|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4062|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1530|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1532|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4069|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			135,.,.	0,.,.	
-all	fam_pl	IP00FNY	chr1:10337:CCCTAA:C	0,.,.	1	0.056	18	-0.14		1040	3.0103	0	0.3447	1	0.056	37.66	0.967	22.29	-1.593	1.609	-1.779	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1668|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1527|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4062|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1530|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1532|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4069|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||	-1	0	0	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			157,.,.	0,.,.	
-all	fam_pl	C0011JY	chr1:10354:C:A	0,.,.	1	0.045	22	-0.114		986	3.0103	10.296	-0.2374	2	0.091	32.62	3.07	14.64	1.29	3.604	-16.72	MQ	A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|YES||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1656|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1515|1||HGNC|37102|YES||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4050|-1||HGNC|38034|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1518|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4057|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||	-1	0.0625	0.0695187	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			128,.,.	0,.,.	
-all	fam_pl	C0011JZ	chr1:10354:C:A	0,.,.	1	0.045	22	-0.114		986	3.0103	10.296	-0.2374	2	0.091	32.62	3.07	14.64	1.29	3.604	-16.72	MQ	A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|YES||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1656|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1515|1||HGNC|37102|YES||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4050|-1||HGNC|38034|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1518|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4057|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||	-1	0.0625	0.0695187	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			112,.,.	0,.,.	
-all	fam_pl	C0011K1	chr1:10354:C:A	0,.,.	1	0.045	22	-0.114		986	3.0103	10.296	-0.2374	2	0.091	32.62	3.07	14.64	1.29	3.604	-16.72	MQ	A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|YES||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1656|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1515|1||HGNC|37102|YES||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4050|-1||HGNC|38034|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1518|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4057|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||	-1	0.0625	0.0695187	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			122,.,.	0,.,.	
-all	fam_pl	C0011K2	chr1:10354:C:A	0,.,.	1	0.045	22	-0.114		986	3.0103	10.296	-0.2374	2	0.091	32.62	3.07	14.64	1.29	3.604	-16.72	MQ	A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|YES||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1656|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1515|1||HGNC|37102|YES||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4050|-1||HGNC|38034|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1518|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4057|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||	-1	0.0625	0.0695187	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			116,.,.	0,.,.	
-all	fam_pl	C0011K3	chr1:10354:C:A	1,.,.	1	0.045	22	-0.114		986	3.0103	10.296	-0.2374	2	0.091	32.62	3.07	14.64	1.29	3.604	-16.72	MQ	A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|YES||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1656|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1515|1||HGNC|37102|YES||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4050|-1||HGNC|38034|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1518|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4057|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||	-1	0.0625	0.0695187	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			11,.,.	0.454545,.,.	
-all	fam_pl	C0011K5	chr1:10354:C:A	0,.,.	1	0.045	22	-0.114		986	3.0103	10.296	-0.2374	2	0.091	32.62	3.07	14.64	1.29	3.604	-16.72	MQ	A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|YES||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1656|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1515|1||HGNC|37102|YES||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4050|-1||HGNC|38034|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1518|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4057|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||	-1	0.0625	0.0695187	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			101,.,.	0,.,.	
-all	fam_pl	C0011KA	chr1:10354:C:A	0,.,0	1	0.045	22	-0.114		986	3.0103	10.296	-0.2374	2	0.091	32.62	3.07	14.64	1.29	3.604	-16.72	MQ	A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|YES||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1656|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1515|1||HGNC|37102|YES||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4050|-1||HGNC|38034|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1518|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4057|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||	-1	0.0625	0.0695187	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			2,.,116	0,.,0	
-all	fam_pl	C0011KB	chr1:10354:C:A	0,.,0	1	0.045	22	-0.114		986	3.0103	10.296	-0.2374	2	0.091	32.62	3.07	14.64	1.29	3.604	-16.72	MQ	A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|YES||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1656|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1515|1||HGNC|37102|YES||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4050|-1||HGNC|38034|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1518|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4057|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||	-1	0.0625	0.0695187	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			5,.,116	0,.,0	
-all	fam_pl	IP00FNP	chr1:10354:C:A	0,.,0	1	0.045	22	-0.114		986	3.0103	10.296	-0.2374	2	0.091	32.62	3.07	14.64	1.29	3.604	-16.72	MQ	A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|YES||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1656|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1515|1||HGNC|37102|YES||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4050|-1||HGNC|38034|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1518|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4057|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||	-1	0.0625	0.0695187	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			10,.,112	0,.,0	
-all	fam_pl	IP00FNW	chr1:10354:C:A	0,.,.	1	0.045	22	-0.114		986	3.0103	10.296	-0.2374	2	0.091	32.62	3.07	14.64	1.29	3.604	-16.72	MQ	A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|YES||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1656|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1515|1||HGNC|37102|YES||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4050|-1||HGNC|38034|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1518|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4057|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||	-1	0.0625	0.0695187	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			172,.,.	0,.,.	
-all	fam_pl	IP00FNY	chr1:10354:C:A	0,.,.	1	0.045	22	-0.114		986	3.0103	10.296	-0.2374	2	0.091	32.62	3.07	14.64	1.29	3.604	-16.72	MQ	A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|YES||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1656|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1515|1||HGNC|37102|YES||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4050|-1||HGNC|38034|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1518|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4057|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||	-1	0.0625	0.0695187	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			183,.,.	0,.,.	
-all	fam_pl	C0011JY	chr1:10387:T:C	0,.,.	1	0.045	22	1.17		1037	3.0103	1.983	-0.2945	2	0.091	32.44	0.028	3.54	-1.246	1.609	-7.425	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1623|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1482|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4017|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1485|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1487|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4024|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			133,.,.	0,.,.	
-all	fam_pl	C0011JZ	chr1:10387:T:C	0,.,.	1	0.045	22	1.17		1037	3.0103	1.983	-0.2945	2	0.091	32.44	0.028	3.54	-1.246	1.609	-7.425	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1623|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1482|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4017|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1485|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1487|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4024|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			97,.,.	0,.,.	
-all	fam_pl	C0011K1	chr1:10387:T:C	0,.,.	1	0.045	22	1.17		1037	3.0103	1.983	-0.2945	2	0.091	32.44	0.028	3.54	-1.246	1.609	-7.425	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1623|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1482|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4017|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1485|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1487|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4024|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			124,.,.	0,.,.	
-all	fam_pl	C0011K2	chr1:10387:T:C	0,.,.	1	0.045	22	1.17		1037	3.0103	1.983	-0.2945	2	0.091	32.44	0.028	3.54	-1.246	1.609	-7.425	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1623|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1482|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4017|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1485|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1487|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4024|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			105,.,.	0,.,.	
-all	fam_pl	C0011K3	chr1:10387:T:C	0,.,.	1	0.045	22	1.17		1037	3.0103	1.983	-0.2945	2	0.091	32.44	0.028	3.54	-1.246	1.609	-7.425	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1623|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1482|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4017|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1485|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1487|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4024|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			20,.,.	0,.,.	
-all	fam_pl	C0011K5	chr1:10387:T:C	0,.,.	1	0.045	22	1.17		1037	3.0103	1.983	-0.2945	2	0.091	32.44	0.028	3.54	-1.246	1.609	-7.425	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1623|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1482|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4017|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1485|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1487|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4024|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			96,.,.	0,.,.	
-all	fam_pl	C0011KA	chr1:10387:T:C	0,.,0	1	0.045	22	1.17		1037	3.0103	1.983	-0.2945	2	0.091	32.44	0.028	3.54	-1.246	1.609	-7.425	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1623|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1482|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4017|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1485|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1487|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4024|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			10,.,105	0,.,0	
-all	fam_pl	C0011KB	chr1:10387:T:C	0,.,0	1	0.045	22	1.17		1037	3.0103	1.983	-0.2945	2	0.091	32.44	0.028	3.54	-1.246	1.609	-7.425	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1623|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1482|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4017|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1485|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1487|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4024|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			8,.,105	0,.,0	
-all	fam_pl	IP00FNP	chr1:10387:T:C	1,.,0	1	0.045	22	1.17		1037	3.0103	1.983	-0.2945	2	0.091	32.44	0.028	3.54	-1.246	1.609	-7.425	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1623|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1482|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4017|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1485|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1487|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4024|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			27,.,97	0.259259,.,0	
-all	fam_pl	IP00FNW	chr1:10387:T:C	0,.,.	1	0.045	22	1.17		1037	3.0103	1.983	-0.2945	2	0.091	32.44	0.028	3.54	-1.246	1.609	-7.425	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1623|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1482|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4017|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1485|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1487|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4024|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			186,.,.	0,.,.	
-all	fam_pl	IP00FNY	chr1:10387:T:C	0,.,.	1	0.045	22	1.17		1037	3.0103	1.983	-0.2945	2	0.091	32.44	0.028	3.54	-1.246	1.609	-7.425	MQ	C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1623|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1482|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4017|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1485|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1487|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4024|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||	-1	-1	-1	-1	-1	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			209,.,.	0,.,.	
-all	fam_pl	C0011JY	chr1:10390:CCCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA:C	0,.,.	1	0.045	22	2.09		928	3.0103	3.285	-0.2574	2	0.091	37.08	1.87	15.94	-2.856	1.532	-3.165	ReadPosRankSum	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1577|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1436|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1439|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1441|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3978|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||	-1	0.0653409	0.0840336	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			133,.,.	0,.,.	
-all	fam_pl	C0011JZ	chr1:10390:CCCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA:C	0,.,.	1	0.045	22	2.09		928	3.0103	3.285	-0.2574	2	0.091	37.08	1.87	15.94	-2.856	1.532	-3.165	ReadPosRankSum	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1577|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1436|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1439|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1441|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3978|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||	-1	0.0653409	0.0840336	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			107,.,.	0,.,.	
-all	fam_pl	C0011K1	chr1:10390:CCCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA:C	0,.,.	1	0.045	22	2.09		928	3.0103	3.285	-0.2574	2	0.091	37.08	1.87	15.94	-2.856	1.532	-3.165	ReadPosRankSum	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1577|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1436|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1439|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1441|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3978|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||	-1	0.0653409	0.0840336	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			126,.,.	0,.,.	
-all	fam_pl	C0011K2	chr1:10390:CCCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA:C	0,.,.	1	0.045	22	2.09		928	3.0103	3.285	-0.2574	2	0.091	37.08	1.87	15.94	-2.856	1.532	-3.165	ReadPosRankSum	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1577|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1436|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1439|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1441|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3978|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||	-1	0.0653409	0.0840336	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			105,.,.	0,.,.	
-all	fam_pl	C0011K3	chr1:10390:CCCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA:C	0,.,.	1	0.045	22	2.09		928	3.0103	3.285	-0.2574	2	0.091	37.08	1.87	15.94	-2.856	1.532	-3.165	ReadPosRankSum	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1577|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1436|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1439|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1441|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3978|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||	-1	0.0653409	0.0840336	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			26,.,.	0,.,.	
-all	fam_pl	C0011K5	chr1:10390:CCCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA:C	0,.,.	1	0.045	22	2.09		928	3.0103	3.285	-0.2574	2	0.091	37.08	1.87	15.94	-2.856	1.532	-3.165	ReadPosRankSum	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1577|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1436|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1439|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1441|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3978|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||	-1	0.0653409	0.0840336	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			93,.,.	0,.,.	
-all	fam_pl	C0011KA	chr1:10390:CCCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA:C	0,.,0	1	0.045	22	2.09		928	3.0103	3.285	-0.2574	2	0.091	37.08	1.87	15.94	-2.856	1.532	-3.165	ReadPosRankSum	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1577|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1436|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1439|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1441|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3978|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||	-1	0.0653409	0.0840336	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			11,.,105	0,.,0	
-all	fam_pl	C0011KB	chr1:10390:CCCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA:C	0,.,0	1	0.045	22	2.09		928	3.0103	3.285	-0.2574	2	0.091	37.08	1.87	15.94	-2.856	1.532	-3.165	ReadPosRankSum	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1577|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1436|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1439|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1441|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3978|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||	-1	0.0653409	0.0840336	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			7,.,105	0,.,0	
-all	fam_pl	IP00FNP	chr1:10390:CCCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA:C	0,.,0	1	0.045	22	2.09		928	3.0103	3.285	-0.2574	2	0.091	37.08	1.87	15.94	-2.856	1.532	-3.165	ReadPosRankSum	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1577|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1436|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1439|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1441|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3978|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||	-1	0.0653409	0.0840336	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			28,.,107	0,.,0	
-all	fam_pl	IP00FNW	chr1:10390:CCCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA:C	1,.,.	1	0.045	22	2.09		928	3.0103	3.285	-0.2574	2	0.091	37.08	1.87	15.94	-2.856	1.532	-3.165	ReadPosRankSum	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1577|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1436|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1439|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1441|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3978|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||	-1	0.0653409	0.0840336	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			20,.,.	0.55,.,.	
-all	fam_pl	IP00FNY	chr1:10390:CCCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA:C	0,.,.	1	0.045	22	2.09		928	3.0103	3.285	-0.2574	2	0.091	37.08	1.87	15.94	-2.856	1.532	-3.165	ReadPosRankSum	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1577|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1436|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1439|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1441|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3978|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||	-1	0.0653409	0.0840336	0	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			200,.,.	0,.,.	
-all	fam_pl	C0011JY	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:*	0,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ		-1	-1	-1	-1	-1	2147483646	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			121,.,.	0,.,.	
-all	fam_pl	C0011JZ	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:*	0,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ		-1	-1	-1	-1	-1	2147483646	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			85,.,.	0,.,.	
-all	fam_pl	C0011K1	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:*	0,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ		-1	-1	-1	-1	-1	2147483646	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			121,.,.	0,.,.	
-all	fam_pl	C0011K2	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:*	0,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ		-1	-1	-1	-1	-1	2147483646	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			99,.,.	0,.,.	
-all	fam_pl	C0011K3	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:*	0,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ		-1	-1	-1	-1	-1	2147483646	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			22,.,.	0,.,.	
-all	fam_pl	C0011K5	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:*	0,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ		-1	-1	-1	-1	-1	2147483646	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			95,.,.	0,.,.	
-all	fam_pl	C0011KA	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:*	0,.,0	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ		-1	-1	-1	-1	-1	2147483646	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			18,.,99	0,.,0	
-all	fam_pl	C0011KB	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:*	0,.,0	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ		-1	-1	-1	-1	-1	2147483646	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			15,.,99	0,.,0	
-all	fam_pl	IP00FNP	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:*	0,.,0	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ		-1	-1	-1	-1	-1	2147483646	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			28,.,85	0,.,0	
-all	fam_pl	IP00FNW	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:*	1,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ		-1	-1	-1	-1	-1	2147483646	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			20,.,.	0.55,.,.	
-all	fam_pl	IP00FNY	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:*	0,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ		-1	-1	-1	-1	-1	2147483646	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			185,.,.	0,.,.	
-all	fam_pl	C0011JY	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:A	0,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1570|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1429|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3964|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1432|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1434|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||	-1	0.239586	0.259883	2	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			121,.,.	0,.,.	
-all	fam_pl	C0011JZ	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:A	0,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1570|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1429|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3964|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1432|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1434|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||	-1	0.239586	0.259883	2	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			85,.,.	0,.,.	
-all	fam_pl	C0011K1	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:A	0,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1570|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1429|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3964|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1432|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1434|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||	-1	0.239586	0.259883	2	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			121,.,.	0,.,.	
-all	fam_pl	C0011K2	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:A	0,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1570|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1429|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3964|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1432|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1434|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||	-1	0.239586	0.259883	2	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			99,.,.	0,.,.	
-all	fam_pl	C0011K3	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:A	1,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1570|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1429|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3964|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1432|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1434|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||	-1	0.239586	0.259883	2	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			25,.,.	0.12,.,.	
-all	fam_pl	C0011K5	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:A	0,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1570|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1429|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3964|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1432|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1434|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||	-1	0.239586	0.259883	2	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			95,.,.	0,.,.	
-all	fam_pl	C0011KA	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:A	0,.,0	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1570|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1429|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3964|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1432|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1434|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||	-1	0.239586	0.259883	2	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			18,.,99	0,.,0	
-all	fam_pl	C0011KB	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:A	0,.,0	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1570|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1429|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3964|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1432|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1434|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||	-1	0.239586	0.259883	2	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			15,.,99	0,.,0	
-all	fam_pl	IP00FNP	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:A	0,.,0	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1570|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1429|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3964|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1432|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1434|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||	-1	0.239586	0.259883	2	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			28,.,85	0,.,0	
-all	fam_pl	IP00FNW	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:A	0,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1570|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1429|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3964|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1432|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1434|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||	-1	0.239586	0.259883	2	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			9,.,.	0,.,.	
-all	fam_pl	IP00FNY	chr1:10403:ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC:A	0,.,.	1	0.045	22	0.961		861	3.2222	5.418	-0.1288	1	0.045	41.48	-1.054	1.51	-0.352	1.739	-1.977	MQ	-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1570|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1429|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3964|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1432|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1434|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||	-1	0.239586	0.259883	2	0	51	C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY			185,.,.	0,.,.	
diff --git a/example of results/PL_family_WGS_slivar_1664357562/res.vcf b/example of results/PL_family_WGS_slivar_1664357562/res.vcf
deleted file mode 100644
index 636331902d1c97059a24e79c900fe04af50c07d1..0000000000000000000000000000000000000000
--- a/example of results/PL_family_WGS_slivar_1664357562/res.vcf	
+++ /dev/null
@@ -1,171 +0,0 @@
-##fileformat=VCFv4.2
-##FILTER=<ID=PASS,Description="All filters passed">
-##ALT=<ID=NON_REF,Description="Represents any possible alternative allele at this location">
-##FILTER=<ID=LowQual,Description="Low quality">
-##FILTER=<ID=VQSRTrancheINDEL99.00to99.90,Description="Truth sensitivity tranche level for INDEL model at VQS Lod: -4.5351 <= x < -0.4741">
-##FILTER=<ID=VQSRTrancheINDEL99.90to100.00+,Description="Truth sensitivity tranche level for INDEL model at VQS Lod < -20794.8907">
-##FILTER=<ID=VQSRTrancheINDEL99.90to100.00,Description="Truth sensitivity tranche level for INDEL model at VQS Lod: -20794.8907 <= x < -4.5351">
-##FILTER=<ID=VQSRTrancheSNP99.90to100.00+,Description="Truth sensitivity tranche level for SNP model at VQS Lod < -39178.8364">
-##FILTER=<ID=VQSRTrancheSNP99.90to100.00,Description="Truth sensitivity tranche level for SNP model at VQS Lod: -39178.8364 <= x < -2.9039">
-##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
-##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
-##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
-##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block">
-##FORMAT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another">
-##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
-##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
-##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phasing set (typically the position of the first variant in the set)">
-##FORMAT=<ID=RGQ,Number=1,Type=Integer,Description="Unconditional reference genotype confidence, encoded as a phred quality -10*log10 p(genotype call is wrong)">
-##FORMAT=<ID=SB,Number=4,Type=Integer,Description="Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias.">
-##GATKCommandLine.SelectVariants=<ID=SelectVariants,Version=3.7-0-gcfedb67,Date="Tue Aug 04 18:41:02 CEST 2020",Epoch=1596559262546,CommandLineOptions="analysis_type=SelectVariants input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=[/ccc/work/cont007/fg/fg/biobank/by-soft/varscope/hs37d5/WG_hs37d5_regions.target_split_bed/01.bed] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/dev/shm/hs37d5_all_chr.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=/ccc/scratch/cont007/fg0058/fg0058/projet_AUTISMEWG_592/ANALYSE/ANALYSE_A592_C0011JY_H72NKCCX2_1_hs37d5/VARIANT_C0011JY/C0011JY_hs37d5_BOTH_01.HC.temp.g.vcf) discordance=(RodBinding name= source=UNBOUND) concordance=(RodBinding name= source=UNBOUND) out=/ccc/scratch/cont007/fg0058/fg0058/projet_AUTISMEWG_592/ANALYSE/ANALYSE_A592_C0011JY_H72NKCCX2_1_hs37d5/VARIANT_C0011JY/C0011JY_hs37d5_BOTH_01.HC.g.vcf sample_name=[] sample_expressions=null sample_file=null exclude_sample_name=[] exclude_sample_file=[] exclude_sample_expressions=[] selectexpressions=[] invertselect=false excludeNonVariants=false excludeFiltered=false preserveAlleles=false removeUnusedAlternates=false restrictAllelesTo=ALL keepOriginalAC=false keepOriginalDP=false mendelianViolation=false invertMendelianViolation=false mendelianViolationQualThreshold=0.0 select_random_fraction=0.0 remove_fraction_genotypes=0.0 selectTypeToInclude=[] selectTypeToExclude=[] keepIDs=null excludeIDs=null fullyDecode=false justRead=false maxIndelSize=2147483647 minIndelSize=0 maxFilteredGenotypes=2147483647 minFilteredGenotypes=0 maxFractionFilteredGenotypes=1.0 minFractionFilteredGenotypes=0.0 maxNOCALLnumber=2147483647 maxNOCALLfraction=1.0 setFilteredGtToNocall=false ALLOW_NONOVERLAPPING_COMMAND_LINE_SAMPLES=false forceValidOutput=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
-##GATKCommandLine=<ID=ApplyVQSR,CommandLine="ApplyVQSR --recal-file /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-indel-vqsr.recal --tranches-file /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-indel-vqsr.tranches --output /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-vqsr.vcf.gz --truth-sensitivity-filter-level 99.0 --mode INDEL --variant /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-snp-vqsr.vcf.gz --reference references/GRCh37/chr/hs37d5.fa --use-allele-specific-annotations false --ignore-all-filters false --exclude-filtered false --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays  --disable-tool-default-read-filters false",Version="4.1.8.1",Date="September 16, 2021 12:50:15 PM CEST">
-##GATKCommandLine=<ID=ApplyVQSR,CommandLine="ApplyVQSR --recal-file /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-snp-vqsr.recal --tranches-file /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-snp-vqsr.tranches --output /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-snp-vqsr.vcf.gz --truth-sensitivity-filter-level 99.5 --mode SNP --variant /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-no-vqsr.vcf.gz --reference references/GRCh37/chr/hs37d5.fa --use-allele-specific-annotations false --ignore-all-filters false --exclude-filtered false --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays  --disable-tool-default-read-filters false",Version="4.1.8.1",Date="September 16, 2021 12:31:29 PM CEST">
-##GATKCommandLine=<ID=GenomicsDBImport,CommandLine="GenomicsDBImport --genomicsdb-workspace-path /local/scratch/tmp/38734053_1//Dyslexia.chr1.1-1000000 --overwrite-existing-genomicsdb-workspace true --batch-size 50 --consolidate true --sample-name-map /local/scratch/tmp/38734053_1/sample.map --reader-threads 1 --intervals chr1:1-1000000 --interval-padding 500 --tmp-dir /local/scratch/tmp/38734053_1//tmp/ --genomicsdb-segment-size 1048576 --genomicsdb-vcf-buffer-size 16384 --validate-sample-name-map false --merge-input-intervals false --max-num-intervals-to-import-in-parallel 1 --genomicsdb-shared-posixfs-optimizations false --interval-set-rule UNION --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 0 --cloud-index-prefetch-buffer 0 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays  --disable-tool-default-read-filters false",Version="4.1.8.1",Date="September 15, 2021 3:11:49 PM CEST">
-##GATKCommandLine=<ID=GenotypeGVCFs,CommandLine="GenotypeGVCFs --output /local/scratch/tmp/38743216_1/Dyslexia.chr1.1-1000000.genotyped.vcf.gz --only-output-calls-starting-in-intervals true --dbsnp /pasteur/zeus/projets/p02/ghfc_wgs_zeus/tools/ngs-workflow/references/GRCh37/chr/gatk-bundle/dbsnp_138.hg19.vcf.gz --variant gendb:///local/scratch/tmp/38743216_1//Dyslexia.chr1.1-1000000 --intervals chr1:1-1000000 --reference references/GRCh37/chr/hs37d5.fa --annotation-group StandardAnnotation --include-non-variant-sites false --merge-input-intervals false --input-is-somatic false --tumor-lod-to-emit 3.5 --allele-fraction-error 0.001 --keep-combined-raw-annotations false --annotate-with-num-discovered-alleles false --heterozygosity 0.001 --indel-heterozygosity 1.25E-4 --heterozygosity-stdev 0.01 --standard-min-confidence-threshold-for-calling 30.0 --max-alternate-alleles 6 --max-genotype-count 1024 --sample-ploidy 2 --num-reference-samples-if-no-call 0 --genomicsdb-use-bcf-codec false --genomicsdb-shared-posixfs-optimizations false --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays  --disable-tool-default-read-filters false --disable-tool-default-annotations false --enable-all-annotations false --allow-old-rms-mapping-quality-annotation-data false",Version="4.1.8.1",Date="September 15, 2021 3:30:43 PM CEST">
-##GATKCommandLine=<ID=HaplotypeCaller,CommandLine="HaplotypeCaller  --emit-ref-confidence GVCF --standard-min-confidence-threshold-for-calling 10.0 --output /ccc/scratch/cont007/fg0058/fg0058/projet_AUTISMEWG_592/ANALYSE/ANALYSE_A592_C0011JY_H72NKCCX2_1_hs37d5/VARIANT_C0011JY/C0011JY_hs37d5_BOTH_01.HC.temp.g.vcf --intervals /ccc/work/cont007/fg/fg/biobank/by-soft/varscope/hs37d5/WG_hs37d5_regions.target_split_bed/01_overlap.bed --input /ccc/scratch/cont007/fg0058/fg0058/projet_AUTISMEWG_592/ANALYSE/ANALYSE_A592_C0011JY_H72NKCCX2_1_hs37d5/MAPPING_C0011JY/reliable.realign.recal/A592_DA_C0011JY_H72NKCCX2_hs37d5_MERGE_PE_1_01.reliable.realign.recal.bam --reference /dev/shm/hs37d5_all_chr.fasta  --gvcf-gq-bands 1 --gvcf-gq-bands 2 --gvcf-gq-bands 3 --gvcf-gq-bands 4 --gvcf-gq-bands 5 --gvcf-gq-bands 6 --gvcf-gq-bands 7 --gvcf-gq-bands 8 --gvcf-gq-bands 9 --gvcf-gq-bands 10 --gvcf-gq-bands 11 --gvcf-gq-bands 12 --gvcf-gq-bands 13 --gvcf-gq-bands 14 --gvcf-gq-bands 15 --gvcf-gq-bands 16 --gvcf-gq-bands 17 --gvcf-gq-bands 18 --gvcf-gq-bands 19 --gvcf-gq-bands 20 --gvcf-gq-bands 21 --gvcf-gq-bands 22 --gvcf-gq-bands 23 --gvcf-gq-bands 24 --gvcf-gq-bands 25 --gvcf-gq-bands 26 --gvcf-gq-bands 27 --gvcf-gq-bands 28 --gvcf-gq-bands 29 --gvcf-gq-bands 30 --gvcf-gq-bands 31 --gvcf-gq-bands 32 --gvcf-gq-bands 33 --gvcf-gq-bands 34 --gvcf-gq-bands 35 --gvcf-gq-bands 36 --gvcf-gq-bands 37 --gvcf-gq-bands 38 --gvcf-gq-bands 39 --gvcf-gq-bands 40 --gvcf-gq-bands 41 --gvcf-gq-bands 42 --gvcf-gq-bands 43 --gvcf-gq-bands 44 --gvcf-gq-bands 45 --gvcf-gq-bands 46 --gvcf-gq-bands 47 --gvcf-gq-bands 48 --gvcf-gq-bands 49 --gvcf-gq-bands 50 --gvcf-gq-bands 51 --gvcf-gq-bands 52 --gvcf-gq-bands 53 --gvcf-gq-bands 54 --gvcf-gq-bands 55 --gvcf-gq-bands 56 --gvcf-gq-bands 57 --gvcf-gq-bands 58 --gvcf-gq-bands 59 --gvcf-gq-bands 60 --gvcf-gq-bands 70 --gvcf-gq-bands 80 --gvcf-gq-bands 90 --gvcf-gq-bands 99 --indel-size-to-eliminate-in-ref-model 10 --use-alleles-trigger false --disable-optimizations false --just-determine-active-regions false --dont-genotype false --max-mnp-distance 0 --dont-trim-active-regions false --max-disc-ar-extension 25 --max-gga-ar-extension 300 --padding-around-indels 150 --padding-around-snps 20 --adaptive-pruning false --do-not-recover-dangling-branches false --recover-dangling-heads false --consensus false --kmer-size 10 --kmer-size 25 --dont-increase-kmer-sizes-for-cycles false --allow-non-unique-kmers-in-ref false --num-pruning-samples 1 --min-dangling-branch-length 4 --max-num-haplotypes-in-population 128 --min-pruning 2 --adaptive-pruning-initial-error-rate 0.001 --pruning-lod-threshold 1.0 --max-unpruned-variants 100 --debug-graph-transformations false --kmer-length-for-read-error-correction 25 --min-observations-for-kmer-to-be-solid 20 --likelihood-calculation-engine PairHMM --base-quality-score-threshold 18 --pair-hmm-gap-continuation-penalty 10 --pair-hmm-implementation FASTEST_AVAILABLE --pcr-indel-model CONSERVATIVE --phred-scaled-global-read-mismapping-rate 45 --native-pair-hmm-threads 4 --native-pair-hmm-use-double-precision false --debug false --use-filtered-reads-for-annotations false --bam-writer-type CALLED_HAPLOTYPES --dont-use-soft-clipped-bases false --capture-assembly-failure-bam false --error-correct-reads false --do-not-run-physical-phasing false --min-base-quality-score 10 --smith-waterman JAVA --correct-overlapping-quality false --use-new-qual-calculator true --use-old-qual-calculator false --annotate-with-num-discovered-alleles false --heterozygosity 0.001 --indel-heterozygosity 1.25E-4 --heterozygosity-stdev 0.01 --max-alternate-alleles 6 --max-genotype-count 1024 --sample-ploidy 2 --num-reference-samples-if-no-call 0 --genotyping-mode DISCOVERY --genotype-filtered-alleles false --contamination-fraction-to-filter 0.0 --output-mode EMIT_VARIANTS_ONLY --all-site-pls false --min-assembly-region-size 50 --max-assembly-region-size 300 --assembly-region-padding 100 --max-reads-per-alignment-start 50 --active-probability-threshold 0.002 --max-prob-propagation-distance 50 --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays  --disable-tool-default-read-filters false --minimum-mapping-quality 20 --disable-tool-default-annotations false --enable-all-annotations false",Version=4.1.0.0,Date="August 4, 2020 4:14:40 PM CEST">
-##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
-##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
-##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
-##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
-##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
-##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
-##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
-##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
-##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
-##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
-##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
-##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
-##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
-##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
-##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
-##INFO=<ID=NEGATIVE_TRAIN_SITE,Number=0,Type=Flag,Description="This variant was used to build the negative training set of bad variants">
-##INFO=<ID=POSITIVE_TRAIN_SITE,Number=0,Type=Flag,Description="This variant was used to build the positive training set of good variants">
-##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
-##INFO=<ID=RAW_MQandDP,Number=2,Type=Integer,Description="Raw data (sum of squared MQ and total depth) for improved RMS Mapping Quality calculation. Incompatible with deprecated RAW_MQ formulation.">
-##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
-##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
-##INFO=<ID=VQSLOD,Number=1,Type=Float,Description="Log odds of being a true variant versus being false under the trained gaussian mixture model">
-##INFO=<ID=culprit,Number=1,Type=String,Description="The annotation which was the worst performing in the Gaussian mixture model, likely the reason why the variant was filtered out">
-##bcftools_normCommand=norm -m - -w 10000 -f references/GRCh37/chr/hs37d5.fa; Date=Wed Sep 15 15:31:06 2021
-##bcftools_normVersion=1.12+htslib-1.12
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-##contig=<ID=hs37d5,length=35477943>
-##reference=file:///dev/shm/hs37d5_all_chr.fasta
-##source=ApplyVQSR
-##source=GenomicsDBImport
-##source=GenotypeGVCFs
-##source=HaplotypeCaller
-##source=SelectVariants
-##bcftools_normCommand=norm -m - -w 1000 -c s -f references/GRCh37/chr/hs37d5.fa --threads 3 -Oz -o /pasteur/zeus/projets/p02/ghfc_wgs_zeus/WGS/Dyslexia/vcf/splitted/Dyslexia.gatk-vqsr.splitted.chr1.1-10000000.norm.vcf.gz; Date=Thu Sep 16 12:54:23 2021
-##VEP="v104" time="2021-09-16 12:54:40" cache="tools/ensembl-vep-104.3/data/homo_sapiens/104_GRCh37" ensembl-variation=104.20f5335 ensembl-funcgen=104.f1c7762 ensembl=104.1af1dce ensembl-io=104.1d3bb6e 1000genomes="phase3" COSMIC="92" ClinVar="202012" HGMD-PUBLIC="20204" assembly="GRCh37.p13" dbSNP="154" gencode="GENCODE 19" genebuild="2011-04" gnomAD="r2.1" polyphen="2.2.2" regbuild="1.0" sift="sift5.2.2"
-##INFO=<ID=CSQ,Number=.,Type=String,Description="Consequence annotations from Ensembl VEP. Format: Allele|Consequence|IMPACT|SYMBOL|Gene|Feature_type|Feature|BIOTYPE|EXON|INTRON|HGVSc|HGVSp|cDNA_position|CDS_position|Protein_position|Amino_acids|Codons|Existing_variation|DISTANCE|STRAND|FLAGS|SYMBOL_SOURCE|HGNC_ID|CANONICAL|CCDS|SIFT|PolyPhen|HGVS_OFFSET">
-##INFO=<ID=cadd_phred,Number=1,Type=Float,Description="field from from gnotate VCF">
-##INFO=<ID=cadd_phred_filter,Number=0,Type=Flag,Description="non-passing flag in gnotate source VCF">
-##INFO=<ID=gno_non_neuro_af_all,Number=1,Type=Float,Description="field from from gnotate VCF">
-##INFO=<ID=gno_non_neuro_af_all_filter,Number=0,Type=Flag,Description="non-passing flag in gnotate source VCF">
-##INFO=<ID=gno_non_neuro_af_nfe,Number=1,Type=Float,Description="field from from gnotate VCF">
-##INFO=<ID=gno_non_neuro_af_nfe_filter,Number=0,Type=Flag,Description="non-passing flag in gnotate source VCF">
-##INFO=<ID=gno_non_neuro_nhomalt_all,Number=1,Type=Float,Description="field from from gnotate VCF">
-##INFO=<ID=gno_non_neuro_nhomalt_all_filter,Number=0,Type=Flag,Description="non-passing flag in gnotate source VCF">
-##INFO=<ID=gno_non_neuro_nhomalt_nfe,Number=1,Type=Float,Description="field from from gnotate VCF">
-##INFO=<ID=gno_non_neuro_nhomalt_nfe_filter,Number=0,Type=Flag,Description="non-passing flag in gnotate source VCF">
-##INFO=<ID=all,Number=.,Type=String,Description="added by slivar with expression: 'sample.DP >= 0' from Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf">
-##INFO=<ID=impactful,Number=0,Type=Flag,Description="variant is impactful according to slivar and impacts added by VEP/snpEff/bcftools (https://github.com/brentp/slivar/wiki/impactful)">
-##INFO=<ID=genic,Number=0,Type=Flag,Description="variant is genic according to slivar and impacts added by VEP/snpEff/bcftools (https://github.com/brentp/slivar/wiki/impactful)">
-##INFO=<ID=highest_impact_order,Number=1,Type=Integer,Description="impact order (lower is higher) of this variant across all genes and transcripts it overlaps. this integer can be used as a look into the order list to get the actual impact">
-#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	C0011JY	C0011JZ	C0011K1	C0011K2	C0011K3	C0011K5	C0011KA	C0011KB	IP00FNP	IP00FNW	IP00FNY
-chr1	10146	rs375931351	AC	A	1724.92	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.341;DB;DP=1004;ExcessHet=0.5742;FS=32.034;InbreedingCoeff=0.2598;MLEAC=7;MLEAF=0.318;MQ=35.31;MQRankSum=-0.403;QD=10.39;ReadPosRankSum=1.02;SOR=3.687;VQSLOD=1.66;culprit=MQ;CSQ=-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1863|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1722|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4257|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1725|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1727|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4264|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4216|-1||HGNC|38034|||||;cadd_phred=-1;gno_non_neuro_af_all=0.521818;gno_non_neuro_af_nfe=0.481386;gno_non_neuro_nhomalt_all=276;gno_non_neuro_nhomalt_nfe=141;highest_impact_order=51;all=C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:143,0:143:99:.:.:0,120,1800:.	0/1:4,17:21:64:.:.:294,0,64:.	1/1:2,11:13:12:.:.:232,12,0:.	0/0:126,0:126:72:.:.:0,72,2864:.	0|1:7,15:22:99:0|1:10146_AC_A:318,0,158:10146	0/1:4,8:12:48:.:.:92,0,48:.	0/0:105,0:105:0:.:.:0,0,1112:.	0/0:147,0:147:9:.:.:0,9,2908:.	1/1:6,92:98:56:.:.:814,56,0:.	0/0:121,0:121:99:.:.:0,120,1800:.	0/0:147,0:147:99:.:.:0,120,1800:.
-chr1	10177	rs201752861	A	C	199.3	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.056;AN=18;BaseQRankSum=1.72;DB;DP=823;ExcessHet=3.0103;FS=4.301;InbreedingCoeff=-0.1873;MLEAC=3;MLEAF=0.167;MQ=32.12;MQRankSum=1.68;QD=13.29;ReadPosRankSum=1.01;SOR=2.833;VQSLOD=-11.15;culprit=MQ;CSQ=C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1833|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1692|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4227|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1695|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1697|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4234|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4186|-1||HGNC|38034|||||;cadd_phred=-1;gno_non_neuro_af_all=0.155172;gno_non_neuro_af_nfe=0.134146;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_nfe=0;highest_impact_order=51;all=C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:87,0:87:0:.:.:0,0,433:.	./.:69,0:69:.:.:.:0,0,0:.	0/0:91,0:91:0:.:.:0,0,256:.	0/0:77,0:77:0:.:.:0,0,37:.	0|1:3,12:15:99:0|1:10146_AC_A:200,0,103:10146	0/0:69,0:69:0:.:.:0,0,295:.	./.:80,0:80:.:.:.:0,0,0:.	0/0:90,0:90:0:.:.:0,0,102:.	0/0:66,0:66:0:.:.:0,0,731:.	0/0:81,0:81:0:.:.:0,0,1688:.	0/0:92,0:92:0:.:.:0,0,1127:.
-chr1	10255	.	A	AAACCCTAACCCT	41.43	VQSRTrancheINDEL99.00to99.90	AC=2;AF=0.2;AN=10;DP=974;ExcessHet=0.2482;FS=0;InbreedingCoeff=0.2499;MLEAC=3;MLEAF=0.3;MQ=27.07;QD=25.36;SOR=1.609;VQSLOD=-0.6117;culprit=MQ;CSQ=AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|YES||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1754|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1613|1||HGNC|37102|YES||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4148|-1||HGNC|38034|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1616|1||HGNC|37102|||||,AACCCTAACCCT|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1618|1||HGNC|37102|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4155|-1||HGNC|38034|||||,AACCCTAACCCT|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4107|-1||HGNC|38034|||||;cadd_phred=-1;gno_non_neuro_af_all=0;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=51;all=C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	./.:137,0:137:.:0,0,0	./.:113,0:113:.:0,0,0	0/0:3,0:3:6:0,6,90	./.:92,0:92:.:0,0,0	./.:117,0:117:.:0,0,0	./.:103,0:103:.:0,0,0	./.:102,0:102:.:0,0,0	1/1:0,1:1:3:45,3,0	0/0:111,0:111:0:0,0,817	0/0:77,0:77:0:0,0,326	0/0:103,0:103:0:0,0,951
-chr1	10335	.	AACCCTAACCCTAACCCT	A	39.68	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.056;AN=18;BaseQRankSum=0.282;DP=941;ExcessHet=3.0103;FS=6.532;InbreedingCoeff=-0.0826;MLEAC=2;MLEAF=0.111;MQ=36.92;MQRankSum=-1.732;NEGATIVE_TRAIN_SITE;QD=4.41;ReadPosRankSum=-0.035;SOR=0.016;VQSLOD=-1.04;culprit=MQ;CSQ=-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1658|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1517|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4052|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1522|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4059|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4011|-1||HGNC|38034|||||;cadd_phred=-1;gno_non_neuro_af_all=-1;gno_non_neuro_af_nfe=-1;gno_non_neuro_nhomalt_all=-1;gno_non_neuro_nhomalt_nfe=-1;highest_impact_order=51;all=C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:137,0:137:0:0,0,724	0/0:123,0:123:0:0,0,1204	0/0:128,0:128:0:0,0,162	0/0:126,0:126:0:0,0,1099	0/1:7,2:9:44:44,0,252	0/0:120,0:120:0:0,0,490	./.:2,0:2:.:0,0,0	./.:0,0:0:.:0,0,0	0/0:5,0:5:9:0,9,135	0/0:120,0:120:0:0,0,1141	0/0:153,0:153:99:0,120,1800
-chr1	10337	.	CCCTAA	C	156.01	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.056;AN=18;BaseQRankSum=-0.14;DP=1040;ExcessHet=3.0103;FS=0;InbreedingCoeff=0.3447;MLEAC=1;MLEAF=0.056;MQ=37.66;MQRankSum=0.967;NEGATIVE_TRAIN_SITE;QD=22.29;ReadPosRankSum=-1.593;SOR=1.609;VQSLOD=-1.779;culprit=MQ;CSQ=-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1668|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1527|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4062|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1530|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1532|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4069|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4021|-1||HGNC|38034|||||;cadd_phred=-1;gno_non_neuro_af_all=0;gno_non_neuro_af_nfe=0;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_nfe=0;highest_impact_order=51;all=C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:159,0:159:99:0,120,1800	0/0:140,0:140:98:0,98,3458	0/0:149,0:149:87:0,87,3684	0/0:129,0:129:99:0,116,1800	0/1:1,6:9:86:212,0,86	0/0:138,0:138:99:0,120,1800	./.:2,0:2:.:0,0,0	./.:0,0:0:.:0,0,0	0/0:6,0:6:12:0,12,180	0/0:135,0:135:99:0,120,1800	0/0:157,0:157:99:0,120,1800
-chr1	10354	.	C	A	161.08	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.045;AN=22;BaseQRankSum=-0.114;DP=986;ExcessHet=3.0103;FS=10.296;InbreedingCoeff=-0.2374;MLEAC=2;MLEAF=0.091;MQ=32.62;MQRankSum=3.07;QD=14.64;ReadPosRankSum=1.29;SOR=3.604;VQSLOD=-16.72;culprit=MQ;CSQ=A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|YES||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1656|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1515|1||HGNC|37102|YES||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4050|-1||HGNC|38034|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1518|1||HGNC|37102|||||,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1520|1||HGNC|37102|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4057|-1||HGNC|38034|||||,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||4009|-1||HGNC|38034|||||;cadd_phred=-1;gno_non_neuro_af_all=0.0625;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.0695187;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=51;all=C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:128,0:128:0:.:.:0,0,398:.	0/0:112,0:112:0:.:.:0,0,867:.	0/0:122,0:122:0:.:.:0,0,155:.	0/0:116,0:116:0:.:.:0,0,1020:.	0/1:6,5:11:99:.:.:168,0,162:.	0/0:101,0:101:0:.:.:0,0,655:.	0/0:2,0:2:6:.:.:0,6,59:.	0|0:5,0:5:18:0|1:10297_C_T:0,18,260:10297	0/0:10,0:10:24:.:.:0,24,360:.	0/0:172,0:172:44:.:.:0,44,4150:.	0/0:183,0:183:0:.:.:0,0,946:.
-chr1	10387	.	T	C	95.49	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.045;AN=22;BaseQRankSum=1.17;DP=1037;ExcessHet=3.0103;FS=1.983;InbreedingCoeff=-0.2945;MLEAC=2;MLEAF=0.091;MQ=32.44;MQRankSum=0.028;QD=3.54;ReadPosRankSum=-1.246;SOR=1.609;VQSLOD=-7.425;culprit=MQ;CSQ=C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|YES||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1623|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1482|1||HGNC|37102|YES||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||4017|-1||HGNC|38034|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1485|1||HGNC|37102|||||,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1487|1||HGNC|37102|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||4024|-1||HGNC|38034|||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3976|-1||HGNC|38034|||||;cadd_phred=-1;gno_non_neuro_af_all=-1;gno_non_neuro_af_nfe=-1;gno_non_neuro_nhomalt_all=-1;gno_non_neuro_nhomalt_nfe=-1;highest_impact_order=51;all=C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:133,0:133:0:0,0,2958	0/0:97,0:97:0:0,0,1738	0/0:124,0:124:0:0,0,2139	0/0:105,0:105:0:0,0,1714	0/0:20,0:20:0:0,0,516	0/0:96,0:96:0:0,0,1327	0/0:10,0:10:30:0,30,277	0/0:8,0:8:24:0,24,218	0/1:20,7:27:99:100,0,472	0/0:186,0:186:0:0,0,2777	0/0:209,0:209:0:0,0,2587
-chr1	10390	.	CCCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA	C	318.84	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.045;AN=22;BaseQRankSum=2.09;DP=928;ExcessHet=3.0103;FS=3.285;InbreedingCoeff=-0.2574;MLEAC=2;MLEAF=0.091;MQ=37.08;MQRankSum=1.87;NEGATIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=-2.856;SOR=1.532;VQSLOD=-3.165;culprit=ReadPosRankSum;CSQ=-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1577|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1436|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1439|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1441|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3978|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3930|-1||HGNC|38034|||||;cadd_phred=-1;gno_non_neuro_af_all=0.0653409;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.0840336;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=51;all=C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:133,0:133:0:.:.:0,0,2953:.	0/0:107,0:107:0:.:.:0,0,2104:.	0/0:126,0:126:0:.:.:0,0,1984:.	0/0:105,0:105:0:.:.:0,0,1714:.	0/0:26,0:26:82:.:.:0,82,1200:.	0/0:93,0:93:0:.:.:0,0,1565:.	0/0:11,0:11:0:.:.:0,0,283:.	0|0:7,0:7:25:0|1:10297_C_T:0,25,351:10297	0/0:28,0:28:81:.:.:0,81,1215:.	0/1:9,11:20:99:.:.:325,0,309:.	0/0:200,0:200:0:.:.:0,0,4329:.
-chr1	10403	.	ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC	*	67.82	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.045;AN=22;BaseQRankSum=0.961;DP=861;ExcessHet=3.2222;FS=5.418;InbreedingCoeff=-0.1288;MLEAC=1;MLEAF=0.045;MQ=41.48;MQRankSum=-1.054;NEGATIVE_TRAIN_SITE;QD=1.51;ReadPosRankSum=-0.352;SOR=1.739;VQSLOD=-1.977;culprit=MQ;cadd_phred=-1;gno_non_neuro_af_all=-1;gno_non_neuro_af_nfe=-1;gno_non_neuro_nhomalt_all=-1;gno_non_neuro_nhomalt_nfe=-1;highest_impact_order=2147483646;all=C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:121,0:121:99:0,120,1800	0/0:85,0:85:0:0,0,1394	0/0:121,0:121:20:0,20,3067	0/0:99,0:99:99:0,117,1800	0/0:22,0:25:79:79,124,1098	0/0:95,0:95:85:0,85,2510	0/0:18,0:18:48:0,48,720	0/0:15,0:15:39:0,39,585	0/0:28,0:28:48:0,48,720	0/1:9,11:20:99:325,0,309	0/0:185,0:185:99:0,120,1800
-chr1	10403	.	ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC	A	67.82	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.045;AN=22;BaseQRankSum=0.961;DP=861;ExcessHet=3.2222;FS=5.418;InbreedingCoeff=-0.1288;MLEAC=1;MLEAF=0.045;MQ=41.48;MQRankSum=-1.054;NEGATIVE_TRAIN_SITE;QD=1.51;ReadPosRankSum=-0.352;SOR=1.739;VQSLOD=-1.977;culprit=MQ;CSQ=-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000423562|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000438504|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|YES||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000450305|transcribed_unprocessed_pseudogene|||||||||||1570|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000456328|processed_transcript|||||||||||1429|1||HGNC|37102|YES||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000488147|unprocessed_pseudogene|||||||||||3964|-1||HGNC|38034|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000515242|transcribed_unprocessed_pseudogene|||||||||||1432|1||HGNC|37102|||||,-|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|Transcript|ENST00000518655|transcribed_unprocessed_pseudogene|||||||||||1434|1||HGNC|37102|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000538476|unprocessed_pseudogene|||||||||||3971|-1||HGNC|38034|||||,-|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|Transcript|ENST00000541675|unprocessed_pseudogene|||||||||||3923|-1||HGNC|38034|||||;cadd_phred=-1;gno_non_neuro_af_all=0.239586;gno_non_neuro_af_nfe=0.259883;gno_non_neuro_nhomalt_all=2;gno_non_neuro_nhomalt_nfe=0;highest_impact_order=51;all=C0011JY,C0011JZ,C0011K1,C0011K2,C0011K3,C0011K5,C0011KA,C0011KB,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:121,0:121:99:0,120,1800	0/0:85,0:85:0:0,0,1394	0/0:121,0:121:20:0,20,3067	0/0:99,0:99:99:0,117,1800	0/1:22,3:25:79:79,0,1057	0/0:95,0:95:85:0,85,2510	0/0:18,0:18:48:0,48,720	0/0:15,0:15:39:0,39,585	0/0:28,0:28:48:0,48,720	0/0:9,0:20:99:325,352,693	0/0:185,0:185:99:0,120,1800
diff --git a/example of results/PL_family_WGS_slivar_1664358140/reports/dag.dot b/example of results/PL_family_WGS_slivar_1664358140/reports/dag.dot
deleted file mode 100644
index 87727f1f57c21cd779a31a153630602386d3ef92..0000000000000000000000000000000000000000
--- a/example of results/PL_family_WGS_slivar_1664358140/reports/dag.dot	
+++ /dev/null
@@ -1,54 +0,0 @@
-digraph "dag" {
-p1 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p1 -> p11 [label="vcf"];
-
-p2 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p2 -> p11 [label="fun"];
-
-p3 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p3 -> p11 [label="annot1"];
-
-p4 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p4 -> p11 [label="annot2"];
-
-p5 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p5 -> p11 [label="ped"];
-
-p6 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p6 -> p11 [label="sample_expr"];
-
-p7 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p7 -> p11 [label="pedigree_expr"];
-
-p8 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p8 -> p11 [label="filter"];
-
-p9 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p9 -> p11 [label="tsv_sample"];
-
-p10 [shape=point,label="",fixedsize=true,width=0.1];
-p11 [label="slivar"];
-p10 -> p11 [label="tsv_info"];
-
-p12 [shape=point,label="",fixedsize=true,width=0.1];
-p15 [label="Backup"];
-p12 -> p15 [label="config_file"];
-
-p13 [shape=point,label="",fixedsize=true,width=0.1];
-p15 [label="Backup"];
-p13 -> p15 [label="log_file"];
-
-p14 [shape=point,label="",fixedsize=true,width=0.1];
-p15 [label="Backup"];
-p14 -> p15 [label="fun"];
-
-}
diff --git a/example of results/PL_family_WGS_slivar_1664358140/reports/trace.txt b/example of results/PL_family_WGS_slivar_1664358140/reports/trace.txt
deleted file mode 100644
index 18d9fa4a452bb9f3b8ad092704597e2d13774be3..0000000000000000000000000000000000000000
--- a/example of results/PL_family_WGS_slivar_1664358140/reports/trace.txt	
+++ /dev/null
@@ -1,4 +0,0 @@
-task_id	hash	native_id	name	status	exit	submit	duration	realtime	%cpu	peak_rss	peak_vmem	rchar	wchar
-3	00/e6eb69	29539507	Backup	COMPLETED	0	2022-09-28 11:42:21.685	9.7s	14ms	5.4%	0	0	122.3 KB	1.5 KB
-1	60/eb369a	29539508	WorkflowVersion	COMPLETED	0	2022-09-28 11:42:21.744	9.7s	519ms	4.6%	5.2 MB	38.5 MB	151.1 KB	3.3 KB
-2	36/8a923b	29539509	slivar	COMPLETED	0	2022-09-28 11:42:21.799	17m 40s	17m 31s	95.3%	2.2 GB	2.3 GB	6.5 GB	848.1 KB
diff --git a/example of results/PL_family_WGS_slivar_1664358140/res.tsv b/example of results/PL_family_WGS_slivar_1664358140/res.tsv
deleted file mode 100644
index e0a1b10864902d9f3fe238b83318a4e2cca99634..0000000000000000000000000000000000000000
--- a/example of results/PL_family_WGS_slivar_1664358140/res.tsv	
+++ /dev/null
@@ -1,1009 +0,0 @@
-#mode	family_id	sample_id	chr:pos:ref:alt	genotype(sample,dad,mom)	AC	AF	AN	BaseQRankSum	DB	DP	ExcessHet	FS	InbreedingCoeff	MLEAC	MLEAF	MQ	MQRankSum	QD	ReadPosRankSum	SOR	VQSLOD	culprit	CSQ	cadd_phred	gno_non_neuro_af_all	gno_non_neuro_af_nfe	gno_non_neuro_nhomalt_all	gno_non_neuro_nhomalt_nfe	highest_impact_order	aff_only	depths(sample,dad,mom)	allele_balance(sample,dad,mom)
-aff_only	fam_pl	C0011JZ	chr1:142674001:C:T	1,.,.	7	0.318	22	0.31	DB	1223	9.0714	8.045	-0.467	7	0.318	42.32	-2.342	2.86	0.256	1.492	-4.51	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000369381|lincRNA||6/8|ENST00000369381.2:n.2507+18961G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000400755|lincRNA||4/4|ENST00000400755.3:n.245+3394C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000411746|lincRNA||2/3|ENST00000411746.1:n.517-50178C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000446205|lincRNA||4/5|ENST00000446205.2:n.401-16863C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000610091|lincRNA||11/13|ENST00000610091.1:n.3560+18961G>A|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.303041	0.339451	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			101,.,.	0.148515,.,.	
-aff_only	fam_pl	C0011K2	chr1:142674001:C:T	1,.,.	7	0.318	22	0.31	DB	1223	9.0714	8.045	-0.467	7	0.318	42.32	-2.342	2.86	0.256	1.492	-4.51	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000369381|lincRNA||6/8|ENST00000369381.2:n.2507+18961G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000400755|lincRNA||4/4|ENST00000400755.3:n.245+3394C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000411746|lincRNA||2/3|ENST00000411746.1:n.517-50178C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000446205|lincRNA||4/5|ENST00000446205.2:n.401-16863C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000610091|lincRNA||11/13|ENST00000610091.1:n.3560+18961G>A|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.303041	0.339451	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			102,.,.	0.0882353,.,.	
-aff_only	fam_pl	C0011K3	chr1:142674001:C:T	1,.,.	7	0.318	22	0.31	DB	1223	9.0714	8.045	-0.467	7	0.318	42.32	-2.342	2.86	0.256	1.492	-4.51	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000369381|lincRNA||6/8|ENST00000369381.2:n.2507+18961G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000400755|lincRNA||4/4|ENST00000400755.3:n.245+3394C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000411746|lincRNA||2/3|ENST00000411746.1:n.517-50178C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000446205|lincRNA||4/5|ENST00000446205.2:n.401-16863C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000610091|lincRNA||11/13|ENST00000610091.1:n.3560+18961G>A|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.303041	0.339451	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			85,.,.	0.0941176,.,.	
-aff_only	fam_pl	C0011KA	chr1:142674001:C:T	1,.,1	7	0.318	22	0.31	DB	1223	9.0714	8.045	-0.467	7	0.318	42.32	-2.342	2.86	0.256	1.492	-4.51	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000369381|lincRNA||6/8|ENST00000369381.2:n.2507+18961G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000400755|lincRNA||4/4|ENST00000400755.3:n.245+3394C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000411746|lincRNA||2/3|ENST00000411746.1:n.517-50178C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000446205|lincRNA||4/5|ENST00000446205.2:n.401-16863C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000610091|lincRNA||11/13|ENST00000610091.1:n.3560+18961G>A|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.303041	0.339451	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			128,.,102	0.203125,.,0.0882353	
-aff_only	fam_pl	IP00FNP	chr1:142674001:C:T	1,.,1	7	0.318	22	0.31	DB	1223	9.0714	8.045	-0.467	7	0.318	42.32	-2.342	2.86	0.256	1.492	-4.51	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000369381|lincRNA||6/8|ENST00000369381.2:n.2507+18961G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000400755|lincRNA||4/4|ENST00000400755.3:n.245+3394C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000411746|lincRNA||2/3|ENST00000411746.1:n.517-50178C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000446205|lincRNA||4/5|ENST00000446205.2:n.401-16863C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000610091|lincRNA||11/13|ENST00000610091.1:n.3560+18961G>A|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.303041	0.339451	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			157,.,101	0.273885,.,0.148515	
-aff_only	fam_pl	IP00FNW	chr1:142674001:C:T	1,.,.	7	0.318	22	0.31	DB	1223	9.0714	8.045	-0.467	7	0.318	42.32	-2.342	2.86	0.256	1.492	-4.51	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000369381|lincRNA||6/8|ENST00000369381.2:n.2507+18961G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000400755|lincRNA||4/4|ENST00000400755.3:n.245+3394C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000411746|lincRNA||2/3|ENST00000411746.1:n.517-50178C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000446205|lincRNA||4/5|ENST00000446205.2:n.401-16863C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000610091|lincRNA||11/13|ENST00000610091.1:n.3560+18961G>A|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.303041	0.339451	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			61,.,.	0.147541,.,.	
-aff_only	fam_pl	IP00FNY	chr1:142674001:C:T	1,.,.	7	0.318	22	0.31	DB	1223	9.0714	8.045	-0.467	7	0.318	42.32	-2.342	2.86	0.256	1.492	-4.51	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000369381|lincRNA||6/8|ENST00000369381.2:n.2507+18961G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000400755|lincRNA||4/4|ENST00000400755.3:n.245+3394C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000411746|lincRNA||2/3|ENST00000411746.1:n.517-50178C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000446205|lincRNA||4/5|ENST00000446205.2:n.401-16863C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000610091|lincRNA||11/13|ENST00000610091.1:n.3560+18961G>A|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.303041	0.339451	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			153,.,.	0.117647,.,.	
-aff_only	fam_pl	C0011JZ	chr1:146487361:ACC:*	1,.,.	7	0.318	22	-0.103		397	20.6	13.198	-0.8858	7	0.318	29.75	1.31	0.69	1.64	1.251	-1.591	MQ		-1	-1	-1	-1	-1	2147483646	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			18,.,.	0.444444,.,.	
-aff_only	fam_pl	C0011K2	chr1:146487361:ACC:*	1,.,.	7	0.318	22	-0.103		397	20.6	13.198	-0.8858	7	0.318	29.75	1.31	0.69	1.64	1.251	-1.591	MQ		-1	-1	-1	-1	-1	2147483646	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.153846,.,.	
-aff_only	fam_pl	C0011K3	chr1:146487361:ACC:*	1,.,.	7	0.318	22	-0.103		397	20.6	13.198	-0.8858	7	0.318	29.75	1.31	0.69	1.64	1.251	-1.591	MQ		-1	-1	-1	-1	-1	2147483646	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.0810811,.,.	
-aff_only	fam_pl	C0011KA	chr1:146487361:ACC:*	1,.,1	7	0.318	22	-0.103		397	20.6	13.198	-0.8858	7	0.318	29.75	1.31	0.69	1.64	1.251	-1.591	MQ		-1	-1	-1	-1	-1	2147483646	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			27,.,39	0.148148,.,0.153846	
-aff_only	fam_pl	IP00FNP	chr1:146487361:ACC:*	1,.,1	7	0.318	22	-0.103		397	20.6	13.198	-0.8858	7	0.318	29.75	1.31	0.69	1.64	1.251	-1.591	MQ		-1	-1	-1	-1	-1	2147483646	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,18	0.419355,.,0.444444	
-aff_only	fam_pl	IP00FNW	chr1:146487361:ACC:*	1,.,.	7	0.318	22	-0.103		397	20.6	13.198	-0.8858	7	0.318	29.75	1.31	0.69	1.64	1.251	-1.591	MQ		-1	-1	-1	-1	-1	2147483646	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			24,.,.	0.5,.,.	
-aff_only	fam_pl	IP00FNY	chr1:146487361:ACC:*	1,.,.	7	0.318	22	-0.103		397	20.6	13.198	-0.8858	7	0.318	29.75	1.31	0.69	1.64	1.251	-1.591	MQ		-1	-1	-1	-1	-1	2147483646	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			63,.,.	0.31746,.,.	
-aff_only	fam_pl	C0011JZ	chr2:53605544:T:TTTTTA	1,.,.	7	0.318	22	0.754	DB	504	9.0714	6.984	-0.4667	7	0.318	60.09	0	21.37	-0.352	0.727	8.51	MQRankSum	TTTTA|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.453228	0.357854	2369	819	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			21,.,.	0.52381,.,.	
-aff_only	fam_pl	C0011K2	chr2:53605544:T:TTTTTA	1,.,.	7	0.318	22	0.754	DB	504	9.0714	6.984	-0.4667	7	0.318	60.09	0	21.37	-0.352	0.727	8.51	MQRankSum	TTTTA|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.453228	0.357854	2369	819	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.516129,.,.	
-aff_only	fam_pl	C0011K3	chr2:53605544:T:TTTTTA	1,.,.	7	0.318	22	0.754	DB	504	9.0714	6.984	-0.4667	7	0.318	60.09	0	21.37	-0.352	0.727	8.51	MQRankSum	TTTTA|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.453228	0.357854	2369	819	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.447368,.,.	
-aff_only	fam_pl	C0011KA	chr2:53605544:T:TTTTTA	1,.,1	7	0.318	22	0.754	DB	504	9.0714	6.984	-0.4667	7	0.318	60.09	0	21.37	-0.352	0.727	8.51	MQRankSum	TTTTA|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.453228	0.357854	2369	819	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,31	0.545455,.,0.516129	
-aff_only	fam_pl	IP00FNP	chr2:53605544:T:TTTTTA	1,.,1	7	0.318	22	0.754	DB	504	9.0714	6.984	-0.4667	7	0.318	60.09	0	21.37	-0.352	0.727	8.51	MQRankSum	TTTTA|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.453228	0.357854	2369	819	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			55,.,21	0.6,.,0.52381	
-aff_only	fam_pl	IP00FNW	chr2:53605544:T:TTTTTA	1,.,.	7	0.318	22	0.754	DB	504	9.0714	6.984	-0.4667	7	0.318	60.09	0	21.37	-0.352	0.727	8.51	MQRankSum	TTTTA|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.453228	0.357854	2369	819	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.555556,.,.	
-aff_only	fam_pl	IP00FNY	chr2:53605544:T:TTTTTA	1,.,.	7	0.318	22	0.754	DB	504	9.0714	6.984	-0.4667	7	0.318	60.09	0	21.37	-0.352	0.727	8.51	MQRankSum	TTTTA|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.453228	0.357854	2369	819	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			73,.,.	0.493151,.,.	
-aff_only	fam_pl	C0011JZ	chr2:53606631:C:T	1,.,.	7	0.318	22	1.23	DB	519	9.0714	0	-0.4667	7	0.318	60	0	14.71	0.429	0.7	23.52	MQRankSum	T|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.454644	0.358489	2456	857	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,.	0.470588,.,.	
-aff_only	fam_pl	C0011K2	chr2:53606631:C:T	1,.,.	7	0.318	22	1.23	DB	519	9.0714	0	-0.4667	7	0.318	60	0	14.71	0.429	0.7	23.52	MQRankSum	T|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.454644	0.358489	2456	857	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.578947,.,.	
-aff_only	fam_pl	C0011K3	chr2:53606631:C:T	1,.,.	7	0.318	22	1.23	DB	519	9.0714	0	-0.4667	7	0.318	60	0	14.71	0.429	0.7	23.52	MQRankSum	T|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.454644	0.358489	2456	857	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,.	0.538462,.,.	
-aff_only	fam_pl	C0011KA	chr2:53606631:C:T	1,.,1	7	0.318	22	1.23	DB	519	9.0714	0	-0.4667	7	0.318	60	0	14.71	0.429	0.7	23.52	MQRankSum	T|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.454644	0.358489	2456	857	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,38	0.472222,.,0.578947	
-aff_only	fam_pl	IP00FNP	chr2:53606631:C:T	1,.,1	7	0.318	22	1.23	DB	519	9.0714	0	-0.4667	7	0.318	60	0	14.71	0.429	0.7	23.52	MQRankSum	T|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.454644	0.358489	2456	857	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			61,.,51	0.491803,.,0.470588	
-aff_only	fam_pl	IP00FNW	chr2:53606631:C:T	1,.,.	7	0.318	22	1.23	DB	519	9.0714	0	-0.4667	7	0.318	60	0	14.71	0.429	0.7	23.52	MQRankSum	T|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.454644	0.358489	2456	857	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			62,.,.	0.483871,.,.	
-aff_only	fam_pl	IP00FNY	chr2:53606631:C:T	1,.,.	7	0.318	22	1.23	DB	519	9.0714	0	-0.4667	7	0.318	60	0	14.71	0.429	0.7	23.52	MQRankSum	T|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.454644	0.358489	2456	857	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			71,.,.	0.577465,.,.	
-aff_only	fam_pl	C0011JZ	chr2:53611448:T:A	1,.,.	7	0.318	22	0	DB	484	9.0714	0.388	-0.4667	7	0.318	60	0	14.87	-0.338	0.726	23.79	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.457699	0.358439	2490	851	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,.	0.5,.,.	
-aff_only	fam_pl	C0011K2	chr2:53611448:T:A	1,.,.	7	0.318	22	0	DB	484	9.0714	0.388	-0.4667	7	0.318	60	0	14.87	-0.338	0.726	23.79	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.457699	0.358439	2490	851	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.613636,.,.	
-aff_only	fam_pl	C0011K3	chr2:53611448:T:A	1,.,.	7	0.318	22	0	DB	484	9.0714	0.388	-0.4667	7	0.318	60	0	14.87	-0.338	0.726	23.79	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.457699	0.358439	2490	851	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.617021,.,.	
-aff_only	fam_pl	C0011KA	chr2:53611448:T:A	1,.,1	7	0.318	22	0	DB	484	9.0714	0.388	-0.4667	7	0.318	60	0	14.87	-0.338	0.726	23.79	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.457699	0.358439	2490	851	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,44	0.558824,.,0.613636	
-aff_only	fam_pl	IP00FNP	chr2:53611448:T:A	1,.,1	7	0.318	22	0	DB	484	9.0714	0.388	-0.4667	7	0.318	60	0	14.87	-0.338	0.726	23.79	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.457699	0.358439	2490	851	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			64,.,34	0.4375,.,0.5	
-aff_only	fam_pl	IP00FNW	chr2:53611448:T:A	1,.,.	7	0.318	22	0	DB	484	9.0714	0.388	-0.4667	7	0.318	60	0	14.87	-0.338	0.726	23.79	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.457699	0.358439	2490	851	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			58,.,.	0.448276,.,.	
-aff_only	fam_pl	IP00FNY	chr2:53611448:T:A	1,.,.	7	0.318	22	0	DB	484	9.0714	0.388	-0.4667	7	0.318	60	0	14.87	-0.338	0.726	23.79	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.457699	0.358439	2490	851	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			67,.,.	0.567164,.,.	
-aff_only	fam_pl	C0011JZ	chr2:55855379:CA:C	1,.,.	7	0.318	22	0.566	DB	226	5.8108	6.666	-0.3786	6	0.273	59.92	0	7.71	0.366	1.483	5.55	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.581573	0.577764	1048	734	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			9,.,.	0.666667,.,.	
-aff_only	fam_pl	C0011K2	chr2:55855379:CA:C	1,.,.	7	0.318	22	0.566	DB	226	5.8108	6.666	-0.3786	6	0.273	59.92	0	7.71	0.366	1.483	5.55	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.581573	0.577764	1048	734	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			7,.,.	0.857143,.,.	
-aff_only	fam_pl	C0011K3	chr2:55855379:CA:C	1,.,.	7	0.318	22	0.566	DB	226	5.8108	6.666	-0.3786	6	0.273	59.92	0	7.71	0.366	1.483	5.55	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.581573	0.577764	1048	734	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			12,.,.	0.583333,.,.	
-aff_only	fam_pl	C0011KA	chr2:55855379:CA:C	1,.,1	7	0.318	22	0.566	DB	226	5.8108	6.666	-0.3786	6	0.273	59.92	0	7.71	0.366	1.483	5.55	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.581573	0.577764	1048	734	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			14,.,7	0.714286,.,0.857143	
-aff_only	fam_pl	IP00FNP	chr2:55855379:CA:C	1,.,1	7	0.318	22	0.566	DB	226	5.8108	6.666	-0.3786	6	0.273	59.92	0	7.71	0.366	1.483	5.55	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.581573	0.577764	1048	734	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			4,.,9	0.25,.,0.666667	
-aff_only	fam_pl	IP00FNW	chr2:55855379:CA:C	1,.,.	7	0.318	22	0.566	DB	226	5.8108	6.666	-0.3786	6	0.273	59.92	0	7.71	0.366	1.483	5.55	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.581573	0.577764	1048	734	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			5,.,.	0.8,.,.	
-aff_only	fam_pl	IP00FNY	chr2:55855379:CA:C	1,.,.	7	0.318	22	0.566	DB	226	5.8108	6.666	-0.3786	6	0.273	59.92	0	7.71	0.366	1.483	5.55	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.581573	0.577764	1048	734	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			7,.,.	0.428571,.,.	
-aff_only	fam_pl	C0011JZ	chr2:61475320:CA:C	1,.,.	7	0.318	22	0	DB	252	4.3978	0	-0.2173	7	0.318	57.71	0	9.68	0.199	0.618	1.8	MQRankSum	-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000398571|protein_coding||49/79|ENST00000398571.2:c.6394+325del|||||||||-1||HGNC|20066|YES|CCDS42686.1|||,-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000453734|protein_coding||11/23|ENST00000453734.1:c.1228+325del|||||||||-1|cds_start_NF|HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000463046|retained_intron||3/27|ENST00000463046.1:n.282+325del|||||||||-1||HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000472706|processed_transcript||2/4|ENST00000472706.1:n.209-26580del|||||||||-1||HGNC|20066|||||,-|upstream_gene_variant|MODIFIER|RP11-479F13.1|ENSG00000271146|Transcript|ENST00000605372|processed_pseudogene|||||||||||1594|1||Clone_based_vega_gene||YES||||	-1	0.357445	0.346886	139	80	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			11,.,.	0.545455,.,.	
-aff_only	fam_pl	C0011K2	chr2:61475320:CA:C	1,.,.	7	0.318	22	0	DB	252	4.3978	0	-0.2173	7	0.318	57.71	0	9.68	0.199	0.618	1.8	MQRankSum	-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000398571|protein_coding||49/79|ENST00000398571.2:c.6394+325del|||||||||-1||HGNC|20066|YES|CCDS42686.1|||,-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000453734|protein_coding||11/23|ENST00000453734.1:c.1228+325del|||||||||-1|cds_start_NF|HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000463046|retained_intron||3/27|ENST00000463046.1:n.282+325del|||||||||-1||HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000472706|processed_transcript||2/4|ENST00000472706.1:n.209-26580del|||||||||-1||HGNC|20066|||||,-|upstream_gene_variant|MODIFIER|RP11-479F13.1|ENSG00000271146|Transcript|ENST00000605372|processed_pseudogene|||||||||||1594|1||Clone_based_vega_gene||YES||||	-1	0.357445	0.346886	139	80	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			17,.,.	0.529412,.,.	
-aff_only	fam_pl	C0011K3	chr2:61475320:CA:C	1,.,.	7	0.318	22	0	DB	252	4.3978	0	-0.2173	7	0.318	57.71	0	9.68	0.199	0.618	1.8	MQRankSum	-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000398571|protein_coding||49/79|ENST00000398571.2:c.6394+325del|||||||||-1||HGNC|20066|YES|CCDS42686.1|||,-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000453734|protein_coding||11/23|ENST00000453734.1:c.1228+325del|||||||||-1|cds_start_NF|HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000463046|retained_intron||3/27|ENST00000463046.1:n.282+325del|||||||||-1||HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000472706|processed_transcript||2/4|ENST00000472706.1:n.209-26580del|||||||||-1||HGNC|20066|||||,-|upstream_gene_variant|MODIFIER|RP11-479F13.1|ENSG00000271146|Transcript|ENST00000605372|processed_pseudogene|||||||||||1594|1||Clone_based_vega_gene||YES||||	-1	0.357445	0.346886	139	80	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			11,.,.	0.545455,.,.	
-aff_only	fam_pl	C0011KA	chr2:61475320:CA:C	1,.,1	7	0.318	22	0	DB	252	4.3978	0	-0.2173	7	0.318	57.71	0	9.68	0.199	0.618	1.8	MQRankSum	-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000398571|protein_coding||49/79|ENST00000398571.2:c.6394+325del|||||||||-1||HGNC|20066|YES|CCDS42686.1|||,-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000453734|protein_coding||11/23|ENST00000453734.1:c.1228+325del|||||||||-1|cds_start_NF|HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000463046|retained_intron||3/27|ENST00000463046.1:n.282+325del|||||||||-1||HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000472706|processed_transcript||2/4|ENST00000472706.1:n.209-26580del|||||||||-1||HGNC|20066|||||,-|upstream_gene_variant|MODIFIER|RP11-479F13.1|ENSG00000271146|Transcript|ENST00000605372|processed_pseudogene|||||||||||1594|1||Clone_based_vega_gene||YES||||	-1	0.357445	0.346886	139	80	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			7,.,17	0.857143,.,0.529412	
-aff_only	fam_pl	IP00FNP	chr2:61475320:CA:C	1,.,1	7	0.318	22	0	DB	252	4.3978	0	-0.2173	7	0.318	57.71	0	9.68	0.199	0.618	1.8	MQRankSum	-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000398571|protein_coding||49/79|ENST00000398571.2:c.6394+325del|||||||||-1||HGNC|20066|YES|CCDS42686.1|||,-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000453734|protein_coding||11/23|ENST00000453734.1:c.1228+325del|||||||||-1|cds_start_NF|HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000463046|retained_intron||3/27|ENST00000463046.1:n.282+325del|||||||||-1||HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000472706|processed_transcript||2/4|ENST00000472706.1:n.209-26580del|||||||||-1||HGNC|20066|||||,-|upstream_gene_variant|MODIFIER|RP11-479F13.1|ENSG00000271146|Transcript|ENST00000605372|processed_pseudogene|||||||||||1594|1||Clone_based_vega_gene||YES||||	-1	0.357445	0.346886	139	80	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			8,.,11	0.5,.,0.545455	
-aff_only	fam_pl	IP00FNW	chr2:61475320:CA:C	1,.,.	7	0.318	22	0	DB	252	4.3978	0	-0.2173	7	0.318	57.71	0	9.68	0.199	0.618	1.8	MQRankSum	-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000398571|protein_coding||49/79|ENST00000398571.2:c.6394+325del|||||||||-1||HGNC|20066|YES|CCDS42686.1|||,-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000453734|protein_coding||11/23|ENST00000453734.1:c.1228+325del|||||||||-1|cds_start_NF|HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000463046|retained_intron||3/27|ENST00000463046.1:n.282+325del|||||||||-1||HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000472706|processed_transcript||2/4|ENST00000472706.1:n.209-26580del|||||||||-1||HGNC|20066|||||,-|upstream_gene_variant|MODIFIER|RP11-479F13.1|ENSG00000271146|Transcript|ENST00000605372|processed_pseudogene|||||||||||1594|1||Clone_based_vega_gene||YES||||	-1	0.357445	0.346886	139	80	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			7,.,.	0.428571,.,.	
-aff_only	fam_pl	IP00FNY	chr2:61475320:CA:C	1,.,.	7	0.318	22	0	DB	252	4.3978	0	-0.2173	7	0.318	57.71	0	9.68	0.199	0.618	1.8	MQRankSum	-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000398571|protein_coding||49/79|ENST00000398571.2:c.6394+325del|||||||||-1||HGNC|20066|YES|CCDS42686.1|||,-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000453734|protein_coding||11/23|ENST00000453734.1:c.1228+325del|||||||||-1|cds_start_NF|HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000463046|retained_intron||3/27|ENST00000463046.1:n.282+325del|||||||||-1||HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000472706|processed_transcript||2/4|ENST00000472706.1:n.209-26580del|||||||||-1||HGNC|20066|||||,-|upstream_gene_variant|MODIFIER|RP11-479F13.1|ENSG00000271146|Transcript|ENST00000605372|processed_pseudogene|||||||||||1594|1||Clone_based_vega_gene||YES||||	-1	0.357445	0.346886	139	80	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			5,.,.	0.2,.,.	
-aff_only	fam_pl	C0011JZ	chr2:65103319:T:C	1,.,.	7	0.318	22	0.267	DB	396	9.0714	6.104	-0.4667	7	0.318	60	0	14.35	-0.821	0.842	24	MQRankSum	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	14.1	0.556663	0.484578	3367	1561	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			24,.,.	0.416667,.,.	
-aff_only	fam_pl	C0011K2	chr2:65103319:T:C	1,.,.	7	0.318	22	0.267	DB	396	9.0714	6.104	-0.4667	7	0.318	60	0	14.35	-0.821	0.842	24	MQRankSum	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	14.1	0.556663	0.484578	3367	1561	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.354839,.,.	
-aff_only	fam_pl	C0011K3	chr2:65103319:T:C	1,.,.	7	0.318	22	0.267	DB	396	9.0714	6.104	-0.4667	7	0.318	60	0	14.35	-0.821	0.842	24	MQRankSum	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	14.1	0.556663	0.484578	3367	1561	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.583333,.,.	
-aff_only	fam_pl	C0011KA	chr2:65103319:T:C	1,.,1	7	0.318	22	0.267	DB	396	9.0714	6.104	-0.4667	7	0.318	60	0	14.35	-0.821	0.842	24	MQRankSum	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	14.1	0.556663	0.484578	3367	1561	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,31	0.464286,.,0.354839	
-aff_only	fam_pl	IP00FNP	chr2:65103319:T:C	1,.,1	7	0.318	22	0.267	DB	396	9.0714	6.104	-0.4667	7	0.318	60	0	14.35	-0.821	0.842	24	MQRankSum	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	14.1	0.556663	0.484578	3367	1561	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,24	0.638889,.,0.416667	
-aff_only	fam_pl	IP00FNW	chr2:65103319:T:C	1,.,.	7	0.318	22	0.267	DB	396	9.0714	6.104	-0.4667	7	0.318	60	0	14.35	-0.821	0.842	24	MQRankSum	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	14.1	0.556663	0.484578	3367	1561	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.578947,.,.	
-aff_only	fam_pl	IP00FNY	chr2:65103319:T:C	1,.,.	7	0.318	22	0.267	DB	396	9.0714	6.104	-0.4667	7	0.318	60	0	14.35	-0.821	0.842	24	MQRankSum	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	14.1	0.556663	0.484578	3367	1561	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,.	0.543478,.,.	
-aff_only	fam_pl	C0011JZ	chr2:65103814:A:G	1,.,.	7	0.318	22	-1.192	DB	449	9.0714	3.177	-0.4667	7	0.318	60	0	11.16	-0.024	0.534	23.48	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.506841	0.473258	2723	1490	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.387097,.,.	
-aff_only	fam_pl	C0011K2	chr2:65103814:A:G	1,.,.	7	0.318	22	-1.192	DB	449	9.0714	3.177	-0.4667	7	0.318	60	0	11.16	-0.024	0.534	23.48	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.506841	0.473258	2723	1490	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,.	0.413793,.,.	
-aff_only	fam_pl	C0011K3	chr2:65103814:A:G	1,.,.	7	0.318	22	-1.192	DB	449	9.0714	3.177	-0.4667	7	0.318	60	0	11.16	-0.024	0.534	23.48	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.506841	0.473258	2723	1490	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.454545,.,.	
-aff_only	fam_pl	C0011KA	chr2:65103814:A:G	1,.,1	7	0.318	22	-1.192	DB	449	9.0714	3.177	-0.4667	7	0.318	60	0	11.16	-0.024	0.534	23.48	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.506841	0.473258	2723	1490	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			23,.,29	0.565217,.,0.413793	
-aff_only	fam_pl	IP00FNP	chr2:65103814:A:G	1,.,1	7	0.318	22	-1.192	DB	449	9.0714	3.177	-0.4667	7	0.318	60	0	11.16	-0.024	0.534	23.48	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.506841	0.473258	2723	1490	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			62,.,31	0.403226,.,0.387097	
-aff_only	fam_pl	IP00FNW	chr2:65103814:A:G	1,.,.	7	0.318	22	-1.192	DB	449	9.0714	3.177	-0.4667	7	0.318	60	0	11.16	-0.024	0.534	23.48	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.506841	0.473258	2723	1490	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,.	0.5,.,.	
-aff_only	fam_pl	IP00FNY	chr2:65103814:A:G	1,.,.	7	0.318	22	-1.192	DB	449	9.0714	3.177	-0.4667	7	0.318	60	0	11.16	-0.024	0.534	23.48	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.506841	0.473258	2723	1490	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			59,.,.	0.440678,.,.	
-aff_only	fam_pl	C0011JZ	chr2:65103931:G:GTTT	1,.,.	7	0.318	22	0.179	DB	397	9.0714	2.238	-0.4667	7	0.318	60	0	19.41	-0.356	0.871	8.92	MQRankSum	TTT|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.509393	0.46758	2515	1338	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			18,.,.	0.555556,.,.	
-aff_only	fam_pl	C0011K2	chr2:65103931:G:GTTT	1,.,.	7	0.318	22	0.179	DB	397	9.0714	2.238	-0.4667	7	0.318	60	0	19.41	-0.356	0.871	8.92	MQRankSum	TTT|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.509393	0.46758	2515	1338	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.333333,.,.	
-aff_only	fam_pl	C0011K3	chr2:65103931:G:GTTT	1,.,.	7	0.318	22	0.179	DB	397	9.0714	2.238	-0.4667	7	0.318	60	0	19.41	-0.356	0.871	8.92	MQRankSum	TTT|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.509393	0.46758	2515	1338	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.454545,.,.	
-aff_only	fam_pl	C0011KA	chr2:65103931:G:GTTT	1,.,1	7	0.318	22	0.179	DB	397	9.0714	2.238	-0.4667	7	0.318	60	0	19.41	-0.356	0.871	8.92	MQRankSum	TTT|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.509393	0.46758	2515	1338	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			23,.,36	0.695652,.,0.333333	
-aff_only	fam_pl	IP00FNP	chr2:65103931:G:GTTT	1,.,1	7	0.318	22	0.179	DB	397	9.0714	2.238	-0.4667	7	0.318	60	0	19.41	-0.356	0.871	8.92	MQRankSum	TTT|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.509393	0.46758	2515	1338	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,18	0.571429,.,0.555556	
-aff_only	fam_pl	IP00FNW	chr2:65103931:G:GTTT	1,.,.	7	0.318	22	0.179	DB	397	9.0714	2.238	-0.4667	7	0.318	60	0	19.41	-0.356	0.871	8.92	MQRankSum	TTT|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.509393	0.46758	2515	1338	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.571429,.,.	
-aff_only	fam_pl	IP00FNY	chr2:65103931:G:GTTT	1,.,.	7	0.318	22	0.179	DB	397	9.0714	2.238	-0.4667	7	0.318	60	0	19.41	-0.356	0.871	8.92	MQRankSum	TTT|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.509393	0.46758	2515	1338	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.466667,.,.	
-aff_only	fam_pl	C0011JZ	chr2:65103983:G:A	1,.,.	7	0.318	22	-0.904	DB	381	9.0714	7.072	-0.4667	7	0.318	60	0	13.24	-0.244	0.843	24.28	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.504025	0.469158	2647	1431	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			23,.,.	0.565217,.,.	
-aff_only	fam_pl	C0011K2	chr2:65103983:G:A	1,.,.	7	0.318	22	-0.904	DB	381	9.0714	7.072	-0.4667	7	0.318	60	0	13.24	-0.244	0.843	24.28	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.504025	0.469158	2647	1431	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.333333,.,.	
-aff_only	fam_pl	C0011K3	chr2:65103983:G:A	1,.,.	7	0.318	22	-0.904	DB	381	9.0714	7.072	-0.4667	7	0.318	60	0	13.24	-0.244	0.843	24.28	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.504025	0.469158	2647	1431	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.516129,.,.	
-aff_only	fam_pl	C0011KA	chr2:65103983:G:A	1,.,1	7	0.318	22	-0.904	DB	381	9.0714	7.072	-0.4667	7	0.318	60	0	13.24	-0.244	0.843	24.28	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.504025	0.469158	2647	1431	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,39	0.692308,.,0.333333	
-aff_only	fam_pl	IP00FNP	chr2:65103983:G:A	1,.,1	7	0.318	22	-0.904	DB	381	9.0714	7.072	-0.4667	7	0.318	60	0	13.24	-0.244	0.843	24.28	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.504025	0.469158	2647	1431	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,23	0.475,.,0.565217	
-aff_only	fam_pl	IP00FNW	chr2:65103983:G:A	1,.,.	7	0.318	22	-0.904	DB	381	9.0714	7.072	-0.4667	7	0.318	60	0	13.24	-0.244	0.843	24.28	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.504025	0.469158	2647	1431	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.6,.,.	
-aff_only	fam_pl	IP00FNY	chr2:65103983:G:A	1,.,.	7	0.318	22	-0.904	DB	381	9.0714	7.072	-0.4667	7	0.318	60	0	13.24	-0.244	0.843	24.28	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.504025	0.469158	2647	1431	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.377778,.,.	
-aff_only	fam_pl	C0011JZ	chr2:65104485:A:G	1,.,.	7	0.318	22	-1.493	DB	473	9.0714	0	-0.4667	7	0.318	60	0	13.76	0	0.705	23.5	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.52367	0.475941	2933	1508	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,.	0.575,.,.	
-aff_only	fam_pl	C0011K2	chr2:65104485:A:G	1,.,.	7	0.318	22	-1.493	DB	473	9.0714	0	-0.4667	7	0.318	60	0	13.76	0	0.705	23.5	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.52367	0.475941	2933	1508	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.619048,.,.	
-aff_only	fam_pl	C0011K3	chr2:65104485:A:G	1,.,.	7	0.318	22	-1.493	DB	473	9.0714	0	-0.4667	7	0.318	60	0	13.76	0	0.705	23.5	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.52367	0.475941	2933	1508	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,.	0.543478,.,.	
-aff_only	fam_pl	C0011KA	chr2:65104485:A:G	1,.,1	7	0.318	22	-1.493	DB	473	9.0714	0	-0.4667	7	0.318	60	0	13.76	0	0.705	23.5	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.52367	0.475941	2933	1508	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,42	0.324324,.,0.619048	
-aff_only	fam_pl	IP00FNP	chr2:65104485:A:G	1,.,1	7	0.318	22	-1.493	DB	473	9.0714	0	-0.4667	7	0.318	60	0	13.76	0	0.705	23.5	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.52367	0.475941	2933	1508	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			53,.,40	0.528302,.,0.575	
-aff_only	fam_pl	IP00FNW	chr2:65104485:A:G	1,.,.	7	0.318	22	-1.493	DB	473	9.0714	0	-0.4667	7	0.318	60	0	13.76	0	0.705	23.5	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.52367	0.475941	2933	1508	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.465116,.,.	
-aff_only	fam_pl	IP00FNY	chr2:65104485:A:G	1,.,.	7	0.318	22	-1.493	DB	473	9.0714	0	-0.4667	7	0.318	60	0	13.76	0	0.705	23.5	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.52367	0.475941	2933	1508	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			58,.,.	0.637931,.,.	
-aff_only	fam_pl	C0011JZ	chr2:65106350:C:T	1,.,.	7	0.318	22	0.16	DB	462	9.0714	0.869	-0.4667	7	0.318	60	0	13.84	-0.173	0.697	23.74	MQRankSum	T|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.527461	0.475917	2999	1513	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.594595,.,.	
-aff_only	fam_pl	C0011K2	chr2:65106350:C:T	1,.,.	7	0.318	22	0.16	DB	462	9.0714	0.869	-0.4667	7	0.318	60	0	13.84	-0.173	0.697	23.74	MQRankSum	T|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.527461	0.475917	2999	1513	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,.	0.466667,.,.	
-aff_only	fam_pl	C0011K3	chr2:65106350:C:T	1,.,.	7	0.318	22	0.16	DB	462	9.0714	0.869	-0.4667	7	0.318	60	0	13.84	-0.173	0.697	23.74	MQRankSum	T|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.527461	0.475917	2999	1513	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,.	0.478261,.,.	
-aff_only	fam_pl	C0011KA	chr2:65106350:C:T	1,.,1	7	0.318	22	0.16	DB	462	9.0714	0.869	-0.4667	7	0.318	60	0	13.84	-0.173	0.697	23.74	MQRankSum	T|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.527461	0.475917	2999	1513	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,30	0.441176,.,0.466667	
-aff_only	fam_pl	IP00FNP	chr2:65106350:C:T	1,.,1	7	0.318	22	0.16	DB	462	9.0714	0.869	-0.4667	7	0.318	60	0	13.84	-0.173	0.697	23.74	MQRankSum	T|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.527461	0.475917	2999	1513	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			56,.,37	0.571429,.,0.594595	
-aff_only	fam_pl	IP00FNW	chr2:65106350:C:T	1,.,.	7	0.318	22	0.16	DB	462	9.0714	0.869	-0.4667	7	0.318	60	0	13.84	-0.173	0.697	23.74	MQRankSum	T|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.527461	0.475917	2999	1513	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.358974,.,.	
-aff_only	fam_pl	IP00FNY	chr2:65106350:C:T	1,.,.	7	0.318	22	0.16	DB	462	9.0714	0.869	-0.4667	7	0.318	60	0	13.84	-0.173	0.697	23.74	MQRankSum	T|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.527461	0.475917	2999	1513	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			62,.,.	0.516129,.,.	
-aff_only	fam_pl	C0011JZ	chr2:65106492:A:G	1,.,.	7	0.318	22	-0.85	DB	446	9.0714	3.167	-0.4667	7	0.318	60	0	13.25	0.09	0.883	23.77	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.528879	0.47651	3011	1513	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,.	0.4,.,.	
-aff_only	fam_pl	C0011K2	chr2:65106492:A:G	1,.,.	7	0.318	22	-0.85	DB	446	9.0714	3.167	-0.4667	7	0.318	60	0	13.25	0.09	0.883	23.77	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.528879	0.47651	3011	1513	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.387097,.,.	
-aff_only	fam_pl	C0011K3	chr2:65106492:A:G	1,.,.	7	0.318	22	-0.85	DB	446	9.0714	3.167	-0.4667	7	0.318	60	0	13.25	0.09	0.883	23.77	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.528879	0.47651	3011	1513	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,.	0.4,.,.	
-aff_only	fam_pl	C0011KA	chr2:65106492:A:G	1,.,1	7	0.318	22	-0.85	DB	446	9.0714	3.167	-0.4667	7	0.318	60	0	13.25	0.09	0.883	23.77	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.528879	0.47651	3011	1513	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,31	0.515152,.,0.387097	
-aff_only	fam_pl	IP00FNP	chr2:65106492:A:G	1,.,1	7	0.318	22	-0.85	DB	446	9.0714	3.167	-0.4667	7	0.318	60	0	13.25	0.09	0.883	23.77	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.528879	0.47651	3011	1513	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,30	0.555556,.,0.4	
-aff_only	fam_pl	IP00FNW	chr2:65106492:A:G	1,.,.	7	0.318	22	-0.85	DB	446	9.0714	3.167	-0.4667	7	0.318	60	0	13.25	0.09	0.883	23.77	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.528879	0.47651	3011	1513	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			54,.,.	0.537037,.,.	
-aff_only	fam_pl	IP00FNY	chr2:65106492:A:G	1,.,.	7	0.318	22	-0.85	DB	446	9.0714	3.167	-0.4667	7	0.318	60	0	13.25	0.09	0.883	23.77	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.528879	0.47651	3011	1513	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			59,.,.	0.491525,.,.	
-aff_only	fam_pl	C0011JZ	chr2:65106712:T:TG	1,.,.	7	0.318	22	-0.845	DB	422	9.0714	8.562	-0.4667	7	0.318	60.04	0	13.46	-0.241	1.136	8.78	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.552132	0.482733	3298	1553	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,.	0.466667,.,.	
-aff_only	fam_pl	C0011K2	chr2:65106712:T:TG	1,.,.	7	0.318	22	-0.845	DB	422	9.0714	8.562	-0.4667	7	0.318	60.04	0	13.46	-0.241	1.136	8.78	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.552132	0.482733	3298	1553	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,.	0.482759,.,.	
-aff_only	fam_pl	C0011K3	chr2:65106712:T:TG	1,.,.	7	0.318	22	-0.845	DB	422	9.0714	8.562	-0.4667	7	0.318	60.04	0	13.46	-0.241	1.136	8.78	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.552132	0.482733	3298	1553	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.511628,.,.	
-aff_only	fam_pl	C0011KA	chr2:65106712:T:TG	1,.,1	7	0.318	22	-0.845	DB	422	9.0714	8.562	-0.4667	7	0.318	60.04	0	13.46	-0.241	1.136	8.78	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.552132	0.482733	3298	1553	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,29	0.575,.,0.482759	
-aff_only	fam_pl	IP00FNP	chr2:65106712:T:TG	1,.,1	7	0.318	22	-0.845	DB	422	9.0714	8.562	-0.4667	7	0.318	60.04	0	13.46	-0.241	1.136	8.78	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.552132	0.482733	3298	1553	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			49,.,30	0.469388,.,0.466667	
-aff_only	fam_pl	IP00FNW	chr2:65106712:T:TG	1,.,.	7	0.318	22	-0.845	DB	422	9.0714	8.562	-0.4667	7	0.318	60.04	0	13.46	-0.241	1.136	8.78	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.552132	0.482733	3298	1553	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,.	0.53125,.,.	
-aff_only	fam_pl	IP00FNY	chr2:65106712:T:TG	1,.,.	7	0.318	22	-0.845	DB	422	9.0714	8.562	-0.4667	7	0.318	60.04	0	13.46	-0.241	1.136	8.78	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.552132	0.482733	3298	1553	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.555556,.,.	
-aff_only	fam_pl	C0011JZ	chr2:65107942:G:A	1,.,.	7	0.318	22	1.59	DB	447	9.0714	3.057	-0.4667	7	0.318	60	0	13.29	0.115	0.764	23.72	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.493539	0.469991	2570	1474	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			20,.,.	0.45,.,.	
-aff_only	fam_pl	C0011K2	chr2:65107942:G:A	1,.,.	7	0.318	22	1.59	DB	447	9.0714	3.057	-0.4667	7	0.318	60	0	13.29	0.115	0.764	23.72	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.493539	0.469991	2570	1474	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.531915,.,.	
-aff_only	fam_pl	C0011K3	chr2:65107942:G:A	1,.,.	7	0.318	22	1.59	DB	447	9.0714	3.057	-0.4667	7	0.318	60	0	13.29	0.115	0.764	23.72	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.493539	0.469991	2570	1474	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.44186,.,.	
-aff_only	fam_pl	C0011KA	chr2:65107942:G:A	1,.,1	7	0.318	22	1.59	DB	447	9.0714	3.057	-0.4667	7	0.318	60	0	13.29	0.115	0.764	23.72	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.493539	0.469991	2570	1474	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,47	0.55,.,0.531915	
-aff_only	fam_pl	IP00FNP	chr2:65107942:G:A	1,.,1	7	0.318	22	1.59	DB	447	9.0714	3.057	-0.4667	7	0.318	60	0	13.29	0.115	0.764	23.72	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.493539	0.469991	2570	1474	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,20	0.48,.,0.45	
-aff_only	fam_pl	IP00FNW	chr2:65107942:G:A	1,.,.	7	0.318	22	1.59	DB	447	9.0714	3.057	-0.4667	7	0.318	60	0	13.29	0.115	0.764	23.72	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.493539	0.469991	2570	1474	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.333333,.,.	
-aff_only	fam_pl	IP00FNY	chr2:65107942:G:A	1,.,.	7	0.318	22	1.59	DB	447	9.0714	3.057	-0.4667	7	0.318	60	0	13.29	0.115	0.764	23.72	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.493539	0.469991	2570	1474	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			73,.,.	0.493151,.,.	
-aff_only	fam_pl	C0011JZ	chr2:65108615:T:C	1,.,.	7	0.318	22	-1.861	DB	479	9.0714	8.259	-0.4667	7	0.318	60	0	12.78	0.189	0.421	23.99	MQRankSum	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.523677	0.476583	2941	1515	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.580645,.,.	
-aff_only	fam_pl	C0011K2	chr2:65108615:T:C	1,.,.	7	0.318	22	-1.861	DB	479	9.0714	8.259	-0.4667	7	0.318	60	0	12.78	0.189	0.421	23.99	MQRankSum	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.523677	0.476583	2941	1515	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,.	0.411765,.,.	
-aff_only	fam_pl	C0011K3	chr2:65108615:T:C	1,.,.	7	0.318	22	-1.861	DB	479	9.0714	8.259	-0.4667	7	0.318	60	0	12.78	0.189	0.421	23.99	MQRankSum	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.523677	0.476583	2941	1515	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,.	0.5,.,.	
-aff_only	fam_pl	C0011KA	chr2:65108615:T:C	1,.,1	7	0.318	22	-1.861	DB	479	9.0714	8.259	-0.4667	7	0.318	60	0	12.78	0.189	0.421	23.99	MQRankSum	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.523677	0.476583	2941	1515	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,51	0.454545,.,0.411765	
-aff_only	fam_pl	IP00FNP	chr2:65108615:T:C	1,.,1	7	0.318	22	-1.861	DB	479	9.0714	8.259	-0.4667	7	0.318	60	0	12.78	0.189	0.421	23.99	MQRankSum	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.523677	0.476583	2941	1515	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,31	0.468085,.,0.580645	
-aff_only	fam_pl	IP00FNW	chr2:65108615:T:C	1,.,.	7	0.318	22	-1.861	DB	479	9.0714	8.259	-0.4667	7	0.318	60	0	12.78	0.189	0.421	23.99	MQRankSum	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.523677	0.476583	2941	1515	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			63,.,.	0.52381,.,.	
-aff_only	fam_pl	IP00FNY	chr2:65108615:T:C	1,.,.	7	0.318	22	-1.861	DB	479	9.0714	8.259	-0.4667	7	0.318	60	0	12.78	0.189	0.421	23.99	MQRankSum	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.523677	0.476583	2941	1515	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			75,.,.	0.56,.,.	
-aff_only	fam_pl	C0011JZ	chr2:65109039:A:G	1,.,.	7	0.318	22	-0.843	DB	473	9.0714	2.363	-0.4667	7	0.318	59.96	0	12	0.182	0.638	8.81	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.523857	0.4766	2945	1516	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.488889,.,.	
-aff_only	fam_pl	C0011K2	chr2:65109039:A:G	1,.,.	7	0.318	22	-0.843	DB	473	9.0714	2.363	-0.4667	7	0.318	59.96	0	12	0.182	0.638	8.81	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.523857	0.4766	2945	1516	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.318182,.,.	
-aff_only	fam_pl	C0011K3	chr2:65109039:A:G	1,.,.	7	0.318	22	-0.843	DB	473	9.0714	2.363	-0.4667	7	0.318	59.96	0	12	0.182	0.638	8.81	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.523857	0.4766	2945	1516	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.548387,.,.	
-aff_only	fam_pl	C0011KA	chr2:65109039:A:G	1,.,1	7	0.318	22	-0.843	DB	473	9.0714	2.363	-0.4667	7	0.318	59.96	0	12	0.182	0.638	8.81	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.523857	0.4766	2945	1516	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,44	0.583333,.,0.318182	
-aff_only	fam_pl	IP00FNP	chr2:65109039:A:G	1,.,1	7	0.318	22	-0.843	DB	473	9.0714	2.363	-0.4667	7	0.318	59.96	0	12	0.182	0.638	8.81	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.523857	0.4766	2945	1516	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,45	0.392157,.,0.488889	
-aff_only	fam_pl	IP00FNW	chr2:65109039:A:G	1,.,.	7	0.318	22	-0.843	DB	473	9.0714	2.363	-0.4667	7	0.318	59.96	0	12	0.182	0.638	8.81	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.523857	0.4766	2945	1516	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,.	0.490196,.,.	
-aff_only	fam_pl	IP00FNY	chr2:65109039:A:G	1,.,.	7	0.318	22	-0.843	DB	473	9.0714	2.363	-0.4667	7	0.318	59.96	0	12	0.182	0.638	8.81	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.523857	0.4766	2945	1516	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			70,.,.	0.514286,.,.	
-aff_only	fam_pl	C0011JZ	chr2:65388081:TA:T	1,.,.	7	0.318	22	-0.396	DB	291	9.0714	15.397	-0.6923	9	0.409	59.33	0	19.79	0.534	1.689	6.12	MQRankSum	-|downstream_gene_variant|MODIFIER|SNORA74|ENSG00000272025|Transcript|ENST00000607595|snoRNA|||||||||||2088|1||RFAM||YES||||	-1	0.505715	0.526476	2246	1563	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			20,.,.	0.65,.,.	
-aff_only	fam_pl	C0011K2	chr2:65388081:TA:T	1,.,.	7	0.318	22	-0.396	DB	291	9.0714	15.397	-0.6923	9	0.409	59.33	0	19.79	0.534	1.689	6.12	MQRankSum	-|downstream_gene_variant|MODIFIER|SNORA74|ENSG00000272025|Transcript|ENST00000607595|snoRNA|||||||||||2088|1||RFAM||YES||||	-1	0.505715	0.526476	2246	1563	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			21,.,.	0.428571,.,.	
-aff_only	fam_pl	C0011K3	chr2:65388081:TA:T	1,.,.	7	0.318	22	-0.396	DB	291	9.0714	15.397	-0.6923	9	0.409	59.33	0	19.79	0.534	1.689	6.12	MQRankSum	-|downstream_gene_variant|MODIFIER|SNORA74|ENSG00000272025|Transcript|ENST00000607595|snoRNA|||||||||||2088|1||RFAM||YES||||	-1	0.505715	0.526476	2246	1563	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.535714,.,.	
-aff_only	fam_pl	C0011KA	chr2:65388081:TA:T	1,.,1	7	0.318	22	-0.396	DB	291	9.0714	15.397	-0.6923	9	0.409	59.33	0	19.79	0.534	1.689	6.12	MQRankSum	-|downstream_gene_variant|MODIFIER|SNORA74|ENSG00000272025|Transcript|ENST00000607595|snoRNA|||||||||||2088|1||RFAM||YES||||	-1	0.505715	0.526476	2246	1563	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			13,.,21	0.692308,.,0.428571	
-aff_only	fam_pl	IP00FNP	chr2:65388081:TA:T	1,.,1	7	0.318	22	-0.396	DB	291	9.0714	15.397	-0.6923	9	0.409	59.33	0	19.79	0.534	1.689	6.12	MQRankSum	-|downstream_gene_variant|MODIFIER|SNORA74|ENSG00000272025|Transcript|ENST00000607595|snoRNA|||||||||||2088|1||RFAM||YES||||	-1	0.505715	0.526476	2246	1563	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,20	0.5,.,0.65	
-aff_only	fam_pl	IP00FNW	chr2:65388081:TA:T	1,.,.	7	0.318	22	-0.396	DB	291	9.0714	15.397	-0.6923	9	0.409	59.33	0	19.79	0.534	1.689	6.12	MQRankSum	-|downstream_gene_variant|MODIFIER|SNORA74|ENSG00000272025|Transcript|ENST00000607595|snoRNA|||||||||||2088|1||RFAM||YES||||	-1	0.505715	0.526476	2246	1563	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			17,.,.	0.588235,.,.	
-aff_only	fam_pl	IP00FNY	chr2:65388081:TA:T	1,.,.	7	0.318	22	-0.396	DB	291	9.0714	15.397	-0.6923	9	0.409	59.33	0	19.79	0.534	1.689	6.12	MQRankSum	-|downstream_gene_variant|MODIFIER|SNORA74|ENSG00000272025|Transcript|ENST00000607595|snoRNA|||||||||||2088|1||RFAM||YES||||	-1	0.505715	0.526476	2246	1563	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,.	0.586207,.,.	
-aff_only	fam_pl	C0011JZ	chr2:65525953:A:ATT	1,.,.	7	0.318	22	-0.095	DB	280	4.4261	1.965	-0.2222	7	0.318	56.39	0	15.91	-0.183	1.019	-0.3518	MQRankSum	TT|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.251169	0.27406	427	318	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			6,.,.	1,.,.	
-aff_only	fam_pl	C0011K2	chr2:65525953:A:ATT	1,.,.	7	0.318	22	-0.095	DB	280	4.4261	1.965	-0.2222	7	0.318	56.39	0	15.91	-0.183	1.019	-0.3518	MQRankSum	TT|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.251169	0.27406	427	318	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			10,.,.	0.9,.,.	
-aff_only	fam_pl	C0011K3	chr2:65525953:A:ATT	1,.,.	7	0.318	22	-0.095	DB	280	4.4261	1.965	-0.2222	7	0.318	56.39	0	15.91	-0.183	1.019	-0.3518	MQRankSum	TT|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.251169	0.27406	427	318	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			7,.,.	1,.,.	
-aff_only	fam_pl	C0011KA	chr2:65525953:A:ATT	1,.,1	7	0.318	22	-0.095	DB	280	4.4261	1.965	-0.2222	7	0.318	56.39	0	15.91	-0.183	1.019	-0.3518	MQRankSum	TT|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.251169	0.27406	427	318	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			10,.,10	0.9,.,0.9	
-aff_only	fam_pl	IP00FNP	chr2:65525953:A:ATT	1,.,1	7	0.318	22	-0.095	DB	280	4.4261	1.965	-0.2222	7	0.318	56.39	0	15.91	-0.183	1.019	-0.3518	MQRankSum	TT|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.251169	0.27406	427	318	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			3,.,6	1,.,1	
-aff_only	fam_pl	IP00FNW	chr2:65525953:A:ATT	1,.,.	7	0.318	22	-0.095	DB	280	4.4261	1.965	-0.2222	7	0.318	56.39	0	15.91	-0.183	1.019	-0.3518	MQRankSum	TT|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.251169	0.27406	427	318	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			1,.,.	1,.,.	
-aff_only	fam_pl	IP00FNY	chr2:65525953:A:ATT	1,.,.	7	0.318	22	-0.095	DB	280	4.4261	1.965	-0.2222	7	0.318	56.39	0	15.91	-0.183	1.019	-0.3518	MQRankSum	TT|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.251169	0.27406	427	318	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			11,.,.	0.636364,.,.	
-aff_only	fam_pl	C0011JZ	chr2:67234368:TA:T	1,.,.	7	0.318	22	-0.645	DB	230	9.0714	3.637	-0.5169	7	0.318	60	0	7.84	-0.566	0.397	7.87	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.538314	0.539987	761	470	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			17,.,.	0.647059,.,.	
-aff_only	fam_pl	C0011K2	chr2:67234368:TA:T	1,.,.	7	0.318	22	-0.645	DB	230	9.0714	3.637	-0.5169	7	0.318	60	0	7.84	-0.566	0.397	7.87	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.538314	0.539987	761	470	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			21,.,.	0.619048,.,.	
-aff_only	fam_pl	C0011K3	chr2:67234368:TA:T	1,.,.	7	0.318	22	-0.645	DB	230	9.0714	3.637	-0.5169	7	0.318	60	0	7.84	-0.566	0.397	7.87	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.538314	0.539987	761	470	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			13,.,.	0.384615,.,.	
-aff_only	fam_pl	C0011KA	chr2:67234368:TA:T	1,.,1	7	0.318	22	-0.645	DB	230	9.0714	3.637	-0.5169	7	0.318	60	0	7.84	-0.566	0.397	7.87	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.538314	0.539987	761	470	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			7,.,21	0.285714,.,0.619048	
-aff_only	fam_pl	IP00FNP	chr2:67234368:TA:T	1,.,1	7	0.318	22	-0.645	DB	230	9.0714	3.637	-0.5169	7	0.318	60	0	7.84	-0.566	0.397	7.87	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.538314	0.539987	761	470	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			18,.,17	0.5,.,0.647059	
-aff_only	fam_pl	IP00FNW	chr2:67234368:TA:T	1,.,.	7	0.318	22	-0.645	DB	230	9.0714	3.637	-0.5169	7	0.318	60	0	7.84	-0.566	0.397	7.87	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.538314	0.539987	761	470	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			17,.,.	0.470588,.,.	
-aff_only	fam_pl	IP00FNY	chr2:67234368:TA:T	1,.,.	7	0.318	22	-0.645	DB	230	9.0714	3.637	-0.5169	7	0.318	60	0	7.84	-0.566	0.397	7.87	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.538314	0.539987	761	470	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			22,.,.	0.181818,.,.	
-aff_only	fam_pl	C0011JZ	chr2:69028241:T:TA	1,.,.	7	0.318	22	-0.852	DB	456	9.0714	4.856	-0.4667	7	0.318	60.04	0	12.69	-0.452	0.47	8.44	MQRankSum	A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000295381|protein_coding||4/10|ENST00000295381.3:c.467-6158dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409030|protein_coding||3/9|ENST00000409030.3:c.446-6158dup|||||||||1||HGNC|28951||CCDS46312.1|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409202|protein_coding||4/10|ENST00000409202.3:c.467-6155dup|||||||||1||HGNC|28951|YES|CCDS33214.2|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409220|protein_coding||3/9|ENST00000409220.1:c.446-6155dup|||||||||1||HGNC|28951||CCDS54364.1|||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000456116|processed_transcript||3/4|ENST00000456116.2:n.685-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000463483|nonsense_mediated_decay||5/7|ENST00000463483.1:c.389-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000467265|protein_coding||3/9|ENST00000467265.1:c.350-6158dup|||||||||1||HGNC|28951||CCDS54363.1|||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000473986|nonsense_mediated_decay||4/7|ENST00000473986.1:c.*292-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000485700|processed_transcript||4/4|ENST00000485700.1:n.634-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000488795|nonsense_mediated_decay||2/4|ENST00000488795.1:c.262-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000497079|protein_coding||3/7|ENST00000497079.1:c.446-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000544262|protein_coding||4/6|ENST00000544262.1:c.389-6155dup|||||||||1||HGNC|28951|||||	-1	0.474334	0.504923	2296	1651	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.722222,.,.	
-aff_only	fam_pl	C0011K2	chr2:69028241:T:TA	1,.,.	7	0.318	22	-0.852	DB	456	9.0714	4.856	-0.4667	7	0.318	60.04	0	12.69	-0.452	0.47	8.44	MQRankSum	A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000295381|protein_coding||4/10|ENST00000295381.3:c.467-6158dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409030|protein_coding||3/9|ENST00000409030.3:c.446-6158dup|||||||||1||HGNC|28951||CCDS46312.1|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409202|protein_coding||4/10|ENST00000409202.3:c.467-6155dup|||||||||1||HGNC|28951|YES|CCDS33214.2|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409220|protein_coding||3/9|ENST00000409220.1:c.446-6155dup|||||||||1||HGNC|28951||CCDS54364.1|||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000456116|processed_transcript||3/4|ENST00000456116.2:n.685-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000463483|nonsense_mediated_decay||5/7|ENST00000463483.1:c.389-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000467265|protein_coding||3/9|ENST00000467265.1:c.350-6158dup|||||||||1||HGNC|28951||CCDS54363.1|||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000473986|nonsense_mediated_decay||4/7|ENST00000473986.1:c.*292-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000485700|processed_transcript||4/4|ENST00000485700.1:n.634-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000488795|nonsense_mediated_decay||2/4|ENST00000488795.1:c.262-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000497079|protein_coding||3/7|ENST00000497079.1:c.446-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000544262|protein_coding||4/6|ENST00000544262.1:c.389-6155dup|||||||||1||HGNC|28951|||||	-1	0.474334	0.504923	2296	1651	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.526316,.,.	
-aff_only	fam_pl	C0011K3	chr2:69028241:T:TA	1,.,.	7	0.318	22	-0.852	DB	456	9.0714	4.856	-0.4667	7	0.318	60.04	0	12.69	-0.452	0.47	8.44	MQRankSum	A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000295381|protein_coding||4/10|ENST00000295381.3:c.467-6158dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409030|protein_coding||3/9|ENST00000409030.3:c.446-6158dup|||||||||1||HGNC|28951||CCDS46312.1|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409202|protein_coding||4/10|ENST00000409202.3:c.467-6155dup|||||||||1||HGNC|28951|YES|CCDS33214.2|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409220|protein_coding||3/9|ENST00000409220.1:c.446-6155dup|||||||||1||HGNC|28951||CCDS54364.1|||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000456116|processed_transcript||3/4|ENST00000456116.2:n.685-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000463483|nonsense_mediated_decay||5/7|ENST00000463483.1:c.389-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000467265|protein_coding||3/9|ENST00000467265.1:c.350-6158dup|||||||||1||HGNC|28951||CCDS54363.1|||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000473986|nonsense_mediated_decay||4/7|ENST00000473986.1:c.*292-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000485700|processed_transcript||4/4|ENST00000485700.1:n.634-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000488795|nonsense_mediated_decay||2/4|ENST00000488795.1:c.262-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000497079|protein_coding||3/7|ENST00000497079.1:c.446-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000544262|protein_coding||4/6|ENST00000544262.1:c.389-6155dup|||||||||1||HGNC|28951|||||	-1	0.474334	0.504923	2296	1651	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.545455,.,.	
-aff_only	fam_pl	C0011KA	chr2:69028241:T:TA	1,.,1	7	0.318	22	-0.852	DB	456	9.0714	4.856	-0.4667	7	0.318	60.04	0	12.69	-0.452	0.47	8.44	MQRankSum	A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000295381|protein_coding||4/10|ENST00000295381.3:c.467-6158dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409030|protein_coding||3/9|ENST00000409030.3:c.446-6158dup|||||||||1||HGNC|28951||CCDS46312.1|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409202|protein_coding||4/10|ENST00000409202.3:c.467-6155dup|||||||||1||HGNC|28951|YES|CCDS33214.2|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409220|protein_coding||3/9|ENST00000409220.1:c.446-6155dup|||||||||1||HGNC|28951||CCDS54364.1|||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000456116|processed_transcript||3/4|ENST00000456116.2:n.685-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000463483|nonsense_mediated_decay||5/7|ENST00000463483.1:c.389-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000467265|protein_coding||3/9|ENST00000467265.1:c.350-6158dup|||||||||1||HGNC|28951||CCDS54363.1|||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000473986|nonsense_mediated_decay||4/7|ENST00000473986.1:c.*292-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000485700|processed_transcript||4/4|ENST00000485700.1:n.634-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000488795|nonsense_mediated_decay||2/4|ENST00000488795.1:c.262-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000497079|protein_coding||3/7|ENST00000497079.1:c.446-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000544262|protein_coding||4/6|ENST00000544262.1:c.389-6155dup|||||||||1||HGNC|28951|||||	-1	0.474334	0.504923	2296	1651	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,38	0.423077,.,0.526316	
-aff_only	fam_pl	IP00FNP	chr2:69028241:T:TA	1,.,1	7	0.318	22	-0.852	DB	456	9.0714	4.856	-0.4667	7	0.318	60.04	0	12.69	-0.452	0.47	8.44	MQRankSum	A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000295381|protein_coding||4/10|ENST00000295381.3:c.467-6158dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409030|protein_coding||3/9|ENST00000409030.3:c.446-6158dup|||||||||1||HGNC|28951||CCDS46312.1|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409202|protein_coding||4/10|ENST00000409202.3:c.467-6155dup|||||||||1||HGNC|28951|YES|CCDS33214.2|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409220|protein_coding||3/9|ENST00000409220.1:c.446-6155dup|||||||||1||HGNC|28951||CCDS54364.1|||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000456116|processed_transcript||3/4|ENST00000456116.2:n.685-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000463483|nonsense_mediated_decay||5/7|ENST00000463483.1:c.389-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000467265|protein_coding||3/9|ENST00000467265.1:c.350-6158dup|||||||||1||HGNC|28951||CCDS54363.1|||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000473986|nonsense_mediated_decay||4/7|ENST00000473986.1:c.*292-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000485700|processed_transcript||4/4|ENST00000485700.1:n.634-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000488795|nonsense_mediated_decay||2/4|ENST00000488795.1:c.262-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000497079|protein_coding||3/7|ENST00000497079.1:c.446-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000544262|protein_coding||4/6|ENST00000544262.1:c.389-6155dup|||||||||1||HGNC|28951|||||	-1	0.474334	0.504923	2296	1651	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			49,.,36	0.571429,.,0.722222	
-aff_only	fam_pl	IP00FNW	chr2:69028241:T:TA	1,.,.	7	0.318	22	-0.852	DB	456	9.0714	4.856	-0.4667	7	0.318	60.04	0	12.69	-0.452	0.47	8.44	MQRankSum	A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000295381|protein_coding||4/10|ENST00000295381.3:c.467-6158dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409030|protein_coding||3/9|ENST00000409030.3:c.446-6158dup|||||||||1||HGNC|28951||CCDS46312.1|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409202|protein_coding||4/10|ENST00000409202.3:c.467-6155dup|||||||||1||HGNC|28951|YES|CCDS33214.2|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409220|protein_coding||3/9|ENST00000409220.1:c.446-6155dup|||||||||1||HGNC|28951||CCDS54364.1|||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000456116|processed_transcript||3/4|ENST00000456116.2:n.685-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000463483|nonsense_mediated_decay||5/7|ENST00000463483.1:c.389-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000467265|protein_coding||3/9|ENST00000467265.1:c.350-6158dup|||||||||1||HGNC|28951||CCDS54363.1|||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000473986|nonsense_mediated_decay||4/7|ENST00000473986.1:c.*292-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000485700|processed_transcript||4/4|ENST00000485700.1:n.634-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000488795|nonsense_mediated_decay||2/4|ENST00000488795.1:c.262-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000497079|protein_coding||3/7|ENST00000497079.1:c.446-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000544262|protein_coding||4/6|ENST00000544262.1:c.389-6155dup|||||||||1||HGNC|28951|||||	-1	0.474334	0.504923	2296	1651	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.472222,.,.	
-aff_only	fam_pl	IP00FNY	chr2:69028241:T:TA	1,.,.	7	0.318	22	-0.852	DB	456	9.0714	4.856	-0.4667	7	0.318	60.04	0	12.69	-0.452	0.47	8.44	MQRankSum	A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000295381|protein_coding||4/10|ENST00000295381.3:c.467-6158dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409030|protein_coding||3/9|ENST00000409030.3:c.446-6158dup|||||||||1||HGNC|28951||CCDS46312.1|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409202|protein_coding||4/10|ENST00000409202.3:c.467-6155dup|||||||||1||HGNC|28951|YES|CCDS33214.2|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409220|protein_coding||3/9|ENST00000409220.1:c.446-6155dup|||||||||1||HGNC|28951||CCDS54364.1|||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000456116|processed_transcript||3/4|ENST00000456116.2:n.685-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000463483|nonsense_mediated_decay||5/7|ENST00000463483.1:c.389-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000467265|protein_coding||3/9|ENST00000467265.1:c.350-6158dup|||||||||1||HGNC|28951||CCDS54363.1|||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000473986|nonsense_mediated_decay||4/7|ENST00000473986.1:c.*292-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000485700|processed_transcript||4/4|ENST00000485700.1:n.634-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000488795|nonsense_mediated_decay||2/4|ENST00000488795.1:c.262-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000497079|protein_coding||3/7|ENST00000497079.1:c.446-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000544262|protein_coding||4/6|ENST00000544262.1:c.389-6155dup|||||||||1||HGNC|28951|||||	-1	0.474334	0.504923	2296	1651	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			57,.,.	0.54386,.,.	
-aff_only	fam_pl	C0011JZ	chr2:71706563:G:C	1,.,.	7	0.318	22	-1.192	DB	390	9.0714	8.279	-0.4667	7	0.318	60	0	9.19	-0.344	1	24.29	MQRankSum	C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000258104|protein_coding||1/54|ENST00000258104.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS1918.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000394120|protein_coding||1/54|ENST00000394120.2:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46331.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409366|protein_coding||1/55|ENST00000409366.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46330.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409582|protein_coding||1/55|ENST00000409582.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46324.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409651|protein_coding||1/55|ENST00000409651.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46327.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409744|protein_coding||1/54|ENST00000409744.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46332.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409762|protein_coding||1/54|ENST00000409762.1:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46325.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410020|protein_coding||1/55|ENST00000410020.3:c.92-1450G>C|||||||||1||HGNC|3097|YES|CCDS46328.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410041|protein_coding||1/54|ENST00000410041.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46329.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000413539|protein_coding||1/55|ENST00000413539.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46323.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000429174|protein_coding||1/55|ENST00000429174.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46326.1|||	-1	0.340463	0.411795	1286	1098	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,.	0.461538,.,.	
-aff_only	fam_pl	C0011K2	chr2:71706563:G:C	1,.,.	7	0.318	22	-1.192	DB	390	9.0714	8.279	-0.4667	7	0.318	60	0	9.19	-0.344	1	24.29	MQRankSum	C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000258104|protein_coding||1/54|ENST00000258104.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS1918.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000394120|protein_coding||1/54|ENST00000394120.2:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46331.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409366|protein_coding||1/55|ENST00000409366.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46330.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409582|protein_coding||1/55|ENST00000409582.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46324.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409651|protein_coding||1/55|ENST00000409651.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46327.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409744|protein_coding||1/54|ENST00000409744.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46332.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409762|protein_coding||1/54|ENST00000409762.1:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46325.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410020|protein_coding||1/55|ENST00000410020.3:c.92-1450G>C|||||||||1||HGNC|3097|YES|CCDS46328.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410041|protein_coding||1/54|ENST00000410041.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46329.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000413539|protein_coding||1/55|ENST00000413539.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46323.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000429174|protein_coding||1/55|ENST00000429174.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46326.1|||	-1	0.340463	0.411795	1286	1098	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.387097,.,.	
-aff_only	fam_pl	C0011K3	chr2:71706563:G:C	1,.,.	7	0.318	22	-1.192	DB	390	9.0714	8.279	-0.4667	7	0.318	60	0	9.19	-0.344	1	24.29	MQRankSum	C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000258104|protein_coding||1/54|ENST00000258104.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS1918.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000394120|protein_coding||1/54|ENST00000394120.2:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46331.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409366|protein_coding||1/55|ENST00000409366.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46330.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409582|protein_coding||1/55|ENST00000409582.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46324.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409651|protein_coding||1/55|ENST00000409651.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46327.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409744|protein_coding||1/54|ENST00000409744.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46332.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409762|protein_coding||1/54|ENST00000409762.1:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46325.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410020|protein_coding||1/55|ENST00000410020.3:c.92-1450G>C|||||||||1||HGNC|3097|YES|CCDS46328.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410041|protein_coding||1/54|ENST00000410041.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46329.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000413539|protein_coding||1/55|ENST00000413539.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46323.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000429174|protein_coding||1/55|ENST00000429174.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46326.1|||	-1	0.340463	0.411795	1286	1098	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.368421,.,.	
-aff_only	fam_pl	C0011KA	chr2:71706563:G:C	1,.,1	7	0.318	22	-1.192	DB	390	9.0714	8.279	-0.4667	7	0.318	60	0	9.19	-0.344	1	24.29	MQRankSum	C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000258104|protein_coding||1/54|ENST00000258104.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS1918.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000394120|protein_coding||1/54|ENST00000394120.2:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46331.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409366|protein_coding||1/55|ENST00000409366.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46330.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409582|protein_coding||1/55|ENST00000409582.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46324.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409651|protein_coding||1/55|ENST00000409651.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46327.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409744|protein_coding||1/54|ENST00000409744.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46332.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409762|protein_coding||1/54|ENST00000409762.1:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46325.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410020|protein_coding||1/55|ENST00000410020.3:c.92-1450G>C|||||||||1||HGNC|3097|YES|CCDS46328.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410041|protein_coding||1/54|ENST00000410041.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46329.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000413539|protein_coding||1/55|ENST00000413539.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46323.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000429174|protein_coding||1/55|ENST00000429174.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46326.1|||	-1	0.340463	0.411795	1286	1098	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,31	0.310345,.,0.387097	
-aff_only	fam_pl	IP00FNP	chr2:71706563:G:C	1,.,1	7	0.318	22	-1.192	DB	390	9.0714	8.279	-0.4667	7	0.318	60	0	9.19	-0.344	1	24.29	MQRankSum	C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000258104|protein_coding||1/54|ENST00000258104.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS1918.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000394120|protein_coding||1/54|ENST00000394120.2:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46331.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409366|protein_coding||1/55|ENST00000409366.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46330.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409582|protein_coding||1/55|ENST00000409582.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46324.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409651|protein_coding||1/55|ENST00000409651.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46327.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409744|protein_coding||1/54|ENST00000409744.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46332.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409762|protein_coding||1/54|ENST00000409762.1:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46325.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410020|protein_coding||1/55|ENST00000410020.3:c.92-1450G>C|||||||||1||HGNC|3097|YES|CCDS46328.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410041|protein_coding||1/54|ENST00000410041.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46329.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000413539|protein_coding||1/55|ENST00000413539.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46323.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000429174|protein_coding||1/55|ENST00000429174.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46326.1|||	-1	0.340463	0.411795	1286	1098	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,26	0.454545,.,0.461538	
-aff_only	fam_pl	IP00FNW	chr2:71706563:G:C	1,.,.	7	0.318	22	-1.192	DB	390	9.0714	8.279	-0.4667	7	0.318	60	0	9.19	-0.344	1	24.29	MQRankSum	C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000258104|protein_coding||1/54|ENST00000258104.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS1918.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000394120|protein_coding||1/54|ENST00000394120.2:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46331.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409366|protein_coding||1/55|ENST00000409366.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46330.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409582|protein_coding||1/55|ENST00000409582.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46324.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409651|protein_coding||1/55|ENST00000409651.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46327.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409744|protein_coding||1/54|ENST00000409744.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46332.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409762|protein_coding||1/54|ENST00000409762.1:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46325.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410020|protein_coding||1/55|ENST00000410020.3:c.92-1450G>C|||||||||1||HGNC|3097|YES|CCDS46328.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410041|protein_coding||1/54|ENST00000410041.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46329.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000413539|protein_coding||1/55|ENST00000413539.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46323.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000429174|protein_coding||1/55|ENST00000429174.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46326.1|||	-1	0.340463	0.411795	1286	1098	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.372093,.,.	
-aff_only	fam_pl	IP00FNY	chr2:71706563:G:C	1,.,.	7	0.318	22	-1.192	DB	390	9.0714	8.279	-0.4667	7	0.318	60	0	9.19	-0.344	1	24.29	MQRankSum	C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000258104|protein_coding||1/54|ENST00000258104.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS1918.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000394120|protein_coding||1/54|ENST00000394120.2:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46331.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409366|protein_coding||1/55|ENST00000409366.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46330.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409582|protein_coding||1/55|ENST00000409582.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46324.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409651|protein_coding||1/55|ENST00000409651.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46327.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409744|protein_coding||1/54|ENST00000409744.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46332.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409762|protein_coding||1/54|ENST00000409762.1:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46325.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410020|protein_coding||1/55|ENST00000410020.3:c.92-1450G>C|||||||||1||HGNC|3097|YES|CCDS46328.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410041|protein_coding||1/54|ENST00000410041.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46329.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000413539|protein_coding||1/55|ENST00000413539.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46323.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000429174|protein_coding||1/55|ENST00000429174.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46326.1|||	-1	0.340463	0.411795	1286	1098	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.395349,.,.	
-aff_only	fam_pl	C0011JZ	chr2:114352135:G:A	1,.,.	7	0.318	22	-0.216	DB	554	9.0714	49.345	-0.4741	7	0.318	42.7	-3.311	1.79	-0.866	4.068	-32.31	SOR	A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000326632|transcribed_unprocessed_pseudogene||2/10|ENST00000326632.7:n.205-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000437401|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000453662|transcribed_unprocessed_pseudogene||1/9|ENST00000453662.2:n.155-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000457993|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000535848|unprocessed_pseudogene|||||||||||4471|-1||HGNC|37103|YES||||,A|non_coding_transcript_exon_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000538033|retained_intron|1/7||ENST00000538033.2:n.383G>A||383/2800|||||||1||HGNC|33145|YES||||	-1	0.092277	0.0950659	0	0	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.214286,.,.	
-aff_only	fam_pl	C0011K2	chr2:114352135:G:A	1,.,.	7	0.318	22	-0.216	DB	554	9.0714	49.345	-0.4741	7	0.318	42.7	-3.311	1.79	-0.866	4.068	-32.31	SOR	A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000326632|transcribed_unprocessed_pseudogene||2/10|ENST00000326632.7:n.205-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000437401|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000453662|transcribed_unprocessed_pseudogene||1/9|ENST00000453662.2:n.155-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000457993|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000535848|unprocessed_pseudogene|||||||||||4471|-1||HGNC|37103|YES||||,A|non_coding_transcript_exon_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000538033|retained_intron|1/7||ENST00000538033.2:n.383G>A||383/2800|||||||1||HGNC|33145|YES||||	-1	0.092277	0.0950659	0	0	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			65,.,.	0.215385,.,.	
-aff_only	fam_pl	C0011K3	chr2:114352135:G:A	1,.,.	7	0.318	22	-0.216	DB	554	9.0714	49.345	-0.4741	7	0.318	42.7	-3.311	1.79	-0.866	4.068	-32.31	SOR	A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000326632|transcribed_unprocessed_pseudogene||2/10|ENST00000326632.7:n.205-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000437401|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000453662|transcribed_unprocessed_pseudogene||1/9|ENST00000453662.2:n.155-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000457993|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000535848|unprocessed_pseudogene|||||||||||4471|-1||HGNC|37103|YES||||,A|non_coding_transcript_exon_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000538033|retained_intron|1/7||ENST00000538033.2:n.383G>A||383/2800|||||||1||HGNC|33145|YES||||	-1	0.092277	0.0950659	0	0	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,.	0.14,.,.	
-aff_only	fam_pl	C0011KA	chr2:114352135:G:A	1,.,1	7	0.318	22	-0.216	DB	554	9.0714	49.345	-0.4741	7	0.318	42.7	-3.311	1.79	-0.866	4.068	-32.31	SOR	A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000326632|transcribed_unprocessed_pseudogene||2/10|ENST00000326632.7:n.205-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000437401|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000453662|transcribed_unprocessed_pseudogene||1/9|ENST00000453662.2:n.155-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000457993|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000535848|unprocessed_pseudogene|||||||||||4471|-1||HGNC|37103|YES||||,A|non_coding_transcript_exon_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000538033|retained_intron|1/7||ENST00000538033.2:n.383G>A||383/2800|||||||1||HGNC|33145|YES||||	-1	0.092277	0.0950659	0	0	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			59,.,65	0.20339,.,0.215385	
-aff_only	fam_pl	IP00FNP	chr2:114352135:G:A	1,.,1	7	0.318	22	-0.216	DB	554	9.0714	49.345	-0.4741	7	0.318	42.7	-3.311	1.79	-0.866	4.068	-32.31	SOR	A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000326632|transcribed_unprocessed_pseudogene||2/10|ENST00000326632.7:n.205-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000437401|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000453662|transcribed_unprocessed_pseudogene||1/9|ENST00000453662.2:n.155-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000457993|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000535848|unprocessed_pseudogene|||||||||||4471|-1||HGNC|37103|YES||||,A|non_coding_transcript_exon_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000538033|retained_intron|1/7||ENST00000538033.2:n.383G>A||383/2800|||||||1||HGNC|33145|YES||||	-1	0.092277	0.0950659	0	0	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,42	0.125,.,0.214286	
-aff_only	fam_pl	IP00FNW	chr2:114352135:G:A	1,.,.	7	0.318	22	-0.216	DB	554	9.0714	49.345	-0.4741	7	0.318	42.7	-3.311	1.79	-0.866	4.068	-32.31	SOR	A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000326632|transcribed_unprocessed_pseudogene||2/10|ENST00000326632.7:n.205-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000437401|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000453662|transcribed_unprocessed_pseudogene||1/9|ENST00000453662.2:n.155-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000457993|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000535848|unprocessed_pseudogene|||||||||||4471|-1||HGNC|37103|YES||||,A|non_coding_transcript_exon_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000538033|retained_intron|1/7||ENST00000538033.2:n.383G>A||383/2800|||||||1||HGNC|33145|YES||||	-1	0.092277	0.0950659	0	0	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.170213,.,.	
-aff_only	fam_pl	IP00FNY	chr2:114352135:G:A	1,.,.	7	0.318	22	-0.216	DB	554	9.0714	49.345	-0.4741	7	0.318	42.7	-3.311	1.79	-0.866	4.068	-32.31	SOR	A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000326632|transcribed_unprocessed_pseudogene||2/10|ENST00000326632.7:n.205-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000437401|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000453662|transcribed_unprocessed_pseudogene||1/9|ENST00000453662.2:n.155-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000457993|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000535848|unprocessed_pseudogene|||||||||||4471|-1||HGNC|37103|YES||||,A|non_coding_transcript_exon_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000538033|retained_intron|1/7||ENST00000538033.2:n.383G>A||383/2800|||||||1||HGNC|33145|YES||||	-1	0.092277	0.0950659	0	0	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			60,.,.	0.133333,.,.	
-aff_only	fam_pl	C0011JZ	chr7:628664:A:G	1,.,.	7	0.318	22	-1.067	DB	545	9.0714	0.653	-0.5133	7	0.318	54.65	-4.686	2.21	1.18	0.58	-3.475	MQ	G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000360274|protein_coding||7/10|ENST00000360274.4:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000400758|protein_coding||2/5|ENST00000400758.2:c.291-4459T>C|||||||||-1|cds_start_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000403562|protein_coding||7/10|ENST00000403562.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000406797|protein_coding||7/10|ENST00000406797.1:c.709-4459T>C|||||||||-1||HGNC|9390|YES|CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000430040|protein_coding||7/8|ENST00000430040.1:c.709-4459T>C|||||||||-1|cds_end_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000537384|protein_coding||7/10|ENST00000537384.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000544935|protein_coding||7/10|ENST00000544935.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||	-1	0.185854	0.188696	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			21,.,.	0.0952381,.,.	
-aff_only	fam_pl	C0011K2	chr7:628664:A:G	1,.,.	7	0.318	22	-1.067	DB	545	9.0714	0.653	-0.5133	7	0.318	54.65	-4.686	2.21	1.18	0.58	-3.475	MQ	G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000360274|protein_coding||7/10|ENST00000360274.4:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000400758|protein_coding||2/5|ENST00000400758.2:c.291-4459T>C|||||||||-1|cds_start_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000403562|protein_coding||7/10|ENST00000403562.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000406797|protein_coding||7/10|ENST00000406797.1:c.709-4459T>C|||||||||-1||HGNC|9390|YES|CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000430040|protein_coding||7/8|ENST00000430040.1:c.709-4459T>C|||||||||-1|cds_end_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000537384|protein_coding||7/10|ENST00000537384.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000544935|protein_coding||7/10|ENST00000544935.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||	-1	0.185854	0.188696	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			15,.,.	0.133333,.,.	
-aff_only	fam_pl	C0011K3	chr7:628664:A:G	1,.,.	7	0.318	22	-1.067	DB	545	9.0714	0.653	-0.5133	7	0.318	54.65	-4.686	2.21	1.18	0.58	-3.475	MQ	G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000360274|protein_coding||7/10|ENST00000360274.4:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000400758|protein_coding||2/5|ENST00000400758.2:c.291-4459T>C|||||||||-1|cds_start_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000403562|protein_coding||7/10|ENST00000403562.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000406797|protein_coding||7/10|ENST00000406797.1:c.709-4459T>C|||||||||-1||HGNC|9390|YES|CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000430040|protein_coding||7/8|ENST00000430040.1:c.709-4459T>C|||||||||-1|cds_end_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000537384|protein_coding||7/10|ENST00000537384.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000544935|protein_coding||7/10|ENST00000544935.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||	-1	0.185854	0.188696	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.116279,.,.	
-aff_only	fam_pl	C0011KA	chr7:628664:A:G	1,.,1	7	0.318	22	-1.067	DB	545	9.0714	0.653	-0.5133	7	0.318	54.65	-4.686	2.21	1.18	0.58	-3.475	MQ	G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000360274|protein_coding||7/10|ENST00000360274.4:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000400758|protein_coding||2/5|ENST00000400758.2:c.291-4459T>C|||||||||-1|cds_start_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000403562|protein_coding||7/10|ENST00000403562.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000406797|protein_coding||7/10|ENST00000406797.1:c.709-4459T>C|||||||||-1||HGNC|9390|YES|CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000430040|protein_coding||7/8|ENST00000430040.1:c.709-4459T>C|||||||||-1|cds_end_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000537384|protein_coding||7/10|ENST00000537384.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000544935|protein_coding||7/10|ENST00000544935.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||	-1	0.185854	0.188696	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			12,.,15	0.0833333,.,0.133333	
-aff_only	fam_pl	IP00FNP	chr7:628664:A:G	1,.,1	7	0.318	22	-1.067	DB	545	9.0714	0.653	-0.5133	7	0.318	54.65	-4.686	2.21	1.18	0.58	-3.475	MQ	G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000360274|protein_coding||7/10|ENST00000360274.4:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000400758|protein_coding||2/5|ENST00000400758.2:c.291-4459T>C|||||||||-1|cds_start_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000403562|protein_coding||7/10|ENST00000403562.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000406797|protein_coding||7/10|ENST00000406797.1:c.709-4459T>C|||||||||-1||HGNC|9390|YES|CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000430040|protein_coding||7/8|ENST00000430040.1:c.709-4459T>C|||||||||-1|cds_end_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000537384|protein_coding||7/10|ENST00000537384.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000544935|protein_coding||7/10|ENST00000544935.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||	-1	0.185854	0.188696	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			58,.,21	0.206897,.,0.0952381	
-aff_only	fam_pl	IP00FNW	chr7:628664:A:G	1,.,.	7	0.318	22	-1.067	DB	545	9.0714	0.653	-0.5133	7	0.318	54.65	-4.686	2.21	1.18	0.58	-3.475	MQ	G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000360274|protein_coding||7/10|ENST00000360274.4:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000400758|protein_coding||2/5|ENST00000400758.2:c.291-4459T>C|||||||||-1|cds_start_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000403562|protein_coding||7/10|ENST00000403562.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000406797|protein_coding||7/10|ENST00000406797.1:c.709-4459T>C|||||||||-1||HGNC|9390|YES|CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000430040|protein_coding||7/8|ENST00000430040.1:c.709-4459T>C|||||||||-1|cds_end_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000537384|protein_coding||7/10|ENST00000537384.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000544935|protein_coding||7/10|ENST00000544935.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||	-1	0.185854	0.188696	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,.	0.176471,.,.	
-aff_only	fam_pl	IP00FNY	chr7:628664:A:G	1,.,.	7	0.318	22	-1.067	DB	545	9.0714	0.653	-0.5133	7	0.318	54.65	-4.686	2.21	1.18	0.58	-3.475	MQ	G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000360274|protein_coding||7/10|ENST00000360274.4:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000400758|protein_coding||2/5|ENST00000400758.2:c.291-4459T>C|||||||||-1|cds_start_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000403562|protein_coding||7/10|ENST00000403562.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000406797|protein_coding||7/10|ENST00000406797.1:c.709-4459T>C|||||||||-1||HGNC|9390|YES|CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000430040|protein_coding||7/8|ENST00000430040.1:c.709-4459T>C|||||||||-1|cds_end_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000537384|protein_coding||7/10|ENST00000537384.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000544935|protein_coding||7/10|ENST00000544935.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||	-1	0.185854	0.188696	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			70,.,.	0.142857,.,.	
-aff_only	fam_pl	C0011JZ	chr7:143492092:C:T	1,.,.	7	0.318	22	1.06		299	9.0714	0	-0.5172	7	0.318	39.44	0	5.19	0.319	0.346	-4.537	MQ	T|upstream_gene_variant|MODIFIER|RP11-307I2.1|ENSG00000232145|Transcript|ENST00000421443|processed_pseudogene|||||||||||1296|1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000422705|transcribed_unprocessed_pseudogene||1/5|ENST00000422705.2:n.66+41641G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000427403|transcribed_unprocessed_pseudogene||2/6|ENST00000427403.1:n.692+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000450076|transcribed_unprocessed_pseudogene||2/6|ENST00000450076.1:n.706+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM115D|ENSG00000159860|Transcript|ENST00000456362|unprocessed_pseudogene||1/6|ENST00000456362.1:n.133-14991C>T|||||||||1||HGNC|33603|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000491047|processed_transcript||3/4|ENST00000491047.1:n.304+16549G>A|||||||||-1||Clone_based_vega_gene||||||	-1	0.0307973	0.0267106	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			24,.,.	0.208333,.,.	
-aff_only	fam_pl	C0011K2	chr7:143492092:C:T	1,.,.	7	0.318	22	1.06		299	9.0714	0	-0.5172	7	0.318	39.44	0	5.19	0.319	0.346	-4.537	MQ	T|upstream_gene_variant|MODIFIER|RP11-307I2.1|ENSG00000232145|Transcript|ENST00000421443|processed_pseudogene|||||||||||1296|1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000422705|transcribed_unprocessed_pseudogene||1/5|ENST00000422705.2:n.66+41641G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000427403|transcribed_unprocessed_pseudogene||2/6|ENST00000427403.1:n.692+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000450076|transcribed_unprocessed_pseudogene||2/6|ENST00000450076.1:n.706+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM115D|ENSG00000159860|Transcript|ENST00000456362|unprocessed_pseudogene||1/6|ENST00000456362.1:n.133-14991C>T|||||||||1||HGNC|33603|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000491047|processed_transcript||3/4|ENST00000491047.1:n.304+16549G>A|||||||||-1||Clone_based_vega_gene||||||	-1	0.0307973	0.0267106	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.171429,.,.	
-aff_only	fam_pl	C0011K3	chr7:143492092:C:T	1,.,.	7	0.318	22	1.06		299	9.0714	0	-0.5172	7	0.318	39.44	0	5.19	0.319	0.346	-4.537	MQ	T|upstream_gene_variant|MODIFIER|RP11-307I2.1|ENSG00000232145|Transcript|ENST00000421443|processed_pseudogene|||||||||||1296|1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000422705|transcribed_unprocessed_pseudogene||1/5|ENST00000422705.2:n.66+41641G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000427403|transcribed_unprocessed_pseudogene||2/6|ENST00000427403.1:n.692+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000450076|transcribed_unprocessed_pseudogene||2/6|ENST00000450076.1:n.706+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM115D|ENSG00000159860|Transcript|ENST00000456362|unprocessed_pseudogene||1/6|ENST00000456362.1:n.133-14991C>T|||||||||1||HGNC|33603|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000491047|processed_transcript||3/4|ENST00000491047.1:n.304+16549G>A|||||||||-1||Clone_based_vega_gene||||||	-1	0.0307973	0.0267106	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,.	0.2,.,.	
-aff_only	fam_pl	C0011KA	chr7:143492092:C:T	1,.,1	7	0.318	22	1.06		299	9.0714	0	-0.5172	7	0.318	39.44	0	5.19	0.319	0.346	-4.537	MQ	T|upstream_gene_variant|MODIFIER|RP11-307I2.1|ENSG00000232145|Transcript|ENST00000421443|processed_pseudogene|||||||||||1296|1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000422705|transcribed_unprocessed_pseudogene||1/5|ENST00000422705.2:n.66+41641G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000427403|transcribed_unprocessed_pseudogene||2/6|ENST00000427403.1:n.692+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000450076|transcribed_unprocessed_pseudogene||2/6|ENST00000450076.1:n.706+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM115D|ENSG00000159860|Transcript|ENST00000456362|unprocessed_pseudogene||1/6|ENST00000456362.1:n.133-14991C>T|||||||||1||HGNC|33603|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000491047|processed_transcript||3/4|ENST00000491047.1:n.304+16549G>A|||||||||-1||Clone_based_vega_gene||||||	-1	0.0307973	0.0267106	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			18,.,35	0.222222,.,0.171429	
-aff_only	fam_pl	IP00FNP	chr7:143492092:C:T	1,.,1	7	0.318	22	1.06		299	9.0714	0	-0.5172	7	0.318	39.44	0	5.19	0.319	0.346	-4.537	MQ	T|upstream_gene_variant|MODIFIER|RP11-307I2.1|ENSG00000232145|Transcript|ENST00000421443|processed_pseudogene|||||||||||1296|1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000422705|transcribed_unprocessed_pseudogene||1/5|ENST00000422705.2:n.66+41641G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000427403|transcribed_unprocessed_pseudogene||2/6|ENST00000427403.1:n.692+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000450076|transcribed_unprocessed_pseudogene||2/6|ENST00000450076.1:n.706+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM115D|ENSG00000159860|Transcript|ENST00000456362|unprocessed_pseudogene||1/6|ENST00000456362.1:n.133-14991C>T|||||||||1||HGNC|33603|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000491047|processed_transcript||3/4|ENST00000491047.1:n.304+16549G>A|||||||||-1||Clone_based_vega_gene||||||	-1	0.0307973	0.0267106	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,24	0.482759,.,0.208333	
-aff_only	fam_pl	IP00FNW	chr7:143492092:C:T	1,.,.	7	0.318	22	1.06		299	9.0714	0	-0.5172	7	0.318	39.44	0	5.19	0.319	0.346	-4.537	MQ	T|upstream_gene_variant|MODIFIER|RP11-307I2.1|ENSG00000232145|Transcript|ENST00000421443|processed_pseudogene|||||||||||1296|1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000422705|transcribed_unprocessed_pseudogene||1/5|ENST00000422705.2:n.66+41641G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000427403|transcribed_unprocessed_pseudogene||2/6|ENST00000427403.1:n.692+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000450076|transcribed_unprocessed_pseudogene||2/6|ENST00000450076.1:n.706+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM115D|ENSG00000159860|Transcript|ENST00000456362|unprocessed_pseudogene||1/6|ENST00000456362.1:n.133-14991C>T|||||||||1||HGNC|33603|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000491047|processed_transcript||3/4|ENST00000491047.1:n.304+16549G>A|||||||||-1||Clone_based_vega_gene||||||	-1	0.0307973	0.0267106	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			24,.,.	0.166667,.,.	
-aff_only	fam_pl	IP00FNY	chr7:143492092:C:T	1,.,.	7	0.318	22	1.06		299	9.0714	0	-0.5172	7	0.318	39.44	0	5.19	0.319	0.346	-4.537	MQ	T|upstream_gene_variant|MODIFIER|RP11-307I2.1|ENSG00000232145|Transcript|ENST00000421443|processed_pseudogene|||||||||||1296|1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000422705|transcribed_unprocessed_pseudogene||1/5|ENST00000422705.2:n.66+41641G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000427403|transcribed_unprocessed_pseudogene||2/6|ENST00000427403.1:n.692+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000450076|transcribed_unprocessed_pseudogene||2/6|ENST00000450076.1:n.706+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM115D|ENSG00000159860|Transcript|ENST00000456362|unprocessed_pseudogene||1/6|ENST00000456362.1:n.133-14991C>T|||||||||1||HGNC|33603|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000491047|processed_transcript||3/4|ENST00000491047.1:n.304+16549G>A|||||||||-1||Clone_based_vega_gene||||||	-1	0.0307973	0.0267106	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.214286,.,.	
-aff_only	fam_pl	C0011JZ	chr7:143897347:A:G	1,.,.	7	0.318	22	0	DB	309	9.0714	85.285	-0.5174	7	0.318	33.37	1.79	4.24	-0.238	6.827	-97.48	SOR	G|upstream_gene_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000378115|protein_coding|||||||||||4599|-1||HGNC|33846|YES|CCDS34770.1|||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.381+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense|2/6||ENST00000464929.1:n.432A>G||432/819|||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense|2/4||ENST00000474656.1:n.428A>G||428/773|||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.170+4197A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.183+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense|2/5||ENST00000498693.1:n.366A>G||366/856|||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-11859T>C|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.26168	0.250156	55	37	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.16129,.,.	
-aff_only	fam_pl	C0011K2	chr7:143897347:A:G	1,.,.	7	0.318	22	0	DB	309	9.0714	85.285	-0.5174	7	0.318	33.37	1.79	4.24	-0.238	6.827	-97.48	SOR	G|upstream_gene_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000378115|protein_coding|||||||||||4599|-1||HGNC|33846|YES|CCDS34770.1|||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.381+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense|2/6||ENST00000464929.1:n.432A>G||432/819|||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense|2/4||ENST00000474656.1:n.428A>G||428/773|||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.170+4197A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.183+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense|2/5||ENST00000498693.1:n.366A>G||366/856|||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-11859T>C|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.26168	0.250156	55	37	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.214286,.,.	
-aff_only	fam_pl	C0011K3	chr7:143897347:A:G	1,.,.	7	0.318	22	0	DB	309	9.0714	85.285	-0.5174	7	0.318	33.37	1.79	4.24	-0.238	6.827	-97.48	SOR	G|upstream_gene_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000378115|protein_coding|||||||||||4599|-1||HGNC|33846|YES|CCDS34770.1|||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.381+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense|2/6||ENST00000464929.1:n.432A>G||432/819|||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense|2/4||ENST00000474656.1:n.428A>G||428/773|||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.170+4197A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.183+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense|2/5||ENST00000498693.1:n.366A>G||366/856|||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-11859T>C|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.26168	0.250156	55	37	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			27,.,.	0.222222,.,.	
-aff_only	fam_pl	C0011KA	chr7:143897347:A:G	1,.,1	7	0.318	22	0	DB	309	9.0714	85.285	-0.5174	7	0.318	33.37	1.79	4.24	-0.238	6.827	-97.48	SOR	G|upstream_gene_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000378115|protein_coding|||||||||||4599|-1||HGNC|33846|YES|CCDS34770.1|||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.381+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense|2/6||ENST00000464929.1:n.432A>G||432/819|||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense|2/4||ENST00000474656.1:n.428A>G||428/773|||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.170+4197A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.183+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense|2/5||ENST00000498693.1:n.366A>G||366/856|||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-11859T>C|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.26168	0.250156	55	37	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,28	0.310345,.,0.214286	
-aff_only	fam_pl	IP00FNP	chr7:143897347:A:G	1,.,1	7	0.318	22	0	DB	309	9.0714	85.285	-0.5174	7	0.318	33.37	1.79	4.24	-0.238	6.827	-97.48	SOR	G|upstream_gene_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000378115|protein_coding|||||||||||4599|-1||HGNC|33846|YES|CCDS34770.1|||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.381+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense|2/6||ENST00000464929.1:n.432A>G||432/819|||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense|2/4||ENST00000474656.1:n.428A>G||428/773|||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.170+4197A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.183+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense|2/5||ENST00000498693.1:n.366A>G||366/856|||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-11859T>C|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.26168	0.250156	55	37	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,31	0.189189,.,0.16129	
-aff_only	fam_pl	IP00FNW	chr7:143897347:A:G	1,.,.	7	0.318	22	0	DB	309	9.0714	85.285	-0.5174	7	0.318	33.37	1.79	4.24	-0.238	6.827	-97.48	SOR	G|upstream_gene_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000378115|protein_coding|||||||||||4599|-1||HGNC|33846|YES|CCDS34770.1|||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.381+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense|2/6||ENST00000464929.1:n.432A>G||432/819|||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense|2/4||ENST00000474656.1:n.428A>G||428/773|||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.170+4197A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.183+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense|2/5||ENST00000498693.1:n.366A>G||366/856|||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-11859T>C|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.26168	0.250156	55	37	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,.	0.166667,.,.	
-aff_only	fam_pl	IP00FNY	chr7:143897347:A:G	1,.,.	7	0.318	22	0	DB	309	9.0714	85.285	-0.5174	7	0.318	33.37	1.79	4.24	-0.238	6.827	-97.48	SOR	G|upstream_gene_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000378115|protein_coding|||||||||||4599|-1||HGNC|33846|YES|CCDS34770.1|||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.381+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense|2/6||ENST00000464929.1:n.432A>G||432/819|||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense|2/4||ENST00000474656.1:n.428A>G||428/773|||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.170+4197A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.183+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense|2/5||ENST00000498693.1:n.366A>G||366/856|||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-11859T>C|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.26168	0.250156	55	37	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.244444,.,.	
-aff_only	fam_pl	C0011JZ	chr7:143901937:C:T	1,.,.	7	0.318	22	-0.501		670	9.0714	4.325	-0.5172	7	0.318	27.51	0.158	3.03	0.108	0.991	-10.21	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2846|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2848|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2849C>T|||||||||1||Clone_based_vega_gene||YES||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16449G>A|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.134101	0.103901	9	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			63,.,.	0.190476,.,.	
-aff_only	fam_pl	C0011K2	chr7:143901937:C:T	1,.,.	7	0.318	22	-0.501		670	9.0714	4.325	-0.5172	7	0.318	27.51	0.158	3.03	0.108	0.991	-10.21	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2846|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2848|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2849C>T|||||||||1||Clone_based_vega_gene||YES||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16449G>A|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.134101	0.103901	9	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			85,.,.	0.164706,.,.	
-aff_only	fam_pl	C0011K3	chr7:143901937:C:T	1,.,.	7	0.318	22	-0.501		670	9.0714	4.325	-0.5172	7	0.318	27.51	0.158	3.03	0.108	0.991	-10.21	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2846|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2848|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2849C>T|||||||||1||Clone_based_vega_gene||YES||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16449G>A|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.134101	0.103901	9	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			98,.,.	0.122449,.,.	
-aff_only	fam_pl	C0011KA	chr7:143901937:C:T	1,.,1	7	0.318	22	-0.501		670	9.0714	4.325	-0.5172	7	0.318	27.51	0.158	3.03	0.108	0.991	-10.21	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2846|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2848|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2849C>T|||||||||1||Clone_based_vega_gene||YES||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16449G>A|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.134101	0.103901	9	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,85	0.291667,.,0.164706	
-aff_only	fam_pl	IP00FNP	chr7:143901937:C:T	1,.,1	7	0.318	22	-0.501		670	9.0714	4.325	-0.5172	7	0.318	27.51	0.158	3.03	0.108	0.991	-10.21	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2846|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2848|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2849C>T|||||||||1||Clone_based_vega_gene||YES||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16449G>A|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.134101	0.103901	9	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			55,.,63	0.145455,.,0.190476	
-aff_only	fam_pl	IP00FNW	chr7:143901937:C:T	1,.,.	7	0.318	22	-0.501		670	9.0714	4.325	-0.5172	7	0.318	27.51	0.158	3.03	0.108	0.991	-10.21	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2846|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2848|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2849C>T|||||||||1||Clone_based_vega_gene||YES||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16449G>A|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.134101	0.103901	9	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,.	0.196078,.,.	
-aff_only	fam_pl	IP00FNY	chr7:143901937:C:T	1,.,.	7	0.318	22	-0.501		670	9.0714	4.325	-0.5172	7	0.318	27.51	0.158	3.03	0.108	0.991	-10.21	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2846|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2848|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2849C>T|||||||||1||Clone_based_vega_gene||YES||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16449G>A|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.134101	0.103901	9	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			61,.,.	0.344262,.,.	
-aff_only	fam_pl	C0011JZ	chr7:143901963:G:A	1,.,.	7	0.318	22	1.5	DB	878	9.0714	1.528	-0.4643	7	0.318	27.67	0.017	2.73	0.773	0.67	-10.09	MQ	A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2820|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2822|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2823G>A|||||||||1||Clone_based_vega_gene||YES||||,A|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16475C>T|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.182612	0.148653	11	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			80,.,.	0.175,.,.	
-aff_only	fam_pl	C0011K2	chr7:143901963:G:A	1,.,.	7	0.318	22	1.5	DB	878	9.0714	1.528	-0.4643	7	0.318	27.67	0.017	2.73	0.773	0.67	-10.09	MQ	A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2820|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2822|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2823G>A|||||||||1||Clone_based_vega_gene||YES||||,A|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16475C>T|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.182612	0.148653	11	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			101,.,.	0.148515,.,.	
-aff_only	fam_pl	C0011K3	chr7:143901963:G:A	1,.,.	7	0.318	22	1.5	DB	878	9.0714	1.528	-0.4643	7	0.318	27.67	0.017	2.73	0.773	0.67	-10.09	MQ	A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2820|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2822|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2823G>A|||||||||1||Clone_based_vega_gene||YES||||,A|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16475C>T|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.182612	0.148653	11	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			116,.,.	0.103448,.,.	
-aff_only	fam_pl	C0011KA	chr7:143901963:G:A	1,.,1	7	0.318	22	1.5	DB	878	9.0714	1.528	-0.4643	7	0.318	27.67	0.017	2.73	0.773	0.67	-10.09	MQ	A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2820|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2822|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2823G>A|||||||||1||Clone_based_vega_gene||YES||||,A|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16475C>T|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.182612	0.148653	11	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			62,.,101	0.306452,.,0.148515	
-aff_only	fam_pl	IP00FNP	chr7:143901963:G:A	1,.,1	7	0.318	22	1.5	DB	878	9.0714	1.528	-0.4643	7	0.318	27.67	0.017	2.73	0.773	0.67	-10.09	MQ	A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2820|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2822|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2823G>A|||||||||1||Clone_based_vega_gene||YES||||,A|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16475C>T|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.182612	0.148653	11	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			86,.,80	0.139535,.,0.175	
-aff_only	fam_pl	IP00FNW	chr7:143901963:G:A	1,.,.	7	0.318	22	1.5	DB	878	9.0714	1.528	-0.4643	7	0.318	27.67	0.017	2.73	0.773	0.67	-10.09	MQ	A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2820|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2822|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2823G>A|||||||||1||Clone_based_vega_gene||YES||||,A|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16475C>T|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.182612	0.148653	11	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			91,.,.	0.131868,.,.	
-aff_only	fam_pl	IP00FNY	chr7:143901963:G:A	1,.,.	7	0.318	22	1.5	DB	878	9.0714	1.528	-0.4643	7	0.318	27.67	0.017	2.73	0.773	0.67	-10.09	MQ	A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2820|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2822|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2823G>A|||||||||1||Clone_based_vega_gene||YES||||,A|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16475C>T|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.182612	0.148653	11	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			110,.,.	0.345455,.,.	
-aff_only	fam_pl	C0011JZ	chr7:143904241:A:G	1,.,.	7	0.318	22	0.018	DB	701	9.0714	11.359	-0.5172	7	0.318	32.63	-0.299	3.25	-1.483	1.497	-9.891	MQ	G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||542|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||544|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-545A>G|||||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-18753T>C|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.274984	0.262682	1	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			69,.,.	0.231884,.,.	
-aff_only	fam_pl	C0011K2	chr7:143904241:A:G	1,.,.	7	0.318	22	0.018	DB	701	9.0714	11.359	-0.5172	7	0.318	32.63	-0.299	3.25	-1.483	1.497	-9.891	MQ	G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||542|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||544|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-545A>G|||||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-18753T>C|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.274984	0.262682	1	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			57,.,.	0.140351,.,.	
-aff_only	fam_pl	C0011K3	chr7:143904241:A:G	1,.,.	7	0.318	22	0.018	DB	701	9.0714	11.359	-0.5172	7	0.318	32.63	-0.299	3.25	-1.483	1.497	-9.891	MQ	G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||542|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||544|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-545A>G|||||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-18753T>C|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.274984	0.262682	1	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			84,.,.	0.178571,.,.	
-aff_only	fam_pl	C0011KA	chr7:143904241:A:G	1,.,1	7	0.318	22	0.018	DB	701	9.0714	11.359	-0.5172	7	0.318	32.63	-0.299	3.25	-1.483	1.497	-9.891	MQ	G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||542|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||544|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-545A>G|||||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-18753T>C|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.274984	0.262682	1	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,57	0.357143,.,0.140351	
-aff_only	fam_pl	IP00FNP	chr7:143904241:A:G	1,.,1	7	0.318	22	0.018	DB	701	9.0714	11.359	-0.5172	7	0.318	32.63	-0.299	3.25	-1.483	1.497	-9.891	MQ	G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||542|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||544|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-545A>G|||||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-18753T>C|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.274984	0.262682	1	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			95,.,69	0.221053,.,0.231884	
-aff_only	fam_pl	IP00FNW	chr7:143904241:A:G	1,.,.	7	0.318	22	0.018	DB	701	9.0714	11.359	-0.5172	7	0.318	32.63	-0.299	3.25	-1.483	1.497	-9.891	MQ	G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||542|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||544|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-545A>G|||||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-18753T>C|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.274984	0.262682	1	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			74,.,.	0.216216,.,.	
-aff_only	fam_pl	IP00FNY	chr7:143904241:A:G	1,.,.	7	0.318	22	0.018	DB	701	9.0714	11.359	-0.5172	7	0.318	32.63	-0.299	3.25	-1.483	1.497	-9.891	MQ	G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||542|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||544|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-545A>G|||||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-18753T>C|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.274984	0.262682	1	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			100,.,.	0.13,.,.	
-aff_only	fam_pl	C0011JZ	chr7:143989050:C:T	1,.,.	7	0.318	22	0	DB	282	9.0714	7.071	-0.4667	7	0.318	26.71	0	4.95	-0.532	0.952	-10.45	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2161G>A|||||||||-1||HGNC|38086|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40347G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19634G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40347G>A|||||||||-1||HGNC|49168|||||,T|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2523|1||HGNC|8236|||||,T|upstream_gene_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000483587|unprocessed_pseudogene|||||||||||4991|-1||HGNC|38086|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39465G>A|||||||||-1||HGNC|49168|||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2161G>A|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.300719	0.280411	8	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,.	0.192308,.,.	
-aff_only	fam_pl	C0011K2	chr7:143989050:C:T	1,.,.	7	0.318	22	0	DB	282	9.0714	7.071	-0.4667	7	0.318	26.71	0	4.95	-0.532	0.952	-10.45	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2161G>A|||||||||-1||HGNC|38086|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40347G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19634G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40347G>A|||||||||-1||HGNC|49168|||||,T|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2523|1||HGNC|8236|||||,T|upstream_gene_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000483587|unprocessed_pseudogene|||||||||||4991|-1||HGNC|38086|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39465G>A|||||||||-1||HGNC|49168|||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2161G>A|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.300719	0.280411	8	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			14,.,.	0.214286,.,.	
-aff_only	fam_pl	C0011K3	chr7:143989050:C:T	1,.,.	7	0.318	22	0	DB	282	9.0714	7.071	-0.4667	7	0.318	26.71	0	4.95	-0.532	0.952	-10.45	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2161G>A|||||||||-1||HGNC|38086|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40347G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19634G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40347G>A|||||||||-1||HGNC|49168|||||,T|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2523|1||HGNC|8236|||||,T|upstream_gene_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000483587|unprocessed_pseudogene|||||||||||4991|-1||HGNC|38086|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39465G>A|||||||||-1||HGNC|49168|||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2161G>A|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.300719	0.280411	8	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,.	0.310345,.,.	
-aff_only	fam_pl	C0011KA	chr7:143989050:C:T	1,.,1	7	0.318	22	0	DB	282	9.0714	7.071	-0.4667	7	0.318	26.71	0	4.95	-0.532	0.952	-10.45	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2161G>A|||||||||-1||HGNC|38086|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40347G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19634G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40347G>A|||||||||-1||HGNC|49168|||||,T|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2523|1||HGNC|8236|||||,T|upstream_gene_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000483587|unprocessed_pseudogene|||||||||||4991|-1||HGNC|38086|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39465G>A|||||||||-1||HGNC|49168|||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2161G>A|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.300719	0.280411	8	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			16,.,14	0.4375,.,0.214286	
-aff_only	fam_pl	IP00FNP	chr7:143989050:C:T	1,.,1	7	0.318	22	0	DB	282	9.0714	7.071	-0.4667	7	0.318	26.71	0	4.95	-0.532	0.952	-10.45	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2161G>A|||||||||-1||HGNC|38086|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40347G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19634G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40347G>A|||||||||-1||HGNC|49168|||||,T|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2523|1||HGNC|8236|||||,T|upstream_gene_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000483587|unprocessed_pseudogene|||||||||||4991|-1||HGNC|38086|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39465G>A|||||||||-1||HGNC|49168|||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2161G>A|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.300719	0.280411	8	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,26	0.266667,.,0.192308	
-aff_only	fam_pl	IP00FNW	chr7:143989050:C:T	1,.,.	7	0.318	22	0	DB	282	9.0714	7.071	-0.4667	7	0.318	26.71	0	4.95	-0.532	0.952	-10.45	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2161G>A|||||||||-1||HGNC|38086|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40347G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19634G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40347G>A|||||||||-1||HGNC|49168|||||,T|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2523|1||HGNC|8236|||||,T|upstream_gene_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000483587|unprocessed_pseudogene|||||||||||4991|-1||HGNC|38086|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39465G>A|||||||||-1||HGNC|49168|||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2161G>A|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.300719	0.280411	8	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.285714,.,.	
-aff_only	fam_pl	IP00FNY	chr7:143989050:C:T	1,.,.	7	0.318	22	0	DB	282	9.0714	7.071	-0.4667	7	0.318	26.71	0	4.95	-0.532	0.952	-10.45	MQ	T|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2161G>A|||||||||-1||HGNC|38086|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40347G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19634G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40347G>A|||||||||-1||HGNC|49168|||||,T|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2523|1||HGNC|8236|||||,T|upstream_gene_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000483587|unprocessed_pseudogene|||||||||||4991|-1||HGNC|38086|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39465G>A|||||||||-1||HGNC|49168|||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2161G>A|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.300719	0.280411	8	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.243902,.,.	
-aff_only	fam_pl	C0011JZ	chr7:143989124:T:C	1,.,.	7	0.318	22	-2.573	DB	437	9.0714	13.386	-0.5172	7	0.318	25.57	0	5.87	-0.174	1.348	-14	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2087A>G|||||||||-1||HGNC|38086|YES||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40421A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19560A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40421A>G|||||||||-1||HGNC|49168|||||,C|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2449|1||HGNC|8236|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39539A>G|||||||||-1||HGNC|49168|||||,C|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2087A>G|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.31982	0.305004	4	4	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.333333,.,.	
-aff_only	fam_pl	C0011K2	chr7:143989124:T:C	1,.,.	7	0.318	22	-2.573	DB	437	9.0714	13.386	-0.5172	7	0.318	25.57	0	5.87	-0.174	1.348	-14	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2087A>G|||||||||-1||HGNC|38086|YES||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40421A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19560A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40421A>G|||||||||-1||HGNC|49168|||||,C|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2449|1||HGNC|8236|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39539A>G|||||||||-1||HGNC|49168|||||,C|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2087A>G|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.31982	0.305004	4	4	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.230769,.,.	
-aff_only	fam_pl	C0011K3	chr7:143989124:T:C	1,.,.	7	0.318	22	-2.573	DB	437	9.0714	13.386	-0.5172	7	0.318	25.57	0	5.87	-0.174	1.348	-14	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2087A>G|||||||||-1||HGNC|38086|YES||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40421A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19560A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40421A>G|||||||||-1||HGNC|49168|||||,C|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2449|1||HGNC|8236|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39539A>G|||||||||-1||HGNC|49168|||||,C|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2087A>G|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.31982	0.305004	4	4	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,.	0.291667,.,.	
-aff_only	fam_pl	C0011KA	chr7:143989124:T:C	1,.,1	7	0.318	22	-2.573	DB	437	9.0714	13.386	-0.5172	7	0.318	25.57	0	5.87	-0.174	1.348	-14	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2087A>G|||||||||-1||HGNC|38086|YES||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40421A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19560A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40421A>G|||||||||-1||HGNC|49168|||||,C|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2449|1||HGNC|8236|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39539A>G|||||||||-1||HGNC|49168|||||,C|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2087A>G|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.31982	0.305004	4	4	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,39	0.461538,.,0.230769	
-aff_only	fam_pl	IP00FNP	chr7:143989124:T:C	1,.,1	7	0.318	22	-2.573	DB	437	9.0714	13.386	-0.5172	7	0.318	25.57	0	5.87	-0.174	1.348	-14	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2087A>G|||||||||-1||HGNC|38086|YES||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40421A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19560A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40421A>G|||||||||-1||HGNC|49168|||||,C|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2449|1||HGNC|8236|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39539A>G|||||||||-1||HGNC|49168|||||,C|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2087A>G|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.31982	0.305004	4	4	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,33	0.294118,.,0.333333	
-aff_only	fam_pl	IP00FNW	chr7:143989124:T:C	1,.,.	7	0.318	22	-2.573	DB	437	9.0714	13.386	-0.5172	7	0.318	25.57	0	5.87	-0.174	1.348	-14	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2087A>G|||||||||-1||HGNC|38086|YES||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40421A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19560A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40421A>G|||||||||-1||HGNC|49168|||||,C|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2449|1||HGNC|8236|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39539A>G|||||||||-1||HGNC|49168|||||,C|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2087A>G|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.31982	0.305004	4	4	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			54,.,.	0.277778,.,.	
-aff_only	fam_pl	IP00FNY	chr7:143989124:T:C	1,.,.	7	0.318	22	-2.573	DB	437	9.0714	13.386	-0.5172	7	0.318	25.57	0	5.87	-0.174	1.348	-14	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2087A>G|||||||||-1||HGNC|38086|YES||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40421A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19560A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40421A>G|||||||||-1||HGNC|49168|||||,C|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2449|1||HGNC|8236|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39539A>G|||||||||-1||HGNC|49168|||||,C|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2087A>G|||||||||-1||HGNC|33846||CCDS34770.1|||	-1	0.31982	0.305004	4	4	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,.	0.372549,.,.	
-aff_only	fam_pl	C0011JZ	chr7:144659042:TATACAC:T	1,.,.	7	0.318	22	0	DB	313	9.0714	6.166	-0.5298	7	0.318	60.14	0	7.61	0.794	0.752	7.17	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0591229	0.0532034	13	5	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			21,.,.	0.333333,.,.	
-aff_only	fam_pl	C0011K2	chr7:144659042:TATACAC:T	1,.,.	7	0.318	22	0	DB	313	9.0714	6.166	-0.5298	7	0.318	60.14	0	7.61	0.794	0.752	7.17	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0591229	0.0532034	13	5	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			18,.,.	0.222222,.,.	
-aff_only	fam_pl	C0011K3	chr7:144659042:TATACAC:T	1,.,.	7	0.318	22	0	DB	313	9.0714	6.166	-0.5298	7	0.318	60.14	0	7.61	0.794	0.752	7.17	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0591229	0.0532034	13	5	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			24,.,.	0.375,.,.	
-aff_only	fam_pl	C0011KA	chr7:144659042:TATACAC:T	1,.,1	7	0.318	22	0	DB	313	9.0714	6.166	-0.5298	7	0.318	60.14	0	7.61	0.794	0.752	7.17	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0591229	0.0532034	13	5	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			19,.,18	0.631579,.,0.222222	
-aff_only	fam_pl	IP00FNP	chr7:144659042:TATACAC:T	1,.,1	7	0.318	22	0	DB	313	9.0714	6.166	-0.5298	7	0.318	60.14	0	7.61	0.794	0.752	7.17	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0591229	0.0532034	13	5	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			11,.,21	0.181818,.,0.333333	
-aff_only	fam_pl	IP00FNW	chr7:144659042:TATACAC:T	1,.,.	7	0.318	22	0	DB	313	9.0714	6.166	-0.5298	7	0.318	60.14	0	7.61	0.794	0.752	7.17	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0591229	0.0532034	13	5	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			11,.,.	0.545455,.,.	
-aff_only	fam_pl	IP00FNY	chr7:144659042:TATACAC:T	1,.,.	7	0.318	22	0	DB	313	9.0714	6.166	-0.5298	7	0.318	60.14	0	7.61	0.794	0.752	7.17	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0591229	0.0532034	13	5	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			27,.,.	0.222222,.,.	
-aff_only	fam_pl	C0011JZ	chr7:146603134:G:A	1,.,.	7	0.318	22	0.052	DB	478	9.0714	5.008	-0.4667	7	0.318	53.32	0.189	15.41	0.593	0.489	-1.811	MQ	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.402+66138G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0395233	0.0491249	12	10	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,.	0.6,.,.	
-aff_only	fam_pl	C0011K2	chr7:146603134:G:A	1,.,.	7	0.318	22	0.052	DB	478	9.0714	5.008	-0.4667	7	0.318	53.32	0.189	15.41	0.593	0.489	-1.811	MQ	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.402+66138G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0395233	0.0491249	12	10	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.446809,.,.	
-aff_only	fam_pl	C0011K3	chr7:146603134:G:A	1,.,.	7	0.318	22	0.052	DB	478	9.0714	5.008	-0.4667	7	0.318	53.32	0.189	15.41	0.593	0.489	-1.811	MQ	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.402+66138G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0395233	0.0491249	12	10	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			56,.,.	0.660714,.,.	
-aff_only	fam_pl	C0011KA	chr7:146603134:G:A	1,.,1	7	0.318	22	0.052	DB	478	9.0714	5.008	-0.4667	7	0.318	53.32	0.189	15.41	0.593	0.489	-1.811	MQ	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.402+66138G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0395233	0.0491249	12	10	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,47	0.452381,.,0.446809	
-aff_only	fam_pl	IP00FNP	chr7:146603134:G:A	1,.,1	7	0.318	22	0.052	DB	478	9.0714	5.008	-0.4667	7	0.318	53.32	0.189	15.41	0.593	0.489	-1.811	MQ	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.402+66138G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0395233	0.0491249	12	10	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,30	0.5,.,0.6	
-aff_only	fam_pl	IP00FNW	chr7:146603134:G:A	1,.,.	7	0.318	22	0.052	DB	478	9.0714	5.008	-0.4667	7	0.318	53.32	0.189	15.41	0.593	0.489	-1.811	MQ	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.402+66138G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0395233	0.0491249	12	10	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.634146,.,.	
-aff_only	fam_pl	IP00FNY	chr7:146603134:G:A	1,.,.	7	0.318	22	0.052	DB	478	9.0714	5.008	-0.4667	7	0.318	53.32	0.189	15.41	0.593	0.489	-1.811	MQ	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.402+66138G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0395233	0.0491249	12	10	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			62,.,.	0.564516,.,.	
-aff_only	fam_pl	C0011JZ	chr7:146655898:C:G	1,.,.	7	0.318	22	1.18		448	9.0714	1.828	-0.4667	7	0.318	60	0	14.43	0.683	0.819	21.97	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.403-85101C>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			27,.,.	0.592593,.,.	
-aff_only	fam_pl	C0011K2	chr7:146655898:C:G	1,.,.	7	0.318	22	1.18		448	9.0714	1.828	-0.4667	7	0.318	60	0	14.43	0.683	0.819	21.97	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.403-85101C>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.583333,.,.	
-aff_only	fam_pl	C0011K3	chr7:146655898:C:G	1,.,.	7	0.318	22	1.18		448	9.0714	1.828	-0.4667	7	0.318	60	0	14.43	0.683	0.819	21.97	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.403-85101C>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.452381,.,.	
-aff_only	fam_pl	C0011KA	chr7:146655898:C:G	1,.,1	7	0.318	22	1.18		448	9.0714	1.828	-0.4667	7	0.318	60	0	14.43	0.683	0.819	21.97	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.403-85101C>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,36	0.444444,.,0.583333	
-aff_only	fam_pl	IP00FNP	chr7:146655898:C:G	1,.,1	7	0.318	22	1.18		448	9.0714	1.828	-0.4667	7	0.318	60	0	14.43	0.683	0.819	21.97	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.403-85101C>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			53,.,27	0.566038,.,0.592593	
-aff_only	fam_pl	IP00FNW	chr7:146655898:C:G	1,.,.	7	0.318	22	1.18		448	9.0714	1.828	-0.4667	7	0.318	60	0	14.43	0.683	0.819	21.97	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.403-85101C>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			59,.,.	0.576271,.,.	
-aff_only	fam_pl	IP00FNY	chr7:146655898:C:G	1,.,.	7	0.318	22	1.18		448	9.0714	1.828	-0.4667	7	0.318	60	0	14.43	0.683	0.819	21.97	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.403-85101C>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			71,.,.	0.408451,.,.	
-aff_only	fam_pl	C0011JZ	chr7:146778675:T:TTG	1,.,.	7	0.318	22	-0.231	DB	332	11.8014	5.311	-0.5714	7	0.318	59.84	0	17.37	-0.222	0.642	6.77	MQRankSum	TG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-26520_551-26519dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,TG|non_coding_transcript_exon_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense|4/4||ENST00000434887.1:n.1494_1495dup||1495-1496/2145|||||||-1||Clone_based_vega_gene||YES||||	-1	0.0743969	0.051922	83	14	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			12,.,.	0.333333,.,.	
-aff_only	fam_pl	C0011K2	chr7:146778675:T:TTG	1,.,.	7	0.318	22	-0.231	DB	332	11.8014	5.311	-0.5714	7	0.318	59.84	0	17.37	-0.222	0.642	6.77	MQRankSum	TG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-26520_551-26519dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,TG|non_coding_transcript_exon_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense|4/4||ENST00000434887.1:n.1494_1495dup||1495-1496/2145|||||||-1||Clone_based_vega_gene||YES||||	-1	0.0743969	0.051922	83	14	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			15,.,.	0.6,.,.	
-aff_only	fam_pl	C0011K3	chr7:146778675:T:TTG	1,.,.	7	0.318	22	-0.231	DB	332	11.8014	5.311	-0.5714	7	0.318	59.84	0	17.37	-0.222	0.642	6.77	MQRankSum	TG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-26520_551-26519dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,TG|non_coding_transcript_exon_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense|4/4||ENST00000434887.1:n.1494_1495dup||1495-1496/2145|||||||-1||Clone_based_vega_gene||YES||||	-1	0.0743969	0.051922	83	14	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			17,.,.	0.647059,.,.	
-aff_only	fam_pl	C0011KA	chr7:146778675:T:TTG	1,.,1	7	0.318	22	-0.231	DB	332	11.8014	5.311	-0.5714	7	0.318	59.84	0	17.37	-0.222	0.642	6.77	MQRankSum	TG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-26520_551-26519dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,TG|non_coding_transcript_exon_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense|4/4||ENST00000434887.1:n.1494_1495dup||1495-1496/2145|||||||-1||Clone_based_vega_gene||YES||||	-1	0.0743969	0.051922	83	14	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			4,.,15	1,.,0.6	
-aff_only	fam_pl	IP00FNP	chr7:146778675:T:TTG	1,.,1	7	0.318	22	-0.231	DB	332	11.8014	5.311	-0.5714	7	0.318	59.84	0	17.37	-0.222	0.642	6.77	MQRankSum	TG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-26520_551-26519dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,TG|non_coding_transcript_exon_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense|4/4||ENST00000434887.1:n.1494_1495dup||1495-1496/2145|||||||-1||Clone_based_vega_gene||YES||||	-1	0.0743969	0.051922	83	14	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			8,.,12	0.375,.,0.333333	
-aff_only	fam_pl	IP00FNW	chr7:146778675:T:TTG	1,.,.	7	0.318	22	-0.231	DB	332	11.8014	5.311	-0.5714	7	0.318	59.84	0	17.37	-0.222	0.642	6.77	MQRankSum	TG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-26520_551-26519dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,TG|non_coding_transcript_exon_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense|4/4||ENST00000434887.1:n.1494_1495dup||1495-1496/2145|||||||-1||Clone_based_vega_gene||YES||||	-1	0.0743969	0.051922	83	14	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			3,.,.	1,.,.	
-aff_only	fam_pl	IP00FNY	chr7:146778675:T:TTG	1,.,.	7	0.318	22	-0.231	DB	332	11.8014	5.311	-0.5714	7	0.318	59.84	0	17.37	-0.222	0.642	6.77	MQRankSum	TG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-26520_551-26519dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,TG|non_coding_transcript_exon_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense|4/4||ENST00000434887.1:n.1494_1495dup||1495-1496/2145|||||||-1||Clone_based_vega_gene||YES||||	-1	0.0743969	0.051922	83	14	39	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			7,.,.	0.714286,.,.	
-aff_only	fam_pl	C0011JZ	chr7:146790164:C:CAT	1,.,.	7	0.318	22	0	DB	452	3.6798	8.604	-0.1579	7	0.318	59.87	0	29.2	0.461	0.459	5.58	MQRankSum	AT|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-15056_551-15055dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,AT|intron_variant&non_coding_transcript_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense||1/3|ENST00000434887.1:n.178+4358_178+4359dup|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.0176655	0.0213255	2	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,.	0.5,.,.	
-aff_only	fam_pl	C0011K2	chr7:146790164:C:CAT	1,.,.	7	0.318	22	0	DB	452	3.6798	8.604	-0.1579	7	0.318	59.87	0	29.2	0.461	0.459	5.58	MQRankSum	AT|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-15056_551-15055dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,AT|intron_variant&non_coding_transcript_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense||1/3|ENST00000434887.1:n.178+4358_178+4359dup|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.0176655	0.0213255	2	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			18,.,.	1,.,.	
-aff_only	fam_pl	C0011K3	chr7:146790164:C:CAT	1,.,.	7	0.318	22	0	DB	452	3.6798	8.604	-0.1579	7	0.318	59.87	0	29.2	0.461	0.459	5.58	MQRankSum	AT|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-15056_551-15055dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,AT|intron_variant&non_coding_transcript_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense||1/3|ENST00000434887.1:n.178+4358_178+4359dup|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.0176655	0.0213255	2	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,.	1,.,.	
-aff_only	fam_pl	C0011KA	chr7:146790164:C:CAT	1,.,1	7	0.318	22	0	DB	452	3.6798	8.604	-0.1579	7	0.318	59.87	0	29.2	0.461	0.459	5.58	MQRankSum	AT|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-15056_551-15055dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,AT|intron_variant&non_coding_transcript_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense||1/3|ENST00000434887.1:n.178+4358_178+4359dup|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.0176655	0.0213255	2	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,18	0.448276,.,1	
-aff_only	fam_pl	IP00FNP	chr7:146790164:C:CAT	1,.,1	7	0.318	22	0	DB	452	3.6798	8.604	-0.1579	7	0.318	59.87	0	29.2	0.461	0.459	5.58	MQRankSum	AT|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-15056_551-15055dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,AT|intron_variant&non_coding_transcript_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense||1/3|ENST00000434887.1:n.178+4358_178+4359dup|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.0176655	0.0213255	2	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			19,.,26	0.947368,.,0.5	
-aff_only	fam_pl	IP00FNW	chr7:146790164:C:CAT	1,.,.	7	0.318	22	0	DB	452	3.6798	8.604	-0.1579	7	0.318	59.87	0	29.2	0.461	0.459	5.58	MQRankSum	AT|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-15056_551-15055dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,AT|intron_variant&non_coding_transcript_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense||1/3|ENST00000434887.1:n.178+4358_178+4359dup|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.0176655	0.0213255	2	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			16,.,.	0.9375,.,.	
-aff_only	fam_pl	IP00FNY	chr7:146790164:C:CAT	1,.,.	7	0.318	22	0	DB	452	3.6798	8.604	-0.1579	7	0.318	59.87	0	29.2	0.461	0.459	5.58	MQRankSum	AT|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-15056_551-15055dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,AT|intron_variant&non_coding_transcript_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense||1/3|ENST00000434887.1:n.178+4358_178+4359dup|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.0176655	0.0213255	2	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,.	0.961538,.,.	
-aff_only	fam_pl	C0011JZ	chr7:146834965:G:GTAGA	1,.,.	7	0.318	22	0.126	DB	475	9.3779	8.071	-0.4667	7	0.318	60.28	0.905	22.79	0.714	0.948	1.87	FS	TAGA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1348+5404_1348+5407dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.223366	0.21519	457	274	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			16,.,.	1,.,.	
-aff_only	fam_pl	C0011K2	chr7:146834965:G:GTAGA	1,.,.	7	0.318	22	0.126	DB	475	9.3779	8.071	-0.4667	7	0.318	60.28	0.905	22.79	0.714	0.948	1.87	FS	TAGA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1348+5404_1348+5407dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.223366	0.21519	457	274	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.571429,.,.	
-aff_only	fam_pl	C0011K3	chr7:146834965:G:GTAGA	1,.,.	7	0.318	22	0.126	DB	475	9.3779	8.071	-0.4667	7	0.318	60.28	0.905	22.79	0.714	0.948	1.87	FS	TAGA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1348+5404_1348+5407dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.223366	0.21519	457	274	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			21,.,.	0.571429,.,.	
-aff_only	fam_pl	C0011KA	chr7:146834965:G:GTAGA	1,.,1	7	0.318	22	0.126	DB	475	9.3779	8.071	-0.4667	7	0.318	60.28	0.905	22.79	0.714	0.948	1.87	FS	TAGA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1348+5404_1348+5407dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.223366	0.21519	457	274	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			27,.,28	0.592593,.,0.571429	
-aff_only	fam_pl	IP00FNP	chr7:146834965:G:GTAGA	1,.,1	7	0.318	22	0.126	DB	475	9.3779	8.071	-0.4667	7	0.318	60.28	0.905	22.79	0.714	0.948	1.87	FS	TAGA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1348+5404_1348+5407dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.223366	0.21519	457	274	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,16	0.28125,.,1	
-aff_only	fam_pl	IP00FNW	chr7:146834965:G:GTAGA	1,.,.	7	0.318	22	0.126	DB	475	9.3779	8.071	-0.4667	7	0.318	60.28	0.905	22.79	0.714	0.948	1.87	FS	TAGA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1348+5404_1348+5407dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.223366	0.21519	457	274	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.516129,.,.	
-aff_only	fam_pl	IP00FNY	chr7:146834965:G:GTAGA	1,.,.	7	0.318	22	0.126	DB	475	9.3779	8.071	-0.4667	7	0.318	60.28	0.905	22.79	0.714	0.948	1.87	FS	TAGA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1348+5404_1348+5407dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.223366	0.21519	457	274	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.464286,.,.	
-aff_only	fam_pl	C0011JZ	chr7:146944250:A:G	1,.,.	7	0.318	22	-0.356		450	9.0714	5.792	-0.4667	7	0.318	60	0	14.15	0.214	0.52	22.12	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-52983A>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.47619,.,.	
-aff_only	fam_pl	C0011K2	chr7:146944250:A:G	1,.,.	7	0.318	22	-0.356		450	9.0714	5.792	-0.4667	7	0.318	60	0	14.15	0.214	0.52	22.12	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-52983A>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.627907,.,.	
-aff_only	fam_pl	C0011K3	chr7:146944250:A:G	1,.,.	7	0.318	22	-0.356		450	9.0714	5.792	-0.4667	7	0.318	60	0	14.15	0.214	0.52	22.12	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-52983A>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.567568,.,.	
-aff_only	fam_pl	C0011KA	chr7:146944250:A:G	1,.,1	7	0.318	22	-0.356		450	9.0714	5.792	-0.4667	7	0.318	60	0	14.15	0.214	0.52	22.12	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-52983A>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,43	0.6,.,0.627907	
-aff_only	fam_pl	IP00FNP	chr7:146944250:A:G	1,.,1	7	0.318	22	-0.356		450	9.0714	5.792	-0.4667	7	0.318	60	0	14.15	0.214	0.52	22.12	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-52983A>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,42	0.609756,.,0.47619	
-aff_only	fam_pl	IP00FNW	chr7:146944250:A:G	1,.,.	7	0.318	22	-0.356		450	9.0714	5.792	-0.4667	7	0.318	60	0	14.15	0.214	0.52	22.12	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-52983A>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,.	0.42,.,.	
-aff_only	fam_pl	IP00FNY	chr7:146944250:A:G	1,.,.	7	0.318	22	-0.356		450	9.0714	5.792	-0.4667	7	0.318	60	0	14.15	0.214	0.52	22.12	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-52983A>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			70,.,.	0.385714,.,.	
-aff_only	fam_pl	C0011JZ	chr7:146983589:C:T	1,.,.	7	0.318	22	2.36	DB	508	9.0714	4.61	-0.4667	7	0.318	60	0	14.61	0.217	0.552	23.44	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-13644C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0140439	0.0185213	4	4	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.459459,.,.	
-aff_only	fam_pl	C0011K2	chr7:146983589:C:T	1,.,.	7	0.318	22	2.36	DB	508	9.0714	4.61	-0.4667	7	0.318	60	0	14.61	0.217	0.552	23.44	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-13644C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0140439	0.0185213	4	4	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.631579,.,.	
-aff_only	fam_pl	C0011K3	chr7:146983589:C:T	1,.,.	7	0.318	22	2.36	DB	508	9.0714	4.61	-0.4667	7	0.318	60	0	14.61	0.217	0.552	23.44	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-13644C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0140439	0.0185213	4	4	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.431818,.,.	
-aff_only	fam_pl	C0011KA	chr7:146983589:C:T	1,.,1	7	0.318	22	2.36	DB	508	9.0714	4.61	-0.4667	7	0.318	60	0	14.61	0.217	0.552	23.44	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-13644C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0140439	0.0185213	4	4	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			23,.,38	0.565217,.,0.631579	
-aff_only	fam_pl	IP00FNP	chr7:146983589:C:T	1,.,1	7	0.318	22	2.36	DB	508	9.0714	4.61	-0.4667	7	0.318	60	0	14.61	0.217	0.552	23.44	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-13644C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0140439	0.0185213	4	4	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			57,.,37	0.491228,.,0.459459	
-aff_only	fam_pl	IP00FNW	chr7:146983589:C:T	1,.,.	7	0.318	22	2.36	DB	508	9.0714	4.61	-0.4667	7	0.318	60	0	14.61	0.217	0.552	23.44	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-13644C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0140439	0.0185213	4	4	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			80,.,.	0.5375,.,.	
-aff_only	fam_pl	IP00FNY	chr7:146983589:C:T	1,.,.	7	0.318	22	2.36	DB	508	9.0714	4.61	-0.4667	7	0.318	60	0	14.61	0.217	0.552	23.44	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-13644C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0140439	0.0185213	4	4	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			85,.,.	0.541176,.,.	
-aff_only	fam_pl	C0011JZ	chr7:147053066:C:T	1,.,.	7	0.318	22	0		462	9.0714	0.839	-0.4667	7	0.318	59.94	0	12.1	0.836	0.766	6.9	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-39635C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	4.705e-05	0	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.457143,.,.	
-aff_only	fam_pl	C0011K2	chr7:147053066:C:T	1,.,.	7	0.318	22	0		462	9.0714	0.839	-0.4667	7	0.318	59.94	0	12.1	0.836	0.766	6.9	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-39635C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	4.705e-05	0	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			56,.,.	0.428571,.,.	
-aff_only	fam_pl	C0011K3	chr7:147053066:C:T	1,.,.	7	0.318	22	0		462	9.0714	0.839	-0.4667	7	0.318	59.94	0	12.1	0.836	0.766	6.9	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-39635C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	4.705e-05	0	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,.	0.596154,.,.	
-aff_only	fam_pl	C0011KA	chr7:147053066:C:T	1,.,1	7	0.318	22	0		462	9.0714	0.839	-0.4667	7	0.318	59.94	0	12.1	0.836	0.766	6.9	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-39635C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	4.705e-05	0	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,56	0.576923,.,0.428571	
-aff_only	fam_pl	IP00FNP	chr7:147053066:C:T	1,.,1	7	0.318	22	0		462	9.0714	0.839	-0.4667	7	0.318	59.94	0	12.1	0.836	0.766	6.9	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-39635C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	4.705e-05	0	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,35	0.315789,.,0.457143	
-aff_only	fam_pl	IP00FNW	chr7:147053066:C:T	1,.,.	7	0.318	22	0		462	9.0714	0.839	-0.4667	7	0.318	59.94	0	12.1	0.836	0.766	6.9	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-39635C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	4.705e-05	0	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			59,.,.	0.40678,.,.	
-aff_only	fam_pl	IP00FNY	chr7:147053066:C:T	1,.,.	7	0.318	22	0		462	9.0714	0.839	-0.4667	7	0.318	59.94	0	12.1	0.836	0.766	6.9	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-39635C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	4.705e-05	0	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			63,.,.	0.380952,.,.	
-aff_only	fam_pl	C0011JZ	chr7:147063869:GCACGCA:G	1,.,.	7	0.318	22	0.785		404	6.4503	21.408	-0.3167	7	0.318	60.48	1.34	16.48	-0.235	0.848	-0.7725	MQ	-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-28828_1499-28823del|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0303613	0.0327977	9	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,.	0.53125,.,.	
-aff_only	fam_pl	C0011K2	chr7:147063869:GCACGCA:G	1,.,.	7	0.318	22	0.785		404	6.4503	21.408	-0.3167	7	0.318	60.48	1.34	16.48	-0.235	0.848	-0.7725	MQ	-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-28828_1499-28823del|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0303613	0.0327977	9	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,.	0.366667,.,.	
-aff_only	fam_pl	C0011K3	chr7:147063869:GCACGCA:G	1,.,.	7	0.318	22	0.785		404	6.4503	21.408	-0.3167	7	0.318	60.48	1.34	16.48	-0.235	0.848	-0.7725	MQ	-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-28828_1499-28823del|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0303613	0.0327977	9	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.594595,.,.	
-aff_only	fam_pl	C0011KA	chr7:147063869:GCACGCA:G	1,.,1	7	0.318	22	0.785		404	6.4503	21.408	-0.3167	7	0.318	60.48	1.34	16.48	-0.235	0.848	-0.7725	MQ	-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-28828_1499-28823del|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0303613	0.0327977	9	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,30	0.56,.,0.366667	
-aff_only	fam_pl	IP00FNP	chr7:147063869:GCACGCA:G	1,.,1	7	0.318	22	0.785		404	6.4503	21.408	-0.3167	7	0.318	60.48	1.34	16.48	-0.235	0.848	-0.7725	MQ	-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-28828_1499-28823del|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0303613	0.0327977	9	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,32	0.590909,.,0.53125	
-aff_only	fam_pl	IP00FNW	chr7:147063869:GCACGCA:G	1,.,.	7	0.318	22	0.785		404	6.4503	21.408	-0.3167	7	0.318	60.48	1.34	16.48	-0.235	0.848	-0.7725	MQ	-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-28828_1499-28823del|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0303613	0.0327977	9	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.425532,.,.	
-aff_only	fam_pl	IP00FNY	chr7:147063869:GCACGCA:G	1,.,.	7	0.318	22	0.785		404	6.4503	21.408	-0.3167	7	0.318	60.48	1.34	16.48	-0.235	0.848	-0.7725	MQ	-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-28828_1499-28823del|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0303613	0.0327977	9	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			13,.,.	1,.,.	
-aff_only	fam_pl	C0011JZ	chr7:147067882:G:T	1,.,.	7	0.318	22	0.49	DB	499	9.0714	1.241	-0.4667	7	0.318	60	0	14.04	-0.477	0.785	23.37	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-24819G>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0155809	0.0210874	6	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.675676,.,.	
-aff_only	fam_pl	C0011K2	chr7:147067882:G:T	1,.,.	7	0.318	22	0.49	DB	499	9.0714	1.241	-0.4667	7	0.318	60	0	14.04	-0.477	0.785	23.37	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-24819G>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0155809	0.0210874	6	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,.	0.46,.,.	
-aff_only	fam_pl	C0011K3	chr7:147067882:G:T	1,.,.	7	0.318	22	0.49	DB	499	9.0714	1.241	-0.4667	7	0.318	60	0	14.04	-0.477	0.785	23.37	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-24819G>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0155809	0.0210874	6	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.534884,.,.	
-aff_only	fam_pl	C0011KA	chr7:147067882:G:T	1,.,1	7	0.318	22	0.49	DB	499	9.0714	1.241	-0.4667	7	0.318	60	0	14.04	-0.477	0.785	23.37	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-24819G>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0155809	0.0210874	6	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,50	0.395833,.,0.46	
-aff_only	fam_pl	IP00FNP	chr7:147067882:G:T	1,.,1	7	0.318	22	0.49	DB	499	9.0714	1.241	-0.4667	7	0.318	60	0	14.04	-0.477	0.785	23.37	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-24819G>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0155809	0.0210874	6	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			59,.,37	0.491525,.,0.675676	
-aff_only	fam_pl	IP00FNW	chr7:147067882:G:T	1,.,.	7	0.318	22	0.49	DB	499	9.0714	1.241	-0.4667	7	0.318	60	0	14.04	-0.477	0.785	23.37	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-24819G>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0155809	0.0210874	6	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			55,.,.	0.509091,.,.	
-aff_only	fam_pl	IP00FNY	chr7:147067882:G:T	1,.,.	7	0.318	22	0.49	DB	499	9.0714	1.241	-0.4667	7	0.318	60	0	14.04	-0.477	0.785	23.37	MQRankSum	T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-24819G>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0155809	0.0210874	6	6	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			72,.,.	0.486111,.,.	
-aff_only	fam_pl	C0011JZ	chr7:147118677:C:CTGTGTG	1,.,.	7	0.318	22	0	DB	481	3.2222	3.536	-0.1	7	0.318	60.13	0	28.73	-0.114	0.891	8.31	MQRankSum	TGTGTG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+25829_1670+25834dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			19,.,.	1,.,.	
-aff_only	fam_pl	C0011K2	chr7:147118677:C:CTGTGTG	1,.,.	7	0.318	22	0	DB	481	3.2222	3.536	-0.1	7	0.318	60.13	0	28.73	-0.114	0.891	8.31	MQRankSum	TGTGTG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+25829_1670+25834dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			12,.,.	1,.,.	
-aff_only	fam_pl	C0011K3	chr7:147118677:C:CTGTGTG	1,.,.	7	0.318	22	0	DB	481	3.2222	3.536	-0.1	7	0.318	60.13	0	28.73	-0.114	0.891	8.31	MQRankSum	TGTGTG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+25829_1670+25834dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			15,.,.	1,.,.	
-aff_only	fam_pl	C0011KA	chr7:147118677:C:CTGTGTG	1,.,1	7	0.318	22	0	DB	481	3.2222	3.536	-0.1	7	0.318	60.13	0	28.73	-0.114	0.891	8.31	MQRankSum	TGTGTG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+25829_1670+25834dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			9,.,12	1,.,1	
-aff_only	fam_pl	IP00FNP	chr7:147118677:C:CTGTGTG	1,.,1	7	0.318	22	0	DB	481	3.2222	3.536	-0.1	7	0.318	60.13	0	28.73	-0.114	0.891	8.31	MQRankSum	TGTGTG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+25829_1670+25834dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			19,.,19	1,.,1	
-aff_only	fam_pl	IP00FNW	chr7:147118677:C:CTGTGTG	1,.,.	7	0.318	22	0	DB	481	3.2222	3.536	-0.1	7	0.318	60.13	0	28.73	-0.114	0.891	8.31	MQRankSum	TGTGTG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+25829_1670+25834dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			10,.,.	1,.,.	
-aff_only	fam_pl	IP00FNY	chr7:147118677:C:CTGTGTG	1,.,.	7	0.318	22	0	DB	481	3.2222	3.536	-0.1	7	0.318	60.13	0	28.73	-0.114	0.891	8.31	MQRankSum	TGTGTG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+25829_1670+25834dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			54,.,.	0.444444,.,.	
-aff_only	fam_pl	C0011JZ	chr7:147124964:T:G	1,.,.	7	0.318	22	0	DB	472	9.0714	5.858	-0.4667	7	0.318	60	0	14.66	0.19	1.007	23.86	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+32092T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0221218	0.0290963	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,.	0.5625,.,.	
-aff_only	fam_pl	C0011K2	chr7:147124964:T:G	1,.,.	7	0.318	22	0	DB	472	9.0714	5.858	-0.4667	7	0.318	60	0	14.66	0.19	1.007	23.86	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+32092T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0221218	0.0290963	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.410256,.,.	
-aff_only	fam_pl	C0011K3	chr7:147124964:T:G	1,.,.	7	0.318	22	0	DB	472	9.0714	5.858	-0.4667	7	0.318	60	0	14.66	0.19	1.007	23.86	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+32092T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0221218	0.0290963	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.611111,.,.	
-aff_only	fam_pl	C0011KA	chr7:147124964:T:G	1,.,1	7	0.318	22	0	DB	472	9.0714	5.858	-0.4667	7	0.318	60	0	14.66	0.19	1.007	23.86	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+32092T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0221218	0.0290963	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,39	0.658537,.,0.410256	
-aff_only	fam_pl	IP00FNP	chr7:147124964:T:G	1,.,1	7	0.318	22	0	DB	472	9.0714	5.858	-0.4667	7	0.318	60	0	14.66	0.19	1.007	23.86	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+32092T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0221218	0.0290963	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,32	0.538462,.,0.5625	
-aff_only	fam_pl	IP00FNW	chr7:147124964:T:G	1,.,.	7	0.318	22	0	DB	472	9.0714	5.858	-0.4667	7	0.318	60	0	14.66	0.19	1.007	23.86	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+32092T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0221218	0.0290963	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			53,.,.	0.566038,.,.	
-aff_only	fam_pl	IP00FNY	chr7:147124964:T:G	1,.,.	7	0.318	22	0	DB	472	9.0714	5.858	-0.4667	7	0.318	60	0	14.66	0.19	1.007	23.86	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+32092T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0221218	0.0290963	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			76,.,.	0.407895,.,.	
-aff_only	fam_pl	C0011JZ	chr7:147128097:G:A	1,.,.	7	0.318	22	1.31	DB	424	9.0714	0.963	-0.4667	7	0.318	59.94	0	13.57	1.08	0.604	8.18	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+35225G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.12109	0.161241	180	163	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,.	0.48,.,.	
-aff_only	fam_pl	C0011K2	chr7:147128097:G:A	1,.,.	7	0.318	22	1.31	DB	424	9.0714	0.963	-0.4667	7	0.318	59.94	0	13.57	1.08	0.604	8.18	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+35225G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.12109	0.161241	180	163	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.567568,.,.	
-aff_only	fam_pl	C0011K3	chr7:147128097:G:A	1,.,.	7	0.318	22	1.31	DB	424	9.0714	0.963	-0.4667	7	0.318	59.94	0	13.57	1.08	0.604	8.18	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+35225G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.12109	0.161241	180	163	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.473684,.,.	
-aff_only	fam_pl	C0011KA	chr7:147128097:G:A	1,.,1	7	0.318	22	1.31	DB	424	9.0714	0.963	-0.4667	7	0.318	59.94	0	13.57	1.08	0.604	8.18	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+35225G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.12109	0.161241	180	163	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,37	0.433333,.,0.567568	
-aff_only	fam_pl	IP00FNP	chr7:147128097:G:A	1,.,1	7	0.318	22	1.31	DB	424	9.0714	0.963	-0.4667	7	0.318	59.94	0	13.57	1.08	0.604	8.18	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+35225G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.12109	0.161241	180	163	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,25	0.684211,.,0.48	
-aff_only	fam_pl	IP00FNW	chr7:147128097:G:A	1,.,.	7	0.318	22	1.31	DB	424	9.0714	0.963	-0.4667	7	0.318	59.94	0	13.57	1.08	0.604	8.18	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+35225G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.12109	0.161241	180	163	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.512821,.,.	
-aff_only	fam_pl	IP00FNY	chr7:147128097:G:A	1,.,.	7	0.318	22	1.31	DB	424	9.0714	0.963	-0.4667	7	0.318	59.94	0	13.57	1.08	0.604	8.18	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+35225G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.12109	0.161241	180	163	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			53,.,.	0.377358,.,.	
-aff_only	fam_pl	C0011JZ	chr7:147145574:G:GTA	1,.,.	7	0.318	22	0.329	DB	472	20.6	11.925	-0.8333	7	0.318	60.18	0	11.09	0.58	0.813	5.5	MQRankSum	TA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-37452_1671-37451insAT|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.216085	0.241488	193	130	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.424242,.,.	
-aff_only	fam_pl	C0011K2	chr7:147145574:G:GTA	1,.,.	7	0.318	22	0.329	DB	472	20.6	11.925	-0.8333	7	0.318	60.18	0	11.09	0.58	0.813	5.5	MQRankSum	TA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-37452_1671-37451insAT|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.216085	0.241488	193	130	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,.	0.5,.,.	
-aff_only	fam_pl	C0011K3	chr7:147145574:G:GTA	1,.,.	7	0.318	22	0.329	DB	472	20.6	11.925	-0.8333	7	0.318	60.18	0	11.09	0.58	0.813	5.5	MQRankSum	TA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-37452_1671-37451insAT|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.216085	0.241488	193	130	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.457143,.,.	
-aff_only	fam_pl	C0011KA	chr7:147145574:G:GTA	1,.,1	7	0.318	22	0.329	DB	472	20.6	11.925	-0.8333	7	0.318	60.18	0	11.09	0.58	0.813	5.5	MQRankSum	TA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-37452_1671-37451insAT|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.216085	0.241488	193	130	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			22,.,26	0.409091,.,0.5	
-aff_only	fam_pl	IP00FNP	chr7:147145574:G:GTA	1,.,1	7	0.318	22	0.329	DB	472	20.6	11.925	-0.8333	7	0.318	60.18	0	11.09	0.58	0.813	5.5	MQRankSum	TA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-37452_1671-37451insAT|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.216085	0.241488	193	130	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,33	0.513514,.,0.424242	
-aff_only	fam_pl	IP00FNW	chr7:147145574:G:GTA	1,.,.	7	0.318	22	0.329	DB	472	20.6	11.925	-0.8333	7	0.318	60.18	0	11.09	0.58	0.813	5.5	MQRankSum	TA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-37452_1671-37451insAT|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.216085	0.241488	193	130	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,.	0.352941,.,.	
-aff_only	fam_pl	IP00FNY	chr7:147145574:G:GTA	1,.,.	7	0.318	22	0.329	DB	472	20.6	11.925	-0.8333	7	0.318	60.18	0	11.09	0.58	0.813	5.5	MQRankSum	TA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-37452_1671-37451insAT|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.216085	0.241488	193	130	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			62,.,.	0.306452,.,.	
-aff_only	fam_pl	C0011JZ	chr7:147157874:T:G	1,.,.	7	0.318	22	-0.968	DB	471	9.0714	0.407	-0.4667	7	0.318	60	0	15.84	0.27	0.742	23.52	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-25153T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0148552	0.0195215	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			27,.,.	0.407407,.,.	
-aff_only	fam_pl	C0011K2	chr7:147157874:T:G	1,.,.	7	0.318	22	-0.968	DB	471	9.0714	0.407	-0.4667	7	0.318	60	0	15.84	0.27	0.742	23.52	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-25153T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0148552	0.0195215	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.638889,.,.	
-aff_only	fam_pl	C0011K3	chr7:147157874:T:G	1,.,.	7	0.318	22	-0.968	DB	471	9.0714	0.407	-0.4667	7	0.318	60	0	15.84	0.27	0.742	23.52	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-25153T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0148552	0.0195215	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.477273,.,.	
-aff_only	fam_pl	C0011KA	chr7:147157874:T:G	1,.,1	7	0.318	22	-0.968	DB	471	9.0714	0.407	-0.4667	7	0.318	60	0	15.84	0.27	0.742	23.52	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-25153T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0148552	0.0195215	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,36	0.580645,.,0.638889	
-aff_only	fam_pl	IP00FNP	chr7:147157874:T:G	1,.,1	7	0.318	22	-0.968	DB	471	9.0714	0.407	-0.4667	7	0.318	60	0	15.84	0.27	0.742	23.52	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-25153T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0148552	0.0195215	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			56,.,27	0.553571,.,0.407407	
-aff_only	fam_pl	IP00FNW	chr7:147157874:T:G	1,.,.	7	0.318	22	-0.968	DB	471	9.0714	0.407	-0.4667	7	0.318	60	0	15.84	0.27	0.742	23.52	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-25153T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0148552	0.0195215	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			63,.,.	0.587302,.,.	
-aff_only	fam_pl	IP00FNY	chr7:147157874:T:G	1,.,.	7	0.318	22	-0.968	DB	471	9.0714	0.407	-0.4667	7	0.318	60	0	15.84	0.27	0.742	23.52	MQRankSum	G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-25153T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0148552	0.0195215	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			65,.,.	0.584615,.,.	
-aff_only	fam_pl	C0011JZ	chr7:147170359:G:A	1,.,.	7	0.318	22	1.03	DB	466	9.0714	0.402	-0.4667	7	0.318	60	0	13.32	0.547	0.737	23.42	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-12668G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.129082	0.16696	204	185	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			27,.,.	0.555556,.,.	
-aff_only	fam_pl	C0011K2	chr7:147170359:G:A	1,.,.	7	0.318	22	1.03	DB	466	9.0714	0.402	-0.4667	7	0.318	60	0	13.32	0.547	0.737	23.42	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-12668G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.129082	0.16696	204	185	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.555556,.,.	
-aff_only	fam_pl	C0011K3	chr7:147170359:G:A	1,.,.	7	0.318	22	1.03	DB	466	9.0714	0.402	-0.4667	7	0.318	60	0	13.32	0.547	0.737	23.42	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-12668G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.129082	0.16696	204	185	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.486486,.,.	
-aff_only	fam_pl	C0011KA	chr7:147170359:G:A	1,.,1	7	0.318	22	1.03	DB	466	9.0714	0.402	-0.4667	7	0.318	60	0	13.32	0.547	0.737	23.42	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-12668G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.129082	0.16696	204	185	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,36	0.357143,.,0.555556	
-aff_only	fam_pl	IP00FNP	chr7:147170359:G:A	1,.,1	7	0.318	22	1.03	DB	466	9.0714	0.402	-0.4667	7	0.318	60	0	13.32	0.547	0.737	23.42	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-12668G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.129082	0.16696	204	185	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			65,.,27	0.446154,.,0.555556	
-aff_only	fam_pl	IP00FNW	chr7:147170359:G:A	1,.,.	7	0.318	22	1.03	DB	466	9.0714	0.402	-0.4667	7	0.318	60	0	13.32	0.547	0.737	23.42	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-12668G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.129082	0.16696	204	185	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			53,.,.	0.528302,.,.	
-aff_only	fam_pl	IP00FNY	chr7:147170359:G:A	1,.,.	7	0.318	22	1.03	DB	466	9.0714	0.402	-0.4667	7	0.318	60	0	13.32	0.547	0.737	23.42	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-12668G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.129082	0.16696	204	185	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			79,.,.	0.443038,.,.	
-aff_only	fam_pl	C0011JZ	chr7:147183978:T:C	1,.,.	7	0.318	22	-1.659	DB	419	9.0714	4.886	-0.4667	7	0.318	59.59	0	13.36	-0.822	0.468	4.37	MQRankSum	C|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+845T>C|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.13837	0.175109	200	181	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,.	0.448276,.,.	
-aff_only	fam_pl	C0011K2	chr7:147183978:T:C	1,.,.	7	0.318	22	-1.659	DB	419	9.0714	4.886	-0.4667	7	0.318	59.59	0	13.36	-0.822	0.468	4.37	MQRankSum	C|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+845T>C|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.13837	0.175109	200	181	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.5,.,.	
-aff_only	fam_pl	C0011K3	chr7:147183978:T:C	1,.,.	7	0.318	22	-1.659	DB	419	9.0714	4.886	-0.4667	7	0.318	59.59	0	13.36	-0.822	0.468	4.37	MQRankSum	C|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+845T>C|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.13837	0.175109	200	181	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,.	0.62069,.,.	
-aff_only	fam_pl	C0011KA	chr7:147183978:T:C	1,.,1	7	0.318	22	-1.659	DB	419	9.0714	4.886	-0.4667	7	0.318	59.59	0	13.36	-0.822	0.468	4.37	MQRankSum	C|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+845T>C|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.13837	0.175109	200	181	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,36	0.657143,.,0.5	
-aff_only	fam_pl	IP00FNP	chr7:147183978:T:C	1,.,1	7	0.318	22	-1.659	DB	419	9.0714	4.886	-0.4667	7	0.318	59.59	0	13.36	-0.822	0.468	4.37	MQRankSum	C|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+845T>C|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.13837	0.175109	200	181	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,29	0.422222,.,0.448276	
-aff_only	fam_pl	IP00FNW	chr7:147183978:T:C	1,.,.	7	0.318	22	-1.659	DB	419	9.0714	4.886	-0.4667	7	0.318	59.59	0	13.36	-0.822	0.468	4.37	MQRankSum	C|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+845T>C|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.13837	0.175109	200	181	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.319149,.,.	
-aff_only	fam_pl	IP00FNY	chr7:147183978:T:C	1,.,.	7	0.318	22	-1.659	DB	419	9.0714	4.886	-0.4667	7	0.318	59.59	0	13.36	-0.822	0.468	4.37	MQRankSum	C|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+845T>C|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.13837	0.175109	200	181	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			49,.,.	0.387755,.,.	
-aff_only	fam_pl	C0011JZ	chr7:147191560:C:CAAAAA	1,.,.	7	0.318	22	0	DB	288	3.2222	2.68	-0.1	7	0.318	60.07	1.27	35.92	-0.14	0.356	0.871	QD	AAAAA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+8441_1777+8445dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.160172	0.157468	287	172	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			4,.,.	1,.,.	
-aff_only	fam_pl	C0011K2	chr7:147191560:C:CAAAAA	1,.,.	7	0.318	22	0	DB	288	3.2222	2.68	-0.1	7	0.318	60.07	1.27	35.92	-0.14	0.356	0.871	QD	AAAAA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+8441_1777+8445dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.160172	0.157468	287	172	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			3,.,.	1,.,.	
-aff_only	fam_pl	C0011K3	chr7:147191560:C:CAAAAA	1,.,.	7	0.318	22	0	DB	288	3.2222	2.68	-0.1	7	0.318	60.07	1.27	35.92	-0.14	0.356	0.871	QD	AAAAA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+8441_1777+8445dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.160172	0.157468	287	172	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			10,.,.	1,.,.	
-aff_only	fam_pl	C0011KA	chr7:147191560:C:CAAAAA	1,.,1	7	0.318	22	0	DB	288	3.2222	2.68	-0.1	7	0.318	60.07	1.27	35.92	-0.14	0.356	0.871	QD	AAAAA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+8441_1777+8445dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.160172	0.157468	287	172	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			6,.,3	1,.,1	
-aff_only	fam_pl	IP00FNP	chr7:147191560:C:CAAAAA	1,.,1	7	0.318	22	0	DB	288	3.2222	2.68	-0.1	7	0.318	60.07	1.27	35.92	-0.14	0.356	0.871	QD	AAAAA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+8441_1777+8445dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.160172	0.157468	287	172	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			1,.,4	1,.,1	
-aff_only	fam_pl	IP00FNW	chr7:147191560:C:CAAAAA	1,.,.	7	0.318	22	0	DB	288	3.2222	2.68	-0.1	7	0.318	60.07	1.27	35.92	-0.14	0.356	0.871	QD	AAAAA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+8441_1777+8445dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.160172	0.157468	287	172	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			3,.,.	1,.,.	
-aff_only	fam_pl	IP00FNY	chr7:147191560:C:CAAAAA	1,.,.	7	0.318	22	0	DB	288	3.2222	2.68	-0.1	7	0.318	60.07	1.27	35.92	-0.14	0.356	0.871	QD	AAAAA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+8441_1777+8445dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.160172	0.157468	287	172	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			12,.,.	0.5,.,.	
-aff_only	fam_pl	C0011JZ	chr7:147199809:ATG:A	1,.,.	7	0.318	22	0.335	DB	418	9.0714	0	-0.4667	7	0.318	60.04	0	12.39	0	0.721	8.85	MQRankSum	-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+16700_1777+16701del|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.142121	0.168577	201	165	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			22,.,.	0.590909,.,.	
-aff_only	fam_pl	C0011K2	chr7:147199809:ATG:A	1,.,.	7	0.318	22	0.335	DB	418	9.0714	0	-0.4667	7	0.318	60.04	0	12.39	0	0.721	8.85	MQRankSum	-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+16700_1777+16701del|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.142121	0.168577	201	165	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			22,.,.	0.363636,.,.	
-aff_only	fam_pl	C0011K3	chr7:147199809:ATG:A	1,.,.	7	0.318	22	0.335	DB	418	9.0714	0	-0.4667	7	0.318	60.04	0	12.39	0	0.721	8.85	MQRankSum	-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+16700_1777+16701del|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.142121	0.168577	201	165	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			21,.,.	0.52381,.,.	
-aff_only	fam_pl	C0011KA	chr7:147199809:ATG:A	1,.,1	7	0.318	22	0.335	DB	418	9.0714	0	-0.4667	7	0.318	60.04	0	12.39	0	0.721	8.85	MQRankSum	-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+16700_1777+16701del|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.142121	0.168577	201	165	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,22	0.64,.,0.363636	
-aff_only	fam_pl	IP00FNP	chr7:147199809:ATG:A	1,.,1	7	0.318	22	0.335	DB	418	9.0714	0	-0.4667	7	0.318	60.04	0	12.39	0	0.721	8.85	MQRankSum	-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+16700_1777+16701del|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.142121	0.168577	201	165	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,22	0.375,.,0.590909	
-aff_only	fam_pl	IP00FNW	chr7:147199809:ATG:A	1,.,.	7	0.318	22	0.335	DB	418	9.0714	0	-0.4667	7	0.318	60.04	0	12.39	0	0.721	8.85	MQRankSum	-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+16700_1777+16701del|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.142121	0.168577	201	165	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			27,.,.	0.296296,.,.	
-aff_only	fam_pl	IP00FNY	chr7:147199809:ATG:A	1,.,.	7	0.318	22	0.335	DB	418	9.0714	0	-0.4667	7	0.318	60.04	0	12.39	0	0.721	8.85	MQRankSum	-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+16700_1777+16701del|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.142121	0.168577	201	165	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.44186,.,.	
-aff_only	fam_pl	C0011JZ	chr7:147205999:G:A	1,.,.	7	0.318	22	1.45	DB	479	9.0714	3.472	-0.4667	7	0.318	60	0	13.55	0.092	0.76	23.44	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+22866G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0210274	0.027027	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.454545,.,.	
-aff_only	fam_pl	C0011K2	chr7:147205999:G:A	1,.,.	7	0.318	22	1.45	DB	479	9.0714	3.472	-0.4667	7	0.318	60	0	13.55	0.092	0.76	23.44	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+22866G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0210274	0.027027	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.424242,.,.	
-aff_only	fam_pl	C0011K3	chr7:147205999:G:A	1,.,.	7	0.318	22	1.45	DB	479	9.0714	3.472	-0.4667	7	0.318	60	0	13.55	0.092	0.76	23.44	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+22866G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0210274	0.027027	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.560976,.,.	
-aff_only	fam_pl	C0011KA	chr7:147205999:G:A	1,.,1	7	0.318	22	1.45	DB	479	9.0714	3.472	-0.4667	7	0.318	60	0	13.55	0.092	0.76	23.44	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+22866G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0210274	0.027027	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,33	0.391304,.,0.424242	
-aff_only	fam_pl	IP00FNP	chr7:147205999:G:A	1,.,1	7	0.318	22	1.45	DB	479	9.0714	3.472	-0.4667	7	0.318	60	0	13.55	0.092	0.76	23.44	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+22866G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0210274	0.027027	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,33	0.480769,.,0.454545	
-aff_only	fam_pl	IP00FNW	chr7:147205999:G:A	1,.,.	7	0.318	22	1.45	DB	479	9.0714	3.472	-0.4667	7	0.318	60	0	13.55	0.092	0.76	23.44	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+22866G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0210274	0.027027	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.534884,.,.	
-aff_only	fam_pl	IP00FNY	chr7:147205999:G:A	1,.,.	7	0.318	22	1.45	DB	479	9.0714	3.472	-0.4667	7	0.318	60	0	13.55	0.092	0.76	23.44	MQRankSum	A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+22866G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||	-1	0.0210274	0.027027	5	5	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			92,.,.	0.48913,.,.	
-aff_only	fam_pl	C0011JZ	chr7:152103755:G:A	1,.,.	7	0.318	22	0.796	DB	534	9.0714	12.11	-0.4567	7	0.318	55.8	-5.587	5.87	2.02	0.643	-2.653	MQ	A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000262189|protein_coding||1/58|ENST00000262189.6:c.161+28956C>T|||||||||-1||HGNC|13726|YES|CCDS5931.1|||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000355193|protein_coding||1/59|ENST00000355193.2:c.161+28956C>T|||||||||-1||HGNC|13726|||||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000452749|protein_coding||1/3|ENST00000452749.1:c.161+28956C>T|||||||||-1|cds_end_NF|HGNC|13726|||||,A|downstream_gene_variant|MODIFIER|Y_RNA|ENSG00000253088|Transcript|ENST00000517279|misc_RNA|||||||||||3777|1||RFAM||YES||||,A|intron_variant&NMD_transcript_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000558084|nonsense_mediated_decay||1/58|ENST00000558084.1:c.161+28956C>T|||||||||-1||HGNC|13726|||||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.107143,.,.	
-aff_only	fam_pl	C0011K2	chr7:152103755:G:A	1,.,.	7	0.318	22	0.796	DB	534	9.0714	12.11	-0.4567	7	0.318	55.8	-5.587	5.87	2.02	0.643	-2.653	MQ	A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000262189|protein_coding||1/58|ENST00000262189.6:c.161+28956C>T|||||||||-1||HGNC|13726|YES|CCDS5931.1|||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000355193|protein_coding||1/59|ENST00000355193.2:c.161+28956C>T|||||||||-1||HGNC|13726|||||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000452749|protein_coding||1/3|ENST00000452749.1:c.161+28956C>T|||||||||-1|cds_end_NF|HGNC|13726|||||,A|downstream_gene_variant|MODIFIER|Y_RNA|ENSG00000253088|Transcript|ENST00000517279|misc_RNA|||||||||||3777|1||RFAM||YES||||,A|intron_variant&NMD_transcript_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000558084|nonsense_mediated_decay||1/58|ENST00000558084.1:c.161+28956C>T|||||||||-1||HGNC|13726|||||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.190476,.,.	
-aff_only	fam_pl	C0011K3	chr7:152103755:G:A	1,.,.	7	0.318	22	0.796	DB	534	9.0714	12.11	-0.4567	7	0.318	55.8	-5.587	5.87	2.02	0.643	-2.653	MQ	A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000262189|protein_coding||1/58|ENST00000262189.6:c.161+28956C>T|||||||||-1||HGNC|13726|YES|CCDS5931.1|||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000355193|protein_coding||1/59|ENST00000355193.2:c.161+28956C>T|||||||||-1||HGNC|13726|||||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000452749|protein_coding||1/3|ENST00000452749.1:c.161+28956C>T|||||||||-1|cds_end_NF|HGNC|13726|||||,A|downstream_gene_variant|MODIFIER|Y_RNA|ENSG00000253088|Transcript|ENST00000517279|misc_RNA|||||||||||3777|1||RFAM||YES||||,A|intron_variant&NMD_transcript_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000558084|nonsense_mediated_decay||1/58|ENST00000558084.1:c.161+28956C>T|||||||||-1||HGNC|13726|||||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.136364,.,.	
-aff_only	fam_pl	C0011KA	chr7:152103755:G:A	1,.,1	7	0.318	22	0.796	DB	534	9.0714	12.11	-0.4567	7	0.318	55.8	-5.587	5.87	2.02	0.643	-2.653	MQ	A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000262189|protein_coding||1/58|ENST00000262189.6:c.161+28956C>T|||||||||-1||HGNC|13726|YES|CCDS5931.1|||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000355193|protein_coding||1/59|ENST00000355193.2:c.161+28956C>T|||||||||-1||HGNC|13726|||||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000452749|protein_coding||1/3|ENST00000452749.1:c.161+28956C>T|||||||||-1|cds_end_NF|HGNC|13726|||||,A|downstream_gene_variant|MODIFIER|Y_RNA|ENSG00000253088|Transcript|ENST00000517279|misc_RNA|||||||||||3777|1||RFAM||YES||||,A|intron_variant&NMD_transcript_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000558084|nonsense_mediated_decay||1/58|ENST00000558084.1:c.161+28956C>T|||||||||-1||HGNC|13726|||||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,42	0.186047,.,0.190476	
-aff_only	fam_pl	IP00FNP	chr7:152103755:G:A	1,.,1	7	0.318	22	0.796	DB	534	9.0714	12.11	-0.4567	7	0.318	55.8	-5.587	5.87	2.02	0.643	-2.653	MQ	A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000262189|protein_coding||1/58|ENST00000262189.6:c.161+28956C>T|||||||||-1||HGNC|13726|YES|CCDS5931.1|||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000355193|protein_coding||1/59|ENST00000355193.2:c.161+28956C>T|||||||||-1||HGNC|13726|||||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000452749|protein_coding||1/3|ENST00000452749.1:c.161+28956C>T|||||||||-1|cds_end_NF|HGNC|13726|||||,A|downstream_gene_variant|MODIFIER|Y_RNA|ENSG00000253088|Transcript|ENST00000517279|misc_RNA|||||||||||3777|1||RFAM||YES||||,A|intron_variant&NMD_transcript_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000558084|nonsense_mediated_decay||1/58|ENST00000558084.1:c.161+28956C>T|||||||||-1||HGNC|13726|||||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			59,.,28	0.338983,.,0.107143	
-aff_only	fam_pl	IP00FNW	chr7:152103755:G:A	1,.,.	7	0.318	22	0.796	DB	534	9.0714	12.11	-0.4567	7	0.318	55.8	-5.587	5.87	2.02	0.643	-2.653	MQ	A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000262189|protein_coding||1/58|ENST00000262189.6:c.161+28956C>T|||||||||-1||HGNC|13726|YES|CCDS5931.1|||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000355193|protein_coding||1/59|ENST00000355193.2:c.161+28956C>T|||||||||-1||HGNC|13726|||||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000452749|protein_coding||1/3|ENST00000452749.1:c.161+28956C>T|||||||||-1|cds_end_NF|HGNC|13726|||||,A|downstream_gene_variant|MODIFIER|Y_RNA|ENSG00000253088|Transcript|ENST00000517279|misc_RNA|||||||||||3777|1||RFAM||YES||||,A|intron_variant&NMD_transcript_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000558084|nonsense_mediated_decay||1/58|ENST00000558084.1:c.161+28956C>T|||||||||-1||HGNC|13726|||||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.119048,.,.	
-aff_only	fam_pl	IP00FNY	chr7:152103755:G:A	1,.,.	7	0.318	22	0.796	DB	534	9.0714	12.11	-0.4567	7	0.318	55.8	-5.587	5.87	2.02	0.643	-2.653	MQ	A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000262189|protein_coding||1/58|ENST00000262189.6:c.161+28956C>T|||||||||-1||HGNC|13726|YES|CCDS5931.1|||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000355193|protein_coding||1/59|ENST00000355193.2:c.161+28956C>T|||||||||-1||HGNC|13726|||||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000452749|protein_coding||1/3|ENST00000452749.1:c.161+28956C>T|||||||||-1|cds_end_NF|HGNC|13726|||||,A|downstream_gene_variant|MODIFIER|Y_RNA|ENSG00000253088|Transcript|ENST00000517279|misc_RNA|||||||||||3777|1||RFAM||YES||||,A|intron_variant&NMD_transcript_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000558084|nonsense_mediated_decay||1/58|ENST00000558084.1:c.161+28956C>T|||||||||-1||HGNC|13726|||||	-1	-1	-1	-1	-1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			83,.,.	0.445783,.,.	
-aff_only	fam_pl	C0011JZ	chr9:45645893:C:A	1,.,.	7	0.318	22	-0.248		486	9.0714	39.551	-0.4675	7	0.318	37.36	-1.297	2.68	1.44	2.488	-23.11	MQ	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0477956	0.0522528	2	2	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			23,.,.	0.173913,.,.	
-aff_only	fam_pl	C0011K2	chr9:45645893:C:A	1,.,.	7	0.318	22	-0.248		486	9.0714	39.551	-0.4675	7	0.318	37.36	-1.297	2.68	1.44	2.488	-23.11	MQ	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0477956	0.0522528	2	2	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.142857,.,.	
-aff_only	fam_pl	C0011K3	chr9:45645893:C:A	1,.,.	7	0.318	22	-0.248		486	9.0714	39.551	-0.4675	7	0.318	37.36	-1.297	2.68	1.44	2.488	-23.11	MQ	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0477956	0.0522528	2	2	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.119048,.,.	
-aff_only	fam_pl	C0011KA	chr9:45645893:C:A	1,.,1	7	0.318	22	-0.248		486	9.0714	39.551	-0.4675	7	0.318	37.36	-1.297	2.68	1.44	2.488	-23.11	MQ	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0477956	0.0522528	2	2	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,28	0.263158,.,0.142857	
-aff_only	fam_pl	IP00FNP	chr9:45645893:C:A	1,.,1	7	0.318	22	-0.248		486	9.0714	39.551	-0.4675	7	0.318	37.36	-1.297	2.68	1.44	2.488	-23.11	MQ	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0477956	0.0522528	2	2	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			58,.,23	0.258621,.,0.173913	
-aff_only	fam_pl	IP00FNW	chr9:45645893:C:A	1,.,.	7	0.318	22	-0.248		486	9.0714	39.551	-0.4675	7	0.318	37.36	-1.297	2.68	1.44	2.488	-23.11	MQ	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0477956	0.0522528	2	2	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			49,.,.	0.244898,.,.	
-aff_only	fam_pl	IP00FNY	chr9:45645893:C:A	1,.,.	7	0.318	22	-0.248		486	9.0714	39.551	-0.4675	7	0.318	37.36	-1.297	2.68	1.44	2.488	-23.11	MQ	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0477956	0.0522528	2	2	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			77,.,.	0.12987,.,.	
-aff_only	fam_pl	C0011JZ	chr9:69791969:G:C	1,.,.	7	0.318	22	0.67	DB	571	9.0714	0	-0.4585	7	0.318	31.18	-1.009	1.12	0.097	0.65	-8.379	MQ	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.12686	0.146961	0	0	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,.	0.195652,.,.	
-aff_only	fam_pl	C0011K2	chr9:69791969:G:C	1,.,.	7	0.318	22	0.67	DB	571	9.0714	0	-0.4585	7	0.318	31.18	-1.009	1.12	0.097	0.65	-8.379	MQ	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.12686	0.146961	0	0	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.0851064,.,.	
-aff_only	fam_pl	C0011K3	chr9:69791969:G:C	1,.,.	7	0.318	22	0.67	DB	571	9.0714	0	-0.4585	7	0.318	31.18	-1.009	1.12	0.097	0.65	-8.379	MQ	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.12686	0.146961	0	0	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			49,.,.	0.102041,.,.	
-aff_only	fam_pl	C0011KA	chr9:69791969:G:C	1,.,1	7	0.318	22	0.67	DB	571	9.0714	0	-0.4585	7	0.318	31.18	-1.009	1.12	0.097	0.65	-8.379	MQ	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.12686	0.146961	0	0	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,47	0.147059,.,0.0851064	
-aff_only	fam_pl	IP00FNP	chr9:69791969:G:C	1,.,1	7	0.318	22	0.67	DB	571	9.0714	0	-0.4585	7	0.318	31.18	-1.009	1.12	0.097	0.65	-8.379	MQ	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.12686	0.146961	0	0	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,46	0.145833,.,0.195652	
-aff_only	fam_pl	IP00FNW	chr9:69791969:G:C	1,.,.	7	0.318	22	0.67	DB	571	9.0714	0	-0.4585	7	0.318	31.18	-1.009	1.12	0.097	0.65	-8.379	MQ	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.12686	0.146961	0	0	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.2,.,.	
-aff_only	fam_pl	IP00FNY	chr9:69791969:G:C	1,.,.	7	0.318	22	0.67	DB	571	9.0714	0	-0.4585	7	0.318	31.18	-1.009	1.12	0.097	0.65	-8.379	MQ	C|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.12686	0.146961	0	0	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			91,.,.	0.131868,.,.	
-aff_only	fam_pl	C0011JZ	chr9:141127790:AG:A	1,.,.	7	0.318	22	0.455	DB	533	28.3816	0	-1	7	0.318	55.53	-4.96	2.67	-1.09	0.694	-0.666	MQ	-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000446912|lincRNA||3/8|ENST00000446912.2:n.906+6241del|||||||||1||HGNC|34080|YES||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000540522|lincRNA||6/6|ENST00000540522.1:n.1175+3518del|||||||||1||HGNC|34080|||||	-1	0.138235	0.106121	2	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.238095,.,.	
-aff_only	fam_pl	C0011K2	chr9:141127790:AG:A	1,.,.	7	0.318	22	0.455	DB	533	28.3816	0	-1	7	0.318	55.53	-4.96	2.67	-1.09	0.694	-0.666	MQ	-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000446912|lincRNA||3/8|ENST00000446912.2:n.906+6241del|||||||||1||HGNC|34080|YES||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000540522|lincRNA||6/6|ENST00000540522.1:n.1175+3518del|||||||||1||HGNC|34080|||||	-1	0.138235	0.106121	2	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.111111,.,.	
-aff_only	fam_pl	C0011K3	chr9:141127790:AG:A	1,.,.	7	0.318	22	0.455	DB	533	28.3816	0	-1	7	0.318	55.53	-4.96	2.67	-1.09	0.694	-0.666	MQ	-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000446912|lincRNA||3/8|ENST00000446912.2:n.906+6241del|||||||||1||HGNC|34080|YES||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000540522|lincRNA||6/6|ENST00000540522.1:n.1175+3518del|||||||||1||HGNC|34080|||||	-1	0.138235	0.106121	2	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.204545,.,.	
-aff_only	fam_pl	C0011KA	chr9:141127790:AG:A	1,.,1	7	0.318	22	0.455	DB	533	28.3816	0	-1	7	0.318	55.53	-4.96	2.67	-1.09	0.694	-0.666	MQ	-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000446912|lincRNA||3/8|ENST00000446912.2:n.906+6241del|||||||||1||HGNC|34080|YES||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000540522|lincRNA||6/6|ENST00000540522.1:n.1175+3518del|||||||||1||HGNC|34080|||||	-1	0.138235	0.106121	2	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,45	0.146341,.,0.111111	
-aff_only	fam_pl	IP00FNP	chr9:141127790:AG:A	1,.,1	7	0.318	22	0.455	DB	533	28.3816	0	-1	7	0.318	55.53	-4.96	2.67	-1.09	0.694	-0.666	MQ	-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000446912|lincRNA||3/8|ENST00000446912.2:n.906+6241del|||||||||1||HGNC|34080|YES||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000540522|lincRNA||6/6|ENST00000540522.1:n.1175+3518del|||||||||1||HGNC|34080|||||	-1	0.138235	0.106121	2	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,42	0.263158,.,0.238095	
-aff_only	fam_pl	IP00FNW	chr9:141127790:AG:A	1,.,.	7	0.318	22	0.455	DB	533	28.3816	0	-1	7	0.318	55.53	-4.96	2.67	-1.09	0.694	-0.666	MQ	-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000446912|lincRNA||3/8|ENST00000446912.2:n.906+6241del|||||||||1||HGNC|34080|YES||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000540522|lincRNA||6/6|ENST00000540522.1:n.1175+3518del|||||||||1||HGNC|34080|||||	-1	0.138235	0.106121	2	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.266667,.,.	
-aff_only	fam_pl	IP00FNY	chr9:141127790:AG:A	1,.,.	7	0.318	22	0.455	DB	533	28.3816	0	-1	7	0.318	55.53	-4.96	2.67	-1.09	0.694	-0.666	MQ	-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000446912|lincRNA||3/8|ENST00000446912.2:n.906+6241del|||||||||1||HGNC|34080|YES||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000540522|lincRNA||6/6|ENST00000540522.1:n.1175+3518del|||||||||1||HGNC|34080|||||	-1	0.138235	0.106121	2	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			56,.,.	0.285714,.,.	
-aff_only	fam_pl	C0011JZ	chr10:38817730:G:A	1,.,.	7	0.318	22	-0.153	DB	4238	9.0714	0	-0.4667	7	0.318	53.89	0.051	3.46	-0.069	0.673	-2.741	MQ	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	-1	-1	-1	-1	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			222,.,.	0.157658,.,.	
-aff_only	fam_pl	C0011K2	chr10:38817730:G:A	1,.,.	7	0.318	22	-0.153	DB	4238	9.0714	0	-0.4667	7	0.318	53.89	0.051	3.46	-0.069	0.673	-2.741	MQ	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	-1	-1	-1	-1	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			214,.,.	0.186916,.,.	
-aff_only	fam_pl	C0011K3	chr10:38817730:G:A	1,.,.	7	0.318	22	-0.153	DB	4238	9.0714	0	-0.4667	7	0.318	53.89	0.051	3.46	-0.069	0.673	-2.741	MQ	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	-1	-1	-1	-1	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			561,.,.	0.0944742,.,.	
-aff_only	fam_pl	C0011KA	chr10:38817730:G:A	1,.,1	7	0.318	22	-0.153	DB	4238	9.0714	0	-0.4667	7	0.318	53.89	0.051	3.46	-0.069	0.673	-2.741	MQ	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	-1	-1	-1	-1	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			189,.,214	0.248677,.,0.186916	
-aff_only	fam_pl	IP00FNP	chr10:38817730:G:A	1,.,1	7	0.318	22	-0.153	DB	4238	9.0714	0	-0.4667	7	0.318	53.89	0.051	3.46	-0.069	0.673	-2.741	MQ	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	-1	-1	-1	-1	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			589,.,222	0.14601,.,0.157658	
-aff_only	fam_pl	IP00FNW	chr10:38817730:G:A	1,.,.	7	0.318	22	-0.153	DB	4238	9.0714	0	-0.4667	7	0.318	53.89	0.051	3.46	-0.069	0.673	-2.741	MQ	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	-1	-1	-1	-1	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			404,.,.	0.232673,.,.	
-aff_only	fam_pl	IP00FNY	chr10:38817730:G:A	1,.,.	7	0.318	22	-0.153	DB	4238	9.0714	0	-0.4667	7	0.318	53.89	0.051	3.46	-0.069	0.673	-2.741	MQ	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	-1	-1	-1	-1	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			424,.,.	0.200472,.,.	
-aff_only	fam_pl	C0011JZ	chr10:47085032:CTT:C	1,.,.	7	0.318	22	0	DB	842	3.0103	32.53	nan	7	0.318	60.1	0	23.04	0.246	0.644	3.51	MQRankSum	-|intron_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000374312|protein_coding||1/2|ENST00000374312.1:c.-215-485_-215-484del|||||||||1||HGNC|9329|YES|CCDS31193.1|||,-|upstream_gene_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000395716|protein_coding|||||||||||630|1||HGNC|9329||CCDS31193.1|||,-|intron_variant&non_coding_transcript_variant|MODIFIER|LINC00842|ENSG00000223477|Transcript|ENST00000503031|lincRNA||2/3|ENST00000503031.1:n.254-12055_254-12054del|||||||||-1||HGNC|44989|||||	-1	0.175121	0.183934	3	3	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			10,.,.	0.9,.,.	
-aff_only	fam_pl	C0011K2	chr10:47085032:CTT:C	1,.,.	7	0.318	22	0	DB	842	3.0103	32.53	nan	7	0.318	60.1	0	23.04	0.246	0.644	3.51	MQRankSum	-|intron_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000374312|protein_coding||1/2|ENST00000374312.1:c.-215-485_-215-484del|||||||||1||HGNC|9329|YES|CCDS31193.1|||,-|upstream_gene_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000395716|protein_coding|||||||||||630|1||HGNC|9329||CCDS31193.1|||,-|intron_variant&non_coding_transcript_variant|MODIFIER|LINC00842|ENSG00000223477|Transcript|ENST00000503031|lincRNA||2/3|ENST00000503031.1:n.254-12055_254-12054del|||||||||-1||HGNC|44989|||||	-1	0.175121	0.183934	3	3	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			12,.,.	0.75,.,.	
-aff_only	fam_pl	C0011K3	chr10:47085032:CTT:C	1,.,.	7	0.318	22	0	DB	842	3.0103	32.53	nan	7	0.318	60.1	0	23.04	0.246	0.644	3.51	MQRankSum	-|intron_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000374312|protein_coding||1/2|ENST00000374312.1:c.-215-485_-215-484del|||||||||1||HGNC|9329|YES|CCDS31193.1|||,-|upstream_gene_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000395716|protein_coding|||||||||||630|1||HGNC|9329||CCDS31193.1|||,-|intron_variant&non_coding_transcript_variant|MODIFIER|LINC00842|ENSG00000223477|Transcript|ENST00000503031|lincRNA||2/3|ENST00000503031.1:n.254-12055_254-12054del|||||||||-1||HGNC|44989|||||	-1	0.175121	0.183934	3	3	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			24,.,.	0.791667,.,.	
-aff_only	fam_pl	C0011KA	chr10:47085032:CTT:C	1,.,1	7	0.318	22	0	DB	842	3.0103	32.53	nan	7	0.318	60.1	0	23.04	0.246	0.644	3.51	MQRankSum	-|intron_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000374312|protein_coding||1/2|ENST00000374312.1:c.-215-485_-215-484del|||||||||1||HGNC|9329|YES|CCDS31193.1|||,-|upstream_gene_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000395716|protein_coding|||||||||||630|1||HGNC|9329||CCDS31193.1|||,-|intron_variant&non_coding_transcript_variant|MODIFIER|LINC00842|ENSG00000223477|Transcript|ENST00000503031|lincRNA||2/3|ENST00000503031.1:n.254-12055_254-12054del|||||||||-1||HGNC|44989|||||	-1	0.175121	0.183934	3	3	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			20,.,12	0.85,.,0.75	
-aff_only	fam_pl	IP00FNP	chr10:47085032:CTT:C	1,.,1	7	0.318	22	0	DB	842	3.0103	32.53	nan	7	0.318	60.1	0	23.04	0.246	0.644	3.51	MQRankSum	-|intron_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000374312|protein_coding||1/2|ENST00000374312.1:c.-215-485_-215-484del|||||||||1||HGNC|9329|YES|CCDS31193.1|||,-|upstream_gene_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000395716|protein_coding|||||||||||630|1||HGNC|9329||CCDS31193.1|||,-|intron_variant&non_coding_transcript_variant|MODIFIER|LINC00842|ENSG00000223477|Transcript|ENST00000503031|lincRNA||2/3|ENST00000503031.1:n.254-12055_254-12054del|||||||||-1||HGNC|44989|||||	-1	0.175121	0.183934	3	3	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			12,.,10	1,.,0.9	
-aff_only	fam_pl	IP00FNW	chr10:47085032:CTT:C	1,.,.	7	0.318	22	0	DB	842	3.0103	32.53	nan	7	0.318	60.1	0	23.04	0.246	0.644	3.51	MQRankSum	-|intron_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000374312|protein_coding||1/2|ENST00000374312.1:c.-215-485_-215-484del|||||||||1||HGNC|9329|YES|CCDS31193.1|||,-|upstream_gene_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000395716|protein_coding|||||||||||630|1||HGNC|9329||CCDS31193.1|||,-|intron_variant&non_coding_transcript_variant|MODIFIER|LINC00842|ENSG00000223477|Transcript|ENST00000503031|lincRNA||2/3|ENST00000503031.1:n.254-12055_254-12054del|||||||||-1||HGNC|44989|||||	-1	0.175121	0.183934	3	3	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			14,.,.	0.642857,.,.	
-aff_only	fam_pl	IP00FNY	chr10:47085032:CTT:C	1,.,.	7	0.318	22	0	DB	842	3.0103	32.53	nan	7	0.318	60.1	0	23.04	0.246	0.644	3.51	MQRankSum	-|intron_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000374312|protein_coding||1/2|ENST00000374312.1:c.-215-485_-215-484del|||||||||1||HGNC|9329|YES|CCDS31193.1|||,-|upstream_gene_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000395716|protein_coding|||||||||||630|1||HGNC|9329||CCDS31193.1|||,-|intron_variant&non_coding_transcript_variant|MODIFIER|LINC00842|ENSG00000223477|Transcript|ENST00000503031|lincRNA||2/3|ENST00000503031.1:n.254-12055_254-12054del|||||||||-1||HGNC|44989|||||	-1	0.175121	0.183934	3	3	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			8,.,.	1,.,.	
-aff_only	fam_pl	C0011JZ	chr10:51484678:C:A	1,.,.	7	0.318	22	0.757		407	9.0714	125.328	-0.4676	7	0.318	46.81	-1.797	4.38	-0.015	7.658	-140.8	SOR	A|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1301G>T|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.0755986	0.0770628	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.153846,.,.	
-aff_only	fam_pl	C0011K2	chr10:51484678:C:A	1,.,.	7	0.318	22	0.757		407	9.0714	125.328	-0.4676	7	0.318	46.81	-1.797	4.38	-0.015	7.658	-140.8	SOR	A|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1301G>T|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.0755986	0.0770628	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			49,.,.	0.142857,.,.	
-aff_only	fam_pl	C0011K3	chr10:51484678:C:A	1,.,.	7	0.318	22	0.757		407	9.0714	125.328	-0.4676	7	0.318	46.81	-1.797	4.38	-0.015	7.658	-140.8	SOR	A|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1301G>T|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.0755986	0.0770628	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,.	0.130435,.,.	
-aff_only	fam_pl	C0011KA	chr10:51484678:C:A	1,.,1	7	0.318	22	0.757		407	9.0714	125.328	-0.4676	7	0.318	46.81	-1.797	4.38	-0.015	7.658	-140.8	SOR	A|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1301G>T|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.0755986	0.0770628	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			22,.,49	0.136364,.,0.142857	
-aff_only	fam_pl	IP00FNP	chr10:51484678:C:A	1,.,1	7	0.318	22	0.757		407	9.0714	125.328	-0.4676	7	0.318	46.81	-1.797	4.38	-0.015	7.658	-140.8	SOR	A|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1301G>T|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.0755986	0.0770628	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,39	0.25641,.,0.153846	
-aff_only	fam_pl	IP00FNW	chr10:51484678:C:A	1,.,.	7	0.318	22	0.757		407	9.0714	125.328	-0.4676	7	0.318	46.81	-1.797	4.38	-0.015	7.658	-140.8	SOR	A|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1301G>T|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.0755986	0.0770628	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.181818,.,.	
-aff_only	fam_pl	IP00FNY	chr10:51484678:C:A	1,.,.	7	0.318	22	0.757		407	9.0714	125.328	-0.4676	7	0.318	46.81	-1.797	4.38	-0.015	7.658	-140.8	SOR	A|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1301G>T|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.0755986	0.0770628	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,.	0.145833,.,.	
-aff_only	fam_pl	C0011JZ	chr10:51484680:C:T	1,.,.	7	0.318	22	1.26		406	9.0714	128.545	-0.4672	7	0.318	46.76	-1.739	4.41	0.194	7.701	-146.4	SOR	T|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1299G>A|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.0797723	0.0813679	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.153846,.,.	
-aff_only	fam_pl	C0011K2	chr10:51484680:C:T	1,.,.	7	0.318	22	1.26		406	9.0714	128.545	-0.4672	7	0.318	46.76	-1.739	4.41	0.194	7.701	-146.4	SOR	T|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1299G>A|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.0797723	0.0813679	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			49,.,.	0.142857,.,.	
-aff_only	fam_pl	C0011K3	chr10:51484680:C:T	1,.,.	7	0.318	22	1.26		406	9.0714	128.545	-0.4672	7	0.318	46.76	-1.739	4.41	0.194	7.701	-146.4	SOR	T|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1299G>A|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.0797723	0.0813679	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.133333,.,.	
-aff_only	fam_pl	C0011KA	chr10:51484680:C:T	1,.,1	7	0.318	22	1.26		406	9.0714	128.545	-0.4672	7	0.318	46.76	-1.739	4.41	0.194	7.701	-146.4	SOR	T|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1299G>A|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.0797723	0.0813679	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			22,.,49	0.136364,.,0.142857	
-aff_only	fam_pl	IP00FNP	chr10:51484680:C:T	1,.,1	7	0.318	22	1.26		406	9.0714	128.545	-0.4672	7	0.318	46.76	-1.739	4.41	0.194	7.701	-146.4	SOR	T|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1299G>A|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.0797723	0.0813679	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,39	0.25641,.,0.153846	
-aff_only	fam_pl	IP00FNW	chr10:51484680:C:T	1,.,.	7	0.318	22	1.26		406	9.0714	128.545	-0.4672	7	0.318	46.76	-1.739	4.41	0.194	7.701	-146.4	SOR	T|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1299G>A|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.0797723	0.0813679	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.212121,.,.	
-aff_only	fam_pl	IP00FNY	chr10:51484680:C:T	1,.,.	7	0.318	22	1.26		406	9.0714	128.545	-0.4672	7	0.318	46.76	-1.739	4.41	0.194	7.701	-146.4	SOR	T|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1299G>A|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.0797723	0.0813679	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.148936,.,.	
-aff_only	fam_pl	C0011JZ	chr10:51484776:TTA:T	1,.,.	7	0.318	22	0	DB	370	9.0714	52.172	-0.4667	7	0.318	35.31	-0.438	5.86	-0.742	3.021	6.76	FS	-|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1201_223+1202del|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.269477	0.274031	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.189189,.,.	
-aff_only	fam_pl	C0011K2	chr10:51484776:TTA:T	1,.,.	7	0.318	22	0	DB	370	9.0714	52.172	-0.4667	7	0.318	35.31	-0.438	5.86	-0.742	3.021	6.76	FS	-|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1201_223+1202del|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.269477	0.274031	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.333333,.,.	
-aff_only	fam_pl	C0011K3	chr10:51484776:TTA:T	1,.,.	7	0.318	22	0	DB	370	9.0714	52.172	-0.4667	7	0.318	35.31	-0.438	5.86	-0.742	3.021	6.76	FS	-|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1201_223+1202del|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.269477	0.274031	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			57,.,.	0.157895,.,.	
-aff_only	fam_pl	C0011KA	chr10:51484776:TTA:T	1,.,1	7	0.318	22	0	DB	370	9.0714	52.172	-0.4667	7	0.318	35.31	-0.438	5.86	-0.742	3.021	6.76	FS	-|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1201_223+1202del|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.269477	0.274031	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			24,.,42	0.208333,.,0.333333	
-aff_only	fam_pl	IP00FNP	chr10:51484776:TTA:T	1,.,1	7	0.318	22	0	DB	370	9.0714	52.172	-0.4667	7	0.318	35.31	-0.438	5.86	-0.742	3.021	6.76	FS	-|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1201_223+1202del|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.269477	0.274031	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			23,.,37	0.217391,.,0.189189	
-aff_only	fam_pl	IP00FNW	chr10:51484776:TTA:T	1,.,.	7	0.318	22	0	DB	370	9.0714	52.172	-0.4667	7	0.318	35.31	-0.438	5.86	-0.742	3.021	6.76	FS	-|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1201_223+1202del|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.269477	0.274031	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			21,.,.	0.142857,.,.	
-aff_only	fam_pl	IP00FNY	chr10:51484776:TTA:T	1,.,.	7	0.318	22	0	DB	370	9.0714	52.172	-0.4667	7	0.318	35.31	-0.438	5.86	-0.742	3.021	6.76	FS	-|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1201_223+1202del|||||||||-1||HGNC|23465|YES|CCDS41524.1|||	-1	0.269477	0.274031	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.142857,.,.	
-aff_only	fam_pl	C0011JZ	chr11:134629969:A:C	1,.,.	7	0.318	22	-0.254	DB	587	9.0714	38.555	-0.5714	8	0.364	50.54	0.22	10.67	-1.48	1.328	-12.21	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-999A>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.389133	0.396508	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,.	0.352941,.,.	
-aff_only	fam_pl	C0011K2	chr11:134629969:A:C	1,.,.	7	0.318	22	-0.254	DB	587	9.0714	38.555	-0.5714	8	0.364	50.54	0.22	10.67	-1.48	1.328	-12.21	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-999A>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.389133	0.396508	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.162791,.,.	
-aff_only	fam_pl	C0011K3	chr11:134629969:A:C	1,.,.	7	0.318	22	-0.254	DB	587	9.0714	38.555	-0.5714	8	0.364	50.54	0.22	10.67	-1.48	1.328	-12.21	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-999A>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.389133	0.396508	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,.	0.152174,.,.	
-aff_only	fam_pl	C0011KA	chr11:134629969:A:C	1,.,1	7	0.318	22	-0.254	DB	587	9.0714	38.555	-0.5714	8	0.364	50.54	0.22	10.67	-1.48	1.328	-12.21	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-999A>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.389133	0.396508	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,43	0.25,.,0.162791	
-aff_only	fam_pl	IP00FNP	chr11:134629969:A:C	1,.,1	7	0.318	22	-0.254	DB	587	9.0714	38.555	-0.5714	8	0.364	50.54	0.22	10.67	-1.48	1.328	-12.21	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-999A>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.389133	0.396508	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			61,.,34	0.180328,.,0.352941	
-aff_only	fam_pl	IP00FNW	chr11:134629969:A:C	1,.,.	7	0.318	22	-0.254	DB	587	9.0714	38.555	-0.5714	8	0.364	50.54	0.22	10.67	-1.48	1.328	-12.21	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-999A>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.389133	0.396508	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			83,.,.	0.493976,.,.	
-aff_only	fam_pl	IP00FNY	chr11:134629969:A:C	1,.,.	7	0.318	22	-0.254	DB	587	9.0714	38.555	-0.5714	8	0.364	50.54	0.22	10.67	-1.48	1.328	-12.21	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-999A>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.389133	0.396508	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			97,.,.	0.515464,.,.	
-aff_only	fam_pl	C0011JZ	chr11:134629972:A:C	1,.,.	7	0.318	22	-0.511	DB	570	11.8014	24.473	-0.6923	8	0.364	50.58	0.169	10.09	-0.579	1.466	-5.583	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-996A>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.411614	0.424807	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.342857,.,.	
-aff_only	fam_pl	C0011K2	chr11:134629972:A:C	1,.,.	7	0.318	22	-0.511	DB	570	11.8014	24.473	-0.6923	8	0.364	50.58	0.169	10.09	-0.579	1.466	-5.583	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-996A>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.411614	0.424807	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.162791,.,.	
-aff_only	fam_pl	C0011K3	chr11:134629972:A:C	1,.,.	7	0.318	22	-0.511	DB	570	11.8014	24.473	-0.6923	8	0.364	50.58	0.169	10.09	-0.579	1.466	-5.583	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-996A>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.411614	0.424807	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.139535,.,.	
-aff_only	fam_pl	C0011KA	chr11:134629972:A:C	1,.,1	7	0.318	22	-0.511	DB	570	11.8014	24.473	-0.6923	8	0.364	50.58	0.169	10.09	-0.579	1.466	-5.583	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-996A>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.411614	0.424807	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,43	0.25,.,0.162791	
-aff_only	fam_pl	IP00FNP	chr11:134629972:A:C	1,.,1	7	0.318	22	-0.511	DB	570	11.8014	24.473	-0.6923	8	0.364	50.58	0.169	10.09	-0.579	1.466	-5.583	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-996A>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.411614	0.424807	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			59,.,35	0.135593,.,0.342857	
-aff_only	fam_pl	IP00FNW	chr11:134629972:A:C	1,.,.	7	0.318	22	-0.511	DB	570	11.8014	24.473	-0.6923	8	0.364	50.58	0.169	10.09	-0.579	1.466	-5.583	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-996A>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.411614	0.424807	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			79,.,.	0.493671,.,.	
-aff_only	fam_pl	IP00FNY	chr11:134629972:A:C	1,.,.	7	0.318	22	-0.511	DB	570	11.8014	24.473	-0.6923	8	0.364	50.58	0.169	10.09	-0.579	1.466	-5.583	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-996A>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.411614	0.424807	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			96,.,.	0.479167,.,.	
-aff_only	fam_pl	C0011JZ	chr12:334342:C:T	1,.,.	7	0.318	22	-1.139	DB	491	9.0714	1.344	-0.4667	7	0.318	60	0	14.58	0.099	0.597	23.72	MQRankSum	T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000343164|protein_coding||9/14|ENST00000343164.4:c.1061-663G>A|||||||||-1||HGNC|11046|YES|CCDS8502.1|||,T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000445055|protein_coding||7/12|ENST00000445055.2:c.785-663G>A|||||||||-1||HGNC|11046||CCDS53729.1|||,T|upstream_gene_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000539668|processed_transcript|||||||||||745|-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542379|processed_transcript||2/2|ENST00000542379.1:n.220-1942G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542947|retained_intron||2/2|ENST00000542947.1:n.445-663G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000543722|retained_intron||1/2|ENST00000543722.1:n.291-663G>A|||||||||-1||HGNC|11046|||||	-1	0.301969	0.283645	986	555	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.702703,.,.	
-aff_only	fam_pl	C0011K2	chr12:334342:C:T	1,.,.	7	0.318	22	-1.139	DB	491	9.0714	1.344	-0.4667	7	0.318	60	0	14.58	0.099	0.597	23.72	MQRankSum	T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000343164|protein_coding||9/14|ENST00000343164.4:c.1061-663G>A|||||||||-1||HGNC|11046|YES|CCDS8502.1|||,T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000445055|protein_coding||7/12|ENST00000445055.2:c.785-663G>A|||||||||-1||HGNC|11046||CCDS53729.1|||,T|upstream_gene_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000539668|processed_transcript|||||||||||745|-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542379|processed_transcript||2/2|ENST00000542379.1:n.220-1942G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542947|retained_intron||2/2|ENST00000542947.1:n.445-663G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000543722|retained_intron||1/2|ENST00000543722.1:n.291-663G>A|||||||||-1||HGNC|11046|||||	-1	0.301969	0.283645	986	555	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,.	0.480769,.,.	
-aff_only	fam_pl	C0011K3	chr12:334342:C:T	1,.,.	7	0.318	22	-1.139	DB	491	9.0714	1.344	-0.4667	7	0.318	60	0	14.58	0.099	0.597	23.72	MQRankSum	T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000343164|protein_coding||9/14|ENST00000343164.4:c.1061-663G>A|||||||||-1||HGNC|11046|YES|CCDS8502.1|||,T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000445055|protein_coding||7/12|ENST00000445055.2:c.785-663G>A|||||||||-1||HGNC|11046||CCDS53729.1|||,T|upstream_gene_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000539668|processed_transcript|||||||||||745|-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542379|processed_transcript||2/2|ENST00000542379.1:n.220-1942G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542947|retained_intron||2/2|ENST00000542947.1:n.445-663G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000543722|retained_intron||1/2|ENST00000543722.1:n.291-663G>A|||||||||-1||HGNC|11046|||||	-1	0.301969	0.283645	986	555	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.604651,.,.	
-aff_only	fam_pl	C0011KA	chr12:334342:C:T	1,.,1	7	0.318	22	-1.139	DB	491	9.0714	1.344	-0.4667	7	0.318	60	0	14.58	0.099	0.597	23.72	MQRankSum	T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000343164|protein_coding||9/14|ENST00000343164.4:c.1061-663G>A|||||||||-1||HGNC|11046|YES|CCDS8502.1|||,T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000445055|protein_coding||7/12|ENST00000445055.2:c.785-663G>A|||||||||-1||HGNC|11046||CCDS53729.1|||,T|upstream_gene_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000539668|processed_transcript|||||||||||745|-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542379|processed_transcript||2/2|ENST00000542379.1:n.220-1942G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542947|retained_intron||2/2|ENST00000542947.1:n.445-663G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000543722|retained_intron||1/2|ENST00000543722.1:n.291-663G>A|||||||||-1||HGNC|11046|||||	-1	0.301969	0.283645	986	555	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,52	0.414634,.,0.480769	
-aff_only	fam_pl	IP00FNP	chr12:334342:C:T	1,.,1	7	0.318	22	-1.139	DB	491	9.0714	1.344	-0.4667	7	0.318	60	0	14.58	0.099	0.597	23.72	MQRankSum	T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000343164|protein_coding||9/14|ENST00000343164.4:c.1061-663G>A|||||||||-1||HGNC|11046|YES|CCDS8502.1|||,T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000445055|protein_coding||7/12|ENST00000445055.2:c.785-663G>A|||||||||-1||HGNC|11046||CCDS53729.1|||,T|upstream_gene_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000539668|processed_transcript|||||||||||745|-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542379|processed_transcript||2/2|ENST00000542379.1:n.220-1942G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542947|retained_intron||2/2|ENST00000542947.1:n.445-663G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000543722|retained_intron||1/2|ENST00000543722.1:n.291-663G>A|||||||||-1||HGNC|11046|||||	-1	0.301969	0.283645	986	555	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,37	0.480769,.,0.702703	
-aff_only	fam_pl	IP00FNW	chr12:334342:C:T	1,.,.	7	0.318	22	-1.139	DB	491	9.0714	1.344	-0.4667	7	0.318	60	0	14.58	0.099	0.597	23.72	MQRankSum	T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000343164|protein_coding||9/14|ENST00000343164.4:c.1061-663G>A|||||||||-1||HGNC|11046|YES|CCDS8502.1|||,T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000445055|protein_coding||7/12|ENST00000445055.2:c.785-663G>A|||||||||-1||HGNC|11046||CCDS53729.1|||,T|upstream_gene_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000539668|processed_transcript|||||||||||745|-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542379|processed_transcript||2/2|ENST00000542379.1:n.220-1942G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542947|retained_intron||2/2|ENST00000542947.1:n.445-663G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000543722|retained_intron||1/2|ENST00000543722.1:n.291-663G>A|||||||||-1||HGNC|11046|||||	-1	0.301969	0.283645	986	555	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.390244,.,.	
-aff_only	fam_pl	IP00FNY	chr12:334342:C:T	1,.,.	7	0.318	22	-1.139	DB	491	9.0714	1.344	-0.4667	7	0.318	60	0	14.58	0.099	0.597	23.72	MQRankSum	T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000343164|protein_coding||9/14|ENST00000343164.4:c.1061-663G>A|||||||||-1||HGNC|11046|YES|CCDS8502.1|||,T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000445055|protein_coding||7/12|ENST00000445055.2:c.785-663G>A|||||||||-1||HGNC|11046||CCDS53729.1|||,T|upstream_gene_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000539668|processed_transcript|||||||||||745|-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542379|processed_transcript||2/2|ENST00000542379.1:n.220-1942G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542947|retained_intron||2/2|ENST00000542947.1:n.445-663G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000543722|retained_intron||1/2|ENST00000543722.1:n.291-663G>A|||||||||-1||HGNC|11046|||||	-1	0.301969	0.283645	986	555	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			59,.,.	0.59322,.,.	
-aff_only	fam_pl	C0011JZ	chr12:2033347:C:T	1,.,.	7	0.318	22	2.3	DB	447	9.0714	3.976	-0.4667	7	0.318	51.96	-2.758	13.16	0.482	0.918	-2.23	MQ	T|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||1314|1||Clone_based_vega_gene||YES||||	-1	0.481677	0.556349	2670	2075	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.314286,.,.	
-aff_only	fam_pl	C0011K2	chr12:2033347:C:T	1,.,.	7	0.318	22	2.3	DB	447	9.0714	3.976	-0.4667	7	0.318	51.96	-2.758	13.16	0.482	0.918	-2.23	MQ	T|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||1314|1||Clone_based_vega_gene||YES||||	-1	0.481677	0.556349	2670	2075	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.489362,.,.	
-aff_only	fam_pl	C0011K3	chr12:2033347:C:T	1,.,.	7	0.318	22	2.3	DB	447	9.0714	3.976	-0.4667	7	0.318	51.96	-2.758	13.16	0.482	0.918	-2.23	MQ	T|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||1314|1||Clone_based_vega_gene||YES||||	-1	0.481677	0.556349	2670	2075	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.536585,.,.	
-aff_only	fam_pl	C0011KA	chr12:2033347:C:T	1,.,1	7	0.318	22	2.3	DB	447	9.0714	3.976	-0.4667	7	0.318	51.96	-2.758	13.16	0.482	0.918	-2.23	MQ	T|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||1314|1||Clone_based_vega_gene||YES||||	-1	0.481677	0.556349	2670	2075	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			24,.,47	0.583333,.,0.489362	
-aff_only	fam_pl	IP00FNP	chr12:2033347:C:T	1,.,1	7	0.318	22	2.3	DB	447	9.0714	3.976	-0.4667	7	0.318	51.96	-2.758	13.16	0.482	0.918	-2.23	MQ	T|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||1314|1||Clone_based_vega_gene||YES||||	-1	0.481677	0.556349	2670	2075	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,35	0.35,.,0.314286	
-aff_only	fam_pl	IP00FNW	chr12:2033347:C:T	1,.,.	7	0.318	22	2.3	DB	447	9.0714	3.976	-0.4667	7	0.318	51.96	-2.758	13.16	0.482	0.918	-2.23	MQ	T|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||1314|1||Clone_based_vega_gene||YES||||	-1	0.481677	0.556349	2670	2075	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.5,.,.	
-aff_only	fam_pl	IP00FNY	chr12:2033347:C:T	1,.,.	7	0.318	22	2.3	DB	447	9.0714	3.976	-0.4667	7	0.318	51.96	-2.758	13.16	0.482	0.918	-2.23	MQ	T|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||1314|1||Clone_based_vega_gene||YES||||	-1	0.481677	0.556349	2670	2075	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,.	0.576923,.,.	
-aff_only	fam_pl	C0011JZ	chr12:2036141:T:C	1,.,.	7	0.318	22	-2.006	DB	477	9.0714	24.678	-0.4667	7	0.318	60	0	12.12	0.49	0.465	16.93	MQRankSum	C|downstream_gene_variant|MODIFIER|LINC00940|ENSG00000235049|Transcript|ENST00000418006|lincRNA|||||||||||2227|-1||HGNC|48634|YES||||,C|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||4108|1||Clone_based_vega_gene||YES||||	-1	0.469936	0.558798	2687	2135	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.514286,.,.	
-aff_only	fam_pl	C0011K2	chr12:2036141:T:C	1,.,.	7	0.318	22	-2.006	DB	477	9.0714	24.678	-0.4667	7	0.318	60	0	12.12	0.49	0.465	16.93	MQRankSum	C|downstream_gene_variant|MODIFIER|LINC00940|ENSG00000235049|Transcript|ENST00000418006|lincRNA|||||||||||2227|-1||HGNC|48634|YES||||,C|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||4108|1||Clone_based_vega_gene||YES||||	-1	0.469936	0.558798	2687	2135	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			56,.,.	0.535714,.,.	
-aff_only	fam_pl	C0011K3	chr12:2036141:T:C	1,.,.	7	0.318	22	-2.006	DB	477	9.0714	24.678	-0.4667	7	0.318	60	0	12.12	0.49	0.465	16.93	MQRankSum	C|downstream_gene_variant|MODIFIER|LINC00940|ENSG00000235049|Transcript|ENST00000418006|lincRNA|||||||||||2227|-1||HGNC|48634|YES||||,C|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||4108|1||Clone_based_vega_gene||YES||||	-1	0.469936	0.558798	2687	2135	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,.	0.325,.,.	
-aff_only	fam_pl	C0011KA	chr12:2036141:T:C	1,.,1	7	0.318	22	-2.006	DB	477	9.0714	24.678	-0.4667	7	0.318	60	0	12.12	0.49	0.465	16.93	MQRankSum	C|downstream_gene_variant|MODIFIER|LINC00940|ENSG00000235049|Transcript|ENST00000418006|lincRNA|||||||||||2227|-1||HGNC|48634|YES||||,C|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||4108|1||Clone_based_vega_gene||YES||||	-1	0.469936	0.558798	2687	2135	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,56	0.416667,.,0.535714	
-aff_only	fam_pl	IP00FNP	chr12:2036141:T:C	1,.,1	7	0.318	22	-2.006	DB	477	9.0714	24.678	-0.4667	7	0.318	60	0	12.12	0.49	0.465	16.93	MQRankSum	C|downstream_gene_variant|MODIFIER|LINC00940|ENSG00000235049|Transcript|ENST00000418006|lincRNA|||||||||||2227|-1||HGNC|48634|YES||||,C|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||4108|1||Clone_based_vega_gene||YES||||	-1	0.469936	0.558798	2687	2135	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,35	0.52,.,0.514286	
-aff_only	fam_pl	IP00FNW	chr12:2036141:T:C	1,.,.	7	0.318	22	-2.006	DB	477	9.0714	24.678	-0.4667	7	0.318	60	0	12.12	0.49	0.465	16.93	MQRankSum	C|downstream_gene_variant|MODIFIER|LINC00940|ENSG00000235049|Transcript|ENST00000418006|lincRNA|||||||||||2227|-1||HGNC|48634|YES||||,C|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||4108|1||Clone_based_vega_gene||YES||||	-1	0.469936	0.558798	2687	2135	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,.	0.45,.,.	
-aff_only	fam_pl	IP00FNY	chr12:2036141:T:C	1,.,.	7	0.318	22	-2.006	DB	477	9.0714	24.678	-0.4667	7	0.318	60	0	12.12	0.49	0.465	16.93	MQRankSum	C|downstream_gene_variant|MODIFIER|LINC00940|ENSG00000235049|Transcript|ENST00000418006|lincRNA|||||||||||2227|-1||HGNC|48634|YES||||,C|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||4108|1||Clone_based_vega_gene||YES||||	-1	0.469936	0.558798	2687	2135	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			64,.,.	0.515625,.,.	
-aff_only	fam_pl	C0011JZ	chr12:5569271:C:T	1,.,.	7	0.318	22	0	DB	466	9.0714	16.139	-0.4667	7	0.318	60	0	14.34	-0.783	0.967	21.94	MQRankSum	T|intron_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000423158|protein_coding||1/1|ENST00000423158.3:c.18+27763C>T|||||||||1||HGNC|8023|YES|CCDS44806.1|||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000535299|processed_transcript||1/4|ENST00000535299.1:n.231+27763C>T|||||||||1||HGNC|8023|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000543548|processed_transcript||1/1|ENST00000543548.1:n.208+26773C>T|||||||||1||HGNC|8023|||||	-1	0.617836	0.555637	4097	2064	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,.	0.558824,.,.	
-aff_only	fam_pl	C0011K2	chr12:5569271:C:T	1,.,.	7	0.318	22	0	DB	466	9.0714	16.139	-0.4667	7	0.318	60	0	14.34	-0.783	0.967	21.94	MQRankSum	T|intron_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000423158|protein_coding||1/1|ENST00000423158.3:c.18+27763C>T|||||||||1||HGNC|8023|YES|CCDS44806.1|||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000535299|processed_transcript||1/4|ENST00000535299.1:n.231+27763C>T|||||||||1||HGNC|8023|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000543548|processed_transcript||1/1|ENST00000543548.1:n.208+26773C>T|||||||||1||HGNC|8023|||||	-1	0.617836	0.555637	4097	2064	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,.	0.479167,.,.	
-aff_only	fam_pl	C0011K3	chr12:5569271:C:T	1,.,.	7	0.318	22	0	DB	466	9.0714	16.139	-0.4667	7	0.318	60	0	14.34	-0.783	0.967	21.94	MQRankSum	T|intron_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000423158|protein_coding||1/1|ENST00000423158.3:c.18+27763C>T|||||||||1||HGNC|8023|YES|CCDS44806.1|||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000535299|processed_transcript||1/4|ENST00000535299.1:n.231+27763C>T|||||||||1||HGNC|8023|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000543548|processed_transcript||1/1|ENST00000543548.1:n.208+26773C>T|||||||||1||HGNC|8023|||||	-1	0.617836	0.555637	4097	2064	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,.	0.625,.,.	
-aff_only	fam_pl	C0011KA	chr12:5569271:C:T	1,.,1	7	0.318	22	0	DB	466	9.0714	16.139	-0.4667	7	0.318	60	0	14.34	-0.783	0.967	21.94	MQRankSum	T|intron_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000423158|protein_coding||1/1|ENST00000423158.3:c.18+27763C>T|||||||||1||HGNC|8023|YES|CCDS44806.1|||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000535299|processed_transcript||1/4|ENST00000535299.1:n.231+27763C>T|||||||||1||HGNC|8023|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000543548|processed_transcript||1/1|ENST00000543548.1:n.208+26773C>T|||||||||1||HGNC|8023|||||	-1	0.617836	0.555637	4097	2064	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			23,.,48	0.347826,.,0.479167	
-aff_only	fam_pl	IP00FNP	chr12:5569271:C:T	1,.,1	7	0.318	22	0	DB	466	9.0714	16.139	-0.4667	7	0.318	60	0	14.34	-0.783	0.967	21.94	MQRankSum	T|intron_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000423158|protein_coding||1/1|ENST00000423158.3:c.18+27763C>T|||||||||1||HGNC|8023|YES|CCDS44806.1|||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000535299|processed_transcript||1/4|ENST00000535299.1:n.231+27763C>T|||||||||1||HGNC|8023|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000543548|processed_transcript||1/1|ENST00000543548.1:n.208+26773C>T|||||||||1||HGNC|8023|||||	-1	0.617836	0.555637	4097	2064	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,34	0.5,.,0.558824	
-aff_only	fam_pl	IP00FNW	chr12:5569271:C:T	1,.,.	7	0.318	22	0	DB	466	9.0714	16.139	-0.4667	7	0.318	60	0	14.34	-0.783	0.967	21.94	MQRankSum	T|intron_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000423158|protein_coding||1/1|ENST00000423158.3:c.18+27763C>T|||||||||1||HGNC|8023|YES|CCDS44806.1|||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000535299|processed_transcript||1/4|ENST00000535299.1:n.231+27763C>T|||||||||1||HGNC|8023|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000543548|processed_transcript||1/1|ENST00000543548.1:n.208+26773C>T|||||||||1||HGNC|8023|||||	-1	0.617836	0.555637	4097	2064	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			54,.,.	0.5,.,.	
-aff_only	fam_pl	IP00FNY	chr12:5569271:C:T	1,.,.	7	0.318	22	0	DB	466	9.0714	16.139	-0.4667	7	0.318	60	0	14.34	-0.783	0.967	21.94	MQRankSum	T|intron_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000423158|protein_coding||1/1|ENST00000423158.3:c.18+27763C>T|||||||||1||HGNC|8023|YES|CCDS44806.1|||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000535299|processed_transcript||1/4|ENST00000535299.1:n.231+27763C>T|||||||||1||HGNC|8023|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000543548|processed_transcript||1/1|ENST00000543548.1:n.208+26773C>T|||||||||1||HGNC|8023|||||	-1	0.617836	0.555637	4097	2064	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			68,.,.	0.544118,.,.	
-aff_only	fam_pl	C0011JZ	chr12:6744864:G:C	1,.,.	7	0.318	22	-0.314	DB	446	9.0714	10.015	-0.4667	7	0.318	60	0	11.9	-0.191	0.373	23.73	MQRankSum	C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000229243|protein_coding|||||||||||2377|-1||HGNC|17195|YES|CCDS8554.1|||,C|intron_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000329858|protein_coding||1/1|ENST00000329858.4:c.-217+209C>G|||||||||-1||HGNC|13307|YES|CCDS8553.1|||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000414226|protein_coding|||||||||||2462|-1||HGNC|17195|||||,C|upstream_gene_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000431922|protein_coding|||||||||||4049|-1||HGNC|13307||CCDS8553.1|||,C|intron_variant&non_coding_transcript_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000540335|processed_transcript||1/2|ENST00000540335.1:n.54+209C>G|||||||||-1||HGNC|13307|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000540513|processed_transcript|||||||||||2377|-1||HGNC|17195|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000542357|processed_transcript|||||||||||2812|-1||HGNC|17195|||||	-1	0.536383	0.568792	3155	2202	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			24,.,.	0.291667,.,.	
-aff_only	fam_pl	C0011K2	chr12:6744864:G:C	1,.,.	7	0.318	22	-0.314	DB	446	9.0714	10.015	-0.4667	7	0.318	60	0	11.9	-0.191	0.373	23.73	MQRankSum	C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000229243|protein_coding|||||||||||2377|-1||HGNC|17195|YES|CCDS8554.1|||,C|intron_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000329858|protein_coding||1/1|ENST00000329858.4:c.-217+209C>G|||||||||-1||HGNC|13307|YES|CCDS8553.1|||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000414226|protein_coding|||||||||||2462|-1||HGNC|17195|||||,C|upstream_gene_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000431922|protein_coding|||||||||||4049|-1||HGNC|13307||CCDS8553.1|||,C|intron_variant&non_coding_transcript_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000540335|processed_transcript||1/2|ENST00000540335.1:n.54+209C>G|||||||||-1||HGNC|13307|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000540513|processed_transcript|||||||||||2377|-1||HGNC|17195|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000542357|processed_transcript|||||||||||2812|-1||HGNC|17195|||||	-1	0.536383	0.568792	3155	2202	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,.	0.586957,.,.	
-aff_only	fam_pl	C0011K3	chr12:6744864:G:C	1,.,.	7	0.318	22	-0.314	DB	446	9.0714	10.015	-0.4667	7	0.318	60	0	11.9	-0.191	0.373	23.73	MQRankSum	C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000229243|protein_coding|||||||||||2377|-1||HGNC|17195|YES|CCDS8554.1|||,C|intron_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000329858|protein_coding||1/1|ENST00000329858.4:c.-217+209C>G|||||||||-1||HGNC|13307|YES|CCDS8553.1|||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000414226|protein_coding|||||||||||2462|-1||HGNC|17195|||||,C|upstream_gene_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000431922|protein_coding|||||||||||4049|-1||HGNC|13307||CCDS8553.1|||,C|intron_variant&non_coding_transcript_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000540335|processed_transcript||1/2|ENST00000540335.1:n.54+209C>G|||||||||-1||HGNC|13307|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000540513|processed_transcript|||||||||||2377|-1||HGNC|17195|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000542357|processed_transcript|||||||||||2812|-1||HGNC|17195|||||	-1	0.536383	0.568792	3155	2202	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.425532,.,.	
-aff_only	fam_pl	C0011KA	chr12:6744864:G:C	1,.,1	7	0.318	22	-0.314	DB	446	9.0714	10.015	-0.4667	7	0.318	60	0	11.9	-0.191	0.373	23.73	MQRankSum	C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000229243|protein_coding|||||||||||2377|-1||HGNC|17195|YES|CCDS8554.1|||,C|intron_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000329858|protein_coding||1/1|ENST00000329858.4:c.-217+209C>G|||||||||-1||HGNC|13307|YES|CCDS8553.1|||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000414226|protein_coding|||||||||||2462|-1||HGNC|17195|||||,C|upstream_gene_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000431922|protein_coding|||||||||||4049|-1||HGNC|13307||CCDS8553.1|||,C|intron_variant&non_coding_transcript_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000540335|processed_transcript||1/2|ENST00000540335.1:n.54+209C>G|||||||||-1||HGNC|13307|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000540513|processed_transcript|||||||||||2377|-1||HGNC|17195|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000542357|processed_transcript|||||||||||2812|-1||HGNC|17195|||||	-1	0.536383	0.568792	3155	2202	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,46	0.594595,.,0.586957	
-aff_only	fam_pl	IP00FNP	chr12:6744864:G:C	1,.,1	7	0.318	22	-0.314	DB	446	9.0714	10.015	-0.4667	7	0.318	60	0	11.9	-0.191	0.373	23.73	MQRankSum	C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000229243|protein_coding|||||||||||2377|-1||HGNC|17195|YES|CCDS8554.1|||,C|intron_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000329858|protein_coding||1/1|ENST00000329858.4:c.-217+209C>G|||||||||-1||HGNC|13307|YES|CCDS8553.1|||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000414226|protein_coding|||||||||||2462|-1||HGNC|17195|||||,C|upstream_gene_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000431922|protein_coding|||||||||||4049|-1||HGNC|13307||CCDS8553.1|||,C|intron_variant&non_coding_transcript_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000540335|processed_transcript||1/2|ENST00000540335.1:n.54+209C>G|||||||||-1||HGNC|13307|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000540513|processed_transcript|||||||||||2377|-1||HGNC|17195|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000542357|processed_transcript|||||||||||2812|-1||HGNC|17195|||||	-1	0.536383	0.568792	3155	2202	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,24	0.42,.,0.291667	
-aff_only	fam_pl	IP00FNW	chr12:6744864:G:C	1,.,.	7	0.318	22	-0.314	DB	446	9.0714	10.015	-0.4667	7	0.318	60	0	11.9	-0.191	0.373	23.73	MQRankSum	C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000229243|protein_coding|||||||||||2377|-1||HGNC|17195|YES|CCDS8554.1|||,C|intron_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000329858|protein_coding||1/1|ENST00000329858.4:c.-217+209C>G|||||||||-1||HGNC|13307|YES|CCDS8553.1|||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000414226|protein_coding|||||||||||2462|-1||HGNC|17195|||||,C|upstream_gene_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000431922|protein_coding|||||||||||4049|-1||HGNC|13307||CCDS8553.1|||,C|intron_variant&non_coding_transcript_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000540335|processed_transcript||1/2|ENST00000540335.1:n.54+209C>G|||||||||-1||HGNC|13307|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000540513|processed_transcript|||||||||||2377|-1||HGNC|17195|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000542357|processed_transcript|||||||||||2812|-1||HGNC|17195|||||	-1	0.536383	0.568792	3155	2202	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,.	0.34375,.,.	
-aff_only	fam_pl	IP00FNY	chr12:6744864:G:C	1,.,.	7	0.318	22	-0.314	DB	446	9.0714	10.015	-0.4667	7	0.318	60	0	11.9	-0.191	0.373	23.73	MQRankSum	C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000229243|protein_coding|||||||||||2377|-1||HGNC|17195|YES|CCDS8554.1|||,C|intron_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000329858|protein_coding||1/1|ENST00000329858.4:c.-217+209C>G|||||||||-1||HGNC|13307|YES|CCDS8553.1|||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000414226|protein_coding|||||||||||2462|-1||HGNC|17195|||||,C|upstream_gene_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000431922|protein_coding|||||||||||4049|-1||HGNC|13307||CCDS8553.1|||,C|intron_variant&non_coding_transcript_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000540335|processed_transcript||1/2|ENST00000540335.1:n.54+209C>G|||||||||-1||HGNC|13307|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000540513|processed_transcript|||||||||||2377|-1||HGNC|17195|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000542357|processed_transcript|||||||||||2812|-1||HGNC|17195|||||	-1	0.536383	0.568792	3155	2202	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			67,.,.	0.41791,.,.	
-aff_only	fam_pl	C0011JZ	chr12:8335722:A:T	1,.,.	7	0.318	22	-0.355	DB	476	9.0714	3.734	-0.4667	7	0.318	60.49	0	16.37	0.309	0.966	3.93	MQRankSum	T|downstream_gene_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000359286|protein_coding|||||||||||3080|1||HGNC|32281|YES|CCDS31737.1|||,T|intron_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000398526|protein_coding||2/2|ENST00000398526.2:c.274-5346A>T|||||||||1|cds_start_NF|HGNC|32281|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000454799|antisense||1/6|ENST00000454799.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000456135|antisense||1/3|ENST00000456135.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000541558|antisense||1/7|ENST00000541558.1:n.484+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000544214|antisense||1/5|ENST00000544214.1:n.531+2374A>T|||||||||1||HGNC|21644|YES||||	-1	0.138584	0.128167	193	100	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			27,.,.	0.296296,.,.	
-aff_only	fam_pl	C0011K2	chr12:8335722:A:T	1,.,.	7	0.318	22	-0.355	DB	476	9.0714	3.734	-0.4667	7	0.318	60.49	0	16.37	0.309	0.966	3.93	MQRankSum	T|downstream_gene_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000359286|protein_coding|||||||||||3080|1||HGNC|32281|YES|CCDS31737.1|||,T|intron_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000398526|protein_coding||2/2|ENST00000398526.2:c.274-5346A>T|||||||||1|cds_start_NF|HGNC|32281|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000454799|antisense||1/6|ENST00000454799.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000456135|antisense||1/3|ENST00000456135.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000541558|antisense||1/7|ENST00000541558.1:n.484+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000544214|antisense||1/5|ENST00000544214.1:n.531+2374A>T|||||||||1||HGNC|21644|YES||||	-1	0.138584	0.128167	193	100	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			23,.,.	0.565217,.,.	
-aff_only	fam_pl	C0011K3	chr12:8335722:A:T	1,.,.	7	0.318	22	-0.355	DB	476	9.0714	3.734	-0.4667	7	0.318	60.49	0	16.37	0.309	0.966	3.93	MQRankSum	T|downstream_gene_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000359286|protein_coding|||||||||||3080|1||HGNC|32281|YES|CCDS31737.1|||,T|intron_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000398526|protein_coding||2/2|ENST00000398526.2:c.274-5346A>T|||||||||1|cds_start_NF|HGNC|32281|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000454799|antisense||1/6|ENST00000454799.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000456135|antisense||1/3|ENST00000456135.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000541558|antisense||1/7|ENST00000541558.1:n.484+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000544214|antisense||1/5|ENST00000544214.1:n.531+2374A>T|||||||||1||HGNC|21644|YES||||	-1	0.138584	0.128167	193	100	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.363636,.,.	
-aff_only	fam_pl	C0011KA	chr12:8335722:A:T	1,.,1	7	0.318	22	-0.355	DB	476	9.0714	3.734	-0.4667	7	0.318	60.49	0	16.37	0.309	0.966	3.93	MQRankSum	T|downstream_gene_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000359286|protein_coding|||||||||||3080|1||HGNC|32281|YES|CCDS31737.1|||,T|intron_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000398526|protein_coding||2/2|ENST00000398526.2:c.274-5346A>T|||||||||1|cds_start_NF|HGNC|32281|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000454799|antisense||1/6|ENST00000454799.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000456135|antisense||1/3|ENST00000456135.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000541558|antisense||1/7|ENST00000541558.1:n.484+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000544214|antisense||1/5|ENST00000544214.1:n.531+2374A>T|||||||||1||HGNC|21644|YES||||	-1	0.138584	0.128167	193	100	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,23	0.538462,.,0.565217	
-aff_only	fam_pl	IP00FNP	chr12:8335722:A:T	1,.,1	7	0.318	22	-0.355	DB	476	9.0714	3.734	-0.4667	7	0.318	60.49	0	16.37	0.309	0.966	3.93	MQRankSum	T|downstream_gene_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000359286|protein_coding|||||||||||3080|1||HGNC|32281|YES|CCDS31737.1|||,T|intron_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000398526|protein_coding||2/2|ENST00000398526.2:c.274-5346A>T|||||||||1|cds_start_NF|HGNC|32281|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000454799|antisense||1/6|ENST00000454799.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000456135|antisense||1/3|ENST00000456135.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000541558|antisense||1/7|ENST00000541558.1:n.484+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000544214|antisense||1/5|ENST00000544214.1:n.531+2374A>T|||||||||1||HGNC|21644|YES||||	-1	0.138584	0.128167	193	100	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,27	0.351351,.,0.296296	
-aff_only	fam_pl	IP00FNW	chr12:8335722:A:T	1,.,.	7	0.318	22	-0.355	DB	476	9.0714	3.734	-0.4667	7	0.318	60.49	0	16.37	0.309	0.966	3.93	MQRankSum	T|downstream_gene_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000359286|protein_coding|||||||||||3080|1||HGNC|32281|YES|CCDS31737.1|||,T|intron_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000398526|protein_coding||2/2|ENST00000398526.2:c.274-5346A>T|||||||||1|cds_start_NF|HGNC|32281|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000454799|antisense||1/6|ENST00000454799.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000456135|antisense||1/3|ENST00000456135.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000541558|antisense||1/7|ENST00000541558.1:n.484+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000544214|antisense||1/5|ENST00000544214.1:n.531+2374A>T|||||||||1||HGNC|21644|YES||||	-1	0.138584	0.128167	193	100	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			24,.,.	0.458333,.,.	
-aff_only	fam_pl	IP00FNY	chr12:8335722:A:T	1,.,.	7	0.318	22	-0.355	DB	476	9.0714	3.734	-0.4667	7	0.318	60.49	0	16.37	0.309	0.966	3.93	MQRankSum	T|downstream_gene_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000359286|protein_coding|||||||||||3080|1||HGNC|32281|YES|CCDS31737.1|||,T|intron_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000398526|protein_coding||2/2|ENST00000398526.2:c.274-5346A>T|||||||||1|cds_start_NF|HGNC|32281|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000454799|antisense||1/6|ENST00000454799.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000456135|antisense||1/3|ENST00000456135.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000541558|antisense||1/7|ENST00000541558.1:n.484+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000544214|antisense||1/5|ENST00000544214.1:n.531+2374A>T|||||||||1||HGNC|21644|YES||||	-1	0.138584	0.128167	193	100	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,.	0.42,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9739997:C:A	1,.,.	7	0.318	22	0.066	DB	433	9.0714	0.418	-0.4667	7	0.318	60	0	13.93	0.399	0.665	23.76	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.466522	0.493146	2305	1620	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.444444,.,.	
-aff_only	fam_pl	C0011K2	chr12:9739997:C:A	1,.,.	7	0.318	22	0.066	DB	433	9.0714	0.418	-0.4667	7	0.318	60	0	13.93	0.399	0.665	23.76	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.466522	0.493146	2305	1620	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.510638,.,.	
-aff_only	fam_pl	C0011K3	chr12:9739997:C:A	1,.,.	7	0.318	22	0.066	DB	433	9.0714	0.418	-0.4667	7	0.318	60	0	13.93	0.399	0.665	23.76	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.466522	0.493146	2305	1620	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,.	0.46875,.,.	
-aff_only	fam_pl	C0011KA	chr12:9739997:C:A	1,.,1	7	0.318	22	0.066	DB	433	9.0714	0.418	-0.4667	7	0.318	60	0	13.93	0.399	0.665	23.76	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.466522	0.493146	2305	1620	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,47	0.5625,.,0.510638	
-aff_only	fam_pl	IP00FNP	chr12:9739997:C:A	1,.,1	7	0.318	22	0.066	DB	433	9.0714	0.418	-0.4667	7	0.318	60	0	13.93	0.399	0.665	23.76	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.466522	0.493146	2305	1620	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			49,.,36	0.489796,.,0.444444	
-aff_only	fam_pl	IP00FNW	chr12:9739997:C:A	1,.,.	7	0.318	22	0.066	DB	433	9.0714	0.418	-0.4667	7	0.318	60	0	13.93	0.399	0.665	23.76	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.466522	0.493146	2305	1620	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.472222,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9739997:C:A	1,.,.	7	0.318	22	0.066	DB	433	9.0714	0.418	-0.4667	7	0.318	60	0	13.93	0.399	0.665	23.76	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.466522	0.493146	2305	1620	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			66,.,.	0.560606,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9740839:G:A	1,.,.	7	0.318	22	0.978	DB	463	9.0714	0	-0.4667	7	0.318	60	0	15.14	-0.321	0.68	23.84	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.395541	0.452966	1773	1356	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,.	0.441176,.,.	
-aff_only	fam_pl	C0011K2	chr12:9740839:G:A	1,.,.	7	0.318	22	0.978	DB	463	9.0714	0	-0.4667	7	0.318	60	0	15.14	-0.321	0.68	23.84	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.395541	0.452966	1773	1356	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.590909,.,.	
-aff_only	fam_pl	C0011K3	chr12:9740839:G:A	1,.,.	7	0.318	22	0.978	DB	463	9.0714	0	-0.4667	7	0.318	60	0	15.14	-0.321	0.68	23.84	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.395541	0.452966	1773	1356	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.463415,.,.	
-aff_only	fam_pl	C0011KA	chr12:9740839:G:A	1,.,1	7	0.318	22	0.978	DB	463	9.0714	0	-0.4667	7	0.318	60	0	15.14	-0.321	0.68	23.84	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.395541	0.452966	1773	1356	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,44	0.648649,.,0.590909	
-aff_only	fam_pl	IP00FNP	chr12:9740839:G:A	1,.,1	7	0.318	22	0.978	DB	463	9.0714	0	-0.4667	7	0.318	60	0	15.14	-0.321	0.68	23.84	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.395541	0.452966	1773	1356	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,34	0.513514,.,0.441176	
-aff_only	fam_pl	IP00FNW	chr12:9740839:G:A	1,.,.	7	0.318	22	0.978	DB	463	9.0714	0	-0.4667	7	0.318	60	0	15.14	-0.321	0.68	23.84	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.395541	0.452966	1773	1356	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.390244,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9740839:G:A	1,.,.	7	0.318	22	0.978	DB	463	9.0714	0	-0.4667	7	0.318	60	0	15.14	-0.321	0.68	23.84	MQRankSum	A|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.395541	0.452966	1773	1356	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			73,.,.	0.589041,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9745571:A:G	1,.,.	7	0.318	22	-0.912	DB	489	9.0714	10.836	-0.4667	7	0.318	60	0	11.87	-0.08	1.147	23.83	MQRankSum	G|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||1576|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.446882	0.493154	2176	1624	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,.	0.689655,.,.	
-aff_only	fam_pl	C0011K2	chr12:9745571:A:G	1,.,.	7	0.318	22	-0.912	DB	489	9.0714	10.836	-0.4667	7	0.318	60	0	11.87	-0.08	1.147	23.83	MQRankSum	G|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||1576|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.446882	0.493154	2176	1624	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.604651,.,.	
-aff_only	fam_pl	C0011K3	chr12:9745571:A:G	1,.,.	7	0.318	22	-0.912	DB	489	9.0714	10.836	-0.4667	7	0.318	60	0	11.87	-0.08	1.147	23.83	MQRankSum	G|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||1576|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.446882	0.493154	2176	1624	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.466667,.,.	
-aff_only	fam_pl	C0011KA	chr12:9745571:A:G	1,.,1	7	0.318	22	-0.912	DB	489	9.0714	10.836	-0.4667	7	0.318	60	0	11.87	-0.08	1.147	23.83	MQRankSum	G|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||1576|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.446882	0.493154	2176	1624	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,43	0.517241,.,0.604651	
-aff_only	fam_pl	IP00FNP	chr12:9745571:A:G	1,.,1	7	0.318	22	-0.912	DB	489	9.0714	10.836	-0.4667	7	0.318	60	0	11.87	-0.08	1.147	23.83	MQRankSum	G|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||1576|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.446882	0.493154	2176	1624	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			66,.,29	0.424242,.,0.689655	
-aff_only	fam_pl	IP00FNW	chr12:9745571:A:G	1,.,.	7	0.318	22	-0.912	DB	489	9.0714	10.836	-0.4667	7	0.318	60	0	11.87	-0.08	1.147	23.83	MQRankSum	G|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||1576|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.446882	0.493154	2176	1624	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			56,.,.	0.446429,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9745571:A:G	1,.,.	7	0.318	22	-0.912	DB	489	9.0714	10.836	-0.4667	7	0.318	60	0	11.87	-0.08	1.147	23.83	MQRankSum	G|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||1576|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.446882	0.493154	2176	1624	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			74,.,.	0.445946,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9746600:T:C	1,.,.	7	0.318	22	0.035	DB	495	9.0714	0	-0.4667	7	0.318	60	0	14.96	0.73	0.682	23.48	MQRankSum	C|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||547|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.446344	0.493239	2177	1629	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,.	0.5,.,.	
-aff_only	fam_pl	C0011K2	chr12:9746600:T:C	1,.,.	7	0.318	22	0.035	DB	495	9.0714	0	-0.4667	7	0.318	60	0	14.96	0.73	0.682	23.48	MQRankSum	C|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||547|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.446344	0.493239	2177	1629	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,.	0.529412,.,.	
-aff_only	fam_pl	C0011K3	chr12:9746600:T:C	1,.,.	7	0.318	22	0.035	DB	495	9.0714	0	-0.4667	7	0.318	60	0	14.96	0.73	0.682	23.48	MQRankSum	C|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||547|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.446344	0.493239	2177	1629	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.555556,.,.	
-aff_only	fam_pl	C0011KA	chr12:9746600:T:C	1,.,1	7	0.318	22	0.035	DB	495	9.0714	0	-0.4667	7	0.318	60	0	14.96	0.73	0.682	23.48	MQRankSum	C|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||547|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.446344	0.493239	2177	1629	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,51	0.5,.,0.529412	
-aff_only	fam_pl	IP00FNP	chr12:9746600:T:C	1,.,1	7	0.318	22	0.035	DB	495	9.0714	0	-0.4667	7	0.318	60	0	14.96	0.73	0.682	23.48	MQRankSum	C|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||547|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.446344	0.493239	2177	1629	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			67,.,40	0.537313,.,0.5	
-aff_only	fam_pl	IP00FNW	chr12:9746600:T:C	1,.,.	7	0.318	22	0.035	DB	495	9.0714	0	-0.4667	7	0.318	60	0	14.96	0.73	0.682	23.48	MQRankSum	C|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||547|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.446344	0.493239	2177	1629	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			63,.,.	0.52381,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9746600:T:C	1,.,.	7	0.318	22	0.035	DB	495	9.0714	0	-0.4667	7	0.318	60	0	14.96	0.73	0.682	23.48	MQRankSum	C|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||547|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.446344	0.493239	2177	1629	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			69,.,.	0.521739,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9747513:G:A	1,.,.	7	0.318	22	.	DB	454	3.0103	0	nan	7	0.318	60.05	.	30.83	.	0.831	3.44	QD	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*357C>T||1082/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.586462	0.570162	3709	2184	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			8,.,.	1,.,.	
-aff_only	fam_pl	C0011K2	chr12:9747513:G:A	1,.,.	7	0.318	22	.	DB	454	3.0103	0	nan	7	0.318	60.05	.	30.83	.	0.831	3.44	QD	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*357C>T||1082/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.586462	0.570162	3709	2184	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			17,.,.	1,.,.	
-aff_only	fam_pl	C0011K3	chr12:9747513:G:A	1,.,.	7	0.318	22	.	DB	454	3.0103	0	nan	7	0.318	60.05	.	30.83	.	0.831	3.44	QD	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*357C>T||1082/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.586462	0.570162	3709	2184	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,.	1,.,.	
-aff_only	fam_pl	C0011KA	chr12:9747513:G:A	1,.,1	7	0.318	22	.	DB	454	3.0103	0	nan	7	0.318	60.05	.	30.83	.	0.831	3.44	QD	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*357C>T||1082/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.586462	0.570162	3709	2184	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			12,.,17	1,.,1	
-aff_only	fam_pl	IP00FNP	chr12:9747513:G:A	1,.,1	7	0.318	22	.	DB	454	3.0103	0	nan	7	0.318	60.05	.	30.83	.	0.831	3.44	QD	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*357C>T||1082/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.586462	0.570162	3709	2184	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,8	1,.,1	
-aff_only	fam_pl	IP00FNW	chr12:9747513:G:A	1,.,.	7	0.318	22	.	DB	454	3.0103	0	nan	7	0.318	60.05	.	30.83	.	0.831	3.44	QD	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*357C>T||1082/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.586462	0.570162	3709	2184	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	1,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9747513:G:A	1,.,.	7	0.318	22	.	DB	454	3.0103	0	nan	7	0.318	60.05	.	30.83	.	0.831	3.44	QD	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*357C>T||1082/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.586462	0.570162	3709	2184	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	1,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9747557:T:A	1,.,.	7	0.318	22	0.22	DB	435	9.0714	6.421	-0.4667	7	0.318	60	0	13.99	0.122	1.035	24.26	MQRankSum	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*313A>T||1038/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.471313	0.492262	2348	1613	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			20,.,.	0.4,.,.	
-aff_only	fam_pl	C0011K2	chr12:9747557:T:A	1,.,.	7	0.318	22	0.22	DB	435	9.0714	6.421	-0.4667	7	0.318	60	0	13.99	0.122	1.035	24.26	MQRankSum	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*313A>T||1038/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.471313	0.492262	2348	1613	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.432432,.,.	
-aff_only	fam_pl	C0011K3	chr12:9747557:T:A	1,.,.	7	0.318	22	0.22	DB	435	9.0714	6.421	-0.4667	7	0.318	60	0	13.99	0.122	1.035	24.26	MQRankSum	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*313A>T||1038/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.471313	0.492262	2348	1613	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.44186,.,.	
-aff_only	fam_pl	C0011KA	chr12:9747557:T:A	1,.,1	7	0.318	22	0.22	DB	435	9.0714	6.421	-0.4667	7	0.318	60	0	13.99	0.122	1.035	24.26	MQRankSum	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*313A>T||1038/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.471313	0.492262	2348	1613	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,37	0.461538,.,0.432432	
-aff_only	fam_pl	IP00FNP	chr12:9747557:T:A	1,.,1	7	0.318	22	0.22	DB	435	9.0714	6.421	-0.4667	7	0.318	60	0	13.99	0.122	1.035	24.26	MQRankSum	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*313A>T||1038/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.471313	0.492262	2348	1613	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,20	0.62,.,0.4	
-aff_only	fam_pl	IP00FNW	chr12:9747557:T:A	1,.,.	7	0.318	22	0.22	DB	435	9.0714	6.421	-0.4667	7	0.318	60	0	13.99	0.122	1.035	24.26	MQRankSum	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*313A>T||1038/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.471313	0.492262	2348	1613	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.463415,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9747557:T:A	1,.,.	7	0.318	22	0.22	DB	435	9.0714	6.421	-0.4667	7	0.318	60	0	13.99	0.122	1.035	24.26	MQRankSum	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*313A>T||1038/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.471313	0.492262	2348	1613	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			60,.,.	0.583333,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9747676:G:A	1,.,.	7	0.318	22	-0.615	DB	483	9.0714	8.229	-0.4667	7	0.318	60	0	14.15	0.796	0.422	23.96	MQRankSum	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*194C>T||919/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.474057	0.495801	2374	1634	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.30303,.,.	
-aff_only	fam_pl	C0011K2	chr12:9747676:G:A	1,.,.	7	0.318	22	-0.615	DB	483	9.0714	8.229	-0.4667	7	0.318	60	0	14.15	0.796	0.422	23.96	MQRankSum	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*194C>T||919/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.474057	0.495801	2374	1634	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.351351,.,.	
-aff_only	fam_pl	C0011K3	chr12:9747676:G:A	1,.,.	7	0.318	22	-0.615	DB	483	9.0714	8.229	-0.4667	7	0.318	60	0	14.15	0.796	0.422	23.96	MQRankSum	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*194C>T||919/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.474057	0.495801	2374	1634	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.555556,.,.	
-aff_only	fam_pl	C0011KA	chr12:9747676:G:A	1,.,1	7	0.318	22	-0.615	DB	483	9.0714	8.229	-0.4667	7	0.318	60	0	14.15	0.796	0.422	23.96	MQRankSum	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*194C>T||919/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.474057	0.495801	2374	1634	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,37	0.545455,.,0.351351	
-aff_only	fam_pl	IP00FNP	chr12:9747676:G:A	1,.,1	7	0.318	22	-0.615	DB	483	9.0714	8.229	-0.4667	7	0.318	60	0	14.15	0.796	0.422	23.96	MQRankSum	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*194C>T||919/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.474057	0.495801	2374	1634	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			57,.,33	0.719298,.,0.30303	
-aff_only	fam_pl	IP00FNW	chr12:9747676:G:A	1,.,.	7	0.318	22	-0.615	DB	483	9.0714	8.229	-0.4667	7	0.318	60	0	14.15	0.796	0.422	23.96	MQRankSum	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*194C>T||919/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.474057	0.495801	2374	1634	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			53,.,.	0.471698,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9747676:G:A	1,.,.	7	0.318	22	-0.615	DB	483	9.0714	8.229	-0.4667	7	0.318	60	0	14.15	0.796	0.422	23.96	MQRankSum	A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*194C>T||919/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.474057	0.495801	2374	1634	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			70,.,.	0.485714,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9748572:T:C	1,.,.	7	0.318	22	0.149	DB	488	9.0714	19.998	-0.4667	7	0.318	60	0	15.11	-0.324	0.71	20.5	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.531-555A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.490104	0.497058	2536	1645	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.731707,.,.	
-aff_only	fam_pl	C0011K2	chr12:9748572:T:C	1,.,.	7	0.318	22	0.149	DB	488	9.0714	19.998	-0.4667	7	0.318	60	0	15.11	-0.324	0.71	20.5	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.531-555A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.490104	0.497058	2536	1645	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.354839,.,.	
-aff_only	fam_pl	C0011K3	chr12:9748572:T:C	1,.,.	7	0.318	22	0.149	DB	488	9.0714	19.998	-0.4667	7	0.318	60	0	15.11	-0.324	0.71	20.5	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.531-555A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.490104	0.497058	2536	1645	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,.	0.403846,.,.	
-aff_only	fam_pl	C0011KA	chr12:9748572:T:C	1,.,1	7	0.318	22	0.149	DB	488	9.0714	19.998	-0.4667	7	0.318	60	0	15.11	-0.324	0.71	20.5	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.531-555A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.490104	0.497058	2536	1645	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,31	0.545455,.,0.354839	
-aff_only	fam_pl	IP00FNP	chr12:9748572:T:C	1,.,1	7	0.318	22	0.149	DB	488	9.0714	19.998	-0.4667	7	0.318	60	0	15.11	-0.324	0.71	20.5	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.531-555A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.490104	0.497058	2536	1645	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			56,.,41	0.571429,.,0.731707	
-aff_only	fam_pl	IP00FNW	chr12:9748572:T:C	1,.,.	7	0.318	22	0.149	DB	488	9.0714	19.998	-0.4667	7	0.318	60	0	15.11	-0.324	0.71	20.5	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.531-555A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.490104	0.497058	2536	1645	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.553191,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9748572:T:C	1,.,.	7	0.318	22	0.149	DB	488	9.0714	19.998	-0.4667	7	0.318	60	0	15.11	-0.324	0.71	20.5	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.531-555A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.490104	0.497058	2536	1645	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			77,.,.	0.545455,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9749543:G:A	1,.,.	7	0.318	22	-0.812	DB	526	9.0714	3.932	-0.4667	7	0.318	60	0	13.3	-0.296	0.879	23.49	MQRankSum	A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+1099C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.321233	0.362097	1192	872	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.461538,.,.	
-aff_only	fam_pl	C0011K2	chr12:9749543:G:A	1,.,.	7	0.318	22	-0.812	DB	526	9.0714	3.932	-0.4667	7	0.318	60	0	13.3	-0.296	0.879	23.49	MQRankSum	A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+1099C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.321233	0.362097	1192	872	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			54,.,.	0.611111,.,.	
-aff_only	fam_pl	C0011K3	chr12:9749543:G:A	1,.,.	7	0.318	22	-0.812	DB	526	9.0714	3.932	-0.4667	7	0.318	60	0	13.3	-0.296	0.879	23.49	MQRankSum	A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+1099C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.321233	0.362097	1192	872	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,.	0.411765,.,.	
-aff_only	fam_pl	C0011KA	chr12:9749543:G:A	1,.,1	7	0.318	22	-0.812	DB	526	9.0714	3.932	-0.4667	7	0.318	60	0	13.3	-0.296	0.879	23.49	MQRankSum	A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+1099C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.321233	0.362097	1192	872	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,54	0.52381,.,0.611111	
-aff_only	fam_pl	IP00FNP	chr12:9749543:G:A	1,.,1	7	0.318	22	-0.812	DB	526	9.0714	3.932	-0.4667	7	0.318	60	0	13.3	-0.296	0.879	23.49	MQRankSum	A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+1099C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.321233	0.362097	1192	872	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			63,.,39	0.412698,.,0.461538	
-aff_only	fam_pl	IP00FNW	chr12:9749543:G:A	1,.,.	7	0.318	22	-0.812	DB	526	9.0714	3.932	-0.4667	7	0.318	60	0	13.3	-0.296	0.879	23.49	MQRankSum	A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+1099C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.321233	0.362097	1192	872	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			59,.,.	0.508475,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9749543:G:A	1,.,.	7	0.318	22	-0.812	DB	526	9.0714	3.932	-0.4667	7	0.318	60	0	13.3	-0.296	0.879	23.49	MQRankSum	A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+1099C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.321233	0.362097	1192	872	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			78,.,.	0.448718,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9749682:T:C	1,.,.	7	0.318	22	-0.239	DB	496	9.0714	2.311	-0.4667	7	0.318	60	0	15.49	-0.203	0.828	23.45	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+960A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.4901	0.496908	2537	1643	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.555556,.,.	
-aff_only	fam_pl	C0011K2	chr12:9749682:T:C	1,.,.	7	0.318	22	-0.239	DB	496	9.0714	2.311	-0.4667	7	0.318	60	0	15.49	-0.203	0.828	23.45	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+960A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.4901	0.496908	2537	1643	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.6,.,.	
-aff_only	fam_pl	C0011K3	chr12:9749682:T:C	1,.,.	7	0.318	22	-0.239	DB	496	9.0714	2.311	-0.4667	7	0.318	60	0	15.49	-0.203	0.828	23.45	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+960A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.4901	0.496908	2537	1643	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.606061,.,.	
-aff_only	fam_pl	C0011KA	chr12:9749682:T:C	1,.,1	7	0.318	22	-0.239	DB	496	9.0714	2.311	-0.4667	7	0.318	60	0	15.49	-0.203	0.828	23.45	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+960A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.4901	0.496908	2537	1643	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,45	0.666667,.,0.6	
-aff_only	fam_pl	IP00FNP	chr12:9749682:T:C	1,.,1	7	0.318	22	-0.239	DB	496	9.0714	2.311	-0.4667	7	0.318	60	0	15.49	-0.203	0.828	23.45	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+960A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.4901	0.496908	2537	1643	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			68,.,36	0.5,.,0.555556	
-aff_only	fam_pl	IP00FNW	chr12:9749682:T:C	1,.,.	7	0.318	22	-0.239	DB	496	9.0714	2.311	-0.4667	7	0.318	60	0	15.49	-0.203	0.828	23.45	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+960A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.4901	0.496908	2537	1643	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			55,.,.	0.527273,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9749682:T:C	1,.,.	7	0.318	22	-0.239	DB	496	9.0714	2.311	-0.4667	7	0.318	60	0	15.49	-0.203	0.828	23.45	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+960A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.4901	0.496908	2537	1643	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			76,.,.	0.513158,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9749726:G:T	1,.,.	7	0.318	22	0.299	DB	498	9.0714	0.385	-0.4667	7	0.318	60	0	14.13	-0.021	0.67	23.47	MQRankSum	T|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+916C>A|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.490522	0.497572	2538	1647	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,.	0.482759,.,.	
-aff_only	fam_pl	C0011K2	chr12:9749726:G:T	1,.,.	7	0.318	22	0.299	DB	498	9.0714	0.385	-0.4667	7	0.318	60	0	14.13	-0.021	0.67	23.47	MQRankSum	T|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+916C>A|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.490522	0.497572	2538	1647	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.531915,.,.	
-aff_only	fam_pl	C0011K3	chr12:9749726:G:T	1,.,.	7	0.318	22	0.299	DB	498	9.0714	0.385	-0.4667	7	0.318	60	0	14.13	-0.021	0.67	23.47	MQRankSum	T|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+916C>A|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.490522	0.497572	2538	1647	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,.	0.558824,.,.	
-aff_only	fam_pl	C0011KA	chr12:9749726:G:T	1,.,1	7	0.318	22	0.299	DB	498	9.0714	0.385	-0.4667	7	0.318	60	0	14.13	-0.021	0.67	23.47	MQRankSum	T|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+916C>A|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.490522	0.497572	2538	1647	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,47	0.636364,.,0.531915	
-aff_only	fam_pl	IP00FNP	chr12:9749726:G:T	1,.,1	7	0.318	22	0.299	DB	498	9.0714	0.385	-0.4667	7	0.318	60	0	14.13	-0.021	0.67	23.47	MQRankSum	T|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+916C>A|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.490522	0.497572	2538	1647	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			66,.,29	0.424242,.,0.482759	
-aff_only	fam_pl	IP00FNW	chr12:9749726:G:T	1,.,.	7	0.318	22	0.299	DB	498	9.0714	0.385	-0.4667	7	0.318	60	0	14.13	-0.021	0.67	23.47	MQRankSum	T|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+916C>A|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.490522	0.497572	2538	1647	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			59,.,.	0.542373,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9749726:G:T	1,.,.	7	0.318	22	0.299	DB	498	9.0714	0.385	-0.4667	7	0.318	60	0	14.13	-0.021	0.67	23.47	MQRankSum	T|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+916C>A|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.490522	0.497572	2538	1647	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			80,.,.	0.4625,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9752576:TAA:T	1,.,.	7	0.318	22	1.64	DB	435	3.0103	0	nan	7	0.318	60.07	0.371	33.56	1.73	1.108	-0.6292	MQRankSum	-|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||2/5|ENST00000229402.3:c.185-141_185-140del|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.468831	0.507347	1899	1416	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			10,.,.	1,.,.	
-aff_only	fam_pl	C0011K2	chr12:9752576:TAA:T	1,.,.	7	0.318	22	1.64	DB	435	3.0103	0	nan	7	0.318	60.07	0.371	33.56	1.73	1.108	-0.6292	MQRankSum	-|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||2/5|ENST00000229402.3:c.185-141_185-140del|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.468831	0.507347	1899	1416	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			10,.,.	1,.,.	
-aff_only	fam_pl	C0011K3	chr12:9752576:TAA:T	1,.,.	7	0.318	22	1.64	DB	435	3.0103	0	nan	7	0.318	60.07	0.371	33.56	1.73	1.108	-0.6292	MQRankSum	-|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||2/5|ENST00000229402.3:c.185-141_185-140del|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.468831	0.507347	1899	1416	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			20,.,.	1,.,.	
-aff_only	fam_pl	C0011KA	chr12:9752576:TAA:T	1,.,1	7	0.318	22	1.64	DB	435	3.0103	0	nan	7	0.318	60.07	0.371	33.56	1.73	1.108	-0.6292	MQRankSum	-|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||2/5|ENST00000229402.3:c.185-141_185-140del|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.468831	0.507347	1899	1416	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			18,.,10	0.944444,.,1	
-aff_only	fam_pl	IP00FNP	chr12:9752576:TAA:T	1,.,1	7	0.318	22	1.64	DB	435	3.0103	0	nan	7	0.318	60.07	0.371	33.56	1.73	1.108	-0.6292	MQRankSum	-|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||2/5|ENST00000229402.3:c.185-141_185-140del|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.468831	0.507347	1899	1416	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			23,.,10	1,.,1	
-aff_only	fam_pl	IP00FNW	chr12:9752576:TAA:T	1,.,.	7	0.318	22	1.64	DB	435	3.0103	0	nan	7	0.318	60.07	0.371	33.56	1.73	1.108	-0.6292	MQRankSum	-|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||2/5|ENST00000229402.3:c.185-141_185-140del|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.468831	0.507347	1899	1416	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			20,.,.	1,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9752576:TAA:T	1,.,.	7	0.318	22	1.64	DB	435	3.0103	0	nan	7	0.318	60.07	0.371	33.56	1.73	1.108	-0.6292	MQRankSum	-|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||2/5|ENST00000229402.3:c.185-141_185-140del|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.468831	0.507347	1899	1416	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			18,.,.	1,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9755905:G:A	1,.,.	7	0.318	22	-0.411	DB	474	9.0714	11.705	-0.4667	7	0.318	60.03	0	15.49	-0.815	1.213	7.16	MQRankSum	A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1710C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.371155	0.369347	1482	897	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.682927,.,.	
-aff_only	fam_pl	C0011K2	chr12:9755905:G:A	1,.,.	7	0.318	22	-0.411	DB	474	9.0714	11.705	-0.4667	7	0.318	60.03	0	15.49	-0.815	1.213	7.16	MQRankSum	A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1710C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.371155	0.369347	1482	897	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			49,.,.	0.591837,.,.	
-aff_only	fam_pl	C0011K3	chr12:9755905:G:A	1,.,.	7	0.318	22	-0.411	DB	474	9.0714	11.705	-0.4667	7	0.318	60.03	0	15.49	-0.815	1.213	7.16	MQRankSum	A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1710C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.371155	0.369347	1482	897	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.644444,.,.	
-aff_only	fam_pl	C0011KA	chr12:9755905:G:A	1,.,1	7	0.318	22	-0.411	DB	474	9.0714	11.705	-0.4667	7	0.318	60.03	0	15.49	-0.815	1.213	7.16	MQRankSum	A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1710C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.371155	0.369347	1482	897	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,49	0.53125,.,0.591837	
-aff_only	fam_pl	IP00FNP	chr12:9755905:G:A	1,.,1	7	0.318	22	-0.411	DB	474	9.0714	11.705	-0.4667	7	0.318	60.03	0	15.49	-0.815	1.213	7.16	MQRankSum	A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1710C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.371155	0.369347	1482	897	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,41	0.5,.,0.682927	
-aff_only	fam_pl	IP00FNW	chr12:9755905:G:A	1,.,.	7	0.318	22	-0.411	DB	474	9.0714	11.705	-0.4667	7	0.318	60.03	0	15.49	-0.815	1.213	7.16	MQRankSum	A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1710C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.371155	0.369347	1482	897	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,.	0.5,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9755905:G:A	1,.,.	7	0.318	22	-0.411	DB	474	9.0714	11.705	-0.4667	7	0.318	60.03	0	15.49	-0.815	1.213	7.16	MQRankSum	A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1710C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.371155	0.369347	1482	897	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			55,.,.	0.454545,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9756021:C:CTATT	1,.,.	7	0.318	22	0	DB	463	9.0714	2.879	-0.4667	7	0.318	60.03	0	20.84	-0.093	0.847	10.46	MQRankSum	TATT|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1830_86-1827dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.358611	0.357388	1344	823	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.607143,.,.	
-aff_only	fam_pl	C0011K2	chr12:9756021:C:CTATT	1,.,.	7	0.318	22	0	DB	463	9.0714	2.879	-0.4667	7	0.318	60.03	0	20.84	-0.093	0.847	10.46	MQRankSum	TATT|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1830_86-1827dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.358611	0.357388	1344	823	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.514286,.,.	
-aff_only	fam_pl	C0011K3	chr12:9756021:C:CTATT	1,.,.	7	0.318	22	0	DB	463	9.0714	2.879	-0.4667	7	0.318	60.03	0	20.84	-0.093	0.847	10.46	MQRankSum	TATT|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1830_86-1827dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.358611	0.357388	1344	823	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,.	0.551724,.,.	
-aff_only	fam_pl	C0011KA	chr12:9756021:C:CTATT	1,.,1	7	0.318	22	0	DB	463	9.0714	2.879	-0.4667	7	0.318	60.03	0	20.84	-0.093	0.847	10.46	MQRankSum	TATT|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1830_86-1827dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.358611	0.357388	1344	823	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,35	0.538462,.,0.514286	
-aff_only	fam_pl	IP00FNP	chr12:9756021:C:CTATT	1,.,1	7	0.318	22	0	DB	463	9.0714	2.879	-0.4667	7	0.318	60.03	0	20.84	-0.093	0.847	10.46	MQRankSum	TATT|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1830_86-1827dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.358611	0.357388	1344	823	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,28	0.414634,.,0.607143	
-aff_only	fam_pl	IP00FNW	chr12:9756021:C:CTATT	1,.,.	7	0.318	22	0	DB	463	9.0714	2.879	-0.4667	7	0.318	60.03	0	20.84	-0.093	0.847	10.46	MQRankSum	TATT|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1830_86-1827dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.358611	0.357388	1344	823	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.571429,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9756021:C:CTATT	1,.,.	7	0.318	22	0	DB	463	9.0714	2.879	-0.4667	7	0.318	60.03	0	20.84	-0.093	0.847	10.46	MQRankSum	TATT|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1830_86-1827dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.358611	0.357388	1344	823	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.585366,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9759244:T:TTA	1,.,.	7	0.318	22	0.412	DB	333	9.0714	16.613	-0.4667	7	0.318	59.48	0	14.14	-0.403	0.218	4.79	MQRankSum	TA|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+1105_85+1106dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.460276	0.480533	1430	1075	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			18,.,.	0.444444,.,.	
-aff_only	fam_pl	C0011K2	chr12:9759244:T:TTA	1,.,.	7	0.318	22	0.412	DB	333	9.0714	16.613	-0.4667	7	0.318	59.48	0	14.14	-0.403	0.218	4.79	MQRankSum	TA|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+1105_85+1106dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.460276	0.480533	1430	1075	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			23,.,.	0.434783,.,.	
-aff_only	fam_pl	C0011K3	chr12:9759244:T:TTA	1,.,.	7	0.318	22	0.412	DB	333	9.0714	16.613	-0.4667	7	0.318	59.48	0	14.14	-0.403	0.218	4.79	MQRankSum	TA|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+1105_85+1106dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.460276	0.480533	1430	1075	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,.	0.40625,.,.	
-aff_only	fam_pl	C0011KA	chr12:9759244:T:TTA	1,.,1	7	0.318	22	0.412	DB	333	9.0714	16.613	-0.4667	7	0.318	59.48	0	14.14	-0.403	0.218	4.79	MQRankSum	TA|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+1105_85+1106dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.460276	0.480533	1430	1075	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,23	0.5,.,0.434783	
-aff_only	fam_pl	IP00FNP	chr12:9759244:T:TTA	1,.,1	7	0.318	22	0.412	DB	333	9.0714	16.613	-0.4667	7	0.318	59.48	0	14.14	-0.403	0.218	4.79	MQRankSum	TA|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+1105_85+1106dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.460276	0.480533	1430	1075	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,18	0.6,.,0.444444	
-aff_only	fam_pl	IP00FNW	chr12:9759244:T:TTA	1,.,.	7	0.318	22	0.412	DB	333	9.0714	16.613	-0.4667	7	0.318	59.48	0	14.14	-0.403	0.218	4.79	MQRankSum	TA|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+1105_85+1106dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.460276	0.480533	1430	1075	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			19,.,.	0.631579,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9759244:T:TTA	1,.,.	7	0.318	22	0.412	DB	333	9.0714	16.613	-0.4667	7	0.318	59.48	0	14.14	-0.403	0.218	4.79	MQRankSum	TA|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+1105_85+1106dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.460276	0.480533	1430	1075	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.404762,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9759465:A:C	1,.,.	7	0.318	22	0.207	DB	411	9.0714	3.51	-0.4667	7	0.318	60	0	12.52	-0.122	0.517	23.24	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+886T>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.378239	0.421036	1567	1108	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			22,.,.	0.590909,.,.	
-aff_only	fam_pl	C0011K2	chr12:9759465:A:C	1,.,.	7	0.318	22	0.207	DB	411	9.0714	3.51	-0.4667	7	0.318	60	0	12.52	-0.122	0.517	23.24	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+886T>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.378239	0.421036	1567	1108	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.5,.,.	
-aff_only	fam_pl	C0011K3	chr12:9759465:A:C	1,.,.	7	0.318	22	0.207	DB	411	9.0714	3.51	-0.4667	7	0.318	60	0	12.52	-0.122	0.517	23.24	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+886T>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.378239	0.421036	1567	1108	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.325581,.,.	
-aff_only	fam_pl	C0011KA	chr12:9759465:A:C	1,.,1	7	0.318	22	0.207	DB	411	9.0714	3.51	-0.4667	7	0.318	60	0	12.52	-0.122	0.517	23.24	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+886T>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.378239	0.421036	1567	1108	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			27,.,38	0.555556,.,0.5	
-aff_only	fam_pl	IP00FNP	chr12:9759465:A:C	1,.,1	7	0.318	22	0.207	DB	411	9.0714	3.51	-0.4667	7	0.318	60	0	12.52	-0.122	0.517	23.24	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+886T>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.378239	0.421036	1567	1108	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,22	0.472222,.,0.590909	
-aff_only	fam_pl	IP00FNW	chr12:9759465:A:C	1,.,.	7	0.318	22	0.207	DB	411	9.0714	3.51	-0.4667	7	0.318	60	0	12.52	-0.122	0.517	23.24	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+886T>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.378239	0.421036	1567	1108	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.421053,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9759465:A:C	1,.,.	7	0.318	22	0.207	DB	411	9.0714	3.51	-0.4667	7	0.318	60	0	12.52	-0.122	0.517	23.24	MQRankSum	C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+886T>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.378239	0.421036	1567	1108	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			59,.,.	0.474576,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9761465:C:G	1,.,.	7	0.318	22	0.651	DB	393	9.0714	0.939	-0.4667	7	0.318	52.36	-1.34	12.23	0.243	0.732	-2.365	MQ	G|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||983|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.380015	0.423276	1658	1180	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.388889,.,.	
-aff_only	fam_pl	C0011K2	chr12:9761465:C:G	1,.,.	7	0.318	22	0.651	DB	393	9.0714	0.939	-0.4667	7	0.318	52.36	-1.34	12.23	0.243	0.732	-2.365	MQ	G|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||983|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.380015	0.423276	1658	1180	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			22,.,.	0.227273,.,.	
-aff_only	fam_pl	C0011K3	chr12:9761465:C:G	1,.,.	7	0.318	22	0.651	DB	393	9.0714	0.939	-0.4667	7	0.318	52.36	-1.34	12.23	0.243	0.732	-2.365	MQ	G|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||983|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.380015	0.423276	1658	1180	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.47619,.,.	
-aff_only	fam_pl	C0011KA	chr12:9761465:C:G	1,.,1	7	0.318	22	0.651	DB	393	9.0714	0.939	-0.4667	7	0.318	52.36	-1.34	12.23	0.243	0.732	-2.365	MQ	G|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||983|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.380015	0.423276	1658	1180	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,22	0.46875,.,0.227273	
-aff_only	fam_pl	IP00FNP	chr12:9761465:C:G	1,.,1	7	0.318	22	0.651	DB	393	9.0714	0.939	-0.4667	7	0.318	52.36	-1.34	12.23	0.243	0.732	-2.365	MQ	G|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||983|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.380015	0.423276	1658	1180	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			54,.,36	0.444444,.,0.388889	
-aff_only	fam_pl	IP00FNW	chr12:9761465:C:G	1,.,.	7	0.318	22	0.651	DB	393	9.0714	0.939	-0.4667	7	0.318	52.36	-1.34	12.23	0.243	0.732	-2.365	MQ	G|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||983|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.380015	0.423276	1658	1180	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.410256,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9761465:C:G	1,.,.	7	0.318	22	0.651	DB	393	9.0714	0.939	-0.4667	7	0.318	52.36	-1.34	12.23	0.243	0.732	-2.365	MQ	G|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||983|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.380015	0.423276	1658	1180	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.589744,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9763589:C:T	1,.,.	7	0.318	22	1.07	DB	489	9.0714	0	-0.4667	7	0.318	59.98	0	14.01	-0.276	0.678	7.72	MQRankSum	T|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3107|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.37913	0.422091	1660	1181	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,.	0.53125,.,.	
-aff_only	fam_pl	C0011K2	chr12:9763589:C:T	1,.,.	7	0.318	22	1.07	DB	489	9.0714	0	-0.4667	7	0.318	59.98	0	14.01	-0.276	0.678	7.72	MQRankSum	T|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3107|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.37913	0.422091	1660	1181	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.622222,.,.	
-aff_only	fam_pl	C0011K3	chr12:9763589:C:T	1,.,.	7	0.318	22	1.07	DB	489	9.0714	0	-0.4667	7	0.318	59.98	0	14.01	-0.276	0.678	7.72	MQRankSum	T|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3107|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.37913	0.422091	1660	1181	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.487805,.,.	
-aff_only	fam_pl	C0011KA	chr12:9763589:C:T	1,.,1	7	0.318	22	1.07	DB	489	9.0714	0	-0.4667	7	0.318	59.98	0	14.01	-0.276	0.678	7.72	MQRankSum	T|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3107|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.37913	0.422091	1660	1181	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,45	0.45,.,0.622222	
-aff_only	fam_pl	IP00FNP	chr12:9763589:C:T	1,.,1	7	0.318	22	1.07	DB	489	9.0714	0	-0.4667	7	0.318	59.98	0	14.01	-0.276	0.678	7.72	MQRankSum	T|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3107|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.37913	0.422091	1660	1181	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			56,.,32	0.517857,.,0.53125	
-aff_only	fam_pl	IP00FNW	chr12:9763589:C:T	1,.,.	7	0.318	22	1.07	DB	489	9.0714	0	-0.4667	7	0.318	59.98	0	14.01	-0.276	0.678	7.72	MQRankSum	T|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3107|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.37913	0.422091	1660	1181	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,.	0.461538,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9763589:C:T	1,.,.	7	0.318	22	1.07	DB	489	9.0714	0	-0.4667	7	0.318	59.98	0	14.01	-0.276	0.678	7.72	MQRankSum	T|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3107|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.37913	0.422091	1660	1181	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			71,.,.	0.478873,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9763737:G:A	1,.,.	7	0.318	22	0.508	DB	448	9.0714	7	-0.4667	7	0.318	59.78	0	16.81	0.294	0.79	6.83	MQRankSum	A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3255|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.378565	0.421863	1653	1176	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.666667,.,.	
-aff_only	fam_pl	C0011K2	chr12:9763737:G:A	1,.,.	7	0.318	22	0.508	DB	448	9.0714	7	-0.4667	7	0.318	59.78	0	16.81	0.294	0.79	6.83	MQRankSum	A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3255|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.378565	0.421863	1653	1176	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,.	0.55,.,.	
-aff_only	fam_pl	C0011K3	chr12:9763737:G:A	1,.,.	7	0.318	22	0.508	DB	448	9.0714	7	-0.4667	7	0.318	59.78	0	16.81	0.294	0.79	6.83	MQRankSum	A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3255|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.378565	0.421863	1653	1176	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,.	0.538462,.,.	
-aff_only	fam_pl	C0011KA	chr12:9763737:G:A	1,.,1	7	0.318	22	0.508	DB	448	9.0714	7	-0.4667	7	0.318	59.78	0	16.81	0.294	0.79	6.83	MQRankSum	A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3255|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.378565	0.421863	1653	1176	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,40	0.787879,.,0.55	
-aff_only	fam_pl	IP00FNP	chr12:9763737:G:A	1,.,1	7	0.318	22	0.508	DB	448	9.0714	7	-0.4667	7	0.318	59.78	0	16.81	0.294	0.79	6.83	MQRankSum	A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3255|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.378565	0.421863	1653	1176	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,33	0.463415,.,0.666667	
-aff_only	fam_pl	IP00FNW	chr12:9763737:G:A	1,.,.	7	0.318	22	0.508	DB	448	9.0714	7	-0.4667	7	0.318	59.78	0	16.81	0.294	0.79	6.83	MQRankSum	A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3255|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.378565	0.421863	1653	1176	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.634146,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9763737:G:A	1,.,.	7	0.318	22	0.508	DB	448	9.0714	7	-0.4667	7	0.318	59.78	0	16.81	0.294	0.79	6.83	MQRankSum	A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3255|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.378565	0.421863	1653	1176	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			62,.,.	0.564516,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9764897:G:A	1,.,.	7	0.318	22	-0.64	DB	450	9.0714	0.867	-0.4667	7	0.318	58.53	0	13.7	-0.967	0.626	4.92	MQRankSum	A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||4415|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.379082	0.422317	1658	1178	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,.	0.5,.,.	
-aff_only	fam_pl	C0011K2	chr12:9764897:G:A	1,.,.	7	0.318	22	-0.64	DB	450	9.0714	0.867	-0.4667	7	0.318	58.53	0	13.7	-0.967	0.626	4.92	MQRankSum	A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||4415|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.379082	0.422317	1658	1178	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.454545,.,.	
-aff_only	fam_pl	C0011K3	chr12:9764897:G:A	1,.,.	7	0.318	22	-0.64	DB	450	9.0714	0.867	-0.4667	7	0.318	58.53	0	13.7	-0.967	0.626	4.92	MQRankSum	A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||4415|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.379082	0.422317	1658	1178	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.536585,.,.	
-aff_only	fam_pl	C0011KA	chr12:9764897:G:A	1,.,1	7	0.318	22	-0.64	DB	450	9.0714	0.867	-0.4667	7	0.318	58.53	0	13.7	-0.967	0.626	4.92	MQRankSum	A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||4415|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.379082	0.422317	1658	1178	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,44	0.444444,.,0.454545	
-aff_only	fam_pl	IP00FNP	chr12:9764897:G:A	1,.,1	7	0.318	22	-0.64	DB	450	9.0714	0.867	-0.4667	7	0.318	58.53	0	13.7	-0.967	0.626	4.92	MQRankSum	A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||4415|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.379082	0.422317	1658	1178	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,26	0.479167,.,0.5	
-aff_only	fam_pl	IP00FNW	chr12:9764897:G:A	1,.,.	7	0.318	22	-0.64	DB	450	9.0714	0.867	-0.4667	7	0.318	58.53	0	13.7	-0.967	0.626	4.92	MQRankSum	A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||4415|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.379082	0.422317	1658	1178	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.511628,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9764897:G:A	1,.,.	7	0.318	22	-0.64	DB	450	9.0714	0.867	-0.4667	7	0.318	58.53	0	13.7	-0.967	0.626	4.92	MQRankSum	A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||4415|-1||HGNC|6373|YES|CCDS8601.1|||	-1	0.379082	0.422317	1658	1178	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			69,.,.	0.57971,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9769429:CAGAG:C	1,.,.	7	0.318	22	0.878	DB	341	9.0714	0.621	-0.5455	8	0.364	59.59	0	15.12	-0.082	0.781	6.29	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.379867	0.42454	1287	922	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			19,.,.	0.526316,.,.	
-aff_only	fam_pl	C0011K2	chr12:9769429:CAGAG:C	1,.,.	7	0.318	22	0.878	DB	341	9.0714	0.621	-0.5455	8	0.364	59.59	0	15.12	-0.082	0.781	6.29	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.379867	0.42454	1287	922	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			15,.,.	0.4,.,.	
-aff_only	fam_pl	C0011K3	chr12:9769429:CAGAG:C	1,.,.	7	0.318	22	0.878	DB	341	9.0714	0.621	-0.5455	8	0.364	59.59	0	15.12	-0.082	0.781	6.29	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.379867	0.42454	1287	922	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			18,.,.	0.388889,.,.	
-aff_only	fam_pl	C0011KA	chr12:9769429:CAGAG:C	1,.,1	7	0.318	22	0.878	DB	341	9.0714	0.621	-0.5455	8	0.364	59.59	0	15.12	-0.082	0.781	6.29	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.379867	0.42454	1287	922	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			27,.,15	0.444444,.,0.4	
-aff_only	fam_pl	IP00FNP	chr12:9769429:CAGAG:C	1,.,1	7	0.318	22	0.878	DB	341	9.0714	0.621	-0.5455	8	0.364	59.59	0	15.12	-0.082	0.781	6.29	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.379867	0.42454	1287	922	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			24,.,19	0.375,.,0.526316	
-aff_only	fam_pl	IP00FNW	chr12:9769429:CAGAG:C	1,.,.	7	0.318	22	0.878	DB	341	9.0714	0.621	-0.5455	8	0.364	59.59	0	15.12	-0.082	0.781	6.29	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.379867	0.42454	1287	922	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			17,.,.	0.352941,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9769429:CAGAG:C	1,.,.	7	0.318	22	0.878	DB	341	9.0714	0.621	-0.5455	8	0.364	59.59	0	15.12	-0.082	0.781	6.29	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.379867	0.42454	1287	922	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.392857,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9779878:T:A	1,.,.	7	0.318	22	1.15	DB	448	9.0714	5.097	-0.4667	7	0.318	59.98	0	21.29	0.493	0.473	7.39	MQRankSum	A|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3054|-1||HGNC|47663|YES||||	-1	0.377381	0.419781	1544	1098	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			18,.,.	0.555556,.,.	
-aff_only	fam_pl	C0011K2	chr12:9779878:T:A	1,.,.	7	0.318	22	1.15	DB	448	9.0714	5.097	-0.4667	7	0.318	59.98	0	21.29	0.493	0.473	7.39	MQRankSum	A|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3054|-1||HGNC|47663|YES||||	-1	0.377381	0.419781	1544	1098	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.581395,.,.	
-aff_only	fam_pl	C0011K3	chr12:9779878:T:A	1,.,.	7	0.318	22	1.15	DB	448	9.0714	5.097	-0.4667	7	0.318	59.98	0	21.29	0.493	0.473	7.39	MQRankSum	A|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3054|-1||HGNC|47663|YES||||	-1	0.377381	0.419781	1544	1098	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.547619,.,.	
-aff_only	fam_pl	C0011KA	chr12:9779878:T:A	1,.,1	7	0.318	22	1.15	DB	448	9.0714	5.097	-0.4667	7	0.318	59.98	0	21.29	0.493	0.473	7.39	MQRankSum	A|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3054|-1||HGNC|47663|YES||||	-1	0.377381	0.419781	1544	1098	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,43	0.441176,.,0.581395	
-aff_only	fam_pl	IP00FNP	chr12:9779878:T:A	1,.,1	7	0.318	22	1.15	DB	448	9.0714	5.097	-0.4667	7	0.318	59.98	0	21.29	0.493	0.473	7.39	MQRankSum	A|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3054|-1||HGNC|47663|YES||||	-1	0.377381	0.419781	1544	1098	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			49,.,18	0.489796,.,0.555556	
-aff_only	fam_pl	IP00FNW	chr12:9779878:T:A	1,.,.	7	0.318	22	1.15	DB	448	9.0714	5.097	-0.4667	7	0.318	59.98	0	21.29	0.493	0.473	7.39	MQRankSum	A|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3054|-1||HGNC|47663|YES||||	-1	0.377381	0.419781	1544	1098	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			57,.,.	0.614035,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9779878:T:A	1,.,.	7	0.318	22	1.15	DB	448	9.0714	5.097	-0.4667	7	0.318	59.98	0	21.29	0.493	0.473	7.39	MQRankSum	A|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3054|-1||HGNC|47663|YES||||	-1	0.377381	0.419781	1544	1098	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			75,.,.	0.586667,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9780206:C:T	1,.,.	7	0.318	22	0	DB	463	9.0714	1.317	-0.4667	7	0.318	56.16	0	14.86	-0.038	0.615	-0.0261	MQ	T|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3382|-1||HGNC|47663|YES||||	-1	0.379998	0.422834	1668	1190	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.545455,.,.	
-aff_only	fam_pl	C0011K2	chr12:9780206:C:T	1,.,.	7	0.318	22	0	DB	463	9.0714	1.317	-0.4667	7	0.318	56.16	0	14.86	-0.038	0.615	-0.0261	MQ	T|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3382|-1||HGNC|47663|YES||||	-1	0.379998	0.422834	1668	1190	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.477273,.,.	
-aff_only	fam_pl	C0011K3	chr12:9780206:C:T	1,.,.	7	0.318	22	0	DB	463	9.0714	1.317	-0.4667	7	0.318	56.16	0	14.86	-0.038	0.615	-0.0261	MQ	T|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3382|-1||HGNC|47663|YES||||	-1	0.379998	0.422834	1668	1190	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			59,.,.	0.491525,.,.	
-aff_only	fam_pl	C0011KA	chr12:9780206:C:T	1,.,1	7	0.318	22	0	DB	463	9.0714	1.317	-0.4667	7	0.318	56.16	0	14.86	-0.038	0.615	-0.0261	MQ	T|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3382|-1||HGNC|47663|YES||||	-1	0.379998	0.422834	1668	1190	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			27,.,44	0.592593,.,0.477273	
-aff_only	fam_pl	IP00FNP	chr12:9780206:C:T	1,.,1	7	0.318	22	0	DB	463	9.0714	1.317	-0.4667	7	0.318	56.16	0	14.86	-0.038	0.615	-0.0261	MQ	T|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3382|-1||HGNC|47663|YES||||	-1	0.379998	0.422834	1668	1190	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			60,.,33	0.583333,.,0.545455	
-aff_only	fam_pl	IP00FNW	chr12:9780206:C:T	1,.,.	7	0.318	22	0	DB	463	9.0714	1.317	-0.4667	7	0.318	56.16	0	14.86	-0.038	0.615	-0.0261	MQ	T|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3382|-1||HGNC|47663|YES||||	-1	0.379998	0.422834	1668	1190	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.553191,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9780206:C:T	1,.,.	7	0.318	22	0	DB	463	9.0714	1.317	-0.4667	7	0.318	56.16	0	14.86	-0.038	0.615	-0.0261	MQ	T|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3382|-1||HGNC|47663|YES||||	-1	0.379998	0.422834	1668	1190	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,.	0.461538,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9780577:A:G	1,.,.	7	0.318	22	-1.863	DB	433	9.0714	10.22	-0.4667	7	0.318	53.72	-1.397	11.78	-0.118	0.395	-1.207	MQ	G|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3753|-1||HGNC|47663|YES||||	-1	0.379642	0.422698	1670	1189	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,.	0.475,.,.	
-aff_only	fam_pl	C0011K2	chr12:9780577:A:G	1,.,.	7	0.318	22	-1.863	DB	433	9.0714	10.22	-0.4667	7	0.318	53.72	-1.397	11.78	-0.118	0.395	-1.207	MQ	G|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3753|-1||HGNC|47663|YES||||	-1	0.379642	0.422698	1670	1189	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.542857,.,.	
-aff_only	fam_pl	C0011K3	chr12:9780577:A:G	1,.,.	7	0.318	22	-1.863	DB	433	9.0714	10.22	-0.4667	7	0.318	53.72	-1.397	11.78	-0.118	0.395	-1.207	MQ	G|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3753|-1||HGNC|47663|YES||||	-1	0.379642	0.422698	1670	1189	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.547619,.,.	
-aff_only	fam_pl	C0011KA	chr12:9780577:A:G	1,.,1	7	0.318	22	-1.863	DB	433	9.0714	10.22	-0.4667	7	0.318	53.72	-1.397	11.78	-0.118	0.395	-1.207	MQ	G|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3753|-1||HGNC|47663|YES||||	-1	0.379642	0.422698	1670	1189	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,35	0.366667,.,0.542857	
-aff_only	fam_pl	IP00FNP	chr12:9780577:A:G	1,.,1	7	0.318	22	-1.863	DB	433	9.0714	10.22	-0.4667	7	0.318	53.72	-1.397	11.78	-0.118	0.395	-1.207	MQ	G|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3753|-1||HGNC|47663|YES||||	-1	0.379642	0.422698	1670	1189	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,40	0.454545,.,0.475	
-aff_only	fam_pl	IP00FNW	chr12:9780577:A:G	1,.,.	7	0.318	22	-1.863	DB	433	9.0714	10.22	-0.4667	7	0.318	53.72	-1.397	11.78	-0.118	0.395	-1.207	MQ	G|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3753|-1||HGNC|47663|YES||||	-1	0.379642	0.422698	1670	1189	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.488372,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9780577:A:G	1,.,.	7	0.318	22	-1.863	DB	433	9.0714	10.22	-0.4667	7	0.318	53.72	-1.397	11.78	-0.118	0.395	-1.207	MQ	G|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3753|-1||HGNC|47663|YES||||	-1	0.379642	0.422698	1670	1189	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,.	0.392157,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9780843:T:C	1,.,.	7	0.318	22	-0.793	DB	448	9.0714	13.633	-0.4667	7	0.318	49.22	-0.287	12.96	0.147	0.321	-2.572	MQ	C|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||4019|-1||HGNC|47663|YES||||	11	0.378809	0.421603	1655	1174	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.393939,.,.	
-aff_only	fam_pl	C0011K2	chr12:9780843:T:C	1,.,.	7	0.318	22	-0.793	DB	448	9.0714	13.633	-0.4667	7	0.318	49.22	-0.287	12.96	0.147	0.321	-2.572	MQ	C|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||4019|-1||HGNC|47663|YES||||	11	0.378809	0.421603	1655	1174	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.390244,.,.	
-aff_only	fam_pl	C0011K3	chr12:9780843:T:C	1,.,.	7	0.318	22	-0.793	DB	448	9.0714	13.633	-0.4667	7	0.318	49.22	-0.287	12.96	0.147	0.321	-2.572	MQ	C|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||4019|-1||HGNC|47663|YES||||	11	0.378809	0.421603	1655	1174	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,.	0.65625,.,.	
-aff_only	fam_pl	C0011KA	chr12:9780843:T:C	1,.,1	7	0.318	22	-0.793	DB	448	9.0714	13.633	-0.4667	7	0.318	49.22	-0.287	12.96	0.147	0.321	-2.572	MQ	C|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||4019|-1||HGNC|47663|YES||||	11	0.378809	0.421603	1655	1174	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,41	0.527778,.,0.390244	
-aff_only	fam_pl	IP00FNP	chr12:9780843:T:C	1,.,1	7	0.318	22	-0.793	DB	448	9.0714	13.633	-0.4667	7	0.318	49.22	-0.287	12.96	0.147	0.321	-2.572	MQ	C|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||4019|-1||HGNC|47663|YES||||	11	0.378809	0.421603	1655	1174	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,33	0.4375,.,0.393939	
-aff_only	fam_pl	IP00FNW	chr12:9780843:T:C	1,.,.	7	0.318	22	-0.793	DB	448	9.0714	13.633	-0.4667	7	0.318	49.22	-0.287	12.96	0.147	0.321	-2.572	MQ	C|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||4019|-1||HGNC|47663|YES||||	11	0.378809	0.421603	1655	1174	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.473684,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9780843:T:C	1,.,.	7	0.318	22	-0.793	DB	448	9.0714	13.633	-0.4667	7	0.318	49.22	-0.287	12.96	0.147	0.321	-2.572	MQ	C|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||4019|-1||HGNC|47663|YES||||	11	0.378809	0.421603	1655	1174	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			60,.,.	0.516667,.,.	
-aff_only	fam_pl	C0011JZ	chr12:9997789:A:T	1,.,.	7	0.318	22	0	DB	472	9.0714	0	-0.4667	7	0.318	59.39	0	14.13	-0.367	0.71	6.27	MQRankSum	T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279544|protein_coding|||||||||||183|1||HGNC|13342|YES|CCDS41750.1|||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279545|nonsense_mediated_decay|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000324214|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000354855|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000535631|nonsense_mediated_decay|||||||||||198|1|cds_start_NF|HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000537723|protein_coding|||||||||||533|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000545196|nonsense_mediated_decay|||||||||||533|1||HGNC|13342|||||	-1	0.243354	0.298999	721	601	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.5,.,.	
-aff_only	fam_pl	C0011K2	chr12:9997789:A:T	1,.,.	7	0.318	22	0	DB	472	9.0714	0	-0.4667	7	0.318	59.39	0	14.13	-0.367	0.71	6.27	MQRankSum	T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279544|protein_coding|||||||||||183|1||HGNC|13342|YES|CCDS41750.1|||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279545|nonsense_mediated_decay|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000324214|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000354855|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000535631|nonsense_mediated_decay|||||||||||198|1|cds_start_NF|HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000537723|protein_coding|||||||||||533|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000545196|nonsense_mediated_decay|||||||||||533|1||HGNC|13342|||||	-1	0.243354	0.298999	721	601	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.55814,.,.	
-aff_only	fam_pl	C0011K3	chr12:9997789:A:T	1,.,.	7	0.318	22	0	DB	472	9.0714	0	-0.4667	7	0.318	59.39	0	14.13	-0.367	0.71	6.27	MQRankSum	T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279544|protein_coding|||||||||||183|1||HGNC|13342|YES|CCDS41750.1|||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279545|nonsense_mediated_decay|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000324214|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000354855|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000535631|nonsense_mediated_decay|||||||||||198|1|cds_start_NF|HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000537723|protein_coding|||||||||||533|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000545196|nonsense_mediated_decay|||||||||||533|1||HGNC|13342|||||	-1	0.243354	0.298999	721	601	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.405405,.,.	
-aff_only	fam_pl	C0011KA	chr12:9997789:A:T	1,.,1	7	0.318	22	0	DB	472	9.0714	0	-0.4667	7	0.318	59.39	0	14.13	-0.367	0.71	6.27	MQRankSum	T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279544|protein_coding|||||||||||183|1||HGNC|13342|YES|CCDS41750.1|||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279545|nonsense_mediated_decay|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000324214|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000354855|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000535631|nonsense_mediated_decay|||||||||||198|1|cds_start_NF|HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000537723|protein_coding|||||||||||533|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000545196|nonsense_mediated_decay|||||||||||533|1||HGNC|13342|||||	-1	0.243354	0.298999	721	601	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,43	0.588235,.,0.55814	
-aff_only	fam_pl	IP00FNP	chr12:9997789:A:T	1,.,1	7	0.318	22	0	DB	472	9.0714	0	-0.4667	7	0.318	59.39	0	14.13	-0.367	0.71	6.27	MQRankSum	T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279544|protein_coding|||||||||||183|1||HGNC|13342|YES|CCDS41750.1|||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279545|nonsense_mediated_decay|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000324214|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000354855|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000535631|nonsense_mediated_decay|||||||||||198|1|cds_start_NF|HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000537723|protein_coding|||||||||||533|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000545196|nonsense_mediated_decay|||||||||||533|1||HGNC|13342|||||	-1	0.243354	0.298999	721	601	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			67,.,36	0.477612,.,0.5	
-aff_only	fam_pl	IP00FNW	chr12:9997789:A:T	1,.,.	7	0.318	22	0	DB	472	9.0714	0	-0.4667	7	0.318	59.39	0	14.13	-0.367	0.71	6.27	MQRankSum	T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279544|protein_coding|||||||||||183|1||HGNC|13342|YES|CCDS41750.1|||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279545|nonsense_mediated_decay|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000324214|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000354855|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000535631|nonsense_mediated_decay|||||||||||198|1|cds_start_NF|HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000537723|protein_coding|||||||||||533|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000545196|nonsense_mediated_decay|||||||||||533|1||HGNC|13342|||||	-1	0.243354	0.298999	721	601	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			55,.,.	0.490909,.,.	
-aff_only	fam_pl	IP00FNY	chr12:9997789:A:T	1,.,.	7	0.318	22	0	DB	472	9.0714	0	-0.4667	7	0.318	59.39	0	14.13	-0.367	0.71	6.27	MQRankSum	T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279544|protein_coding|||||||||||183|1||HGNC|13342|YES|CCDS41750.1|||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279545|nonsense_mediated_decay|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000324214|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000354855|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000535631|nonsense_mediated_decay|||||||||||198|1|cds_start_NF|HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000537723|protein_coding|||||||||||533|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000545196|nonsense_mediated_decay|||||||||||533|1||HGNC|13342|||||	-1	0.243354	0.298999	721	601	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			59,.,.	0.474576,.,.	
-aff_only	fam_pl	C0011JZ	chr12:10003185:C:T	1,.,.	7	0.318	22	1.05	DB	470	9.0714	9.244	-0.4667	7	0.318	60.03	0	14.36	-0.293	1.101	7.49	MQRankSum	T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000228438|protein_coding|||||||||||2398|-1||HGNC|2053|YES|CCDS8605.1|||,T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000538152|protein_coding|||||||||||2547|-1||HGNC|2053|||||	-1	0.0481495	0.0645566	30	26	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.567568,.,.	
-aff_only	fam_pl	C0011K2	chr12:10003185:C:T	1,.,.	7	0.318	22	1.05	DB	470	9.0714	9.244	-0.4667	7	0.318	60.03	0	14.36	-0.293	1.101	7.49	MQRankSum	T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000228438|protein_coding|||||||||||2398|-1||HGNC|2053|YES|CCDS8605.1|||,T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000538152|protein_coding|||||||||||2547|-1||HGNC|2053|||||	-1	0.0481495	0.0645566	30	26	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,.	0.5,.,.	
-aff_only	fam_pl	C0011K3	chr12:10003185:C:T	1,.,.	7	0.318	22	1.05	DB	470	9.0714	9.244	-0.4667	7	0.318	60.03	0	14.36	-0.293	1.101	7.49	MQRankSum	T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000228438|protein_coding|||||||||||2398|-1||HGNC|2053|YES|CCDS8605.1|||,T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000538152|protein_coding|||||||||||2547|-1||HGNC|2053|||||	-1	0.0481495	0.0645566	30	26	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.451613,.,.	
-aff_only	fam_pl	C0011KA	chr12:10003185:C:T	1,.,1	7	0.318	22	1.05	DB	470	9.0714	9.244	-0.4667	7	0.318	60.03	0	14.36	-0.293	1.101	7.49	MQRankSum	T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000228438|protein_coding|||||||||||2398|-1||HGNC|2053|YES|CCDS8605.1|||,T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000538152|protein_coding|||||||||||2547|-1||HGNC|2053|||||	-1	0.0481495	0.0645566	30	26	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,40	0.529412,.,0.5	
-aff_only	fam_pl	IP00FNP	chr12:10003185:C:T	1,.,1	7	0.318	22	1.05	DB	470	9.0714	9.244	-0.4667	7	0.318	60.03	0	14.36	-0.293	1.101	7.49	MQRankSum	T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000228438|protein_coding|||||||||||2398|-1||HGNC|2053|YES|CCDS8605.1|||,T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000538152|protein_coding|||||||||||2547|-1||HGNC|2053|||||	-1	0.0481495	0.0645566	30	26	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,37	0.5,.,0.567568	
-aff_only	fam_pl	IP00FNW	chr12:10003185:C:T	1,.,.	7	0.318	22	1.05	DB	470	9.0714	9.244	-0.4667	7	0.318	60.03	0	14.36	-0.293	1.101	7.49	MQRankSum	T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000228438|protein_coding|||||||||||2398|-1||HGNC|2053|YES|CCDS8605.1|||,T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000538152|protein_coding|||||||||||2547|-1||HGNC|2053|||||	-1	0.0481495	0.0645566	30	26	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.515152,.,.	
-aff_only	fam_pl	IP00FNY	chr12:10003185:C:T	1,.,.	7	0.318	22	1.05	DB	470	9.0714	9.244	-0.4667	7	0.318	60.03	0	14.36	-0.293	1.101	7.49	MQRankSum	T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000228438|protein_coding|||||||||||2398|-1||HGNC|2053|YES|CCDS8605.1|||,T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000538152|protein_coding|||||||||||2547|-1||HGNC|2053|||||	-1	0.0481495	0.0645566	30	26	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			83,.,.	0.506024,.,.	
-aff_only	fam_pl	C0011JZ	chr12:10177037:G:A	1,.,.	7	0.318	22	0	DB	503	9.0714	1.729	-0.4667	7	0.318	60	0	14.78	-0.345	0.772	23.72	MQRankSum	A|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-133L14.5|ENSG00000256803|Transcript|ENST00000544225|antisense||2/2|ENST00000544225.1:n.248+3477C>T|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.304713	0.348498	1069	821	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.511628,.,.	
-aff_only	fam_pl	C0011K2	chr12:10177037:G:A	1,.,.	7	0.318	22	0	DB	503	9.0714	1.729	-0.4667	7	0.318	60	0	14.78	-0.345	0.772	23.72	MQRankSum	A|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-133L14.5|ENSG00000256803|Transcript|ENST00000544225|antisense||2/2|ENST00000544225.1:n.248+3477C>T|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.304713	0.348498	1069	821	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,.	0.5,.,.	
-aff_only	fam_pl	C0011K3	chr12:10177037:G:A	1,.,.	7	0.318	22	0	DB	503	9.0714	1.729	-0.4667	7	0.318	60	0	14.78	-0.345	0.772	23.72	MQRankSum	A|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-133L14.5|ENSG00000256803|Transcript|ENST00000544225|antisense||2/2|ENST00000544225.1:n.248+3477C>T|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.304713	0.348498	1069	821	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.538462,.,.	
-aff_only	fam_pl	C0011KA	chr12:10177037:G:A	1,.,1	7	0.318	22	0	DB	503	9.0714	1.729	-0.4667	7	0.318	60	0	14.78	-0.345	0.772	23.72	MQRankSum	A|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-133L14.5|ENSG00000256803|Transcript|ENST00000544225|antisense||2/2|ENST00000544225.1:n.248+3477C>T|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.304713	0.348498	1069	821	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,46	0.464286,.,0.5	
-aff_only	fam_pl	IP00FNP	chr12:10177037:G:A	1,.,1	7	0.318	22	0	DB	503	9.0714	1.729	-0.4667	7	0.318	60	0	14.78	-0.345	0.772	23.72	MQRankSum	A|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-133L14.5|ENSG00000256803|Transcript|ENST00000544225|antisense||2/2|ENST00000544225.1:n.248+3477C>T|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.304713	0.348498	1069	821	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			66,.,43	0.454545,.,0.511628	
-aff_only	fam_pl	IP00FNW	chr12:10177037:G:A	1,.,.	7	0.318	22	0	DB	503	9.0714	1.729	-0.4667	7	0.318	60	0	14.78	-0.345	0.772	23.72	MQRankSum	A|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-133L14.5|ENSG00000256803|Transcript|ENST00000544225|antisense||2/2|ENST00000544225.1:n.248+3477C>T|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.304713	0.348498	1069	821	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			67,.,.	0.522388,.,.	
-aff_only	fam_pl	IP00FNY	chr12:10177037:G:A	1,.,.	7	0.318	22	0	DB	503	9.0714	1.729	-0.4667	7	0.318	60	0	14.78	-0.345	0.772	23.72	MQRankSum	A|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-133L14.5|ENSG00000256803|Transcript|ENST00000544225|antisense||2/2|ENST00000544225.1:n.248+3477C>T|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.304713	0.348498	1069	821	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			66,.,.	0.606061,.,.	
-aff_only	fam_pl	C0011JZ	chr16:80636220:A:T	1,.,.	7	0.318	22	-0.408	DB	457	9.0714	2.414	-0.4667	7	0.318	59.96	0	15.37	0.505	0.831	8.64	MQRankSum	T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*2065T>A||3742/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.180142	0.166176	396	214	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.606061,.,.	
-aff_only	fam_pl	C0011K2	chr16:80636220:A:T	1,.,.	7	0.318	22	-0.408	DB	457	9.0714	2.414	-0.4667	7	0.318	59.96	0	15.37	0.505	0.831	8.64	MQRankSum	T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*2065T>A||3742/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.180142	0.166176	396	214	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.534884,.,.	
-aff_only	fam_pl	C0011K3	chr16:80636220:A:T	1,.,.	7	0.318	22	-0.408	DB	457	9.0714	2.414	-0.4667	7	0.318	59.96	0	15.37	0.505	0.831	8.64	MQRankSum	T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*2065T>A||3742/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.180142	0.166176	396	214	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.806452,.,.	
-aff_only	fam_pl	C0011KA	chr16:80636220:A:T	1,.,1	7	0.318	22	-0.408	DB	457	9.0714	2.414	-0.4667	7	0.318	59.96	0	15.37	0.505	0.831	8.64	MQRankSum	T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*2065T>A||3742/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.180142	0.166176	396	214	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,43	0.452381,.,0.534884	
-aff_only	fam_pl	IP00FNP	chr16:80636220:A:T	1,.,1	7	0.318	22	-0.408	DB	457	9.0714	2.414	-0.4667	7	0.318	59.96	0	15.37	0.505	0.831	8.64	MQRankSum	T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*2065T>A||3742/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.180142	0.166176	396	214	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			65,.,33	0.507692,.,0.606061	
-aff_only	fam_pl	IP00FNW	chr16:80636220:A:T	1,.,.	7	0.318	22	-0.408	DB	457	9.0714	2.414	-0.4667	7	0.318	59.96	0	15.37	0.505	0.831	8.64	MQRankSum	T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*2065T>A||3742/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.180142	0.166176	396	214	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.477273,.,.	
-aff_only	fam_pl	IP00FNY	chr16:80636220:A:T	1,.,.	7	0.318	22	-0.408	DB	457	9.0714	2.414	-0.4667	7	0.318	59.96	0	15.37	0.505	0.831	8.64	MQRankSum	T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*2065T>A||3742/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.180142	0.166176	396	214	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			58,.,.	0.517241,.,.	
-aff_only	fam_pl	C0011JZ	chr16:80636297:C:G	1,.,.	7	0.318	22	1.31	DB	457	9.0714	4.295	-0.4667	7	0.318	59.96	0	13.62	-0.406	0.84	8.59	MQRankSum	G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1988G>C||3665/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.219375	0.169686	618	219	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.642857,.,.	
-aff_only	fam_pl	C0011K2	chr16:80636297:C:G	1,.,.	7	0.318	22	1.31	DB	457	9.0714	4.295	-0.4667	7	0.318	59.96	0	13.62	-0.406	0.84	8.59	MQRankSum	G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1988G>C||3665/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.219375	0.169686	618	219	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.641026,.,.	
-aff_only	fam_pl	C0011K3	chr16:80636297:C:G	1,.,.	7	0.318	22	1.31	DB	457	9.0714	4.295	-0.4667	7	0.318	59.96	0	13.62	-0.406	0.84	8.59	MQRankSum	G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1988G>C||3665/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.219375	0.169686	618	219	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.611111,.,.	
-aff_only	fam_pl	C0011KA	chr16:80636297:C:G	1,.,1	7	0.318	22	1.31	DB	457	9.0714	4.295	-0.4667	7	0.318	59.96	0	13.62	-0.406	0.84	8.59	MQRankSum	G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1988G>C||3665/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.219375	0.169686	618	219	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,39	0.5,.,0.641026	
-aff_only	fam_pl	IP00FNP	chr16:80636297:C:G	1,.,1	7	0.318	22	1.31	DB	457	9.0714	4.295	-0.4667	7	0.318	59.96	0	13.62	-0.406	0.84	8.59	MQRankSum	G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1988G>C||3665/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.219375	0.169686	618	219	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			53,.,28	0.377358,.,0.642857	
-aff_only	fam_pl	IP00FNW	chr16:80636297:C:G	1,.,.	7	0.318	22	1.31	DB	457	9.0714	4.295	-0.4667	7	0.318	59.96	0	13.62	-0.406	0.84	8.59	MQRankSum	G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1988G>C||3665/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.219375	0.169686	618	219	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,.	0.4,.,.	
-aff_only	fam_pl	IP00FNY	chr16:80636297:C:G	1,.,.	7	0.318	22	1.31	DB	457	9.0714	4.295	-0.4667	7	0.318	59.96	0	13.62	-0.406	0.84	8.59	MQRankSum	G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1988G>C||3665/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.219375	0.169686	618	219	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			70,.,.	0.442857,.,.	
-aff_only	fam_pl	C0011JZ	chr16:80636940:G:A	1,.,.	7	0.318	22	0.786	DB	495	9.0714	0.388	-0.4667	7	0.318	60.16	0	15.67	0.582	0.668	7.82	MQRankSum	A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1345C>T||3022/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.170014	0.156388	356	187	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.580645,.,.	
-aff_only	fam_pl	C0011K2	chr16:80636940:G:A	1,.,.	7	0.318	22	0.786	DB	495	9.0714	0.388	-0.4667	7	0.318	60.16	0	15.67	0.582	0.668	7.82	MQRankSum	A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1345C>T||3022/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.170014	0.156388	356	187	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,.	0.576923,.,.	
-aff_only	fam_pl	C0011K3	chr16:80636940:G:A	1,.,.	7	0.318	22	0.786	DB	495	9.0714	0.388	-0.4667	7	0.318	60.16	0	15.67	0.582	0.668	7.82	MQRankSum	A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1345C>T||3022/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.170014	0.156388	356	187	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,.	0.5,.,.	
-aff_only	fam_pl	C0011KA	chr16:80636940:G:A	1,.,1	7	0.318	22	0.786	DB	495	9.0714	0.388	-0.4667	7	0.318	60.16	0	15.67	0.582	0.668	7.82	MQRankSum	A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1345C>T||3022/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.170014	0.156388	356	187	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,52	0.72973,.,0.576923	
-aff_only	fam_pl	IP00FNP	chr16:80636940:G:A	1,.,1	7	0.318	22	0.786	DB	495	9.0714	0.388	-0.4667	7	0.318	60.16	0	15.67	0.582	0.668	7.82	MQRankSum	A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1345C>T||3022/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.170014	0.156388	356	187	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			68,.,31	0.529412,.,0.580645	
-aff_only	fam_pl	IP00FNW	chr16:80636940:G:A	1,.,.	7	0.318	22	0.786	DB	495	9.0714	0.388	-0.4667	7	0.318	60.16	0	15.67	0.582	0.668	7.82	MQRankSum	A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1345C>T||3022/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.170014	0.156388	356	187	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,.	0.395833,.,.	
-aff_only	fam_pl	IP00FNY	chr16:80636940:G:A	1,.,.	7	0.318	22	0.786	DB	495	9.0714	0.388	-0.4667	7	0.318	60.16	0	15.67	0.582	0.668	7.82	MQRankSum	A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1345C>T||3022/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.170014	0.156388	356	187	36	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			61,.,.	0.57377,.,.	
-aff_only	fam_pl	C0011JZ	chr16:80639833:T:G	1,.,.	7	0.318	22	0.055	DB	482	9.0714	0.399	-0.4667	7	0.318	60	0	20.66	0.352	0.704	22.13	MQRankSum	G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1390A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.222752	0.17895	592	223	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,.	0.529412,.,.	
-aff_only	fam_pl	C0011K2	chr16:80639833:T:G	1,.,.	7	0.318	22	0.055	DB	482	9.0714	0.399	-0.4667	7	0.318	60	0	20.66	0.352	0.704	22.13	MQRankSum	G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1390A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.222752	0.17895	592	223	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,.	0.46,.,.	
-aff_only	fam_pl	C0011K3	chr16:80639833:T:G	1,.,.	7	0.318	22	0.055	DB	482	9.0714	0.399	-0.4667	7	0.318	60	0	20.66	0.352	0.704	22.13	MQRankSum	G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1390A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.222752	0.17895	592	223	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.5,.,.	
-aff_only	fam_pl	C0011KA	chr16:80639833:T:G	1,.,1	7	0.318	22	0.055	DB	482	9.0714	0.399	-0.4667	7	0.318	60	0	20.66	0.352	0.704	22.13	MQRankSum	G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1390A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.222752	0.17895	592	223	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,50	0.511111,.,0.46	
-aff_only	fam_pl	IP00FNP	chr16:80639833:T:G	1,.,1	7	0.318	22	0.055	DB	482	9.0714	0.399	-0.4667	7	0.318	60	0	20.66	0.352	0.704	22.13	MQRankSum	G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1390A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.222752	0.17895	592	223	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			62,.,34	0.5,.,0.529412	
-aff_only	fam_pl	IP00FNW	chr16:80639833:T:G	1,.,.	7	0.318	22	0.055	DB	482	9.0714	0.399	-0.4667	7	0.318	60	0	20.66	0.352	0.704	22.13	MQRankSum	G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1390A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.222752	0.17895	592	223	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.681818,.,.	
-aff_only	fam_pl	IP00FNY	chr16:80639833:T:G	1,.,.	7	0.318	22	0.055	DB	482	9.0714	0.399	-0.4667	7	0.318	60	0	20.66	0.352	0.704	22.13	MQRankSum	G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1390A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.222752	0.17895	592	223	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			56,.,.	0.5,.,.	
-aff_only	fam_pl	C0011JZ	chr16:80639836:G:A	1,.,.	7	0.318	22	0.752	DB	483	9.0714	0.833	-0.4667	7	0.318	60	0	20.57	0.022	0.74	22.1	MQRankSum	A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1393C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.190708	0.178351	423	222	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,.	0.529412,.,.	
-aff_only	fam_pl	C0011K2	chr16:80639836:G:A	1,.,.	7	0.318	22	0.752	DB	483	9.0714	0.833	-0.4667	7	0.318	60	0	20.57	0.022	0.74	22.1	MQRankSum	A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1393C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.190708	0.178351	423	222	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,.	0.46,.,.	
-aff_only	fam_pl	C0011K3	chr16:80639836:G:A	1,.,.	7	0.318	22	0.752	DB	483	9.0714	0.833	-0.4667	7	0.318	60	0	20.57	0.022	0.74	22.1	MQRankSum	A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1393C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.190708	0.178351	423	222	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.5,.,.	
-aff_only	fam_pl	C0011KA	chr16:80639836:G:A	1,.,1	7	0.318	22	0.752	DB	483	9.0714	0.833	-0.4667	7	0.318	60	0	20.57	0.022	0.74	22.1	MQRankSum	A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1393C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.190708	0.178351	423	222	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,50	0.533333,.,0.46	
-aff_only	fam_pl	IP00FNP	chr16:80639836:G:A	1,.,1	7	0.318	22	0.752	DB	483	9.0714	0.833	-0.4667	7	0.318	60	0	20.57	0.022	0.74	22.1	MQRankSum	A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1393C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.190708	0.178351	423	222	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			61,.,34	0.491803,.,0.529412	
-aff_only	fam_pl	IP00FNW	chr16:80639836:G:A	1,.,.	7	0.318	22	0.752	DB	483	9.0714	0.833	-0.4667	7	0.318	60	0	20.57	0.022	0.74	22.1	MQRankSum	A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1393C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.190708	0.178351	423	222	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.666667,.,.	
-aff_only	fam_pl	IP00FNY	chr16:80639836:G:A	1,.,.	7	0.318	22	0.752	DB	483	9.0714	0.833	-0.4667	7	0.318	60	0	20.57	0.022	0.74	22.1	MQRankSum	A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1393C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.190708	0.178351	423	222	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			57,.,.	0.508772,.,.	
-aff_only	fam_pl	C0011JZ	chr16:80639841:G:A	1,.,.	7	0.318	22	0	DB	479	9.0714	0	-0.4667	7	0.318	60	0	20.63	0.07	0.693	22.19	MQRankSum	A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1398C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.222883	0.179213	593	224	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.514286,.,.	
-aff_only	fam_pl	C0011K2	chr16:80639841:G:A	1,.,.	7	0.318	22	0	DB	479	9.0714	0	-0.4667	7	0.318	60	0	20.63	0.07	0.693	22.19	MQRankSum	A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1398C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.222883	0.179213	593	224	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,.	0.45098,.,.	
-aff_only	fam_pl	C0011K3	chr16:80639841:G:A	1,.,.	7	0.318	22	0	DB	479	9.0714	0	-0.4667	7	0.318	60	0	20.63	0.07	0.693	22.19	MQRankSum	A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1398C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.222883	0.179213	593	224	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.486486,.,.	
-aff_only	fam_pl	C0011KA	chr16:80639841:G:A	1,.,1	7	0.318	22	0	DB	479	9.0714	0	-0.4667	7	0.318	60	0	20.63	0.07	0.693	22.19	MQRankSum	A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1398C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.222883	0.179213	593	224	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,51	0.52381,.,0.45098	
-aff_only	fam_pl	IP00FNP	chr16:80639841:G:A	1,.,1	7	0.318	22	0	DB	479	9.0714	0	-0.4667	7	0.318	60	0	20.63	0.07	0.693	22.19	MQRankSum	A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1398C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.222883	0.179213	593	224	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			62,.,35	0.483871,.,0.514286	
-aff_only	fam_pl	IP00FNW	chr16:80639841:G:A	1,.,.	7	0.318	22	0	DB	479	9.0714	0	-0.4667	7	0.318	60	0	20.63	0.07	0.693	22.19	MQRankSum	A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1398C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.222883	0.179213	593	224	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.666667,.,.	
-aff_only	fam_pl	IP00FNY	chr16:80639841:G:A	1,.,.	7	0.318	22	0	DB	479	9.0714	0	-0.4667	7	0.318	60	0	20.63	0.07	0.693	22.19	MQRankSum	A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1398C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.222883	0.179213	593	224	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			54,.,.	0.481481,.,.	
-aff_only	fam_pl	C0011JZ	chr16:80834946:T:G	1,.,.	7	0.318	22	-0.806	DB	484	9.0714	2.88	-0.4667	7	0.318	60	0	13.07	0.217	0.863	23.42	MQRankSum	G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||1/7|ENST00000562812.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||1/7|ENST00000563890.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||1/7|ENST00000566173.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||1/6|ENST00000570137.2:c.24+3101A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.283008	0.266613	871	480	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.435897,.,.	
-aff_only	fam_pl	C0011K2	chr16:80834946:T:G	1,.,.	7	0.318	22	-0.806	DB	484	9.0714	2.88	-0.4667	7	0.318	60	0	13.07	0.217	0.863	23.42	MQRankSum	G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||1/7|ENST00000562812.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||1/7|ENST00000563890.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||1/7|ENST00000566173.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||1/6|ENST00000570137.2:c.24+3101A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.283008	0.266613	871	480	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			56,.,.	0.392857,.,.	
-aff_only	fam_pl	C0011K3	chr16:80834946:T:G	1,.,.	7	0.318	22	-0.806	DB	484	9.0714	2.88	-0.4667	7	0.318	60	0	13.07	0.217	0.863	23.42	MQRankSum	G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||1/7|ENST00000562812.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||1/7|ENST00000563890.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||1/7|ENST00000566173.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||1/6|ENST00000570137.2:c.24+3101A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.283008	0.266613	871	480	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,.	0.533333,.,.	
-aff_only	fam_pl	C0011KA	chr16:80834946:T:G	1,.,1	7	0.318	22	-0.806	DB	484	9.0714	2.88	-0.4667	7	0.318	60	0	13.07	0.217	0.863	23.42	MQRankSum	G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||1/7|ENST00000562812.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||1/7|ENST00000563890.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||1/7|ENST00000566173.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||1/6|ENST00000570137.2:c.24+3101A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.283008	0.266613	871	480	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,56	0.392857,.,0.392857	
-aff_only	fam_pl	IP00FNP	chr16:80834946:T:G	1,.,1	7	0.318	22	-0.806	DB	484	9.0714	2.88	-0.4667	7	0.318	60	0	13.07	0.217	0.863	23.42	MQRankSum	G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||1/7|ENST00000562812.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||1/7|ENST00000563890.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||1/7|ENST00000566173.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||1/6|ENST00000570137.2:c.24+3101A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.283008	0.266613	871	480	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			65,.,39	0.6,.,0.435897	
-aff_only	fam_pl	IP00FNW	chr16:80834946:T:G	1,.,.	7	0.318	22	-0.806	DB	484	9.0714	2.88	-0.4667	7	0.318	60	0	13.07	0.217	0.863	23.42	MQRankSum	G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||1/7|ENST00000562812.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||1/7|ENST00000563890.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||1/7|ENST00000566173.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||1/6|ENST00000570137.2:c.24+3101A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.283008	0.266613	871	480	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,.	0.490196,.,.	
-aff_only	fam_pl	IP00FNY	chr16:80834946:T:G	1,.,.	7	0.318	22	-0.806	DB	484	9.0714	2.88	-0.4667	7	0.318	60	0	13.07	0.217	0.863	23.42	MQRankSum	G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||1/7|ENST00000562812.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||1/7|ENST00000563890.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||1/7|ENST00000566173.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||1/6|ENST00000570137.2:c.24+3101A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||	-1	0.283008	0.266613	871	480	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			72,.,.	0.486111,.,.	
-aff_only	fam_pl	C0011JZ	chr16:81393010:G:GT	1,.,.	7	0.318	22	0.16	DB	342	9.0714	15.728	-0.4377	7	0.318	59.94	0	8.46	0.491	1.837	5.1	MQRankSum	T|intron_variant|MODIFIER|GAN|ENSG00000261609|Transcript|ENST00000568107|protein_coding||5/10|ENST00000568107.2:c.973+1491dup|||||||||1||HGNC|4137|YES|CCDS10935.1|||	-1	0.433732	0.491475	1376	1103	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			16,.,.	0.5625,.,.	
-aff_only	fam_pl	C0011K2	chr16:81393010:G:GT	1,.,.	7	0.318	22	0.16	DB	342	9.0714	15.728	-0.4377	7	0.318	59.94	0	8.46	0.491	1.837	5.1	MQRankSum	T|intron_variant|MODIFIER|GAN|ENSG00000261609|Transcript|ENST00000568107|protein_coding||5/10|ENST00000568107.2:c.973+1491dup|||||||||1||HGNC|4137|YES|CCDS10935.1|||	-1	0.433732	0.491475	1376	1103	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			13,.,.	0.692308,.,.	
-aff_only	fam_pl	C0011K3	chr16:81393010:G:GT	1,.,.	7	0.318	22	0.16	DB	342	9.0714	15.728	-0.4377	7	0.318	59.94	0	8.46	0.491	1.837	5.1	MQRankSum	T|intron_variant|MODIFIER|GAN|ENSG00000261609|Transcript|ENST00000568107|protein_coding||5/10|ENST00000568107.2:c.973+1491dup|||||||||1||HGNC|4137|YES|CCDS10935.1|||	-1	0.433732	0.491475	1376	1103	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			22,.,.	0.363636,.,.	
-aff_only	fam_pl	C0011KA	chr16:81393010:G:GT	1,.,1	7	0.318	22	0.16	DB	342	9.0714	15.728	-0.4377	7	0.318	59.94	0	8.46	0.491	1.837	5.1	MQRankSum	T|intron_variant|MODIFIER|GAN|ENSG00000261609|Transcript|ENST00000568107|protein_coding||5/10|ENST00000568107.2:c.973+1491dup|||||||||1||HGNC|4137|YES|CCDS10935.1|||	-1	0.433732	0.491475	1376	1103	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,13	0.357143,.,0.692308	
-aff_only	fam_pl	IP00FNP	chr16:81393010:G:GT	1,.,1	7	0.318	22	0.16	DB	342	9.0714	15.728	-0.4377	7	0.318	59.94	0	8.46	0.491	1.837	5.1	MQRankSum	T|intron_variant|MODIFIER|GAN|ENSG00000261609|Transcript|ENST00000568107|protein_coding||5/10|ENST00000568107.2:c.973+1491dup|||||||||1||HGNC|4137|YES|CCDS10935.1|||	-1	0.433732	0.491475	1376	1103	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			11,.,16	0.818182,.,0.5625	
-aff_only	fam_pl	IP00FNW	chr16:81393010:G:GT	1,.,.	7	0.318	22	0.16	DB	342	9.0714	15.728	-0.4377	7	0.318	59.94	0	8.46	0.491	1.837	5.1	MQRankSum	T|intron_variant|MODIFIER|GAN|ENSG00000261609|Transcript|ENST00000568107|protein_coding||5/10|ENST00000568107.2:c.973+1491dup|||||||||1||HGNC|4137|YES|CCDS10935.1|||	-1	0.433732	0.491475	1376	1103	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			13,.,.	0.615385,.,.	
-aff_only	fam_pl	IP00FNY	chr16:81393010:G:GT	1,.,.	7	0.318	22	0.16	DB	342	9.0714	15.728	-0.4377	7	0.318	59.94	0	8.46	0.491	1.837	5.1	MQRankSum	T|intron_variant|MODIFIER|GAN|ENSG00000261609|Transcript|ENST00000568107|protein_coding||5/10|ENST00000568107.2:c.973+1491dup|||||||||1||HGNC|4137|YES|CCDS10935.1|||	-1	0.433732	0.491475	1376	1103	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			24,.,.	0.583333,.,.	
-aff_only	fam_pl	C0011JZ	chr16:82152710:G:T	1,.,.	7	0.318	22	-1.398	DB	501	9.0714	9.547	-0.4667	7	0.318	60	0	14.06	0.595	0.405	23.96	MQRankSum	T|downstream_gene_variant|MODIFIER|CTD-2588J6.1|ENSG00000260161|Transcript|ENST00000566728|processed_pseudogene|||||||||||1533|-1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+20484C>A|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.170261	0.200132	303	265	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.5,.,.	
-aff_only	fam_pl	C0011K2	chr16:82152710:G:T	1,.,.	7	0.318	22	-1.398	DB	501	9.0714	9.547	-0.4667	7	0.318	60	0	14.06	0.595	0.405	23.96	MQRankSum	T|downstream_gene_variant|MODIFIER|CTD-2588J6.1|ENSG00000260161|Transcript|ENST00000566728|processed_pseudogene|||||||||||1533|-1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+20484C>A|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.170261	0.200132	303	265	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			54,.,.	0.555556,.,.	
-aff_only	fam_pl	C0011K3	chr16:82152710:G:T	1,.,.	7	0.318	22	-1.398	DB	501	9.0714	9.547	-0.4667	7	0.318	60	0	14.06	0.595	0.405	23.96	MQRankSum	T|downstream_gene_variant|MODIFIER|CTD-2588J6.1|ENSG00000260161|Transcript|ENST00000566728|processed_pseudogene|||||||||||1533|-1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+20484C>A|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.170261	0.200132	303	265	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.512195,.,.	
-aff_only	fam_pl	C0011KA	chr16:82152710:G:T	1,.,1	7	0.318	22	-1.398	DB	501	9.0714	9.547	-0.4667	7	0.318	60	0	14.06	0.595	0.405	23.96	MQRankSum	T|downstream_gene_variant|MODIFIER|CTD-2588J6.1|ENSG00000260161|Transcript|ENST00000566728|processed_pseudogene|||||||||||1533|-1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+20484C>A|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.170261	0.200132	303	265	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,54	0.5,.,0.555556	
-aff_only	fam_pl	IP00FNP	chr16:82152710:G:T	1,.,1	7	0.318	22	-1.398	DB	501	9.0714	9.547	-0.4667	7	0.318	60	0	14.06	0.595	0.405	23.96	MQRankSum	T|downstream_gene_variant|MODIFIER|CTD-2588J6.1|ENSG00000260161|Transcript|ENST00000566728|processed_pseudogene|||||||||||1533|-1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+20484C>A|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.170261	0.200132	303	265	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			73,.,44	0.547945,.,0.5	
-aff_only	fam_pl	IP00FNW	chr16:82152710:G:T	1,.,.	7	0.318	22	-1.398	DB	501	9.0714	9.547	-0.4667	7	0.318	60	0	14.06	0.595	0.405	23.96	MQRankSum	T|downstream_gene_variant|MODIFIER|CTD-2588J6.1|ENSG00000260161|Transcript|ENST00000566728|processed_pseudogene|||||||||||1533|-1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+20484C>A|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.170261	0.200132	303	265	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			56,.,.	0.517857,.,.	
-aff_only	fam_pl	IP00FNY	chr16:82152710:G:T	1,.,.	7	0.318	22	-1.398	DB	501	9.0714	9.547	-0.4667	7	0.318	60	0	14.06	0.595	0.405	23.96	MQRankSum	T|downstream_gene_variant|MODIFIER|CTD-2588J6.1|ENSG00000260161|Transcript|ENST00000566728|processed_pseudogene|||||||||||1533|-1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+20484C>A|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.170261	0.200132	303	265	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			54,.,.	0.425926,.,.	
-aff_only	fam_pl	C0011JZ	chr16:82161091:TA:T	1,.,.	7	0.318	22	0	DB	477	9.0714	8.803	-0.4667	7	0.318	60	0	14.51	-0.067	0.888	9.41	MQRankSum	-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+12102del|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.22923	0.284585	309	271	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			32,.,.	0.5625,.,.	
-aff_only	fam_pl	C0011K2	chr16:82161091:TA:T	1,.,.	7	0.318	22	0	DB	477	9.0714	8.803	-0.4667	7	0.318	60	0	14.51	-0.067	0.888	9.41	MQRankSum	-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+12102del|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.22923	0.284585	309	271	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,.	0.478261,.,.	
-aff_only	fam_pl	C0011K3	chr16:82161091:TA:T	1,.,.	7	0.318	22	0	DB	477	9.0714	8.803	-0.4667	7	0.318	60	0	14.51	-0.067	0.888	9.41	MQRankSum	-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+12102del|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.22923	0.284585	309	271	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			52,.,.	0.403846,.,.	
-aff_only	fam_pl	C0011KA	chr16:82161091:TA:T	1,.,1	7	0.318	22	0	DB	477	9.0714	8.803	-0.4667	7	0.318	60	0	14.51	-0.067	0.888	9.41	MQRankSum	-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+12102del|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.22923	0.284585	309	271	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,46	0.384615,.,0.478261	
-aff_only	fam_pl	IP00FNP	chr16:82161091:TA:T	1,.,1	7	0.318	22	0	DB	477	9.0714	8.803	-0.4667	7	0.318	60	0	14.51	-0.067	0.888	9.41	MQRankSum	-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+12102del|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.22923	0.284585	309	271	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,32	0.446809,.,0.5625	
-aff_only	fam_pl	IP00FNW	chr16:82161091:TA:T	1,.,.	7	0.318	22	0	DB	477	9.0714	8.803	-0.4667	7	0.318	60	0	14.51	-0.067	0.888	9.41	MQRankSum	-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+12102del|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.22923	0.284585	309	271	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			64,.,.	0.484375,.,.	
-aff_only	fam_pl	IP00FNY	chr16:82161091:TA:T	1,.,.	7	0.318	22	0	DB	477	9.0714	8.803	-0.4667	7	0.318	60	0	14.51	-0.067	0.888	9.41	MQRankSum	-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+12102del|||||||||-1||Clone_based_vega_gene||YES||||	-1	0.22923	0.284585	309	271	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			69,.,.	0.42029,.,.	
-aff_only	fam_pl	C0011JZ	chr16:82294753:A:G	1,.,.	7	0.318	22	-1.442	DB	455	9.0714	7.721	-0.4667	7	0.318	60	0	12.15	0.508	0.425	23.56	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0416353	0.0542824	25	22	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			27,.,.	0.481481,.,.	
-aff_only	fam_pl	C0011K2	chr16:82294753:A:G	1,.,.	7	0.318	22	-1.442	DB	455	9.0714	7.721	-0.4667	7	0.318	60	0	12.15	0.508	0.425	23.56	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0416353	0.0542824	25	22	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.585366,.,.	
-aff_only	fam_pl	C0011K3	chr16:82294753:A:G	1,.,.	7	0.318	22	-1.442	DB	455	9.0714	7.721	-0.4667	7	0.318	60	0	12.15	0.508	0.425	23.56	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0416353	0.0542824	25	22	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.52381,.,.	
-aff_only	fam_pl	C0011KA	chr16:82294753:A:G	1,.,1	7	0.318	22	-1.442	DB	455	9.0714	7.721	-0.4667	7	0.318	60	0	12.15	0.508	0.425	23.56	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0416353	0.0542824	25	22	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,41	0.611111,.,0.585366	
-aff_only	fam_pl	IP00FNP	chr16:82294753:A:G	1,.,1	7	0.318	22	-1.442	DB	455	9.0714	7.721	-0.4667	7	0.318	60	0	12.15	0.508	0.425	23.56	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0416353	0.0542824	25	22	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,27	0.4,.,0.481481	
-aff_only	fam_pl	IP00FNW	chr16:82294753:A:G	1,.,.	7	0.318	22	-1.442	DB	455	9.0714	7.721	-0.4667	7	0.318	60	0	12.15	0.508	0.425	23.56	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0416353	0.0542824	25	22	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			53,.,.	0.490566,.,.	
-aff_only	fam_pl	IP00FNY	chr16:82294753:A:G	1,.,.	7	0.318	22	-1.442	DB	455	9.0714	7.721	-0.4667	7	0.318	60	0	12.15	0.508	0.425	23.56	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0416353	0.0542824	25	22	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			61,.,.	0.393443,.,.	
-aff_only	fam_pl	C0011JZ	chr19:52133734:G:A	1,.,.	7	0.318	22	0.996	DB	358	9.0714	22.608	-0.4667	7	0.318	48.84	1.86	10.89	0.438	1.647	-5.591	MQ	A|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-845C>T|||||||||-1||HGNC|10874|||||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-265C>T|||||||||-1||Uniprot_gn|10874|YES||||,A|5_prime_UTR_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding|2/10||ENST00000534261.2:c.-146C>T||255/2356|||||||-1||HGNC|10874||CCDS33088.1|||,A|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||146|-1||HGNC|10874|YES|CCDS33088.1|||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-845C>T|||||||||-1||Uniprot_gn|10874|||||	-1	0.298587	0.278243	828	446	35	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.394737,.,.	
-aff_only	fam_pl	C0011K2	chr19:52133734:G:A	1,.,.	7	0.318	22	0.996	DB	358	9.0714	22.608	-0.4667	7	0.318	48.84	1.86	10.89	0.438	1.647	-5.591	MQ	A|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-845C>T|||||||||-1||HGNC|10874|||||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-265C>T|||||||||-1||Uniprot_gn|10874|YES||||,A|5_prime_UTR_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding|2/10||ENST00000534261.2:c.-146C>T||255/2356|||||||-1||HGNC|10874||CCDS33088.1|||,A|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||146|-1||HGNC|10874|YES|CCDS33088.1|||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-845C>T|||||||||-1||Uniprot_gn|10874|||||	-1	0.298587	0.278243	828	446	35	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.535714,.,.	
-aff_only	fam_pl	C0011K3	chr19:52133734:G:A	1,.,.	7	0.318	22	0.996	DB	358	9.0714	22.608	-0.4667	7	0.318	48.84	1.86	10.89	0.438	1.647	-5.591	MQ	A|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-845C>T|||||||||-1||HGNC|10874|||||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-265C>T|||||||||-1||Uniprot_gn|10874|YES||||,A|5_prime_UTR_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding|2/10||ENST00000534261.2:c.-146C>T||255/2356|||||||-1||HGNC|10874||CCDS33088.1|||,A|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||146|-1||HGNC|10874|YES|CCDS33088.1|||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-845C>T|||||||||-1||Uniprot_gn|10874|||||	-1	0.298587	0.278243	828	446	35	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.358974,.,.	
-aff_only	fam_pl	C0011KA	chr19:52133734:G:A	1,.,1	7	0.318	22	0.996	DB	358	9.0714	22.608	-0.4667	7	0.318	48.84	1.86	10.89	0.438	1.647	-5.591	MQ	A|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-845C>T|||||||||-1||HGNC|10874|||||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-265C>T|||||||||-1||Uniprot_gn|10874|YES||||,A|5_prime_UTR_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding|2/10||ENST00000534261.2:c.-146C>T||255/2356|||||||-1||HGNC|10874||CCDS33088.1|||,A|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||146|-1||HGNC|10874|YES|CCDS33088.1|||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-845C>T|||||||||-1||Uniprot_gn|10874|||||	-1	0.298587	0.278243	828	446	35	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,28	0.405405,.,0.535714	
-aff_only	fam_pl	IP00FNP	chr19:52133734:G:A	1,.,1	7	0.318	22	0.996	DB	358	9.0714	22.608	-0.4667	7	0.318	48.84	1.86	10.89	0.438	1.647	-5.591	MQ	A|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-845C>T|||||||||-1||HGNC|10874|||||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-265C>T|||||||||-1||Uniprot_gn|10874|YES||||,A|5_prime_UTR_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding|2/10||ENST00000534261.2:c.-146C>T||255/2356|||||||-1||HGNC|10874||CCDS33088.1|||,A|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||146|-1||HGNC|10874|YES|CCDS33088.1|||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-845C>T|||||||||-1||Uniprot_gn|10874|||||	-1	0.298587	0.278243	828	446	35	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,38	0.285714,.,0.394737	
-aff_only	fam_pl	IP00FNW	chr19:52133734:G:A	1,.,.	7	0.318	22	0.996	DB	358	9.0714	22.608	-0.4667	7	0.318	48.84	1.86	10.89	0.438	1.647	-5.591	MQ	A|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-845C>T|||||||||-1||HGNC|10874|||||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-265C>T|||||||||-1||Uniprot_gn|10874|YES||||,A|5_prime_UTR_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding|2/10||ENST00000534261.2:c.-146C>T||255/2356|||||||-1||HGNC|10874||CCDS33088.1|||,A|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||146|-1||HGNC|10874|YES|CCDS33088.1|||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-845C>T|||||||||-1||Uniprot_gn|10874|||||	-1	0.298587	0.278243	828	446	35	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.5,.,.	
-aff_only	fam_pl	IP00FNY	chr19:52133734:G:A	1,.,.	7	0.318	22	0.996	DB	358	9.0714	22.608	-0.4667	7	0.318	48.84	1.86	10.89	0.438	1.647	-5.591	MQ	A|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-845C>T|||||||||-1||HGNC|10874|||||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-265C>T|||||||||-1||Uniprot_gn|10874|YES||||,A|5_prime_UTR_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding|2/10||ENST00000534261.2:c.-146C>T||255/2356|||||||-1||HGNC|10874||CCDS33088.1|||,A|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||146|-1||HGNC|10874|YES|CCDS33088.1|||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-845C>T|||||||||-1||Uniprot_gn|10874|||||	-1	0.298587	0.278243	828	446	35	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.4,.,.	
-aff_only	fam_pl	C0011JZ	chr19:52134334:TA:T	1,.,.	7	0.318	22	-0.496		346	9.0714	9.467	-0.5172	7	0.318	59.87	0	9.91	-0.266	0.35	5.73	MQRankSum	-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-1446del|||||||||-1||HGNC|10874|||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-866del|||||||||-1||Uniprot_gn|10874|YES||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-416del|||||||||-1||HGNC|10874||CCDS33088.1|||,-|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||747|-1||HGNC|10874|YES|CCDS33088.1|||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-1446del|||||||||-1||Uniprot_gn|10874|||||	-1	0.300644	0.330881	704	588	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			19,.,.	0.736842,.,.	
-aff_only	fam_pl	C0011K2	chr19:52134334:TA:T	1,.,.	7	0.318	22	-0.496		346	9.0714	9.467	-0.5172	7	0.318	59.87	0	9.91	-0.266	0.35	5.73	MQRankSum	-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-1446del|||||||||-1||HGNC|10874|||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-866del|||||||||-1||Uniprot_gn|10874|YES||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-416del|||||||||-1||HGNC|10874||CCDS33088.1|||,-|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||747|-1||HGNC|10874|YES|CCDS33088.1|||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-1446del|||||||||-1||Uniprot_gn|10874|||||	-1	0.300644	0.330881	704	588	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.535714,.,.	
-aff_only	fam_pl	C0011K3	chr19:52134334:TA:T	1,.,.	7	0.318	22	-0.496		346	9.0714	9.467	-0.5172	7	0.318	59.87	0	9.91	-0.266	0.35	5.73	MQRankSum	-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-1446del|||||||||-1||HGNC|10874|||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-866del|||||||||-1||Uniprot_gn|10874|YES||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-416del|||||||||-1||HGNC|10874||CCDS33088.1|||,-|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||747|-1||HGNC|10874|YES|CCDS33088.1|||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-1446del|||||||||-1||Uniprot_gn|10874|||||	-1	0.300644	0.330881	704	588	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			24,.,.	0.583333,.,.	
-aff_only	fam_pl	C0011KA	chr19:52134334:TA:T	1,.,1	7	0.318	22	-0.496		346	9.0714	9.467	-0.5172	7	0.318	59.87	0	9.91	-0.266	0.35	5.73	MQRankSum	-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-1446del|||||||||-1||HGNC|10874|||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-866del|||||||||-1||Uniprot_gn|10874|YES||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-416del|||||||||-1||HGNC|10874||CCDS33088.1|||,-|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||747|-1||HGNC|10874|YES|CCDS33088.1|||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-1446del|||||||||-1||Uniprot_gn|10874|||||	-1	0.300644	0.330881	704	588	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			16,.,28	0.5625,.,0.535714	
-aff_only	fam_pl	IP00FNP	chr19:52134334:TA:T	1,.,1	7	0.318	22	-0.496		346	9.0714	9.467	-0.5172	7	0.318	59.87	0	9.91	-0.266	0.35	5.73	MQRankSum	-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-1446del|||||||||-1||HGNC|10874|||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-866del|||||||||-1||Uniprot_gn|10874|YES||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-416del|||||||||-1||HGNC|10874||CCDS33088.1|||,-|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||747|-1||HGNC|10874|YES|CCDS33088.1|||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-1446del|||||||||-1||Uniprot_gn|10874|||||	-1	0.300644	0.330881	704	588	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,19	0.464286,.,0.736842	
-aff_only	fam_pl	IP00FNW	chr19:52134334:TA:T	1,.,.	7	0.318	22	-0.496		346	9.0714	9.467	-0.5172	7	0.318	59.87	0	9.91	-0.266	0.35	5.73	MQRankSum	-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-1446del|||||||||-1||HGNC|10874|||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-866del|||||||||-1||Uniprot_gn|10874|YES||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-416del|||||||||-1||HGNC|10874||CCDS33088.1|||,-|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||747|-1||HGNC|10874|YES|CCDS33088.1|||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-1446del|||||||||-1||Uniprot_gn|10874|||||	-1	0.300644	0.330881	704	588	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,.	0.44,.,.	
-aff_only	fam_pl	IP00FNY	chr19:52134334:TA:T	1,.,.	7	0.318	22	-0.496		346	9.0714	9.467	-0.5172	7	0.318	59.87	0	9.91	-0.266	0.35	5.73	MQRankSum	-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-1446del|||||||||-1||HGNC|10874|||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-866del|||||||||-1||Uniprot_gn|10874|YES||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-416del|||||||||-1||HGNC|10874||CCDS33088.1|||,-|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||747|-1||HGNC|10874|YES|CCDS33088.1|||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-1446del|||||||||-1||Uniprot_gn|10874|||||	-1	0.300644	0.330881	704	588	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			18,.,.	0.722222,.,.	
-aff_only	fam_pl	C0011JZ	chr19:52135776:G:T	1,.,.	7	0.318	22	1.69	DB	418	9.0714	6.217	-0.4667	7	0.318	60	0	14.94	0.448	0.453	23.53	MQRankSum	T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-2887C>A|||||||||-1||HGNC|10874|||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-2307C>A|||||||||-1||Uniprot_gn|10874|YES||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-1857C>A|||||||||-1||HGNC|10874||CCDS33088.1|||,T|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||2188|-1||HGNC|10874|YES|CCDS33088.1|||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-2887C>A|||||||||-1||Uniprot_gn|10874|||||	-1	0.291102	0.327437	1319	1031	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,.	0.37931,.,.	
-aff_only	fam_pl	C0011K2	chr19:52135776:G:T	1,.,.	7	0.318	22	1.69	DB	418	9.0714	6.217	-0.4667	7	0.318	60	0	14.94	0.448	0.453	23.53	MQRankSum	T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-2887C>A|||||||||-1||HGNC|10874|||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-2307C>A|||||||||-1||Uniprot_gn|10874|YES||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-1857C>A|||||||||-1||HGNC|10874||CCDS33088.1|||,T|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||2188|-1||HGNC|10874|YES|CCDS33088.1|||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-2887C>A|||||||||-1||Uniprot_gn|10874|||||	-1	0.291102	0.327437	1319	1031	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.422222,.,.	
-aff_only	fam_pl	C0011K3	chr19:52135776:G:T	1,.,.	7	0.318	22	1.69	DB	418	9.0714	6.217	-0.4667	7	0.318	60	0	14.94	0.448	0.453	23.53	MQRankSum	T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-2887C>A|||||||||-1||HGNC|10874|||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-2307C>A|||||||||-1||Uniprot_gn|10874|YES||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-1857C>A|||||||||-1||HGNC|10874||CCDS33088.1|||,T|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||2188|-1||HGNC|10874|YES|CCDS33088.1|||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-2887C>A|||||||||-1||Uniprot_gn|10874|||||	-1	0.291102	0.327437	1319	1031	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.578947,.,.	
-aff_only	fam_pl	C0011KA	chr19:52135776:G:T	1,.,1	7	0.318	22	1.69	DB	418	9.0714	6.217	-0.4667	7	0.318	60	0	14.94	0.448	0.453	23.53	MQRankSum	T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-2887C>A|||||||||-1||HGNC|10874|||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-2307C>A|||||||||-1||Uniprot_gn|10874|YES||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-1857C>A|||||||||-1||HGNC|10874||CCDS33088.1|||,T|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||2188|-1||HGNC|10874|YES|CCDS33088.1|||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-2887C>A|||||||||-1||Uniprot_gn|10874|||||	-1	0.291102	0.327437	1319	1031	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,45	0.62069,.,0.422222	
-aff_only	fam_pl	IP00FNP	chr19:52135776:G:T	1,.,1	7	0.318	22	1.69	DB	418	9.0714	6.217	-0.4667	7	0.318	60	0	14.94	0.448	0.453	23.53	MQRankSum	T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-2887C>A|||||||||-1||HGNC|10874|||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-2307C>A|||||||||-1||Uniprot_gn|10874|YES||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-1857C>A|||||||||-1||HGNC|10874||CCDS33088.1|||,T|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||2188|-1||HGNC|10874|YES|CCDS33088.1|||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-2887C>A|||||||||-1||Uniprot_gn|10874|||||	-1	0.291102	0.327437	1319	1031	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			49,.,29	0.673469,.,0.37931	
-aff_only	fam_pl	IP00FNW	chr19:52135776:G:T	1,.,.	7	0.318	22	1.69	DB	418	9.0714	6.217	-0.4667	7	0.318	60	0	14.94	0.448	0.453	23.53	MQRankSum	T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-2887C>A|||||||||-1||HGNC|10874|||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-2307C>A|||||||||-1||Uniprot_gn|10874|YES||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-1857C>A|||||||||-1||HGNC|10874||CCDS33088.1|||,T|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||2188|-1||HGNC|10874|YES|CCDS33088.1|||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-2887C>A|||||||||-1||Uniprot_gn|10874|||||	-1	0.291102	0.327437	1319	1031	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.538462,.,.	
-aff_only	fam_pl	IP00FNY	chr19:52135776:G:T	1,.,.	7	0.318	22	1.69	DB	418	9.0714	6.217	-0.4667	7	0.318	60	0	14.94	0.448	0.453	23.53	MQRankSum	T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-2887C>A|||||||||-1||HGNC|10874|||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-2307C>A|||||||||-1||Uniprot_gn|10874|YES||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-1857C>A|||||||||-1||HGNC|10874||CCDS33088.1|||,T|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||2188|-1||HGNC|10874|YES|CCDS33088.1|||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-2887C>A|||||||||-1||Uniprot_gn|10874|||||	-1	0.291102	0.327437	1319	1031	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			61,.,.	0.491803,.,.	
-aff_only	fam_pl	C0011JZ	chr19:52250589:G:A	1,.,.	7	0.318	22	1.35	DB	445	9.0714	0.884	-0.4667	7	0.318	59.98	0	13.19	0.264	0.751	8.56	MQRankSum	A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-331C>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-331C>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4690|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.248148	0.229188	668	367	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,.	0.655172,.,.	
-aff_only	fam_pl	C0011K2	chr19:52250589:G:A	1,.,.	7	0.318	22	1.35	DB	445	9.0714	0.884	-0.4667	7	0.318	59.98	0	13.19	0.264	0.751	8.56	MQRankSum	A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-331C>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-331C>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4690|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.248148	0.229188	668	367	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.511628,.,.	
-aff_only	fam_pl	C0011K3	chr19:52250589:G:A	1,.,.	7	0.318	22	1.35	DB	445	9.0714	0.884	-0.4667	7	0.318	59.98	0	13.19	0.264	0.751	8.56	MQRankSum	A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-331C>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-331C>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4690|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.248148	0.229188	668	367	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.295455,.,.	
-aff_only	fam_pl	C0011KA	chr19:52250589:G:A	1,.,1	7	0.318	22	1.35	DB	445	9.0714	0.884	-0.4667	7	0.318	59.98	0	13.19	0.264	0.751	8.56	MQRankSum	A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-331C>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-331C>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4690|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.248148	0.229188	668	367	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			23,.,43	0.434783,.,0.511628	
-aff_only	fam_pl	IP00FNP	chr19:52250589:G:A	1,.,1	7	0.318	22	1.35	DB	445	9.0714	0.884	-0.4667	7	0.318	59.98	0	13.19	0.264	0.751	8.56	MQRankSum	A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-331C>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-331C>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4690|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.248148	0.229188	668	367	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,29	0.428571,.,0.655172	
-aff_only	fam_pl	IP00FNW	chr19:52250589:G:A	1,.,.	7	0.318	22	1.35	DB	445	9.0714	0.884	-0.4667	7	0.318	59.98	0	13.19	0.264	0.751	8.56	MQRankSum	A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-331C>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-331C>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4690|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.248148	0.229188	668	367	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.577778,.,.	
-aff_only	fam_pl	IP00FNY	chr19:52250589:G:A	1,.,.	7	0.318	22	1.35	DB	445	9.0714	0.884	-0.4667	7	0.318	59.98	0	13.19	0.264	0.751	8.56	MQRankSum	A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-331C>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-331C>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4690|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.248148	0.229188	668	367	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			66,.,.	0.484848,.,.	
-aff_only	fam_pl	C0011JZ	chr19:52250888:G:GATTCATGAATAC	1,.,.	7	0.318	22	-0.199	DB	466	9.0714	0.416	-0.4667	7	0.318	60	0	23.13	-0.59	0.74	8.83	MQRankSum	ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826||CCDS12839.1|||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,ATTCATGAATAC|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4390|1|cds_end_NF|HGNC|3827|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.242757	0.225191	577	313	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,.	0.517241,.,.	
-aff_only	fam_pl	C0011K2	chr19:52250888:G:GATTCATGAATAC	1,.,.	7	0.318	22	-0.199	DB	466	9.0714	0.416	-0.4667	7	0.318	60	0	23.13	-0.59	0.74	8.83	MQRankSum	ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826||CCDS12839.1|||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,ATTCATGAATAC|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4390|1|cds_end_NF|HGNC|3827|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.242757	0.225191	577	313	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.536585,.,.	
-aff_only	fam_pl	C0011K3	chr19:52250888:G:GATTCATGAATAC	1,.,.	7	0.318	22	-0.199	DB	466	9.0714	0.416	-0.4667	7	0.318	60	0	23.13	-0.59	0.74	8.83	MQRankSum	ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826||CCDS12839.1|||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,ATTCATGAATAC|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4390|1|cds_end_NF|HGNC|3827|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.242757	0.225191	577	313	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.384615,.,.	
-aff_only	fam_pl	C0011KA	chr19:52250888:G:GATTCATGAATAC	1,.,1	7	0.318	22	-0.199	DB	466	9.0714	0.416	-0.4667	7	0.318	60	0	23.13	-0.59	0.74	8.83	MQRankSum	ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826||CCDS12839.1|||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,ATTCATGAATAC|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4390|1|cds_end_NF|HGNC|3827|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.242757	0.225191	577	313	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,41	0.588235,.,0.536585	
-aff_only	fam_pl	IP00FNP	chr19:52250888:G:GATTCATGAATAC	1,.,1	7	0.318	22	-0.199	DB	466	9.0714	0.416	-0.4667	7	0.318	60	0	23.13	-0.59	0.74	8.83	MQRankSum	ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826||CCDS12839.1|||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,ATTCATGAATAC|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4390|1|cds_end_NF|HGNC|3827|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.242757	0.225191	577	313	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			53,.,29	0.679245,.,0.517241	
-aff_only	fam_pl	IP00FNW	chr19:52250888:G:GATTCATGAATAC	1,.,.	7	0.318	22	-0.199	DB	466	9.0714	0.416	-0.4667	7	0.318	60	0	23.13	-0.59	0.74	8.83	MQRankSum	ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826||CCDS12839.1|||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,ATTCATGAATAC|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4390|1|cds_end_NF|HGNC|3827|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.242757	0.225191	577	313	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,.	0.543478,.,.	
-aff_only	fam_pl	IP00FNY	chr19:52250888:G:GATTCATGAATAC	1,.,.	7	0.318	22	-0.199	DB	466	9.0714	0.416	-0.4667	7	0.318	60	0	23.13	-0.59	0.74	8.83	MQRankSum	ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826||CCDS12839.1|||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,ATTCATGAATAC|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4390|1|cds_end_NF|HGNC|3827|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.242757	0.225191	577	313	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			64,.,.	0.5,.,.	
-aff_only	fam_pl	C0011JZ	chr19:52250892:T:A	1,.,.	7	0.318	22	0	DB	471	9.0714	0.848	-0.4667	7	0.318	60.03	0	20.67	-0.977	0.628	6.95	MQRankSum	A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-634A>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-634A>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4387|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.243128	0.225295	578	313	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,.	0.533333,.,.	
-aff_only	fam_pl	C0011K2	chr19:52250892:T:A	1,.,.	7	0.318	22	0	DB	471	9.0714	0.848	-0.4667	7	0.318	60.03	0	20.67	-0.977	0.628	6.95	MQRankSum	A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-634A>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-634A>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4387|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.243128	0.225295	578	313	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.511111,.,.	
-aff_only	fam_pl	C0011K3	chr19:52250892:T:A	1,.,.	7	0.318	22	0	DB	471	9.0714	0.848	-0.4667	7	0.318	60.03	0	20.67	-0.977	0.628	6.95	MQRankSum	A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-634A>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-634A>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4387|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.243128	0.225295	578	313	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.404762,.,.	
-aff_only	fam_pl	C0011KA	chr19:52250892:T:A	1,.,1	7	0.318	22	0	DB	471	9.0714	0.848	-0.4667	7	0.318	60.03	0	20.67	-0.977	0.628	6.95	MQRankSum	A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-634A>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-634A>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4387|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.243128	0.225295	578	313	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,45	0.588235,.,0.511111	
-aff_only	fam_pl	IP00FNP	chr19:52250892:T:A	1,.,1	7	0.318	22	0	DB	471	9.0714	0.848	-0.4667	7	0.318	60.03	0	20.67	-0.977	0.628	6.95	MQRankSum	A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-634A>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-634A>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4387|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.243128	0.225295	578	313	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			54,.,30	0.62963,.,0.533333	
-aff_only	fam_pl	IP00FNW	chr19:52250892:T:A	1,.,.	7	0.318	22	0	DB	471	9.0714	0.848	-0.4667	7	0.318	60.03	0	20.67	-0.977	0.628	6.95	MQRankSum	A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-634A>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-634A>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4387|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.243128	0.225295	578	313	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.5,.,.	
-aff_only	fam_pl	IP00FNY	chr19:52250892:T:A	1,.,.	7	0.318	22	0	DB	471	9.0714	0.848	-0.4667	7	0.318	60.03	0	20.67	-0.977	0.628	6.95	MQRankSum	A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-634A>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-634A>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4387|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||	-1	0.243128	0.225295	578	313	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			70,.,.	0.528571,.,.	
-aff_only	fam_pl	C0011JZ	chr19:53546001:C:CT	1,.,.	7	0.318	22	0	DB	461	9.3779	11.346	-0.4667	7	0.318	60.05	0	10.25	-0.105	0.731	6.98	MQRankSum	T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000594516|processed_transcript|||||||||||4865|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000600425|processed_transcript|||||||||||4850|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ERVV-2|ENSG00000268964|Transcript|ENST00000601417|protein_coding|||||||||||1989|1||HGNC|39051|YES|CCDS59420.1|||	-1	0.34934	0.373508	859	628	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,.	0.411765,.,.	
-aff_only	fam_pl	C0011K2	chr19:53546001:C:CT	1,.,.	7	0.318	22	0	DB	461	9.3779	11.346	-0.4667	7	0.318	60.05	0	10.25	-0.105	0.731	6.98	MQRankSum	T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000594516|processed_transcript|||||||||||4865|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000600425|processed_transcript|||||||||||4850|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ERVV-2|ENSG00000268964|Transcript|ENST00000601417|protein_coding|||||||||||1989|1||HGNC|39051|YES|CCDS59420.1|||	-1	0.34934	0.373508	859	628	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			19,.,.	0.631579,.,.	
-aff_only	fam_pl	C0011K3	chr19:53546001:C:CT	1,.,.	7	0.318	22	0	DB	461	9.3779	11.346	-0.4667	7	0.318	60.05	0	10.25	-0.105	0.731	6.98	MQRankSum	T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000594516|processed_transcript|||||||||||4865|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000600425|processed_transcript|||||||||||4850|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ERVV-2|ENSG00000268964|Transcript|ENST00000601417|protein_coding|||||||||||1989|1||HGNC|39051|YES|CCDS59420.1|||	-1	0.34934	0.373508	859	628	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.333333,.,.	
-aff_only	fam_pl	C0011KA	chr19:53546001:C:CT	1,.,1	7	0.318	22	0	DB	461	9.3779	11.346	-0.4667	7	0.318	60.05	0	10.25	-0.105	0.731	6.98	MQRankSum	T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000594516|processed_transcript|||||||||||4865|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000600425|processed_transcript|||||||||||4850|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ERVV-2|ENSG00000268964|Transcript|ENST00000601417|protein_coding|||||||||||1989|1||HGNC|39051|YES|CCDS59420.1|||	-1	0.34934	0.373508	859	628	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,19	0.232558,.,0.631579	
-aff_only	fam_pl	IP00FNP	chr19:53546001:C:CT	1,.,1	7	0.318	22	0	DB	461	9.3779	11.346	-0.4667	7	0.318	60.05	0	10.25	-0.105	0.731	6.98	MQRankSum	T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000594516|processed_transcript|||||||||||4865|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000600425|processed_transcript|||||||||||4850|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ERVV-2|ENSG00000268964|Transcript|ENST00000601417|protein_coding|||||||||||1989|1||HGNC|39051|YES|CCDS59420.1|||	-1	0.34934	0.373508	859	628	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,34	0.216216,.,0.411765	
-aff_only	fam_pl	IP00FNW	chr19:53546001:C:CT	1,.,.	7	0.318	22	0	DB	461	9.3779	11.346	-0.4667	7	0.318	60.05	0	10.25	-0.105	0.731	6.98	MQRankSum	T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000594516|processed_transcript|||||||||||4865|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000600425|processed_transcript|||||||||||4850|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ERVV-2|ENSG00000268964|Transcript|ENST00000601417|protein_coding|||||||||||1989|1||HGNC|39051|YES|CCDS59420.1|||	-1	0.34934	0.373508	859	628	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.571429,.,.	
-aff_only	fam_pl	IP00FNY	chr19:53546001:C:CT	1,.,.	7	0.318	22	0	DB	461	9.3779	11.346	-0.4667	7	0.318	60.05	0	10.25	-0.105	0.731	6.98	MQRankSum	T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000594516|processed_transcript|||||||||||4865|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000600425|processed_transcript|||||||||||4850|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ERVV-2|ENSG00000268964|Transcript|ENST00000601417|protein_coding|||||||||||1989|1||HGNC|39051|YES|CCDS59420.1|||	-1	0.34934	0.373508	859	628	51	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			9,.,.	0.888889,.,.	
-aff_only	fam_pl	C0011JZ	chr20:25742657:TA:T	1,.,.	7	0.318	22	0.872	DB	554	9.0714	9.573	-0.4985	7	0.318	56.51	-6.102	4.1	1.54	1.37	-2.626	MQ	-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1444|-1||HGNC|34503|||||,-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1444|-1||HGNC|34503|||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.0769231,.,.	
-aff_only	fam_pl	C0011K2	chr20:25742657:TA:T	1,.,.	7	0.318	22	0.872	DB	554	9.0714	9.573	-0.4985	7	0.318	56.51	-6.102	4.1	1.54	1.37	-2.626	MQ	-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1444|-1||HGNC|34503|||||,-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1444|-1||HGNC|34503|||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.179487,.,.	
-aff_only	fam_pl	C0011K3	chr20:25742657:TA:T	1,.,.	7	0.318	22	0.872	DB	554	9.0714	9.573	-0.4985	7	0.318	56.51	-6.102	4.1	1.54	1.37	-2.626	MQ	-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1444|-1||HGNC|34503|||||,-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1444|-1||HGNC|34503|||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			37,.,.	0.135135,.,.	
-aff_only	fam_pl	C0011KA	chr20:25742657:TA:T	1,.,1	7	0.318	22	0.872	DB	554	9.0714	9.573	-0.4985	7	0.318	56.51	-6.102	4.1	1.54	1.37	-2.626	MQ	-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1444|-1||HGNC|34503|||||,-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1444|-1||HGNC|34503|||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,39	0.138889,.,0.179487	
-aff_only	fam_pl	IP00FNP	chr20:25742657:TA:T	1,.,1	7	0.318	22	0.872	DB	554	9.0714	9.573	-0.4985	7	0.318	56.51	-6.102	4.1	1.54	1.37	-2.626	MQ	-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1444|-1||HGNC|34503|||||,-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1444|-1||HGNC|34503|||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			77,.,39	0.181818,.,0.0769231	
-aff_only	fam_pl	IP00FNW	chr20:25742657:TA:T	1,.,.	7	0.318	22	0.872	DB	554	9.0714	9.573	-0.4985	7	0.318	56.51	-6.102	4.1	1.54	1.37	-2.626	MQ	-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1444|-1||HGNC|34503|||||,-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1444|-1||HGNC|34503|||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			64,.,.	0.15625,.,.	
-aff_only	fam_pl	IP00FNY	chr20:25742657:TA:T	1,.,.	7	0.318	22	0.872	DB	554	9.0714	9.573	-0.4985	7	0.318	56.51	-6.102	4.1	1.54	1.37	-2.626	MQ	-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1444|-1||HGNC|34503|||||,-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1444|-1||HGNC|34503|||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			78,.,.	0.192308,.,.	
-aff_only	fam_pl	C0011JZ	chr20:25742669:G:A	1,.,.	7	0.318	22	0.104	DB	548	9.0714	14.421	-0.5141	7	0.318	56.4	-6.102	4.03	0.242	1.367	-2.682	MQ	A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1433|-1||HGNC|34503|||||,A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1433|-1||HGNC|34503|||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.0769231,.,.	
-aff_only	fam_pl	C0011K2	chr20:25742669:G:A	1,.,.	7	0.318	22	0.104	DB	548	9.0714	14.421	-0.5141	7	0.318	56.4	-6.102	4.03	0.242	1.367	-2.682	MQ	A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1433|-1||HGNC|34503|||||,A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1433|-1||HGNC|34503|||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.195122,.,.	
-aff_only	fam_pl	C0011K3	chr20:25742669:G:A	1,.,.	7	0.318	22	0.104	DB	548	9.0714	14.421	-0.5141	7	0.318	56.4	-6.102	4.03	0.242	1.367	-2.682	MQ	A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1433|-1||HGNC|34503|||||,A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1433|-1||HGNC|34503|||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.166667,.,.	
-aff_only	fam_pl	C0011KA	chr20:25742669:G:A	1,.,1	7	0.318	22	0.104	DB	548	9.0714	14.421	-0.5141	7	0.318	56.4	-6.102	4.03	0.242	1.367	-2.682	MQ	A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1433|-1||HGNC|34503|||||,A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1433|-1||HGNC|34503|||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,41	0.147059,.,0.195122	
-aff_only	fam_pl	IP00FNP	chr20:25742669:G:A	1,.,1	7	0.318	22	0.104	DB	548	9.0714	14.421	-0.5141	7	0.318	56.4	-6.102	4.03	0.242	1.367	-2.682	MQ	A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1433|-1||HGNC|34503|||||,A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1433|-1||HGNC|34503|||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			74,.,39	0.175676,.,0.0769231	
-aff_only	fam_pl	IP00FNW	chr20:25742669:G:A	1,.,.	7	0.318	22	0.104	DB	548	9.0714	14.421	-0.5141	7	0.318	56.4	-6.102	4.03	0.242	1.367	-2.682	MQ	A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1433|-1||HGNC|34503|||||,A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1433|-1||HGNC|34503|||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			63,.,.	0.142857,.,.	
-aff_only	fam_pl	IP00FNY	chr20:25742669:G:A	1,.,.	7	0.318	22	0.104	DB	548	9.0714	14.421	-0.5141	7	0.318	56.4	-6.102	4.03	0.242	1.367	-2.682	MQ	A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1433|-1||HGNC|34503|||||,A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1433|-1||HGNC|34503|||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			71,.,.	0.197183,.,.	
-aff_only	fam_pl	C0011JZ	chr20:52482965:ATT:A	1,.,.	7	0.318	22	0.89	DB	405	0.5742	0	0.3714	7	0.318	60	0	15.88	0.366	0.707	8.98	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	-1	-1	-1	-1	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			14,.,.	0.642857,.,.	
-aff_only	fam_pl	C0011K2	chr20:52482965:ATT:A	1,.,.	7	0.318	22	0.89	DB	405	0.5742	0	0.3714	7	0.318	60	0	15.88	0.366	0.707	8.98	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	-1	-1	-1	-1	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			14,.,.	0.571429,.,.	
-aff_only	fam_pl	C0011K3	chr20:52482965:ATT:A	1,.,.	7	0.318	22	0.89	DB	405	0.5742	0	0.3714	7	0.318	60	0	15.88	0.366	0.707	8.98	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	-1	-1	-1	-1	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,.	0.4,.,.	
-aff_only	fam_pl	C0011KA	chr20:52482965:ATT:A	1,.,1	7	0.318	22	0.89	DB	405	0.5742	0	0.3714	7	0.318	60	0	15.88	0.366	0.707	8.98	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	-1	-1	-1	-1	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			16,.,14	0.5625,.,0.571429	
-aff_only	fam_pl	IP00FNP	chr20:52482965:ATT:A	1,.,1	7	0.318	22	0.89	DB	405	0.5742	0	0.3714	7	0.318	60	0	15.88	0.366	0.707	8.98	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	-1	-1	-1	-1	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			15,.,14	0.933333,.,0.642857	
-aff_only	fam_pl	IP00FNW	chr20:52482965:ATT:A	1,.,.	7	0.318	22	0.89	DB	405	0.5742	0	0.3714	7	0.318	60	0	15.88	0.366	0.707	8.98	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	-1	-1	-1	-1	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			9,.,.	0.555556,.,.	
-aff_only	fam_pl	IP00FNY	chr20:52482965:ATT:A	1,.,.	7	0.318	22	0.89	DB	405	0.5742	0	0.3714	7	0.318	60	0	15.88	0.366	0.707	8.98	MQRankSum	-|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	-1	-1	-1	-1	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			11,.,.	0.636364,.,.	
-aff_only	fam_pl	C0011JZ	chr20:54033324:C:CT	1,.,.	7	0.318	22	0.348	DB	258	2.9436	29.934	-0.1273	6	0.273	57.8	0	29.73	-0.589	0.036	0.33	MQRankSum	T|downstream_gene_variant|MODIFIER|RP5-1010E17.2|ENSG00000224008|Transcript|ENST00000433766|lincRNA|||||||||||3549|-1||Clone_based_vega_gene||YES||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			7,.,.	1,.,.	
-aff_only	fam_pl	C0011K2	chr20:54033324:C:CT	1,.,.	7	0.318	22	0.348	DB	258	2.9436	29.934	-0.1273	6	0.273	57.8	0	29.73	-0.589	0.036	0.33	MQRankSum	T|downstream_gene_variant|MODIFIER|RP5-1010E17.2|ENSG00000224008|Transcript|ENST00000433766|lincRNA|||||||||||3549|-1||Clone_based_vega_gene||YES||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			7,.,.	1,.,.	
-aff_only	fam_pl	C0011K3	chr20:54033324:C:CT	1,.,.	7	0.318	22	0.348	DB	258	2.9436	29.934	-0.1273	6	0.273	57.8	0	29.73	-0.589	0.036	0.33	MQRankSum	T|downstream_gene_variant|MODIFIER|RP5-1010E17.2|ENSG00000224008|Transcript|ENST00000433766|lincRNA|||||||||||3549|-1||Clone_based_vega_gene||YES||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			5,.,.	1,.,.	
-aff_only	fam_pl	C0011KA	chr20:54033324:C:CT	1,.,1	7	0.318	22	0.348	DB	258	2.9436	29.934	-0.1273	6	0.273	57.8	0	29.73	-0.589	0.036	0.33	MQRankSum	T|downstream_gene_variant|MODIFIER|RP5-1010E17.2|ENSG00000224008|Transcript|ENST00000433766|lincRNA|||||||||||3549|-1||Clone_based_vega_gene||YES||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			7,.,7	0.571429,.,1	
-aff_only	fam_pl	IP00FNP	chr20:54033324:C:CT	1,.,1	7	0.318	22	0.348	DB	258	2.9436	29.934	-0.1273	6	0.273	57.8	0	29.73	-0.589	0.036	0.33	MQRankSum	T|downstream_gene_variant|MODIFIER|RP5-1010E17.2|ENSG00000224008|Transcript|ENST00000433766|lincRNA|||||||||||3549|-1||Clone_based_vega_gene||YES||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			1,.,7	1,.,1	
-aff_only	fam_pl	IP00FNW	chr20:54033324:C:CT	1,.,.	7	0.318	22	0.348	DB	258	2.9436	29.934	-0.1273	6	0.273	57.8	0	29.73	-0.589	0.036	0.33	MQRankSum	T|downstream_gene_variant|MODIFIER|RP5-1010E17.2|ENSG00000224008|Transcript|ENST00000433766|lincRNA|||||||||||3549|-1||Clone_based_vega_gene||YES||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			2,.,.	0.5,.,.	
-aff_only	fam_pl	IP00FNY	chr20:54033324:C:CT	1,.,.	7	0.318	22	0.348	DB	258	2.9436	29.934	-0.1273	6	0.273	57.8	0	29.73	-0.589	0.036	0.33	MQRankSum	T|downstream_gene_variant|MODIFIER|RP5-1010E17.2|ENSG00000224008|Transcript|ENST00000433766|lincRNA|||||||||||3549|-1||Clone_based_vega_gene||YES||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			3,.,.	0.333333,.,.	
-aff_only	fam_pl	C0011JZ	chr20:54066953:G:GT	1,.,.	7	0.318	22	0.566		424	6.4503	6.589	-0.3162	7	0.318	60	0	12.32	-0.02	1.008	8.23	MQRankSum	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP5-1010E17.1|ENSG00000235166|Transcript|ENST00000416190|lincRNA||4/7|ENST00000416190.1:n.685-1124_685-1123insT|||||||||1||Clone_based_vega_gene||YES||||	-1	0.536377	0.607916	2722	2223	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			14,.,.	0.428571,.,.	
-aff_only	fam_pl	C0011K2	chr20:54066953:G:GT	1,.,.	7	0.318	22	0.566		424	6.4503	6.589	-0.3162	7	0.318	60	0	12.32	-0.02	1.008	8.23	MQRankSum	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP5-1010E17.1|ENSG00000235166|Transcript|ENST00000416190|lincRNA||4/7|ENST00000416190.1:n.685-1124_685-1123insT|||||||||1||Clone_based_vega_gene||YES||||	-1	0.536377	0.607916	2722	2223	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,.	0.56,.,.	
-aff_only	fam_pl	C0011K3	chr20:54066953:G:GT	1,.,.	7	0.318	22	0.566		424	6.4503	6.589	-0.3162	7	0.318	60	0	12.32	-0.02	1.008	8.23	MQRankSum	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP5-1010E17.1|ENSG00000235166|Transcript|ENST00000416190|lincRNA||4/7|ENST00000416190.1:n.685-1124_685-1123insT|||||||||1||Clone_based_vega_gene||YES||||	-1	0.536377	0.607916	2722	2223	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.435897,.,.	
-aff_only	fam_pl	C0011KA	chr20:54066953:G:GT	1,.,1	7	0.318	22	0.566		424	6.4503	6.589	-0.3162	7	0.318	60	0	12.32	-0.02	1.008	8.23	MQRankSum	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP5-1010E17.1|ENSG00000235166|Transcript|ENST00000416190|lincRNA||4/7|ENST00000416190.1:n.685-1124_685-1123insT|||||||||1||Clone_based_vega_gene||YES||||	-1	0.536377	0.607916	2722	2223	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			10,.,25	1,.,0.56	
-aff_only	fam_pl	IP00FNP	chr20:54066953:G:GT	1,.,1	7	0.318	22	0.566		424	6.4503	6.589	-0.3162	7	0.318	60	0	12.32	-0.02	1.008	8.23	MQRankSum	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP5-1010E17.1|ENSG00000235166|Transcript|ENST00000416190|lincRNA||4/7|ENST00000416190.1:n.685-1124_685-1123insT|||||||||1||Clone_based_vega_gene||YES||||	-1	0.536377	0.607916	2722	2223	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,14	0.289474,.,0.428571	
-aff_only	fam_pl	IP00FNW	chr20:54066953:G:GT	1,.,.	7	0.318	22	0.566		424	6.4503	6.589	-0.3162	7	0.318	60	0	12.32	-0.02	1.008	8.23	MQRankSum	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP5-1010E17.1|ENSG00000235166|Transcript|ENST00000416190|lincRNA||4/7|ENST00000416190.1:n.685-1124_685-1123insT|||||||||1||Clone_based_vega_gene||YES||||	-1	0.536377	0.607916	2722	2223	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			17,.,.	0.647059,.,.	
-aff_only	fam_pl	IP00FNY	chr20:54066953:G:GT	1,.,.	7	0.318	22	0.566		424	6.4503	6.589	-0.3162	7	0.318	60	0	12.32	-0.02	1.008	8.23	MQRankSum	T|intron_variant&non_coding_transcript_variant|MODIFIER|RP5-1010E17.1|ENSG00000235166|Transcript|ENST00000416190|lincRNA||4/7|ENST00000416190.1:n.685-1124_685-1123insT|||||||||1||Clone_based_vega_gene||YES||||	-1	0.536377	0.607916	2722	2223	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.516129,.,.	
-aff_only	fam_pl	C0011JZ	chr20:56003327:T:G	1,.,.	7	0.318	22	-0.935	DB	363	9.0714	3.606	-0.4667	7	0.318	60.27	0	13.91	0.759	0.47	5	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.26186	0.310772	656	538	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,.	0.4,.,.	
-aff_only	fam_pl	C0011K2	chr20:56003327:T:G	1,.,.	7	0.318	22	-0.935	DB	363	9.0714	3.606	-0.4667	7	0.318	60.27	0	13.91	0.759	0.47	5	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.26186	0.310772	656	538	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.5,.,.	
-aff_only	fam_pl	C0011K3	chr20:56003327:T:G	1,.,.	7	0.318	22	-0.935	DB	363	9.0714	3.606	-0.4667	7	0.318	60.27	0	13.91	0.759	0.47	5	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.26186	0.310772	656	538	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			22,.,.	0.636364,.,.	
-aff_only	fam_pl	C0011KA	chr20:56003327:T:G	1,.,1	7	0.318	22	-0.935	DB	363	9.0714	3.606	-0.4667	7	0.318	60.27	0	13.91	0.759	0.47	5	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.26186	0.310772	656	538	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,28	0.48,.,0.5	
-aff_only	fam_pl	IP00FNP	chr20:56003327:T:G	1,.,1	7	0.318	22	-0.935	DB	363	9.0714	3.606	-0.4667	7	0.318	60.27	0	13.91	0.759	0.47	5	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.26186	0.310772	656	538	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			23,.,25	0.73913,.,0.4	
-aff_only	fam_pl	IP00FNW	chr20:56003327:T:G	1,.,.	7	0.318	22	-0.935	DB	363	9.0714	3.606	-0.4667	7	0.318	60.27	0	13.91	0.759	0.47	5	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.26186	0.310772	656	538	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			22,.,.	0.227273,.,.	
-aff_only	fam_pl	IP00FNY	chr20:56003327:T:G	1,.,.	7	0.318	22	-0.935	DB	363	9.0714	3.606	-0.4667	7	0.318	60.27	0	13.91	0.759	0.47	5	MQRankSum	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.26186	0.310772	656	538	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,.	0.35,.,.	
-aff_only	fam_pl	C0011JZ	chr20:57159924:TTTCC:T	1,.,.	7	0.318	22	0	DB	377	9.0714	1.121	-0.4667	7	0.318	59.65	0	18.3	0.094	0.604	6.39	MQRankSum	-|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-33855_944-33852del|||||||||1||HGNC|27152|||||	-1	0.417144	0.450964	1789	1316	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			17,.,.	0.470588,.,.	
-aff_only	fam_pl	C0011K2	chr20:57159924:TTTCC:T	1,.,.	7	0.318	22	0	DB	377	9.0714	1.121	-0.4667	7	0.318	59.65	0	18.3	0.094	0.604	6.39	MQRankSum	-|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-33855_944-33852del|||||||||1||HGNC|27152|||||	-1	0.417144	0.450964	1789	1316	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,.	0.48,.,.	
-aff_only	fam_pl	C0011K3	chr20:57159924:TTTCC:T	1,.,.	7	0.318	22	0	DB	377	9.0714	1.121	-0.4667	7	0.318	59.65	0	18.3	0.094	0.604	6.39	MQRankSum	-|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-33855_944-33852del|||||||||1||HGNC|27152|||||	-1	0.417144	0.450964	1789	1316	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.638889,.,.	
-aff_only	fam_pl	C0011KA	chr20:57159924:TTTCC:T	1,.,1	7	0.318	22	0	DB	377	9.0714	1.121	-0.4667	7	0.318	59.65	0	18.3	0.094	0.604	6.39	MQRankSum	-|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-33855_944-33852del|||||||||1||HGNC|27152|||||	-1	0.417144	0.450964	1789	1316	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,25	0.36,.,0.48	
-aff_only	fam_pl	IP00FNP	chr20:57159924:TTTCC:T	1,.,1	7	0.318	22	0	DB	377	9.0714	1.121	-0.4667	7	0.318	59.65	0	18.3	0.094	0.604	6.39	MQRankSum	-|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-33855_944-33852del|||||||||1||HGNC|27152|||||	-1	0.417144	0.450964	1789	1316	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,17	0.457143,.,0.470588	
-aff_only	fam_pl	IP00FNW	chr20:57159924:TTTCC:T	1,.,.	7	0.318	22	0	DB	377	9.0714	1.121	-0.4667	7	0.318	59.65	0	18.3	0.094	0.604	6.39	MQRankSum	-|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-33855_944-33852del|||||||||1||HGNC|27152|||||	-1	0.417144	0.450964	1789	1316	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			27,.,.	0.37037,.,.	
-aff_only	fam_pl	IP00FNY	chr20:57159924:TTTCC:T	1,.,.	7	0.318	22	0	DB	377	9.0714	1.121	-0.4667	7	0.318	59.65	0	18.3	0.094	0.604	6.39	MQRankSum	-|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-33855_944-33852del|||||||||1||HGNC|27152|||||	-1	0.417144	0.450964	1789	1316	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,.	0.576923,.,.	
-aff_only	fam_pl	C0011JZ	chr20:57164080:G:A	1,.,.	7	0.318	22	-1.066	DB	484	9.0714	3.527	-0.4667	7	0.318	60	0	12.29	0.658	0.769	23.65	MQRankSum	A|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-29716G>A|||||||||1||HGNC|27152|||||	-1	0.480499	0.492061	2472	1647	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			44,.,.	0.431818,.,.	
-aff_only	fam_pl	C0011K2	chr20:57164080:G:A	1,.,.	7	0.318	22	-1.066	DB	484	9.0714	3.527	-0.4667	7	0.318	60	0	12.29	0.658	0.769	23.65	MQRankSum	A|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-29716G>A|||||||||1||HGNC|27152|||||	-1	0.480499	0.492061	2472	1647	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.435897,.,.	
-aff_only	fam_pl	C0011K3	chr20:57164080:G:A	1,.,.	7	0.318	22	-1.066	DB	484	9.0714	3.527	-0.4667	7	0.318	60	0	12.29	0.658	0.769	23.65	MQRankSum	A|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-29716G>A|||||||||1||HGNC|27152|||||	-1	0.480499	0.492061	2472	1647	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.489362,.,.	
-aff_only	fam_pl	C0011KA	chr20:57164080:G:A	1,.,1	7	0.318	22	-1.066	DB	484	9.0714	3.527	-0.4667	7	0.318	60	0	12.29	0.658	0.769	23.65	MQRankSum	A|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-29716G>A|||||||||1||HGNC|27152|||||	-1	0.480499	0.492061	2472	1647	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,39	0.55,.,0.435897	
-aff_only	fam_pl	IP00FNP	chr20:57164080:G:A	1,.,1	7	0.318	22	-1.066	DB	484	9.0714	3.527	-0.4667	7	0.318	60	0	12.29	0.658	0.769	23.65	MQRankSum	A|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-29716G>A|||||||||1||HGNC|27152|||||	-1	0.480499	0.492061	2472	1647	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			53,.,44	0.339623,.,0.431818	
-aff_only	fam_pl	IP00FNW	chr20:57164080:G:A	1,.,.	7	0.318	22	-1.066	DB	484	9.0714	3.527	-0.4667	7	0.318	60	0	12.29	0.658	0.769	23.65	MQRankSum	A|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-29716G>A|||||||||1||HGNC|27152|||||	-1	0.480499	0.492061	2472	1647	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,.	0.52,.,.	
-aff_only	fam_pl	IP00FNY	chr20:57164080:G:A	1,.,.	7	0.318	22	-1.066	DB	484	9.0714	3.527	-0.4667	7	0.318	60	0	12.29	0.658	0.769	23.65	MQRankSum	A|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-29716G>A|||||||||1||HGNC|27152|||||	-1	0.480499	0.492061	2472	1647	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			61,.,.	0.459016,.,.	
-aff_only	fam_pl	C0011JZ	chr20:57246491:TGG:*	1,.,.	7	0.318	22	0	DB	431	9.3779	7.165	-0.4667	7	0.318	59.75	0	9.47	-0.044	1.03	4.91	MQRankSum		-1	0.372515	0.403123	1386	1055	2147483646	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,.	0.28,.,.	
-aff_only	fam_pl	C0011K2	chr20:57246491:TGG:*	1,.,.	7	0.318	22	0	DB	431	9.3779	7.165	-0.4667	7	0.318	59.75	0	9.47	-0.044	1.03	4.91	MQRankSum		-1	0.372515	0.403123	1386	1055	2147483646	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			30,.,.	0.533333,.,.	
-aff_only	fam_pl	C0011K3	chr20:57246491:TGG:*	1,.,.	7	0.318	22	0	DB	431	9.3779	7.165	-0.4667	7	0.318	59.75	0	9.47	-0.044	1.03	4.91	MQRankSum		-1	0.372515	0.403123	1386	1055	2147483646	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			49,.,.	0.530612,.,.	
-aff_only	fam_pl	C0011KA	chr20:57246491:TGG:*	1,.,1	7	0.318	22	0	DB	431	9.3779	7.165	-0.4667	7	0.318	59.75	0	9.47	-0.044	1.03	4.91	MQRankSum		-1	0.372515	0.403123	1386	1055	2147483646	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			17,.,30	1,.,0.533333	
-aff_only	fam_pl	IP00FNP	chr20:57246491:TGG:*	1,.,1	7	0.318	22	0	DB	431	9.3779	7.165	-0.4667	7	0.318	59.75	0	9.47	-0.044	1.03	4.91	MQRankSum		-1	0.372515	0.403123	1386	1055	2147483646	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,25	0.304348,.,0.28	
-aff_only	fam_pl	IP00FNW	chr20:57246491:TGG:*	1,.,.	7	0.318	22	0	DB	431	9.3779	7.165	-0.4667	7	0.318	59.75	0	9.47	-0.044	1.03	4.91	MQRankSum		-1	0.372515	0.403123	1386	1055	2147483646	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			8,.,.	1,.,.	
-aff_only	fam_pl	IP00FNY	chr20:57246491:TGG:*	1,.,.	7	0.318	22	0	DB	431	9.3779	7.165	-0.4667	7	0.318	59.75	0	9.47	-0.044	1.03	4.91	MQRankSum		-1	0.372515	0.403123	1386	1055	2147483646	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.333333,.,.	
-aff_only	fam_pl	C0011JZ	chr20:57311528:CA:C	1,.,.	7	0.318	22	0	DB	192	4.4261	9.388	-0.221	7	0.318	60.31	0	20.36	0	0.077	5.11	MQRankSum	-|downstream_gene_variant|MODIFIER|PIEZO1P2|ENSG00000237121|Transcript|ENST00000416241|unprocessed_pseudogene|||||||||||4059|-1||HGNC|42861|YES||||	-1	0.387299	0.38905	271	190	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			6,.,.	1,.,.	
-aff_only	fam_pl	C0011K2	chr20:57311528:CA:C	1,.,.	7	0.318	22	0	DB	192	4.4261	9.388	-0.221	7	0.318	60.31	0	20.36	0	0.077	5.11	MQRankSum	-|downstream_gene_variant|MODIFIER|PIEZO1P2|ENSG00000237121|Transcript|ENST00000416241|unprocessed_pseudogene|||||||||||4059|-1||HGNC|42861|YES||||	-1	0.387299	0.38905	271	190	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			6,.,.	1,.,.	
-aff_only	fam_pl	C0011K3	chr20:57311528:CA:C	1,.,.	7	0.318	22	0	DB	192	4.4261	9.388	-0.221	7	0.318	60.31	0	20.36	0	0.077	5.11	MQRankSum	-|downstream_gene_variant|MODIFIER|PIEZO1P2|ENSG00000237121|Transcript|ENST00000416241|unprocessed_pseudogene|||||||||||4059|-1||HGNC|42861|YES||||	-1	0.387299	0.38905	271	190	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			10,.,.	1,.,.	
-aff_only	fam_pl	C0011KA	chr20:57311528:CA:C	1,.,1	7	0.318	22	0	DB	192	4.4261	9.388	-0.221	7	0.318	60.31	0	20.36	0	0.077	5.11	MQRankSum	-|downstream_gene_variant|MODIFIER|PIEZO1P2|ENSG00000237121|Transcript|ENST00000416241|unprocessed_pseudogene|||||||||||4059|-1||HGNC|42861|YES||||	-1	0.387299	0.38905	271	190	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			6,.,6	1,.,1	
-aff_only	fam_pl	IP00FNP	chr20:57311528:CA:C	1,.,1	7	0.318	22	0	DB	192	4.4261	9.388	-0.221	7	0.318	60.31	0	20.36	0	0.077	5.11	MQRankSum	-|downstream_gene_variant|MODIFIER|PIEZO1P2|ENSG00000237121|Transcript|ENST00000416241|unprocessed_pseudogene|||||||||||4059|-1||HGNC|42861|YES||||	-1	0.387299	0.38905	271	190	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			3,.,6	1,.,1	
-aff_only	fam_pl	IP00FNW	chr20:57311528:CA:C	1,.,.	7	0.318	22	0	DB	192	4.4261	9.388	-0.221	7	0.318	60.31	0	20.36	0	0.077	5.11	MQRankSum	-|downstream_gene_variant|MODIFIER|PIEZO1P2|ENSG00000237121|Transcript|ENST00000416241|unprocessed_pseudogene|||||||||||4059|-1||HGNC|42861|YES||||	-1	0.387299	0.38905	271	190	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			5,.,.	0.8,.,.	
-aff_only	fam_pl	IP00FNY	chr20:57311528:CA:C	1,.,.	7	0.318	22	0	DB	192	4.4261	9.388	-0.221	7	0.318	60.31	0	20.36	0	0.077	5.11	MQRankSum	-|downstream_gene_variant|MODIFIER|PIEZO1P2|ENSG00000237121|Transcript|ENST00000416241|unprocessed_pseudogene|||||||||||4059|-1||HGNC|42861|YES||||	-1	0.387299	0.38905	271	190	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			3,.,.	1,.,.	
-aff_only	fam_pl	C0011JZ	chr21:9830249:G:A	1,.,.	7	0.318	22	1.94	DB	1399	9.0714	1.903	-0.6299	8	0.364	57.17	0.828	8	-0.978	0.653	-2.57	MQ	A|downstream_gene_variant|MODIFIER|MIR3687|ENSG00000264063|Transcript|ENST00000577708|miRNA|||||||||||3986|1||HGNC|38946|YES||||,A|downstream_gene_variant|MODIFIER|MIR3648|ENSG00000264462|Transcript|ENST00000581792|miRNA|||||||||||4238|1||HGNC|38941|YES||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			113,.,.	0.504425,.,.	
-aff_only	fam_pl	C0011K2	chr21:9830249:G:A	1,.,.	7	0.318	22	1.94	DB	1399	9.0714	1.903	-0.6299	8	0.364	57.17	0.828	8	-0.978	0.653	-2.57	MQ	A|downstream_gene_variant|MODIFIER|MIR3687|ENSG00000264063|Transcript|ENST00000577708|miRNA|||||||||||3986|1||HGNC|38946|YES||||,A|downstream_gene_variant|MODIFIER|MIR3648|ENSG00000264462|Transcript|ENST00000581792|miRNA|||||||||||4238|1||HGNC|38941|YES||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			114,.,.	0.473684,.,.	
-aff_only	fam_pl	C0011K3	chr21:9830249:G:A	1,.,.	7	0.318	22	1.94	DB	1399	9.0714	1.903	-0.6299	8	0.364	57.17	0.828	8	-0.978	0.653	-2.57	MQ	A|downstream_gene_variant|MODIFIER|MIR3687|ENSG00000264063|Transcript|ENST00000577708|miRNA|||||||||||3986|1||HGNC|38946|YES||||,A|downstream_gene_variant|MODIFIER|MIR3648|ENSG00000264462|Transcript|ENST00000581792|miRNA|||||||||||4238|1||HGNC|38941|YES||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			114,.,.	0.473684,.,.	
-aff_only	fam_pl	C0011KA	chr21:9830249:G:A	1,.,1	7	0.318	22	1.94	DB	1399	9.0714	1.903	-0.6299	8	0.364	57.17	0.828	8	-0.978	0.653	-2.57	MQ	A|downstream_gene_variant|MODIFIER|MIR3687|ENSG00000264063|Transcript|ENST00000577708|miRNA|||||||||||3986|1||HGNC|38946|YES||||,A|downstream_gene_variant|MODIFIER|MIR3648|ENSG00000264462|Transcript|ENST00000581792|miRNA|||||||||||4238|1||HGNC|38941|YES||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			81,.,114	0.518519,.,0.473684	
-aff_only	fam_pl	IP00FNP	chr21:9830249:G:A	1,.,1	7	0.318	22	1.94	DB	1399	9.0714	1.903	-0.6299	8	0.364	57.17	0.828	8	-0.978	0.653	-2.57	MQ	A|downstream_gene_variant|MODIFIER|MIR3687|ENSG00000264063|Transcript|ENST00000577708|miRNA|||||||||||3986|1||HGNC|38946|YES||||,A|downstream_gene_variant|MODIFIER|MIR3648|ENSG00000264462|Transcript|ENST00000581792|miRNA|||||||||||4238|1||HGNC|38941|YES||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			193,.,113	0.274611,.,0.504425	
-aff_only	fam_pl	IP00FNW	chr21:9830249:G:A	1,.,.	7	0.318	22	1.94	DB	1399	9.0714	1.903	-0.6299	8	0.364	57.17	0.828	8	-0.978	0.653	-2.57	MQ	A|downstream_gene_variant|MODIFIER|MIR3687|ENSG00000264063|Transcript|ENST00000577708|miRNA|||||||||||3986|1||HGNC|38946|YES||||,A|downstream_gene_variant|MODIFIER|MIR3648|ENSG00000264462|Transcript|ENST00000581792|miRNA|||||||||||4238|1||HGNC|38941|YES||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			89,.,.	0.157303,.,.	
-aff_only	fam_pl	IP00FNY	chr21:9830249:G:A	1,.,.	7	0.318	22	1.94	DB	1399	9.0714	1.903	-0.6299	8	0.364	57.17	0.828	8	-0.978	0.653	-2.57	MQ	A|downstream_gene_variant|MODIFIER|MIR3687|ENSG00000264063|Transcript|ENST00000577708|miRNA|||||||||||3986|1||HGNC|38946|YES||||,A|downstream_gene_variant|MODIFIER|MIR3648|ENSG00000264462|Transcript|ENST00000581792|miRNA|||||||||||4238|1||HGNC|38941|YES||||	-1	-1	-1	-1	-1	53	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			178,.,.	0.0955056,.,.	
-aff_only	fam_pl	C0011JZ	chrX:134937170:G:GAAAAGA	1,.,.	7	0.318	22	-0.14	DB	224	9.0714	0	-0.4671	7	0.318	25.64	0.134	24.15	0.845	1.041	-0.504	MQ	AAAAGA|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.170-6284_170-6279dup|||||||||-1||HGNC|33269|||||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000434966|protein_coding|||||||||||435|-1||HGNC|33269||CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000487941|protein_coding|||||||||||435|-1||HGNC|33269|YES|CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000494421|protein_coding|||||||||||620|-1||HGNC|33269||CCDS35405.1|||	-1	0.483591	0.479371	32	19	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			21,.,.	0.428571,.,.	
-aff_only	fam_pl	C0011K2	chrX:134937170:G:GAAAAGA	1,.,.	7	0.318	22	-0.14	DB	224	9.0714	0	-0.4671	7	0.318	25.64	0.134	24.15	0.845	1.041	-0.504	MQ	AAAAGA|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.170-6284_170-6279dup|||||||||-1||HGNC|33269|||||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000434966|protein_coding|||||||||||435|-1||HGNC|33269||CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000487941|protein_coding|||||||||||435|-1||HGNC|33269|YES|CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000494421|protein_coding|||||||||||620|-1||HGNC|33269||CCDS35405.1|||	-1	0.483591	0.479371	32	19	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			13,.,.	0.230769,.,.	
-aff_only	fam_pl	C0011K3	chrX:134937170:G:GAAAAGA	1,.,.	7	0.318	22	-0.14	DB	224	9.0714	0	-0.4671	7	0.318	25.64	0.134	24.15	0.845	1.041	-0.504	MQ	AAAAGA|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.170-6284_170-6279dup|||||||||-1||HGNC|33269|||||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000434966|protein_coding|||||||||||435|-1||HGNC|33269||CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000487941|protein_coding|||||||||||435|-1||HGNC|33269|YES|CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000494421|protein_coding|||||||||||620|-1||HGNC|33269||CCDS35405.1|||	-1	0.483591	0.479371	32	19	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			10,.,.	0.8,.,.	
-aff_only	fam_pl	C0011KA	chrX:134937170:G:GAAAAGA	1,.,1	7	0.318	22	-0.14	DB	224	9.0714	0	-0.4671	7	0.318	25.64	0.134	24.15	0.845	1.041	-0.504	MQ	AAAAGA|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.170-6284_170-6279dup|||||||||-1||HGNC|33269|||||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000434966|protein_coding|||||||||||435|-1||HGNC|33269||CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000487941|protein_coding|||||||||||435|-1||HGNC|33269|YES|CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000494421|protein_coding|||||||||||620|-1||HGNC|33269||CCDS35405.1|||	-1	0.483591	0.479371	32	19	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			25,.,13	0.36,.,0.230769	
-aff_only	fam_pl	IP00FNP	chrX:134937170:G:GAAAAGA	1,.,1	7	0.318	22	-0.14	DB	224	9.0714	0	-0.4671	7	0.318	25.64	0.134	24.15	0.845	1.041	-0.504	MQ	AAAAGA|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.170-6284_170-6279dup|||||||||-1||HGNC|33269|||||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000434966|protein_coding|||||||||||435|-1||HGNC|33269||CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000487941|protein_coding|||||||||||435|-1||HGNC|33269|YES|CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000494421|protein_coding|||||||||||620|-1||HGNC|33269||CCDS35405.1|||	-1	0.483591	0.479371	32	19	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,21	0.770833,.,0.428571	
-aff_only	fam_pl	IP00FNW	chrX:134937170:G:GAAAAGA	1,.,.	7	0.318	22	-0.14	DB	224	9.0714	0	-0.4671	7	0.318	25.64	0.134	24.15	0.845	1.041	-0.504	MQ	AAAAGA|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.170-6284_170-6279dup|||||||||-1||HGNC|33269|||||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000434966|protein_coding|||||||||||435|-1||HGNC|33269||CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000487941|protein_coding|||||||||||435|-1||HGNC|33269|YES|CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000494421|protein_coding|||||||||||620|-1||HGNC|33269||CCDS35405.1|||	-1	0.483591	0.479371	32	19	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			7,.,.	0.428571,.,.	
-aff_only	fam_pl	IP00FNY	chrX:134937170:G:GAAAAGA	1,.,.	7	0.318	22	-0.14	DB	224	9.0714	0	-0.4671	7	0.318	25.64	0.134	24.15	0.845	1.041	-0.504	MQ	AAAAGA|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.170-6284_170-6279dup|||||||||-1||HGNC|33269|||||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000434966|protein_coding|||||||||||435|-1||HGNC|33269||CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000487941|protein_coding|||||||||||435|-1||HGNC|33269|YES|CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000494421|protein_coding|||||||||||620|-1||HGNC|33269||CCDS35405.1|||	-1	0.483591	0.479371	32	19	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			23,.,.	0.608696,.,.	
-aff_only	fam_pl	C0011JZ	chrX:134948600:C:T	1,.,.	7	0.318	22	0.389	DB	504	9.0714	193.058	-0.4667	7	0.318	50.9	-5.098	15.19	-2.875	4.094	-257.2	FS	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1478G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-445G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.420312	0.404793	2	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			62,.,.	0.483871,.,.	
-aff_only	fam_pl	C0011K2	chrX:134948600:C:T	1,.,.	7	0.318	22	0.389	DB	504	9.0714	193.058	-0.4667	7	0.318	50.9	-5.098	15.19	-2.875	4.094	-257.2	FS	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1478G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-445G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.420312	0.404793	2	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			73,.,.	0.410959,.,.	
-aff_only	fam_pl	C0011K3	chrX:134948600:C:T	1,.,.	7	0.318	22	0.389	DB	504	9.0714	193.058	-0.4667	7	0.318	50.9	-5.098	15.19	-2.875	4.094	-257.2	FS	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1478G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-445G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.420312	0.404793	2	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			53,.,.	0.679245,.,.	
-aff_only	fam_pl	C0011KA	chrX:134948600:C:T	1,.,1	7	0.318	22	0.389	DB	504	9.0714	193.058	-0.4667	7	0.318	50.9	-5.098	15.19	-2.875	4.094	-257.2	FS	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1478G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-445G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.420312	0.404793	2	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			71,.,73	0.464789,.,0.410959	
-aff_only	fam_pl	IP00FNP	chrX:134948600:C:T	1,.,1	7	0.318	22	0.389	DB	504	9.0714	193.058	-0.4667	7	0.318	50.9	-5.098	15.19	-2.875	4.094	-257.2	FS	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1478G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-445G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.420312	0.404793	2	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			56,.,62	0.160714,.,0.483871	
-aff_only	fam_pl	IP00FNW	chrX:134948600:C:T	1,.,.	7	0.318	22	0.389	DB	504	9.0714	193.058	-0.4667	7	0.318	50.9	-5.098	15.19	-2.875	4.094	-257.2	FS	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1478G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-445G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.420312	0.404793	2	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			28,.,.	0.0714286,.,.	
-aff_only	fam_pl	IP00FNY	chrX:134948600:C:T	1,.,.	7	0.318	22	0.389	DB	504	9.0714	193.058	-0.4667	7	0.318	50.9	-5.098	15.19	-2.875	4.094	-257.2	FS	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1478G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-445G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.420312	0.404793	2	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.139535,.,.	
-aff_only	fam_pl	C0011JZ	chrX:134948607:G:A	1,.,.	7	0.318	22	-0.104	DB	548	9.0714	106.681	-0.4667	7	0.318	50.71	-5.313	19.31	-3.049	4.047	-85.24	ReadPosRankSum	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1471C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-452C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.421811	0.406186	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			69,.,.	0.521739,.,.	
-aff_only	fam_pl	C0011K2	chrX:134948607:G:A	1,.,.	7	0.318	22	-0.104	DB	548	9.0714	106.681	-0.4667	7	0.318	50.71	-5.313	19.31	-3.049	4.047	-85.24	ReadPosRankSum	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1471C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-452C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.421811	0.406186	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			82,.,.	0.439024,.,.	
-aff_only	fam_pl	C0011K3	chrX:134948607:G:A	1,.,.	7	0.318	22	-0.104	DB	548	9.0714	106.681	-0.4667	7	0.318	50.71	-5.313	19.31	-3.049	4.047	-85.24	ReadPosRankSum	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1471C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-452C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.421811	0.406186	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			57,.,.	0.684211,.,.	
-aff_only	fam_pl	C0011KA	chrX:134948607:G:A	1,.,1	7	0.318	22	-0.104	DB	548	9.0714	106.681	-0.4667	7	0.318	50.71	-5.313	19.31	-3.049	4.047	-85.24	ReadPosRankSum	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1471C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-452C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.421811	0.406186	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			69,.,82	0.478261,.,0.439024	
-aff_only	fam_pl	IP00FNP	chrX:134948607:G:A	1,.,1	7	0.318	22	-0.104	DB	548	9.0714	106.681	-0.4667	7	0.318	50.71	-5.313	19.31	-3.049	4.047	-85.24	ReadPosRankSum	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1471C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-452C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.421811	0.406186	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			70,.,69	0.342857,.,0.521739	
-aff_only	fam_pl	IP00FNW	chrX:134948607:G:A	1,.,.	7	0.318	22	-0.104	DB	548	9.0714	106.681	-0.4667	7	0.318	50.71	-5.313	19.31	-3.049	4.047	-85.24	ReadPosRankSum	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1471C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-452C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.421811	0.406186	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			31,.,.	0.290323,.,.	
-aff_only	fam_pl	IP00FNY	chrX:134948607:G:A	1,.,.	7	0.318	22	-0.104	DB	548	9.0714	106.681	-0.4667	7	0.318	50.71	-5.313	19.31	-3.049	4.047	-85.24	ReadPosRankSum	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1471C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-452C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.421811	0.406186	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,.	0.34,.,.	
-aff_only	fam_pl	C0011JZ	chrX:134948616:C:G	1,.,.	7	0.318	22	-0.522	DB	613	9.0714	100.79	-0.4667	7	0.318	48.97	-6.059	21.77	-2.647	3.591	-77.59	FS	G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1462G>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-461G>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.429463	0.416219	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			78,.,.	0.551282,.,.	
-aff_only	fam_pl	C0011K2	chrX:134948616:C:G	1,.,.	7	0.318	22	-0.522	DB	613	9.0714	100.79	-0.4667	7	0.318	48.97	-6.059	21.77	-2.647	3.591	-77.59	FS	G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1462G>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-461G>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.429463	0.416219	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			86,.,.	0.476744,.,.	
-aff_only	fam_pl	C0011K3	chrX:134948616:C:G	1,.,.	7	0.318	22	-0.522	DB	613	9.0714	100.79	-0.4667	7	0.318	48.97	-6.059	21.77	-2.647	3.591	-77.59	FS	G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1462G>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-461G>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.429463	0.416219	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			65,.,.	0.707692,.,.	
-aff_only	fam_pl	C0011KA	chrX:134948616:C:G	1,.,1	7	0.318	22	-0.522	DB	613	9.0714	100.79	-0.4667	7	0.318	48.97	-6.059	21.77	-2.647	3.591	-77.59	FS	G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1462G>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-461G>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.429463	0.416219	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			78,.,86	0.512821,.,0.476744	
-aff_only	fam_pl	IP00FNP	chrX:134948616:C:G	1,.,1	7	0.318	22	-0.522	DB	613	9.0714	100.79	-0.4667	7	0.318	48.97	-6.059	21.77	-2.647	3.591	-77.59	FS	G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1462G>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-461G>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.429463	0.416219	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			101,.,78	0.544554,.,0.551282	
-aff_only	fam_pl	IP00FNW	chrX:134948616:C:G	1,.,.	7	0.318	22	-0.522	DB	613	9.0714	100.79	-0.4667	7	0.318	48.97	-6.059	21.77	-2.647	3.591	-77.59	FS	G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1462G>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-461G>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.429463	0.416219	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.424242,.,.	
-aff_only	fam_pl	IP00FNY	chrX:134948616:C:G	1,.,.	7	0.318	22	-0.522	DB	613	9.0714	100.79	-0.4667	7	0.318	48.97	-6.059	21.77	-2.647	3.591	-77.59	FS	G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1462G>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-461G>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.429463	0.416219	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			55,.,.	0.436364,.,.	
-aff_only	fam_pl	C0011JZ	chrX:134948621:G:A	1,.,.	7	0.318	22	-0.303	DB	648	9.0714	94.1	-0.4667	7	0.318	47.7	-6.004	23.19	-1.462	3.563	-69.37	FS	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1457C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-466C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.432844	0.420593	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			78,.,.	0.576923,.,.	
-aff_only	fam_pl	C0011K2	chrX:134948621:G:A	1,.,.	7	0.318	22	-0.303	DB	648	9.0714	94.1	-0.4667	7	0.318	47.7	-6.004	23.19	-1.462	3.563	-69.37	FS	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1457C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-466C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.432844	0.420593	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			91,.,.	0.483516,.,.	
-aff_only	fam_pl	C0011K3	chrX:134948621:G:A	1,.,.	7	0.318	22	-0.303	DB	648	9.0714	94.1	-0.4667	7	0.318	47.7	-6.004	23.19	-1.462	3.563	-69.37	FS	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1457C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-466C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.432844	0.420593	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			73,.,.	0.712329,.,.	
-aff_only	fam_pl	C0011KA	chrX:134948621:G:A	1,.,1	7	0.318	22	-0.303	DB	648	9.0714	94.1	-0.4667	7	0.318	47.7	-6.004	23.19	-1.462	3.563	-69.37	FS	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1457C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-466C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.432844	0.420593	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			79,.,91	0.531646,.,0.483516	
-aff_only	fam_pl	IP00FNP	chrX:134948621:G:A	1,.,1	7	0.318	22	-0.303	DB	648	9.0714	94.1	-0.4667	7	0.318	47.7	-6.004	23.19	-1.462	3.563	-69.37	FS	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1457C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-466C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.432844	0.420593	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			114,.,78	0.578947,.,0.576923	
-aff_only	fam_pl	IP00FNW	chrX:134948621:G:A	1,.,.	7	0.318	22	-0.303	DB	648	9.0714	94.1	-0.4667	7	0.318	47.7	-6.004	23.19	-1.462	3.563	-69.37	FS	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1457C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-466C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.432844	0.420593	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.457143,.,.	
-aff_only	fam_pl	IP00FNY	chrX:134948621:G:A	1,.,.	7	0.318	22	-0.303	DB	648	9.0714	94.1	-0.4667	7	0.318	47.7	-6.004	23.19	-1.462	3.563	-69.37	FS	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1457C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-466C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.432844	0.420593	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			61,.,.	0.47541,.,.	
-aff_only	fam_pl	C0011JZ	chrX:134948627:G:T	1,.,.	7	0.318	22	0	DB	689	9.0714	77.771	-0.4667	7	0.318	46.64	-6.154	23.69	-0.588	3.175	-49.84	FS	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1451C>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-472C>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.433457	0.422021	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			80,.,.	0.575,.,.	
-aff_only	fam_pl	C0011K2	chrX:134948627:G:T	1,.,.	7	0.318	22	0	DB	689	9.0714	77.771	-0.4667	7	0.318	46.64	-6.154	23.69	-0.588	3.175	-49.84	FS	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1451C>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-472C>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.433457	0.422021	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			97,.,.	0.494845,.,.	
-aff_only	fam_pl	C0011K3	chrX:134948627:G:T	1,.,.	7	0.318	22	0	DB	689	9.0714	77.771	-0.4667	7	0.318	46.64	-6.154	23.69	-0.588	3.175	-49.84	FS	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1451C>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-472C>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.433457	0.422021	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			75,.,.	0.733333,.,.	
-aff_only	fam_pl	C0011KA	chrX:134948627:G:T	1,.,1	7	0.318	22	0	DB	689	9.0714	77.771	-0.4667	7	0.318	46.64	-6.154	23.69	-0.588	3.175	-49.84	FS	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1451C>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-472C>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.433457	0.422021	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			81,.,97	0.530864,.,0.494845	
-aff_only	fam_pl	IP00FNP	chrX:134948627:G:T	1,.,1	7	0.318	22	0	DB	689	9.0714	77.771	-0.4667	7	0.318	46.64	-6.154	23.69	-0.588	3.175	-49.84	FS	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1451C>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-472C>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.433457	0.422021	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			134,.,80	0.604478,.,0.575	
-aff_only	fam_pl	IP00FNW	chrX:134948627:G:T	1,.,.	7	0.318	22	0	DB	689	9.0714	77.771	-0.4667	7	0.318	46.64	-6.154	23.69	-0.588	3.175	-49.84	FS	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1451C>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-472C>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.433457	0.422021	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,.	0.55,.,.	
-aff_only	fam_pl	IP00FNY	chrX:134948627:G:T	1,.,.	7	0.318	22	0	DB	689	9.0714	77.771	-0.4667	7	0.318	46.64	-6.154	23.69	-0.588	3.175	-49.84	FS	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1451C>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-472C>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.433457	0.422021	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			65,.,.	0.538462,.,.	
-aff_only	fam_pl	C0011JZ	chrX:134948631:T:C	1,.,.	7	0.318	22	0	DB	714	9.0714	73.518	-0.4667	7	0.318	45.91	-6.184	24.31	0.148	3.066	-45.68	MQ	C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1447A>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-476A>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.434103	0.42281	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			80,.,.	0.5875,.,.	
-aff_only	fam_pl	C0011K2	chrX:134948631:T:C	1,.,.	7	0.318	22	0	DB	714	9.0714	73.518	-0.4667	7	0.318	45.91	-6.184	24.31	0.148	3.066	-45.68	MQ	C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1447A>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-476A>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.434103	0.42281	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			97,.,.	0.494845,.,.	
-aff_only	fam_pl	C0011K3	chrX:134948631:T:C	1,.,.	7	0.318	22	0	DB	714	9.0714	73.518	-0.4667	7	0.318	45.91	-6.184	24.31	0.148	3.066	-45.68	MQ	C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1447A>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-476A>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.434103	0.42281	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			76,.,.	0.736842,.,.	
-aff_only	fam_pl	C0011KA	chrX:134948631:T:C	1,.,1	7	0.318	22	0	DB	714	9.0714	73.518	-0.4667	7	0.318	45.91	-6.184	24.31	0.148	3.066	-45.68	MQ	C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1447A>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-476A>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.434103	0.42281	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			81,.,97	0.54321,.,0.494845	
-aff_only	fam_pl	IP00FNP	chrX:134948631:T:C	1,.,1	7	0.318	22	0	DB	714	9.0714	73.518	-0.4667	7	0.318	45.91	-6.184	24.31	0.148	3.066	-45.68	MQ	C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1447A>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-476A>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.434103	0.42281	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			149,.,80	0.630872,.,0.5875	
-aff_only	fam_pl	IP00FNW	chrX:134948631:T:C	1,.,.	7	0.318	22	0	DB	714	9.0714	73.518	-0.4667	7	0.318	45.91	-6.184	24.31	0.148	3.066	-45.68	MQ	C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1447A>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-476A>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.434103	0.42281	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,.	0.586957,.,.	
-aff_only	fam_pl	IP00FNY	chrX:134948631:T:C	1,.,.	7	0.318	22	0	DB	714	9.0714	73.518	-0.4667	7	0.318	45.91	-6.184	24.31	0.148	3.066	-45.68	MQ	C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1447A>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-476A>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.434103	0.42281	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			68,.,.	0.558824,.,.	
-aff_only	fam_pl	C0011JZ	chrX:134948635:A:C	1,.,.	7	0.318	22	0.035	DB	735	9.0714	66.587	-0.4667	7	0.318	45.42	-6.252	23.83	-0.345	2.865	-38.84	MQ	C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1443T>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-480T>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.434903	0.42377	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			81,.,.	0.604938,.,.	
-aff_only	fam_pl	C0011K2	chrX:134948635:A:C	1,.,.	7	0.318	22	0.035	DB	735	9.0714	66.587	-0.4667	7	0.318	45.42	-6.252	23.83	-0.345	2.865	-38.84	MQ	C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1443T>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-480T>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.434903	0.42377	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			97,.,.	0.505155,.,.	
-aff_only	fam_pl	C0011K3	chrX:134948635:A:C	1,.,.	7	0.318	22	0.035	DB	735	9.0714	66.587	-0.4667	7	0.318	45.42	-6.252	23.83	-0.345	2.865	-38.84	MQ	C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1443T>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-480T>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.434903	0.42377	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			80,.,.	0.7625,.,.	
-aff_only	fam_pl	C0011KA	chrX:134948635:A:C	1,.,1	7	0.318	22	0.035	DB	735	9.0714	66.587	-0.4667	7	0.318	45.42	-6.252	23.83	-0.345	2.865	-38.84	MQ	C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1443T>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-480T>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.434903	0.42377	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			82,.,97	0.560976,.,0.505155	
-aff_only	fam_pl	IP00FNP	chrX:134948635:A:C	1,.,1	7	0.318	22	0.035	DB	735	9.0714	66.587	-0.4667	7	0.318	45.42	-6.252	23.83	-0.345	2.865	-38.84	MQ	C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1443T>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-480T>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.434903	0.42377	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			155,.,81	0.625806,.,0.604938	
-aff_only	fam_pl	IP00FNW	chrX:134948635:A:C	1,.,.	7	0.318	22	0.035	DB	735	9.0714	66.587	-0.4667	7	0.318	45.42	-6.252	23.83	-0.345	2.865	-38.84	MQ	C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1443T>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-480T>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.434903	0.42377	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,.	0.604167,.,.	
-aff_only	fam_pl	IP00FNY	chrX:134948635:A:C	1,.,.	7	0.318	22	0.035	DB	735	9.0714	66.587	-0.4667	7	0.318	45.42	-6.252	23.83	-0.345	2.865	-38.84	MQ	C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1443T>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-480T>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.434903	0.42377	3	2	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			75,.,.	0.6,.,.	
-aff_only	fam_pl	C0011JZ	chrX:134948709:C:T	1,.,.	7	0.318	22	2.11		1113	9.0714	22.023	-0.4667	7	0.318	37.91	2.79	5.06	-0.122	0.396	-10.5	MQ	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1369G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-554G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.293792	0.302233	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			118,.,.	0.127119,.,.	
-aff_only	fam_pl	C0011K2	chrX:134948709:C:T	1,.,.	7	0.318	22	2.11		1113	9.0714	22.023	-0.4667	7	0.318	37.91	2.79	5.06	-0.122	0.396	-10.5	MQ	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1369G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-554G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.293792	0.302233	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			124,.,.	0.185484,.,.	
-aff_only	fam_pl	C0011K3	chrX:134948709:C:T	1,.,.	7	0.318	22	2.11		1113	9.0714	22.023	-0.4667	7	0.318	37.91	2.79	5.06	-0.122	0.396	-10.5	MQ	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1369G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-554G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.293792	0.302233	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			121,.,.	0.165289,.,.	
-aff_only	fam_pl	C0011KA	chrX:134948709:C:T	1,.,1	7	0.318	22	2.11		1113	9.0714	22.023	-0.4667	7	0.318	37.91	2.79	5.06	-0.122	0.396	-10.5	MQ	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1369G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-554G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.293792	0.302233	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			124,.,124	0.177419,.,0.185484	
-aff_only	fam_pl	IP00FNP	chrX:134948709:C:T	1,.,1	7	0.318	22	2.11		1113	9.0714	22.023	-0.4667	7	0.318	37.91	2.79	5.06	-0.122	0.396	-10.5	MQ	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1369G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-554G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.293792	0.302233	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			315,.,118	0.190476,.,0.127119	
-aff_only	fam_pl	IP00FNW	chrX:134948709:C:T	1,.,.	7	0.318	22	2.11		1113	9.0714	22.023	-0.4667	7	0.318	37.91	2.79	5.06	-0.122	0.396	-10.5	MQ	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1369G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-554G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.293792	0.302233	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			69,.,.	0.275362,.,.	
-aff_only	fam_pl	IP00FNY	chrX:134948709:C:T	1,.,.	7	0.318	22	2.11		1113	9.0714	22.023	-0.4667	7	0.318	37.91	2.79	5.06	-0.122	0.396	-10.5	MQ	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1369G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-554G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.293792	0.302233	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			122,.,.	0.196721,.,.	
-aff_only	fam_pl	C0011JZ	chrX:134948718:C:T	1,.,.	7	0.318	22	0.15	DB	1082	9.0714	21.995	-0.4667	7	0.318	37.69	2.47	5.23	0.147	0.466	-10.47	MQ	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1360G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-563G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.287569	0.296629	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			119,.,.	0.117647,.,.	
-aff_only	fam_pl	C0011K2	chrX:134948718:C:T	1,.,.	7	0.318	22	0.15	DB	1082	9.0714	21.995	-0.4667	7	0.318	37.69	2.47	5.23	0.147	0.466	-10.47	MQ	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1360G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-563G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.287569	0.296629	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			122,.,.	0.172131,.,.	
-aff_only	fam_pl	C0011K3	chrX:134948718:C:T	1,.,.	7	0.318	22	0.15	DB	1082	9.0714	21.995	-0.4667	7	0.318	37.69	2.47	5.23	0.147	0.466	-10.47	MQ	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1360G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-563G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.287569	0.296629	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			122,.,.	0.163934,.,.	
-aff_only	fam_pl	C0011KA	chrX:134948718:C:T	1,.,1	7	0.318	22	0.15	DB	1082	9.0714	21.995	-0.4667	7	0.318	37.69	2.47	5.23	0.147	0.466	-10.47	MQ	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1360G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-563G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.287569	0.296629	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			125,.,122	0.184,.,0.172131	
-aff_only	fam_pl	IP00FNP	chrX:134948718:C:T	1,.,1	7	0.318	22	0.15	DB	1082	9.0714	21.995	-0.4667	7	0.318	37.69	2.47	5.23	0.147	0.466	-10.47	MQ	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1360G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-563G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.287569	0.296629	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			286,.,119	0.199301,.,0.117647	
-aff_only	fam_pl	IP00FNW	chrX:134948718:C:T	1,.,.	7	0.318	22	0.15	DB	1082	9.0714	21.995	-0.4667	7	0.318	37.69	2.47	5.23	0.147	0.466	-10.47	MQ	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1360G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-563G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.287569	0.296629	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			68,.,.	0.294118,.,.	
-aff_only	fam_pl	IP00FNY	chrX:134948718:C:T	1,.,.	7	0.318	22	0.15	DB	1082	9.0714	21.995	-0.4667	7	0.318	37.69	2.47	5.23	0.147	0.466	-10.47	MQ	T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1360G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-563G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.287569	0.296629	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			119,.,.	0.210084,.,.	
-aff_only	fam_pl	C0011JZ	chrX:134948824:G:A	1,.,.	7	0.318	22	2.06	DB	752	9.0714	0.606	-0.4667	7	0.318	28.95	0.666	4.61	0.497	0.787	-9.321	MQ	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1254C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-669C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.374159	0.36645	1	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			97,.,.	0.237113,.,.	
-aff_only	fam_pl	C0011K2	chrX:134948824:G:A	1,.,.	7	0.318	22	2.06	DB	752	9.0714	0.606	-0.4667	7	0.318	28.95	0.666	4.61	0.497	0.787	-9.321	MQ	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1254C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-669C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.374159	0.36645	1	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			111,.,.	0.225225,.,.	
-aff_only	fam_pl	C0011K3	chrX:134948824:G:A	1,.,.	7	0.318	22	2.06	DB	752	9.0714	0.606	-0.4667	7	0.318	28.95	0.666	4.61	0.497	0.787	-9.321	MQ	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1254C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-669C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.374159	0.36645	1	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			84,.,.	0.214286,.,.	
-aff_only	fam_pl	C0011KA	chrX:134948824:G:A	1,.,1	7	0.318	22	2.06	DB	752	9.0714	0.606	-0.4667	7	0.318	28.95	0.666	4.61	0.497	0.787	-9.321	MQ	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1254C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-669C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.374159	0.36645	1	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			88,.,111	0.227273,.,0.225225	
-aff_only	fam_pl	IP00FNP	chrX:134948824:G:A	1,.,1	7	0.318	22	2.06	DB	752	9.0714	0.606	-0.4667	7	0.318	28.95	0.666	4.61	0.497	0.787	-9.321	MQ	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1254C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-669C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.374159	0.36645	1	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			132,.,97	0.257576,.,0.237113	
-aff_only	fam_pl	IP00FNW	chrX:134948824:G:A	1,.,.	7	0.318	22	2.06	DB	752	9.0714	0.606	-0.4667	7	0.318	28.95	0.666	4.61	0.497	0.787	-9.321	MQ	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1254C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-669C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.374159	0.36645	1	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,.	0.354167,.,.	
-aff_only	fam_pl	IP00FNY	chrX:134948824:G:A	1,.,.	7	0.318	22	2.06	DB	752	9.0714	0.606	-0.4667	7	0.318	28.95	0.666	4.61	0.497	0.787	-9.321	MQ	A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1254C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-669C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.374159	0.36645	1	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			88,.,.	0.318182,.,.	
-aff_only	fam_pl	C0011JZ	chrX:134949149:A:G	1,.,.	7	0.318	22	-0.514	DB	387	9.0714	3.677	-0.4667	7	0.318	27.22	-0.372	6.81	1.72	0.929	-10.09	MQ	G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+929T>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.169+929T>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.407801	0.401294	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			43,.,.	0.325581,.,.	
-aff_only	fam_pl	C0011K2	chrX:134949149:A:G	1,.,.	7	0.318	22	-0.514	DB	387	9.0714	3.677	-0.4667	7	0.318	27.22	-0.372	6.81	1.72	0.929	-10.09	MQ	G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+929T>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.169+929T>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.407801	0.401294	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			56,.,.	0.267857,.,.	
-aff_only	fam_pl	C0011K3	chrX:134949149:A:G	1,.,.	7	0.318	22	-0.514	DB	387	9.0714	3.677	-0.4667	7	0.318	27.22	-0.372	6.81	1.72	0.929	-10.09	MQ	G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+929T>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.169+929T>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.407801	0.401294	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,.	0.413793,.,.	
-aff_only	fam_pl	C0011KA	chrX:134949149:A:G	1,.,1	7	0.318	22	-0.514	DB	387	9.0714	3.677	-0.4667	7	0.318	27.22	-0.372	6.81	1.72	0.929	-10.09	MQ	G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+929T>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.169+929T>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.407801	0.401294	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,56	0.297872,.,0.267857	
-aff_only	fam_pl	IP00FNP	chrX:134949149:A:G	1,.,1	7	0.318	22	-0.514	DB	387	9.0714	3.677	-0.4667	7	0.318	27.22	-0.372	6.81	1.72	0.929	-10.09	MQ	G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+929T>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.169+929T>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.407801	0.401294	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,43	0.411765,.,0.325581	
-aff_only	fam_pl	IP00FNW	chrX:134949149:A:G	1,.,.	7	0.318	22	-0.514	DB	387	9.0714	3.677	-0.4667	7	0.318	27.22	-0.372	6.81	1.72	0.929	-10.09	MQ	G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+929T>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.169+929T>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.407801	0.401294	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			18,.,.	0.333333,.,.	
-aff_only	fam_pl	IP00FNY	chrX:134949149:A:G	1,.,.	7	0.318	22	-0.514	DB	387	9.0714	3.677	-0.4667	7	0.318	27.22	-0.372	6.81	1.72	0.929	-10.09	MQ	G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+929T>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.169+929T>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||	-1	0.407801	0.401294	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.555556,.,.	
-aff_only	fam_pl	C0011JZ	chrX:140078339:T:C	1,.,.	7	0.318	22	1.05		406	9.0714	1.994	-0.4713	7	0.318	57.31	0.195	9.9	0.441	0.577	-2.305	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-298A8.2|ENSG00000229269|Transcript|ENST00000413328|lincRNA||1/2|ENST00000413328.1:n.124-475T>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.146135	0.141665	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			42,.,.	0.261905,.,.	
-aff_only	fam_pl	C0011K2	chrX:140078339:T:C	1,.,.	7	0.318	22	1.05		406	9.0714	1.994	-0.4713	7	0.318	57.31	0.195	9.9	0.441	0.577	-2.305	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-298A8.2|ENSG00000229269|Transcript|ENST00000413328|lincRNA||1/2|ENST00000413328.1:n.124-475T>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.146135	0.141665	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			54,.,.	0.314815,.,.	
-aff_only	fam_pl	C0011K3	chrX:140078339:T:C	1,.,.	7	0.318	22	1.05		406	9.0714	1.994	-0.4713	7	0.318	57.31	0.195	9.9	0.441	0.577	-2.305	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-298A8.2|ENSG00000229269|Transcript|ENST00000413328|lincRNA||1/2|ENST00000413328.1:n.124-475T>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.146135	0.141665	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.6,.,.	
-aff_only	fam_pl	C0011KA	chrX:140078339:T:C	1,.,1	7	0.318	22	1.05		406	9.0714	1.994	-0.4713	7	0.318	57.31	0.195	9.9	0.441	0.577	-2.305	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-298A8.2|ENSG00000229269|Transcript|ENST00000413328|lincRNA||1/2|ENST00000413328.1:n.124-475T>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.146135	0.141665	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,54	0.333333,.,0.314815	
-aff_only	fam_pl	IP00FNP	chrX:140078339:T:C	1,.,1	7	0.318	22	1.05		406	9.0714	1.994	-0.4713	7	0.318	57.31	0.195	9.9	0.441	0.577	-2.305	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-298A8.2|ENSG00000229269|Transcript|ENST00000413328|lincRNA||1/2|ENST00000413328.1:n.124-475T>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.146135	0.141665	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,42	0.333333,.,0.261905	
-aff_only	fam_pl	IP00FNW	chrX:140078339:T:C	1,.,.	7	0.318	22	1.05		406	9.0714	1.994	-0.4713	7	0.318	57.31	0.195	9.9	0.441	0.577	-2.305	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-298A8.2|ENSG00000229269|Transcript|ENST00000413328|lincRNA||1/2|ENST00000413328.1:n.124-475T>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.146135	0.141665	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			26,.,.	0.384615,.,.	
-aff_only	fam_pl	IP00FNY	chrX:140078339:T:C	1,.,.	7	0.318	22	1.05		406	9.0714	1.994	-0.4713	7	0.318	57.31	0.195	9.9	0.441	0.577	-2.305	MQ	C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-298A8.2|ENSG00000229269|Transcript|ENST00000413328|lincRNA||1/2|ENST00000413328.1:n.124-475T>C|||||||||1||Clone_based_vega_gene||YES||||	-1	0.146135	0.141665	0	0	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			49,.,.	0.469388,.,.	
-aff_only	fam_pl	C0011JZ	chrX:140780417:A:G	1,.,.	7	0.318	22	-1.672	DB	307	9.0714	13.067	-0.4558	7	0.318	55.06	-2.028	4.2	1.22	0.179	-2.505	MQ	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0578861	0.0275727	0	0	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			35,.,.	0.114286,.,.	
-aff_only	fam_pl	C0011K2	chrX:140780417:A:G	1,.,.	7	0.318	22	-1.672	DB	307	9.0714	13.067	-0.4558	7	0.318	55.06	-2.028	4.2	1.22	0.179	-2.505	MQ	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0578861	0.0275727	0	0	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			36,.,.	0.0833333,.,.	
-aff_only	fam_pl	C0011K3	chrX:140780417:A:G	1,.,.	7	0.318	22	-1.672	DB	307	9.0714	13.067	-0.4558	7	0.318	55.06	-2.028	4.2	1.22	0.179	-2.505	MQ	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0578861	0.0275727	0	0	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			18,.,.	0.222222,.,.	
-aff_only	fam_pl	C0011KA	chrX:140780417:A:G	1,.,1	7	0.318	22	-1.672	DB	307	9.0714	13.067	-0.4558	7	0.318	55.06	-2.028	4.2	1.22	0.179	-2.505	MQ	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0578861	0.0275727	0	0	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			23,.,36	0.173913,.,0.0833333	
-aff_only	fam_pl	IP00FNP	chrX:140780417:A:G	1,.,1	7	0.318	22	-1.672	DB	307	9.0714	13.067	-0.4558	7	0.318	55.06	-2.028	4.2	1.22	0.179	-2.505	MQ	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0578861	0.0275727	0	0	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,35	0.0882353,.,0.114286	
-aff_only	fam_pl	IP00FNW	chrX:140780417:A:G	1,.,.	7	0.318	22	-1.672	DB	307	9.0714	13.067	-0.4558	7	0.318	55.06	-2.028	4.2	1.22	0.179	-2.505	MQ	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0578861	0.0275727	0	0	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			20,.,.	0.35,.,.	
-aff_only	fam_pl	IP00FNY	chrX:140780417:A:G	1,.,.	7	0.318	22	-1.672	DB	307	9.0714	13.067	-0.4558	7	0.318	55.06	-2.028	4.2	1.22	0.179	-2.505	MQ	G|intergenic_variant|MODIFIER|||||||||||||||||||||||||	-1	0.0578861	0.0275727	0	0	64	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			29,.,.	0.241379,.,.	
-aff_only	fam_pl	C0011JZ	chrX:140785739:A:C	1,.,.	7	0.318	22	-0.057	DB	424	9.0714	1.077	-0.4667	7	0.318	57.28	-3.626	6.21	-0.446	0.805	-2.108	MQ	C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.177T>G|ENSP00000359546.3:p.Phe59Leu|511/682|177/294|59/97|F/L|ttT/ttG|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.3)|benign(0.003)|	-1	0.0596689	0.0522111	4	0	14	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.342105,.,.	
-aff_only	fam_pl	C0011K2	chrX:140785739:A:C	1,.,.	7	0.318	22	-0.057	DB	424	9.0714	1.077	-0.4667	7	0.318	57.28	-3.626	6.21	-0.446	0.805	-2.108	MQ	C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.177T>G|ENSP00000359546.3:p.Phe59Leu|511/682|177/294|59/97|F/L|ttT/ttG|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.3)|benign(0.003)|	-1	0.0596689	0.0522111	4	0	14	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			47,.,.	0.212766,.,.	
-aff_only	fam_pl	C0011K3	chrX:140785739:A:C	1,.,.	7	0.318	22	-0.057	DB	424	9.0714	1.077	-0.4667	7	0.318	57.28	-3.626	6.21	-0.446	0.805	-2.108	MQ	C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.177T>G|ENSP00000359546.3:p.Phe59Leu|511/682|177/294|59/97|F/L|ttT/ttG|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.3)|benign(0.003)|	-1	0.0596689	0.0522111	4	0	14	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,.	0.5,.,.	
-aff_only	fam_pl	C0011KA	chrX:140785739:A:C	1,.,1	7	0.318	22	-0.057	DB	424	9.0714	1.077	-0.4667	7	0.318	57.28	-3.626	6.21	-0.446	0.805	-2.108	MQ	C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.177T>G|ENSP00000359546.3:p.Phe59Leu|511/682|177/294|59/97|F/L|ttT/ttG|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.3)|benign(0.003)|	-1	0.0596689	0.0522111	4	0	14	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,47	0.1,.,0.212766	
-aff_only	fam_pl	IP00FNP	chrX:140785739:A:C	1,.,1	7	0.318	22	-0.057	DB	424	9.0714	1.077	-0.4667	7	0.318	57.28	-3.626	6.21	-0.446	0.805	-2.108	MQ	C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.177T>G|ENSP00000359546.3:p.Phe59Leu|511/682|177/294|59/97|F/L|ttT/ttG|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.3)|benign(0.003)|	-1	0.0596689	0.0522111	4	0	14	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			72,.,38	0.111111,.,0.342105	
-aff_only	fam_pl	IP00FNW	chrX:140785739:A:C	1,.,.	7	0.318	22	-0.057	DB	424	9.0714	1.077	-0.4667	7	0.318	57.28	-3.626	6.21	-0.446	0.805	-2.108	MQ	C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.177T>G|ENSP00000359546.3:p.Phe59Leu|511/682|177/294|59/97|F/L|ttT/ttG|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.3)|benign(0.003)|	-1	0.0596689	0.0522111	4	0	14	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,.	0.176471,.,.	
-aff_only	fam_pl	IP00FNY	chrX:140785739:A:C	1,.,.	7	0.318	22	-0.057	DB	424	9.0714	1.077	-0.4667	7	0.318	57.28	-3.626	6.21	-0.446	0.805	-2.108	MQ	C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.177T>G|ENSP00000359546.3:p.Phe59Leu|511/682|177/294|59/97|F/L|ttT/ttG|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.3)|benign(0.003)|	-1	0.0596689	0.0522111	4	0	14	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.153846,.,.	
-aff_only	fam_pl	C0011JZ	chrX:140785741:A:C	1,.,.	7	0.318	22	-1.394	DB	422	9.0714	1.692	-0.4667	7	0.318	57.32	-3.694	6.25	-0.164	0.822	-2.102	MQRankSum	C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.175T>G|ENSP00000359546.3:p.Phe59Val|509/682|175/294|59/97|F/V|Ttt/Gtt|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.74)|benign(0)|	-1	0.103136	0.0958019	4	0	14	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			39,.,.	0.333333,.,.	
-aff_only	fam_pl	C0011K2	chrX:140785741:A:C	1,.,.	7	0.318	22	-1.394	DB	422	9.0714	1.692	-0.4667	7	0.318	57.32	-3.694	6.25	-0.164	0.822	-2.102	MQRankSum	C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.175T>G|ENSP00000359546.3:p.Phe59Val|509/682|175/294|59/97|F/V|Ttt/Gtt|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.74)|benign(0)|	-1	0.103136	0.0958019	4	0	14	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			48,.,.	0.208333,.,.	
-aff_only	fam_pl	C0011K3	chrX:140785741:A:C	1,.,.	7	0.318	22	-1.394	DB	422	9.0714	1.692	-0.4667	7	0.318	57.32	-3.694	6.25	-0.164	0.822	-2.102	MQRankSum	C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.175T>G|ENSP00000359546.3:p.Phe59Val|509/682|175/294|59/97|F/V|Ttt/Gtt|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.74)|benign(0)|	-1	0.103136	0.0958019	4	0	14	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			34,.,.	0.5,.,.	
-aff_only	fam_pl	C0011KA	chrX:140785741:A:C	1,.,1	7	0.318	22	-1.394	DB	422	9.0714	1.692	-0.4667	7	0.318	57.32	-3.694	6.25	-0.164	0.822	-2.102	MQRankSum	C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.175T>G|ENSP00000359546.3:p.Phe59Val|509/682|175/294|59/97|F/V|Ttt/Gtt|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.74)|benign(0)|	-1	0.103136	0.0958019	4	0	14	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,48	0.0980392,.,0.208333	
-aff_only	fam_pl	IP00FNP	chrX:140785741:A:C	1,.,1	7	0.318	22	-1.394	DB	422	9.0714	1.692	-0.4667	7	0.318	57.32	-3.694	6.25	-0.164	0.822	-2.102	MQRankSum	C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.175T>G|ENSP00000359546.3:p.Phe59Val|509/682|175/294|59/97|F/V|Ttt/Gtt|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.74)|benign(0)|	-1	0.103136	0.0958019	4	0	14	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			69,.,39	0.115942,.,0.333333	
-aff_only	fam_pl	IP00FNW	chrX:140785741:A:C	1,.,.	7	0.318	22	-1.394	DB	422	9.0714	1.692	-0.4667	7	0.318	57.32	-3.694	6.25	-0.164	0.822	-2.102	MQRankSum	C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.175T>G|ENSP00000359546.3:p.Phe59Val|509/682|175/294|59/97|F/V|Ttt/Gtt|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.74)|benign(0)|	-1	0.103136	0.0958019	4	0	14	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			33,.,.	0.181818,.,.	
-aff_only	fam_pl	IP00FNY	chrX:140785741:A:C	1,.,.	7	0.318	22	-1.394	DB	422	9.0714	1.692	-0.4667	7	0.318	57.32	-3.694	6.25	-0.164	0.822	-2.102	MQRankSum	C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.175T>G|ENSP00000359546.3:p.Phe59Val|509/682|175/294|59/97|F/V|Ttt/Gtt|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.74)|benign(0)|	-1	0.103136	0.0958019	4	0	14	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			38,.,.	0.157895,.,.	
-aff_only	fam_pl	C0011JZ	chrX:140785855:A:G	1,.,.	7	0.318	22	0.845	DB	435	9.0714	2.507	-0.4667	7	0.318	57.08	-0.85	8.93	0.412	0.555	-2.355	MQ	G|intron_variant|MODIFIER|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding||1/1|ENST00000370515.3:c.73-12T>C|||||||||-1||HGNC|14332|YES|CCDS14675.1|||	-1	0.155131	0.149268	2	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			45,.,.	0.377778,.,.	
-aff_only	fam_pl	C0011K2	chrX:140785855:A:G	1,.,.	7	0.318	22	0.845	DB	435	9.0714	2.507	-0.4667	7	0.318	57.08	-0.85	8.93	0.412	0.555	-2.355	MQ	G|intron_variant|MODIFIER|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding||1/1|ENST00000370515.3:c.73-12T>C|||||||||-1||HGNC|14332|YES|CCDS14675.1|||	-1	0.155131	0.149268	2	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			40,.,.	0.3,.,.	
-aff_only	fam_pl	C0011K3	chrX:140785855:A:G	1,.,.	7	0.318	22	0.845	DB	435	9.0714	2.507	-0.4667	7	0.318	57.08	-0.85	8.93	0.412	0.555	-2.355	MQ	G|intron_variant|MODIFIER|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding||1/1|ENST00000370515.3:c.73-12T>C|||||||||-1||HGNC|14332|YES|CCDS14675.1|||	-1	0.155131	0.149268	2	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			41,.,.	0.536585,.,.	
-aff_only	fam_pl	C0011KA	chrX:140785855:A:G	1,.,1	7	0.318	22	0.845	DB	435	9.0714	2.507	-0.4667	7	0.318	57.08	-0.85	8.93	0.412	0.555	-2.355	MQ	G|intron_variant|MODIFIER|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding||1/1|ENST00000370515.3:c.73-12T>C|||||||||-1||HGNC|14332|YES|CCDS14675.1|||	-1	0.155131	0.149268	2	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			46,.,40	0.23913,.,0.3	
-aff_only	fam_pl	IP00FNP	chrX:140785855:A:G	1,.,1	7	0.318	22	0.845	DB	435	9.0714	2.507	-0.4667	7	0.318	57.08	-0.85	8.93	0.412	0.555	-2.355	MQ	G|intron_variant|MODIFIER|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding||1/1|ENST00000370515.3:c.73-12T>C|||||||||-1||HGNC|14332|YES|CCDS14675.1|||	-1	0.155131	0.149268	2	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			53,.,45	0.245283,.,0.377778	
-aff_only	fam_pl	IP00FNW	chrX:140785855:A:G	1,.,.	7	0.318	22	0.845	DB	435	9.0714	2.507	-0.4667	7	0.318	57.08	-0.85	8.93	0.412	0.555	-2.355	MQ	G|intron_variant|MODIFIER|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding||1/1|ENST00000370515.3:c.73-12T>C|||||||||-1||HGNC|14332|YES|CCDS14675.1|||	-1	0.155131	0.149268	2	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			50,.,.	0.36,.,.	
-aff_only	fam_pl	IP00FNY	chrX:140785855:A:G	1,.,.	7	0.318	22	0.845	DB	435	9.0714	2.507	-0.4667	7	0.318	57.08	-0.85	8.93	0.412	0.555	-2.355	MQ	G|intron_variant|MODIFIER|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding||1/1|ENST00000370515.3:c.73-12T>C|||||||||-1||HGNC|14332|YES|CCDS14675.1|||	-1	0.155131	0.149268	2	1	47	C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY			51,.,.	0.411765,.,.	
diff --git a/example of results/PL_family_WGS_slivar_1664358140/res.vcf b/example of results/PL_family_WGS_slivar_1664358140/res.vcf
deleted file mode 100644
index 7c225db433cb400ddcdc0dd44aa086843b56e50a..0000000000000000000000000000000000000000
--- a/example of results/PL_family_WGS_slivar_1664358140/res.vcf	
+++ /dev/null
@@ -1,305 +0,0 @@
-##fileformat=VCFv4.2
-##FILTER=<ID=PASS,Description="All filters passed">
-##ALT=<ID=NON_REF,Description="Represents any possible alternative allele at this location">
-##FILTER=<ID=LowQual,Description="Low quality">
-##FILTER=<ID=VQSRTrancheINDEL99.00to99.90,Description="Truth sensitivity tranche level for INDEL model at VQS Lod: -4.5351 <= x < -0.4741">
-##FILTER=<ID=VQSRTrancheINDEL99.90to100.00+,Description="Truth sensitivity tranche level for INDEL model at VQS Lod < -20794.8907">
-##FILTER=<ID=VQSRTrancheINDEL99.90to100.00,Description="Truth sensitivity tranche level for INDEL model at VQS Lod: -20794.8907 <= x < -4.5351">
-##FILTER=<ID=VQSRTrancheSNP99.90to100.00+,Description="Truth sensitivity tranche level for SNP model at VQS Lod < -39178.8364">
-##FILTER=<ID=VQSRTrancheSNP99.90to100.00,Description="Truth sensitivity tranche level for SNP model at VQS Lod: -39178.8364 <= x < -2.9039">
-##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
-##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
-##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
-##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block">
-##FORMAT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another">
-##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
-##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
-##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phasing set (typically the position of the first variant in the set)">
-##FORMAT=<ID=RGQ,Number=1,Type=Integer,Description="Unconditional reference genotype confidence, encoded as a phred quality -10*log10 p(genotype call is wrong)">
-##FORMAT=<ID=SB,Number=4,Type=Integer,Description="Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias.">
-##GATKCommandLine.SelectVariants=<ID=SelectVariants,Version=3.7-0-gcfedb67,Date="Tue Aug 04 18:41:02 CEST 2020",Epoch=1596559262546,CommandLineOptions="analysis_type=SelectVariants input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=[/ccc/work/cont007/fg/fg/biobank/by-soft/varscope/hs37d5/WG_hs37d5_regions.target_split_bed/01.bed] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/dev/shm/hs37d5_all_chr.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=/ccc/scratch/cont007/fg0058/fg0058/projet_AUTISMEWG_592/ANALYSE/ANALYSE_A592_C0011JY_H72NKCCX2_1_hs37d5/VARIANT_C0011JY/C0011JY_hs37d5_BOTH_01.HC.temp.g.vcf) discordance=(RodBinding name= source=UNBOUND) concordance=(RodBinding name= source=UNBOUND) out=/ccc/scratch/cont007/fg0058/fg0058/projet_AUTISMEWG_592/ANALYSE/ANALYSE_A592_C0011JY_H72NKCCX2_1_hs37d5/VARIANT_C0011JY/C0011JY_hs37d5_BOTH_01.HC.g.vcf sample_name=[] sample_expressions=null sample_file=null exclude_sample_name=[] exclude_sample_file=[] exclude_sample_expressions=[] selectexpressions=[] invertselect=false excludeNonVariants=false excludeFiltered=false preserveAlleles=false removeUnusedAlternates=false restrictAllelesTo=ALL keepOriginalAC=false keepOriginalDP=false mendelianViolation=false invertMendelianViolation=false mendelianViolationQualThreshold=0.0 select_random_fraction=0.0 remove_fraction_genotypes=0.0 selectTypeToInclude=[] selectTypeToExclude=[] keepIDs=null excludeIDs=null fullyDecode=false justRead=false maxIndelSize=2147483647 minIndelSize=0 maxFilteredGenotypes=2147483647 minFilteredGenotypes=0 maxFractionFilteredGenotypes=1.0 minFractionFilteredGenotypes=0.0 maxNOCALLnumber=2147483647 maxNOCALLfraction=1.0 setFilteredGtToNocall=false ALLOW_NONOVERLAPPING_COMMAND_LINE_SAMPLES=false forceValidOutput=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
-##GATKCommandLine=<ID=ApplyVQSR,CommandLine="ApplyVQSR --recal-file /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-indel-vqsr.recal --tranches-file /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-indel-vqsr.tranches --output /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-vqsr.vcf.gz --truth-sensitivity-filter-level 99.0 --mode INDEL --variant /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-snp-vqsr.vcf.gz --reference references/GRCh37/chr/hs37d5.fa --use-allele-specific-annotations false --ignore-all-filters false --exclude-filtered false --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays  --disable-tool-default-read-filters false",Version="4.1.8.1",Date="September 16, 2021 12:50:15 PM CEST">
-##GATKCommandLine=<ID=ApplyVQSR,CommandLine="ApplyVQSR --recal-file /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-snp-vqsr.recal --tranches-file /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-snp-vqsr.tranches --output /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-snp-vqsr.vcf.gz --truth-sensitivity-filter-level 99.5 --mode SNP --variant /pasteur/sonic/scratch/users/fcliquet/vcf/Dyslexia.gatk-no-vqsr.vcf.gz --reference references/GRCh37/chr/hs37d5.fa --use-allele-specific-annotations false --ignore-all-filters false --exclude-filtered false --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays  --disable-tool-default-read-filters false",Version="4.1.8.1",Date="September 16, 2021 12:31:29 PM CEST">
-##GATKCommandLine=<ID=GenomicsDBImport,CommandLine="GenomicsDBImport --genomicsdb-workspace-path /local/scratch/tmp/38734053_1//Dyslexia.chr1.1-1000000 --overwrite-existing-genomicsdb-workspace true --batch-size 50 --consolidate true --sample-name-map /local/scratch/tmp/38734053_1/sample.map --reader-threads 1 --intervals chr1:1-1000000 --interval-padding 500 --tmp-dir /local/scratch/tmp/38734053_1//tmp/ --genomicsdb-segment-size 1048576 --genomicsdb-vcf-buffer-size 16384 --validate-sample-name-map false --merge-input-intervals false --max-num-intervals-to-import-in-parallel 1 --genomicsdb-shared-posixfs-optimizations false --interval-set-rule UNION --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 0 --cloud-index-prefetch-buffer 0 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays  --disable-tool-default-read-filters false",Version="4.1.8.1",Date="September 15, 2021 3:11:49 PM CEST">
-##GATKCommandLine=<ID=GenotypeGVCFs,CommandLine="GenotypeGVCFs --output /local/scratch/tmp/38743216_1/Dyslexia.chr1.1-1000000.genotyped.vcf.gz --only-output-calls-starting-in-intervals true --dbsnp /pasteur/zeus/projets/p02/ghfc_wgs_zeus/tools/ngs-workflow/references/GRCh37/chr/gatk-bundle/dbsnp_138.hg19.vcf.gz --variant gendb:///local/scratch/tmp/38743216_1//Dyslexia.chr1.1-1000000 --intervals chr1:1-1000000 --reference references/GRCh37/chr/hs37d5.fa --annotation-group StandardAnnotation --include-non-variant-sites false --merge-input-intervals false --input-is-somatic false --tumor-lod-to-emit 3.5 --allele-fraction-error 0.001 --keep-combined-raw-annotations false --annotate-with-num-discovered-alleles false --heterozygosity 0.001 --indel-heterozygosity 1.25E-4 --heterozygosity-stdev 0.01 --standard-min-confidence-threshold-for-calling 30.0 --max-alternate-alleles 6 --max-genotype-count 1024 --sample-ploidy 2 --num-reference-samples-if-no-call 0 --genomicsdb-use-bcf-codec false --genomicsdb-shared-posixfs-optimizations false --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays  --disable-tool-default-read-filters false --disable-tool-default-annotations false --enable-all-annotations false --allow-old-rms-mapping-quality-annotation-data false",Version="4.1.8.1",Date="September 15, 2021 3:30:43 PM CEST">
-##GATKCommandLine=<ID=HaplotypeCaller,CommandLine="HaplotypeCaller  --emit-ref-confidence GVCF --standard-min-confidence-threshold-for-calling 10.0 --output /ccc/scratch/cont007/fg0058/fg0058/projet_AUTISMEWG_592/ANALYSE/ANALYSE_A592_C0011JY_H72NKCCX2_1_hs37d5/VARIANT_C0011JY/C0011JY_hs37d5_BOTH_01.HC.temp.g.vcf --intervals /ccc/work/cont007/fg/fg/biobank/by-soft/varscope/hs37d5/WG_hs37d5_regions.target_split_bed/01_overlap.bed --input /ccc/scratch/cont007/fg0058/fg0058/projet_AUTISMEWG_592/ANALYSE/ANALYSE_A592_C0011JY_H72NKCCX2_1_hs37d5/MAPPING_C0011JY/reliable.realign.recal/A592_DA_C0011JY_H72NKCCX2_hs37d5_MERGE_PE_1_01.reliable.realign.recal.bam --reference /dev/shm/hs37d5_all_chr.fasta  --gvcf-gq-bands 1 --gvcf-gq-bands 2 --gvcf-gq-bands 3 --gvcf-gq-bands 4 --gvcf-gq-bands 5 --gvcf-gq-bands 6 --gvcf-gq-bands 7 --gvcf-gq-bands 8 --gvcf-gq-bands 9 --gvcf-gq-bands 10 --gvcf-gq-bands 11 --gvcf-gq-bands 12 --gvcf-gq-bands 13 --gvcf-gq-bands 14 --gvcf-gq-bands 15 --gvcf-gq-bands 16 --gvcf-gq-bands 17 --gvcf-gq-bands 18 --gvcf-gq-bands 19 --gvcf-gq-bands 20 --gvcf-gq-bands 21 --gvcf-gq-bands 22 --gvcf-gq-bands 23 --gvcf-gq-bands 24 --gvcf-gq-bands 25 --gvcf-gq-bands 26 --gvcf-gq-bands 27 --gvcf-gq-bands 28 --gvcf-gq-bands 29 --gvcf-gq-bands 30 --gvcf-gq-bands 31 --gvcf-gq-bands 32 --gvcf-gq-bands 33 --gvcf-gq-bands 34 --gvcf-gq-bands 35 --gvcf-gq-bands 36 --gvcf-gq-bands 37 --gvcf-gq-bands 38 --gvcf-gq-bands 39 --gvcf-gq-bands 40 --gvcf-gq-bands 41 --gvcf-gq-bands 42 --gvcf-gq-bands 43 --gvcf-gq-bands 44 --gvcf-gq-bands 45 --gvcf-gq-bands 46 --gvcf-gq-bands 47 --gvcf-gq-bands 48 --gvcf-gq-bands 49 --gvcf-gq-bands 50 --gvcf-gq-bands 51 --gvcf-gq-bands 52 --gvcf-gq-bands 53 --gvcf-gq-bands 54 --gvcf-gq-bands 55 --gvcf-gq-bands 56 --gvcf-gq-bands 57 --gvcf-gq-bands 58 --gvcf-gq-bands 59 --gvcf-gq-bands 60 --gvcf-gq-bands 70 --gvcf-gq-bands 80 --gvcf-gq-bands 90 --gvcf-gq-bands 99 --indel-size-to-eliminate-in-ref-model 10 --use-alleles-trigger false --disable-optimizations false --just-determine-active-regions false --dont-genotype false --max-mnp-distance 0 --dont-trim-active-regions false --max-disc-ar-extension 25 --max-gga-ar-extension 300 --padding-around-indels 150 --padding-around-snps 20 --adaptive-pruning false --do-not-recover-dangling-branches false --recover-dangling-heads false --consensus false --kmer-size 10 --kmer-size 25 --dont-increase-kmer-sizes-for-cycles false --allow-non-unique-kmers-in-ref false --num-pruning-samples 1 --min-dangling-branch-length 4 --max-num-haplotypes-in-population 128 --min-pruning 2 --adaptive-pruning-initial-error-rate 0.001 --pruning-lod-threshold 1.0 --max-unpruned-variants 100 --debug-graph-transformations false --kmer-length-for-read-error-correction 25 --min-observations-for-kmer-to-be-solid 20 --likelihood-calculation-engine PairHMM --base-quality-score-threshold 18 --pair-hmm-gap-continuation-penalty 10 --pair-hmm-implementation FASTEST_AVAILABLE --pcr-indel-model CONSERVATIVE --phred-scaled-global-read-mismapping-rate 45 --native-pair-hmm-threads 4 --native-pair-hmm-use-double-precision false --debug false --use-filtered-reads-for-annotations false --bam-writer-type CALLED_HAPLOTYPES --dont-use-soft-clipped-bases false --capture-assembly-failure-bam false --error-correct-reads false --do-not-run-physical-phasing false --min-base-quality-score 10 --smith-waterman JAVA --correct-overlapping-quality false --use-new-qual-calculator true --use-old-qual-calculator false --annotate-with-num-discovered-alleles false --heterozygosity 0.001 --indel-heterozygosity 1.25E-4 --heterozygosity-stdev 0.01 --max-alternate-alleles 6 --max-genotype-count 1024 --sample-ploidy 2 --num-reference-samples-if-no-call 0 --genotyping-mode DISCOVERY --genotype-filtered-alleles false --contamination-fraction-to-filter 0.0 --output-mode EMIT_VARIANTS_ONLY --all-site-pls false --min-assembly-region-size 50 --max-assembly-region-size 300 --assembly-region-padding 100 --max-reads-per-alignment-start 50 --active-probability-threshold 0.002 --max-prob-propagation-distance 50 --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays  --disable-tool-default-read-filters false --minimum-mapping-quality 20 --disable-tool-default-annotations false --enable-all-annotations false",Version=4.1.0.0,Date="August 4, 2020 4:14:40 PM CEST">
-##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
-##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
-##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
-##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
-##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
-##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
-##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
-##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
-##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
-##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
-##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
-##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
-##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
-##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
-##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
-##INFO=<ID=NEGATIVE_TRAIN_SITE,Number=0,Type=Flag,Description="This variant was used to build the negative training set of bad variants">
-##INFO=<ID=POSITIVE_TRAIN_SITE,Number=0,Type=Flag,Description="This variant was used to build the positive training set of good variants">
-##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
-##INFO=<ID=RAW_MQandDP,Number=2,Type=Integer,Description="Raw data (sum of squared MQ and total depth) for improved RMS Mapping Quality calculation. Incompatible with deprecated RAW_MQ formulation.">
-##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
-##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
-##INFO=<ID=VQSLOD,Number=1,Type=Float,Description="Log odds of being a true variant versus being false under the trained gaussian mixture model">
-##INFO=<ID=culprit,Number=1,Type=String,Description="The annotation which was the worst performing in the Gaussian mixture model, likely the reason why the variant was filtered out">
-##bcftools_normCommand=norm -m - -w 10000 -f references/GRCh37/chr/hs37d5.fa; Date=Wed Sep 15 15:31:06 2021
-##bcftools_normVersion=1.12+htslib-1.12
-##contig=<ID=chr1,length=249250621>
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-##contig=<ID=NC_007605,length=171823>
-##contig=<ID=hs37d5,length=35477943>
-##reference=file:///dev/shm/hs37d5_all_chr.fasta
-##source=ApplyVQSR
-##source=GenomicsDBImport
-##source=GenotypeGVCFs
-##source=HaplotypeCaller
-##source=SelectVariants
-##bcftools_normCommand=norm -m - -w 1000 -c s -f references/GRCh37/chr/hs37d5.fa --threads 3 -Oz -o /pasteur/zeus/projets/p02/ghfc_wgs_zeus/WGS/Dyslexia/vcf/splitted/Dyslexia.gatk-vqsr.splitted.chr1.1-10000000.norm.vcf.gz; Date=Thu Sep 16 12:54:23 2021
-##VEP="v104" time="2021-09-16 12:54:40" cache="tools/ensembl-vep-104.3/data/homo_sapiens/104_GRCh37" ensembl-variation=104.20f5335 ensembl-funcgen=104.f1c7762 ensembl=104.1af1dce ensembl-io=104.1d3bb6e 1000genomes="phase3" COSMIC="92" ClinVar="202012" HGMD-PUBLIC="20204" assembly="GRCh37.p13" dbSNP="154" gencode="GENCODE 19" genebuild="2011-04" gnomAD="r2.1" polyphen="2.2.2" regbuild="1.0" sift="sift5.2.2"
-##INFO=<ID=CSQ,Number=.,Type=String,Description="Consequence annotations from Ensembl VEP. Format: Allele|Consequence|IMPACT|SYMBOL|Gene|Feature_type|Feature|BIOTYPE|EXON|INTRON|HGVSc|HGVSp|cDNA_position|CDS_position|Protein_position|Amino_acids|Codons|Existing_variation|DISTANCE|STRAND|FLAGS|SYMBOL_SOURCE|HGNC_ID|CANONICAL|CCDS|SIFT|PolyPhen|HGVS_OFFSET">
-##INFO=<ID=cadd_phred,Number=1,Type=Float,Description="field from from gnotate VCF">
-##INFO=<ID=cadd_phred_filter,Number=0,Type=Flag,Description="non-passing flag in gnotate source VCF">
-##INFO=<ID=gno_non_neuro_af_all,Number=1,Type=Float,Description="field from from gnotate VCF">
-##INFO=<ID=gno_non_neuro_af_all_filter,Number=0,Type=Flag,Description="non-passing flag in gnotate source VCF">
-##INFO=<ID=gno_non_neuro_af_nfe,Number=1,Type=Float,Description="field from from gnotate VCF">
-##INFO=<ID=gno_non_neuro_af_nfe_filter,Number=0,Type=Flag,Description="non-passing flag in gnotate source VCF">
-##INFO=<ID=gno_non_neuro_nhomalt_all,Number=1,Type=Float,Description="field from from gnotate VCF">
-##INFO=<ID=gno_non_neuro_nhomalt_all_filter,Number=0,Type=Flag,Description="non-passing flag in gnotate source VCF">
-##INFO=<ID=gno_non_neuro_nhomalt_nfe,Number=1,Type=Float,Description="field from from gnotate VCF">
-##INFO=<ID=gno_non_neuro_nhomalt_nfe_filter,Number=0,Type=Flag,Description="non-passing flag in gnotate source VCF">
-##INFO=<ID=aff_only,Number=.,Type=String,Description="added by slivar with expression: 'fam.every(find_het_aff_hom_ref_unaff)' from Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz">
-##INFO=<ID=impactful,Number=0,Type=Flag,Description="variant is impactful according to slivar and impacts added by VEP/snpEff/bcftools (https://github.com/brentp/slivar/wiki/impactful)">
-##INFO=<ID=genic,Number=0,Type=Flag,Description="variant is genic according to slivar and impacts added by VEP/snpEff/bcftools (https://github.com/brentp/slivar/wiki/impactful)">
-##INFO=<ID=highest_impact_order,Number=1,Type=Integer,Description="impact order (lower is higher) of this variant across all genes and transcripts it overlaps. this integer can be used as a look into the order list to get the actual impact">
-#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	C0011JY	C0011JZ	C0011K1	C0011K2	C0011K3	C0011K5	C0011KA	C0011KB	IP00FNP	IP00FNW	IP00FNY
-chr1	142674001	rs138979035	C	T	2248.45	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=0.31;DB;DP=1223;ExcessHet=9.0714;FS=8.045;InbreedingCoeff=-0.467;MLEAC=7;MLEAF=0.318;MQ=42.32;MQRankSum=-2.342;QD=2.86;ReadPosRankSum=0.256;SOR=1.492;VQSLOD=-4.51;culprit=MQ;CSQ=T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000369381|lincRNA||6/8|ENST00000369381.2:n.2507+18961G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000400755|lincRNA||4/4|ENST00000400755.3:n.245+3394C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000411746|lincRNA||2/3|ENST00000411746.1:n.517-50178C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.3|ENSG00000230880|Transcript|ENST00000446205|lincRNA||4/5|ENST00000446205.2:n.401-16863C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-417J8.6|ENSG00000203849|Transcript|ENST00000610091|lincRNA||11/13|ENST00000610091.1:n.3560+18961G>A|||||||||-1||Clone_based_vega_gene||YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.303041;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.339451;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:128,0:128:22:.:.:0,22,3605:.	0/1:86,15:101:99:.:.:276,0,2582:.	0/0:87,0:87:99:.:.:0,120,1800:.	0/1:93,9:102:25:.:.:25,0,2854:.	0|1:77,8:85:63:0|1:142673986_C_A:63,0,3145:142673986	0/0:93,0:93:99:.:.:0,120,1800:.	0/1:102,26:128:99:.:.:571,0,2973:.	0/0:113,9:122:35:.:.:0,35,3384:.	0/1:114,43:157:99:.:.:921,0,3356:.	0/1:52,9:61:99:.:.:111,0,1480:.	0/1:135,18:153:99:.:.:299,0,3793:.
-chr1	146487361	.	ACC	*	230.29	VQSRTrancheINDEL99.00to99.90	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.103;DP=397;ExcessHet=20.6;FS=13.198;InbreedingCoeff=-0.8858;MLEAC=7;MLEAF=0.318;MQ=29.75;MQRankSum=1.31;QD=0.69;ReadPosRankSum=1.64;SOR=1.251;VQSLOD=-1.591;culprit=MQ;cadd_phred=-1;gno_non_neuro_af_all=-1;gno_non_neuro_af_nfe=-1;gno_non_neuro_nhomalt_all=-1;gno_non_neuro_nhomalt_nfe=-1;highest_impact_order=2147483646;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:38,2:42:3:.:.:0,3,2172:.	0/1:10,8:24:99:.:.:397,0,378:.	0/0:15,4:28:99:.:.:370,109,701:.	0|1:33,6:39:99:0|1:146487360_AACC_A:153,0,1394:146487360	0|1:34,3:37:66:0|1:146487360_AACC_A:66,0,1598:146487360	0/0:11,5:22:12:.:.:322,12,438:.	0/1:23,4:30:50:.:.:228,0,939:.	0/0:10,4:22:99:.:.:423,121,502:.	0/1:18,13:43:25:.:.:649,0,705:.	0/1:12,12:27:99:.:.:509,0,438:.	0|1:43,20:63:99:0|1:146487360_AACC_A:710,0,1681:146487360
-chr2	53605544	rs141200257;rs60803496	T	TTTTTA	6326.38	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.754;DB;DP=504;ExcessHet=9.0714;FS=6.984;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60.09;MQRankSum=0;QD=21.37;ReadPosRankSum=-0.352;SOR=0.727;VQSLOD=8.51;culprit=MQRankSum;CSQ=TTTTA|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.453228;gno_non_neuro_af_nfe=0.357854;gno_non_neuro_nhomalt_all=2369;gno_non_neuro_nhomalt_nfe=819;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,101,1281	0/1:10,11:21:99:429,0,566	0/0:38,0:38:99:0,100,1272	0/1:15,16:31:99:626,0,851	0/1:21,17:38:99:690,0,1186	0/0:38,0:38:99:0,99,1217	0/1:15,18:33:99:743,0,826	0/0:42,0:42:99:0,107,1410	0/1:22,33:55:99:1419,0,1196	0/1:20,25:45:99:1008,0,1073	0/1:37,36:73:99:1429,0,2048
-chr2	53606631	rs1402903	C	T	5457.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=1.23;DB;DP=519;ExcessHet=9.0714;FS=0;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=0.429;SOR=0.7;VQSLOD=23.52;culprit=MQRankSum;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.454644;gno_non_neuro_af_nfe=0.358489;gno_non_neuro_nhomalt_all=2456;gno_non_neuro_nhomalt_nfe=857;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,99,1321	0/1:27,24:51:99:661,0,735	0/0:35,0:35:99:0,99,1166	0/1:16,22:38:99:651,0,432	0/1:24,28:52:99:777,0,638	0/0:35,0:35:99:0,99,1370	0/1:19,17:36:99:483,0,542	0/0:42,0:42:99:0,99,1399	0/1:31,30:61:99:859,0,754	0/1:32,30:62:99:857,0,711	0/1:30,41:71:99:1187,0,719
-chr2	53611448	rs11125488	T	A	5175.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=484;ExcessHet=9.0714;FS=0.388;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=-0.338;SOR=0.726;VQSLOD=23.79;culprit=MQRankSum;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.457699;gno_non_neuro_af_nfe=0.358439;gno_non_neuro_nhomalt_all=2490;gno_non_neuro_nhomalt_nfe=851;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,99,1176	0/1:17,17:34:99:429,0,486	0/0:38,0:38:99:0,102,1205	0/1:17,27:44:99:766,0,428	0/1:18,29:47:99:857,0,461	0/0:34,0:34:99:0,99,1176	0/1:15,19:34:99:546,0,386	0/0:28,0:28:84:0,84,963	0/1:36,28:64:99:778,0,1059	0/1:32,26:58:99:712,0,928	0/1:29,38:67:99:1105,0,807
-chr2	55855379	rs11298008	CA	C	609.37	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.566;DB;DP=226;ExcessHet=5.8108;FS=6.666;InbreedingCoeff=-0.3786;MLEAC=6;MLEAF=0.273;MQ=59.92;MQRankSum=0;QD=7.71;ReadPosRankSum=0.366;SOR=1.483;VQSLOD=5.55;culprit=MQRankSum;CSQ=-|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.581573;gno_non_neuro_af_nfe=0.577764;gno_non_neuro_nhomalt_all=1048;gno_non_neuro_nhomalt_nfe=734;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:27,0:27:0:.:.:0,0,469:.	0/1:3,6:9:34:.:.:95,0,34:.	0/0:38,0:38:0:.:.:0,0,655:.	1/0:1,6:9:13:.:.:109,13,20:.	0/1:5,7:12:65:.:.:106,0,65:.	0/0:4,0:7:19:.:.:19,39,173:.	0|1:4,10:14:47:0|1:55855379_CA_C:140,0,47:55855379	0/0:5,0:12:64:.:.:104,118,250:.	0/1:3,1:5:3:.:.:3,0,78:.	1/0:1,4:6:3:.:.:42,3,33:.	0/1:4,3:7:10:.:.:10,0,71:.
-chr2	61475320	rs11339335;rs375683015	CA	C	668.17	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=252;ExcessHet=4.3978;FS=0;InbreedingCoeff=-0.2173;MLEAC=7;MLEAF=0.318;MQ=57.71;MQRankSum=0;QD=9.68;ReadPosRankSum=0.199;SOR=0.618;VQSLOD=1.8;culprit=MQRankSum;CSQ=-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000398571|protein_coding||49/79|ENST00000398571.2:c.6394+325del|||||||||-1||HGNC|20066|YES|CCDS42686.1|||,-|intron_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000453734|protein_coding||11/23|ENST00000453734.1:c.1228+325del|||||||||-1|cds_start_NF|HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000463046|retained_intron||3/27|ENST00000463046.1:n.282+325del|||||||||-1||HGNC|20066|||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|USP34|ENSG00000115464|Transcript|ENST00000472706|processed_transcript||2/4|ENST00000472706.1:n.209-26580del|||||||||-1||HGNC|20066|||||,-|upstream_gene_variant|MODIFIER|RP11-479F13.1|ENSG00000271146|Transcript|ENST00000605372|processed_pseudogene|||||||||||1594|1||Clone_based_vega_gene||YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.357445;gno_non_neuro_af_nfe=0.346886;gno_non_neuro_nhomalt_all=139;gno_non_neuro_nhomalt_nfe=80;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:17,0:19:50:0,50,332	0/1:5,6:13:83:83,0,95	0/0:9,0:10:26:0,26,169	0/1:8,9:17:99:123,0,111	0/1:5,6:12:86:87,0,86	0/0:16,0:16:48:0,48,461	1/0:1,6:15:99:303,221,297	0/0:10,0:11:3:0,30,280	0/1:4,4:8:45:48,0,45	0/1:4,3:7:41:41,0,60	0/1:4,1:6:13:13,0,57
-chr2	65103319	rs7589210	T	C	3429.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.267;DB;DP=396;ExcessHet=9.0714;FS=6.104;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-0.821;SOR=0.842;VQSLOD=24;culprit=MQRankSum;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=14.1;gno_non_neuro_af_all=0.556663;gno_non_neuro_af_nfe=0.484578;gno_non_neuro_nhomalt_all=3367;gno_non_neuro_nhomalt_nfe=1561;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:42,0:42:91:0,91,1332	0/1:14,10:24:99:275,0,394	0/0:34,0:34:71:0,71,1074	0/1:20,11:31:99:289,0,572	0/1:15,21:36:99:597,0,414	0/0:36,0:36:99:0,100,1221	0/1:15,13:28:99:368,0,427	0/0:43,0:43:70:0,70,1295	0/1:13,23:36:99:636,0,344	0/1:16,22:38:99:641,0,432	0/1:21,25:46:99:641,0,583
-chr2	65103814	rs6546107	A	G	3347.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-1.192;DB;DP=449;ExcessHet=9.0714;FS=3.177;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=-0.024;SOR=0.534;VQSLOD=23.48;culprit=MQRankSum;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.506841;gno_non_neuro_af_nfe=0.473258;gno_non_neuro_nhomalt_all=2723;gno_non_neuro_nhomalt_nfe=1490;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,99,1371	0/1:19,12:31:99:299,0,568	0/0:33,0:33:90:0,90,1138	0/1:17,12:29:99:310,0,484	0/1:24,20:44:99:538,0,662	0/0:35,0:35:99:0,102,1530	0/1:10,13:23:99:363,0,258	0/0:44,0:44:99:0,103,1410	0/1:37,25:62:99:582,0,1090	0/1:26,26:52:99:647,0,713	0/1:33,26:59:99:626,0,960
-chr2	65103931	rs10639084	G	GTTT	4502.38	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.179;DB;DP=397;ExcessHet=9.0714;FS=2.238;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;QD=19.41;ReadPosRankSum=-0.356;SOR=0.871;VQSLOD=8.92;culprit=MQRankSum;CSQ=TTT|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.509393;gno_non_neuro_af_nfe=0.46758;gno_non_neuro_nhomalt_all=2515;gno_non_neuro_nhomalt_nfe=1338;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:22,0:22:60:0,60,900	0/1:8,10:18:99:371,0,325	0/0:35,0:35:99:0,99,1485	0/1:24,12:36:99:429,0,1023	0/1:18,15:33:99:561,0,743	0/0:33,0:33:99:0,99,1066	0/1:7,16:23:99:643,0,265	0/0:41,0:41:99:0,108,1370	0/1:15,20:35:99:759,0,584	0/1:18,24:42:99:962,0,685	0/1:24,21:45:99:795,0,933
-chr2	65103983	rs6546108	G	A	3164.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.904;DB;DP=381;ExcessHet=9.0714;FS=7.072;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-0.244;SOR=0.843;VQSLOD=24.28;culprit=MQRankSum;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.504025;gno_non_neuro_af_nfe=0.469158;gno_non_neuro_nhomalt_all=2647;gno_non_neuro_nhomalt_nfe=1431;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:33,0:33:75:0,75,1078	0/1:10,13:23:99:383,0,278	0/0:28,0:28:81:0,81,933	0/1:26,13:39:99:315,0,752	0/1:15,16:31:99:453,0,428	0/0:38,0:38:99:0,108,1620	0/1:8,18:26:99:502,0,200	0/0:41,0:41:99:0,108,1370	0/1:21,19:40:99:494,0,600	0/1:14,21:35:99:589,0,382	0/1:28,17:45:99:446,0,782
-chr2	65104485	rs10200233	A	G	4388.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-1.493;DB;DP=473;ExcessHet=9.0714;FS=0;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0;SOR=0.705;VQSLOD=23.5;culprit=MQRankSum;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.52367;gno_non_neuro_af_nfe=0.475941;gno_non_neuro_nhomalt_all=2933;gno_non_neuro_nhomalt_nfe=1508;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,104,1575	0/1:17,23:40:99:669,0,451	0/0:42,0:42:92:0,92,1391	0/1:16,26:42:99:737,0,365	0/1:21,25:46:99:681,0,581	0/0:34,0:34:99:0,99,1162	0/1:25,12:37:99:271,0,708	0/0:36,0:36:99:0,99,1160	0/1:25,28:53:99:673,0,700	0/1:23,20:43:99:460,0,671	0/1:21,37:58:99:915,0,556
-chr2	65106350	rs918197	C	T	4206.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.16;DB;DP=462;ExcessHet=9.0714;FS=0.869;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-0.173;SOR=0.697;VQSLOD=23.74;culprit=MQRankSum;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.527461;gno_non_neuro_af_nfe=0.475917;gno_non_neuro_nhomalt_all=2999;gno_non_neuro_nhomalt_nfe=1513;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,120,1800	0/1:15,22:37:99:613,0,380	0/0:36,0:36:99:0,99,1252	0/1:16,14:30:99:386,0,462	0/1:24,22:46:99:596,0,695	0/0:40,0:40:99:0,100,1275	0/1:19,15:34:99:409,0,548	0/0:35,0:35:99:0,99,1177	0/1:24,32:56:99:944,0,524	0/1:25,14:39:99:370,0,636	0/1:30,32:62:99:906,0,745
-chr2	65106492	rs918196	A	G	3868.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.85;DB;DP=446;ExcessHet=9.0714;FS=3.167;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.09;SOR=0.883;VQSLOD=23.77;culprit=MQRankSum;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.528879;gno_non_neuro_af_nfe=0.47651;gno_non_neuro_nhomalt_all=3011;gno_non_neuro_nhomalt_nfe=1513;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,120,1800	0/1:18,12:30:99:326,0,532	0/0:36,0:36:99:0,99,1252	0/1:19,12:31:99:313,0,546	0/1:24,16:40:99:411,0,715	0/0:42,0:42:99:0,100,1395	0/1:16,17:33:99:462,0,457	0/0:30,0:30:81:0,81,1215	0/1:20,25:45:99:709,0,560	0/1:25,29:54:99:834,0,707	0/1:30,29:59:99:831,0,843
-chr2	65106712	rs11396721	T	TG	3606.38	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.845;DB;DP=422;ExcessHet=9.0714;FS=8.562;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60.04;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-0.241;SOR=1.136;VQSLOD=8.78;culprit=MQRankSum;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.552132;gno_non_neuro_af_nfe=0.482733;gno_non_neuro_nhomalt_all=3298;gno_non_neuro_nhomalt_nfe=1553;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,102,1332	0/1:16,14:30:99:382,0,416	0/0:33,0:33:99:0,99,1107	0/1:15,14:29:99:358,0,390	0/1:21,22:43:99:562,0,538	0/0:37,0:37:99:0,99,1210	0/1:17,23:40:99:609,0,419	0/0:34,0:34:99:0,99,1201	0/1:26,23:49:99:583,0,679	0/1:15,17:32:99:471,0,367	0/1:20,25:45:99:659,0,500
-chr2	65107942	rs6720589	G	A	4067.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=1.59;DB;DP=447;ExcessHet=9.0714;FS=3.057;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.115;SOR=0.764;VQSLOD=23.72;culprit=MQRankSum;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.493539;gno_non_neuro_af_nfe=0.469991;gno_non_neuro_nhomalt_all=2570;gno_non_neuro_nhomalt_nfe=1474;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,99,1172	0/1:11,9:20:99:253,0,302	0/0:37,0:37:99:0,99,1340	0/1:22,25:47:99:708,0,613	0/1:24,19:43:99:531,0,685	0/0:31,0:31:93:0,93,1047	0/1:18,22:40:99:624,0,440	0/0:38,0:38:99:0,99,1272	0/1:26,24:50:99:664,0,593	0/1:22,11:33:99:283,0,581	0/1:37,36:73:99:1022,0,926
-chr2	65108615	rs6739118	T	C	4243.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-1.861;DB;DP=479;ExcessHet=9.0714;FS=8.259;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=0.189;SOR=0.421;VQSLOD=23.99;culprit=MQRankSum;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.523677;gno_non_neuro_af_nfe=0.476583;gno_non_neuro_nhomalt_all=2941;gno_non_neuro_nhomalt_nfe=1515;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,99,1071	0/1:13,18:31:99:532,0,339	0/0:37,0:37:99:0,99,1201	0/1:30,21:51:99:567,0,870	0/1:16,16:32:99:450,0,460	0/0:39,0:39:99:0,99,1485	0/1:18,15:33:99:372,0,502	0/0:35,0:35:99:0,100,1196	0/1:25,22:47:99:513,0,728	0/1:30,33:63:99:773,0,844	0/1:33,42:75:99:1054,0,922
-chr2	65109039	rs1995829	A	G	3936.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.843;DB;DP=473;ExcessHet=9.0714;FS=2.363;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=59.96;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=12;ReadPosRankSum=0.182;SOR=0.638;VQSLOD=8.81;culprit=MQRankSum;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.523857;gno_non_neuro_af_nfe=0.4766;gno_non_neuro_nhomalt_all=2945;gno_non_neuro_nhomalt_nfe=1516;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1077	0/1:23,22:45:99:629,0,664	0/0:37,0:37:99:0,99,1201	0/1:30,14:44:99:344,0,900	0/1:14,17:31:99:488,0,392	0/0:39,0:39:99:0,101,1332	0/1:15,21:36:99:622,0,388	0/0:33,0:33:93:0,93,1395	0/1:31,20:51:99:451,0,904	0/1:26,25:51:99:550,0,741	0/1:34,36:70:99:870,0,971
-chr2	65388081	rs200658875	TA	T	3087.91	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.396;DB;DP=291;ExcessHet=9.0714;FS=15.397;InbreedingCoeff=-0.6923;MLEAC=9;MLEAF=0.409;MQ=59.33;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=19.79;ReadPosRankSum=0.534;SOR=1.689;VQSLOD=6.12;culprit=MQRankSum;CSQ=-|downstream_gene_variant|MODIFIER|SNORA74|ENSG00000272025|Transcript|ENST00000607595|snoRNA|||||||||||2088|1||RFAM||YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.505715;gno_non_neuro_af_nfe=0.526476;gno_non_neuro_nhomalt_all=2246;gno_non_neuro_nhomalt_nfe=1563;highest_impact_order=53;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:21,0:21:0:.:.:0,0,485:.	0|1:7,13:20:99:0|1:65388073_T_A:525,0,552:65388073	0/0:44,0:44:0:.:.:0,0,798:.	0|1:12,9:21:99:0|1:65388073_T_A:311,0,589:65388073	0|1:13,15:28:99:0|1:65388073_T_A:588,0,695:65388073	0/0:30,0:30:0:.:.:0,0,449:.	0|1:4,9:13:99:0|1:65388073_T_A:366,0,147:65388073	0/0:30,0:30:0:.:.:0,0,450:.	0/1:14,14:28:99:.:.:336,0,323:.	0/1:7,10:17:99:.:.:249,0,146:.	0|1:12,17:29:99:0|1:65388073_T_A:712,0,677:65388073
-chr2	65525953	rs34148687	A	ATT	2704.68	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.095;DB;DP=280;ExcessHet=4.4261;FS=1.965;InbreedingCoeff=-0.2222;MLEAC=7;MLEAF=0.318;MQ=56.39;MQRankSum=0;QD=15.91;ReadPosRankSum=-0.183;SOR=1.019;VQSLOD=-0.3518;culprit=MQRankSum;CSQ=TT|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.251169;gno_non_neuro_af_nfe=0.27406;gno_non_neuro_nhomalt_all=427;gno_non_neuro_nhomalt_nfe=318;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:12,0:22:99:140,176,388	0/1:0,6:11:43:260,70,43	0/0:9,0:19:99:148,175,334	0/1:1,9:17:89:345,92,89	0/1:0,7:12:67:299,91,67	0/0:11,0:20:99:115,148,342	0/1:1,9:18:99:369,130,119	0/0:0,0:30:89:662,662,662	0/1:0,3:7:79:176,79,159	0/1:0,1:3:11:62,35,32	0/1:4,7:11:90:131,0,90
-chr2	67234368	rs11337895	TA	T	901.48	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.645;DB;DP=230;ExcessHet=9.0714;FS=3.637;InbreedingCoeff=-0.5169;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;QD=7.84;ReadPosRankSum=-0.566;SOR=0.397;VQSLOD=7.87;culprit=MQRankSum;CSQ=-|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.538314;gno_non_neuro_af_nfe=0.539987;gno_non_neuro_nhomalt_all=761;gno_non_neuro_nhomalt_nfe=470;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:18,0:18:40:.:.:0,40,577:.	0/1:6,11:17:89:.:.:219,0,89:.	0/0:10,0:10:30:.:.:0,30,338:.	0/1:8,13:21:99:.:.:255,0,121:.	0/1:8,5:13:83:.:.:83,0,149:.	0|0:13,0:13:39:0|1:67234368_T_TAAAAAA:0,39,574:67234368	0/1:5,2:7:28:.:.:28,0,96:.	0/0:30,0:30:0:.:.:0,0,614:.	0/1:9,9:19:99:.:.:167,0,155:.	0/1:9,8:17:99:.:.:137,0,149:.	0/1:18,4:22:26:.:.:26,0,533:.
-chr2	69028241	rs138417826	T	TA	3489.38	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.852;DB;DP=456;ExcessHet=9.0714;FS=4.856;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60.04;MQRankSum=0;QD=12.69;ReadPosRankSum=-0.452;SOR=0.47;VQSLOD=8.44;culprit=MQRankSum;CSQ=A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000295381|protein_coding||4/10|ENST00000295381.3:c.467-6158dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409030|protein_coding||3/9|ENST00000409030.3:c.446-6158dup|||||||||1||HGNC|28951||CCDS46312.1|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409202|protein_coding||4/10|ENST00000409202.3:c.467-6155dup|||||||||1||HGNC|28951|YES|CCDS33214.2|||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000409220|protein_coding||3/9|ENST00000409220.1:c.446-6155dup|||||||||1||HGNC|28951||CCDS54364.1|||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000456116|processed_transcript||3/4|ENST00000456116.2:n.685-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000463483|nonsense_mediated_decay||5/7|ENST00000463483.1:c.389-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000467265|protein_coding||3/9|ENST00000467265.1:c.350-6158dup|||||||||1||HGNC|28951||CCDS54363.1|||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000473986|nonsense_mediated_decay||4/7|ENST00000473986.1:c.*292-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000485700|processed_transcript||4/4|ENST00000485700.1:n.634-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant&NMD_transcript_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000488795|nonsense_mediated_decay||2/4|ENST00000488795.1:c.262-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000497079|protein_coding||3/7|ENST00000497079.1:c.446-6155dup|||||||||1||HGNC|28951|||||,A|intron_variant|MODIFIER|ARHGAP25|ENSG00000163219|Transcript|ENST00000544262|protein_coding||4/6|ENST00000544262.1:c.389-6155dup|||||||||1||HGNC|28951|||||;cadd_phred=-1;gno_non_neuro_af_all=0.474334;gno_non_neuro_af_nfe=0.504923;gno_non_neuro_nhomalt_all=2296;gno_non_neuro_nhomalt_nfe=1651;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,99,1261	0/1:10,26:36:99:635,0,173	0/0:39,0:39:99:0,103,1297	0/1:18,20:38:99:457,0,402	0/1:15,18:33:99:415,0,330	0/0:40,0:40:99:0,99,1485	0/1:15,11:26:99:236,0,353	0/0:36,0:36:99:0,100,1266	0/1:21,28:49:99:672,0,451	0/1:19,17:36:99:378,0,435	0/1:26,31:57:99:714,0,574
-chr2	71706563	rs13007337	G	C	2232.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-1.192;DB;DP=390;ExcessHet=9.0714;FS=8.279;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=9.19;ReadPosRankSum=-0.344;SOR=1;VQSLOD=24.29;culprit=MQRankSum;CSQ=C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000258104|protein_coding||1/54|ENST00000258104.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS1918.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000394120|protein_coding||1/54|ENST00000394120.2:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46331.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409366|protein_coding||1/55|ENST00000409366.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46330.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409582|protein_coding||1/55|ENST00000409582.3:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46324.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409651|protein_coding||1/55|ENST00000409651.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46327.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409744|protein_coding||1/54|ENST00000409744.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46332.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000409762|protein_coding||1/54|ENST00000409762.1:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46325.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410020|protein_coding||1/55|ENST00000410020.3:c.92-1450G>C|||||||||1||HGNC|3097|YES|CCDS46328.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000410041|protein_coding||1/54|ENST00000410041.1:c.92-1450G>C|||||||||1||HGNC|3097||CCDS46329.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000413539|protein_coding||1/55|ENST00000413539.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46323.1|||,C|intron_variant|MODIFIER|DYSF|ENSG00000135636|Transcript|ENST00000429174|protein_coding||1/55|ENST00000429174.2:c.89-1450G>C|||||||||1||HGNC|3097||CCDS46326.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.340463;gno_non_neuro_af_nfe=0.411795;gno_non_neuro_nhomalt_all=1286;gno_non_neuro_nhomalt_nfe=1098;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:31,0:31:90:0,90,1350	0/1:14,12:26:99:329,0,352	0/0:25,0:25:72:0,72,849	0/1:19,12:31:99:313,0,567	0/1:24,14:38:99:372,0,717	0/0:34,0:34:99:0,99,1485	0/1:20,9:29:99:201,0,599	0/0:38,0:38:99:0,101,1250	0/1:18,15:33:99:327,0,527	0/1:27,16:43:99:327,0,781	0/1:26,17:43:99:381,0,752
-chr2	114352135	rs3982679	G	A	665.14	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.216;DB;DP=554;ExcessHet=9.0714;FS=49.345;InbreedingCoeff=-0.4741;MLEAC=7;MLEAF=0.318;MQ=42.7;MQRankSum=-3.311;QD=1.79;ReadPosRankSum=-0.866;SOR=4.068;VQSLOD=-32.31;culprit=SOR;CSQ=A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000326632|transcribed_unprocessed_pseudogene||2/10|ENST00000326632.7:n.205-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000437401|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000453662|transcribed_unprocessed_pseudogene||1/9|ENST00000453662.2:n.155-505G>A|||||||||1||HGNC|33145|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000457993|unprocessed_pseudogene|||||||||||4478|-1||HGNC|37103|||||,A|downstream_gene_variant|MODIFIER|DDX11L2|ENSG00000236397|Transcript|ENST00000535848|unprocessed_pseudogene|||||||||||4471|-1||HGNC|37103|YES||||,A|non_coding_transcript_exon_variant|MODIFIER|WASH2P|ENSG00000146556|Transcript|ENST00000538033|retained_intron|1/7||ENST00000538033.2:n.383G>A||383/2800|||||||1||HGNC|33145|YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.092277;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.0950659;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;genic;highest_impact_order=39;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:46,0:46:79:0,79,1390	0/1:33,9:42:99:139,0,965	0/0:34,0:34:43:0,43,1053	0/1:51,14:65:99:207,0,1544	0/1:43,7:50:63:63,0,1392	0/0:43,3:46:47:0,47,1416	0/1:47,12:59:99:170,0,1383	0/0:49,5:54:8:0,8,1534	0/1:42,6:48:12:12,0,1239	0/1:39,8:47:63:63,0,1060	0/1:52,8:60:28:28,0,1503
-chr7	628664	rs73254203	A	G	533.56	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=-1.067;DB;DP=545;ExcessHet=9.0714;FS=0.653;InbreedingCoeff=-0.5133;MLEAC=7;MLEAF=0.318;MQ=54.65;MQRankSum=-4.686;QD=2.21;ReadPosRankSum=1.18;SOR=0.58;VQSLOD=-3.475;culprit=MQ;CSQ=G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000360274|protein_coding||7/10|ENST00000360274.4:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000400758|protein_coding||2/5|ENST00000400758.2:c.291-4459T>C|||||||||-1|cds_start_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000403562|protein_coding||7/10|ENST00000403562.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000406797|protein_coding||7/10|ENST00000406797.1:c.709-4459T>C|||||||||-1||HGNC|9390|YES|CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000430040|protein_coding||7/8|ENST00000430040.1:c.709-4459T>C|||||||||-1|cds_end_NF|HGNC|9390|||||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000537384|protein_coding||7/10|ENST00000537384.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||,G|intron_variant|MODIFIER|PRKAR1B|ENSG00000188191|Transcript|ENST00000544935|protein_coding||7/10|ENST00000544935.1:c.709-4459T>C|||||||||-1||HGNC|9390||CCDS34579.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.185854;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.188696;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:33,0:33:0:.:.:0,0,788:.	0|1:19,2:21:1:0|1:628664_A_G:1,0,739:628664	0/0:26,0:26:8:.:.:0,8,673:.	0|1:13,2:15:10:0|1:628664_A_G:10,0,442:628664	0|1:38,5:43:70:0|1:628664_A_G:70,0,1523:628664	0/0:27,0:27:12:.:.:0,12,759:.	0|1:11,1:12:6:0|1:628664_A_G:6,0,403:628664	0/0:44,0:44:0:.:.:0,0,1002:.	0|1:46,12:58:99:0|1:628664_A_G:149,0,2480:628664	0|1:28,6:34:99:0|1:628664_A_G:129,0,2666:628664	0|1:60,10:70:99:0|1:628664_A_G:177,0,3575:628664
-chr7	143492092	.	C	T	975.5	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=1.06;DP=299;ExcessHet=9.0714;FS=0;InbreedingCoeff=-0.5172;MLEAC=7;MLEAF=0.318;MQ=39.44;MQRankSum=0;QD=5.19;ReadPosRankSum=0.319;SOR=0.346;VQSLOD=-4.537;culprit=MQ;CSQ=T|upstream_gene_variant|MODIFIER|RP11-307I2.1|ENSG00000232145|Transcript|ENST00000421443|processed_pseudogene|||||||||||1296|1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000422705|transcribed_unprocessed_pseudogene||1/5|ENST00000422705.2:n.66+41641G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000427403|transcribed_unprocessed_pseudogene||2/6|ENST00000427403.1:n.692+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000450076|transcribed_unprocessed_pseudogene||2/6|ENST00000450076.1:n.706+38248G>A|||||||||-1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM115D|ENSG00000159860|Transcript|ENST00000456362|unprocessed_pseudogene||1/6|ENST00000456362.1:n.133-14991C>T|||||||||1||HGNC|33603|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-61L23.2|ENSG00000253882|Transcript|ENST00000491047|processed_transcript||3/4|ENST00000491047.1:n.304+16549G>A|||||||||-1||Clone_based_vega_gene||||||;cadd_phred=-1;gno_non_neuro_af_all=0.0307973;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.0267106;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:22,0:22:66:0,66,735	0/1:19,5:24:99:102,0,578	0/0:28,0:28:0:0,0,735	0/1:29,6:35:99:104,0,868	0/1:24,6:30:99:119,0,706	0/0:31,0:31:93:0,93,1068	0/1:14,4:18:85:85,0,382	0/0:30,0:30:87:0,87,1305	0/1:15,14:29:99:390,0,278	0/1:20,4:24:64:64,0,431	0/1:22,6:28:99:125,0,469
-chr7	143897347	rs147865002	A	G	963.51	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=309;ExcessHet=9.0714;FS=85.285;InbreedingCoeff=-0.5174;MLEAC=7;MLEAF=0.318;MQ=33.37;MQRankSum=1.79;QD=4.24;ReadPosRankSum=-0.238;SOR=6.827;VQSLOD=-97.48;culprit=SOR;CSQ=G|upstream_gene_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000378115|protein_coding|||||||||||4599|-1||HGNC|33846|YES|CCDS34770.1|||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.381+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense|2/6||ENST00000464929.1:n.432A>G||432/819|||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense|2/4||ENST00000474656.1:n.428A>G||428/773|||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.170+4197A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.183+4553A>G|||||||||1||Clone_based_vega_gene||||||,G|non_coding_transcript_exon_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense|2/5||ENST00000498693.1:n.366A>G||366/856|||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-11859T>C|||||||||-1||HGNC|33846||CCDS34770.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.26168;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.250156;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=55;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=37;gno_non_neuro_nhomalt_nfe_filter;genic;highest_impact_order=39;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,99,1485	0/1:26,5:31:78:78,0,758	0/0:20,0:20:0:0,0,546	0/1:22,6:28:99:118,0,633	0/1:21,6:27:99:124,0,619	0/0:14,0:14:42:0,42,477	0/1:20,9:29:99:226,0,569	0/0:10,0:10:30:0,30,327	0/1:30,7:37:99:123,0,868	0/1:25,5:30:74:74,0,717	0/1:34,11:45:99:234,0,958
-chr7	143901937	.	C	T	1396.5	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.501;DP=670;ExcessHet=9.0714;FS=4.325;InbreedingCoeff=-0.5172;MLEAC=7;MLEAF=0.318;MQ=27.51;MQRankSum=0.158;QD=3.03;ReadPosRankSum=0.108;SOR=0.991;VQSLOD=-10.21;culprit=MQ;CSQ=T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2846|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2848|1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2849C>T|||||||||1||Clone_based_vega_gene||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2849C>T|||||||||1||Clone_based_vega_gene||YES||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16449G>A|||||||||-1||HGNC|33846||CCDS34770.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.134101;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.103901;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=9;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=2;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,99,1172	0/1:51,12:63:99:172,0,1373	0/0:99,0:99:0:0,0,2745	0/1:71,14:85:99:167,0,1970	0/1:86,12:98:73:73,0,2339	0/0:38,0:38:99:0,102,1361	0/1:34,14:48:99:289,0,938	0/0:38,0:38:99:0,100,1232	0/1:47,8:55:89:89,0,1303	0/1:41,10:51:99:157,0,1140	0/1:40,21:61:99:463,0,1066
-chr7	143901963	rs199990667	G	A	1765.37	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=1.5;DB;DP=878;ExcessHet=9.0714;FS=1.528;InbreedingCoeff=-0.4643;MLEAC=7;MLEAF=0.318;MQ=27.67;MQRankSum=0.017;QD=2.73;ReadPosRankSum=0.773;SOR=0.67;VQSLOD=-10.09;culprit=MQ;CSQ=A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||2820|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||2822|1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-2823G>A|||||||||1||Clone_based_vega_gene||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-2823G>A|||||||||1||Clone_based_vega_gene||YES||||,A|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-16475C>T|||||||||-1||HGNC|33846||CCDS34770.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.182612;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.148653;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=11;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=2;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,99,1172	0/1:66,14:80:99:191,0,1971	0/0:112,10:122:44:0,44,3264	0/1:86,15:101:99:173,0,2550	0/1:104,12:116:16:16,0,3073	0/0:38,0:38:99:0,102,1361	0/1:43,19:62:99:382,0,1249	0/0:38,0:38:99:0,100,1232	0/1:74,12:86:99:123,0,2013	0/1:79,12:91:72:72,0,2228	0/1:72,38:110:99:826,0,2017
-chr7	143904241	rs149376936	A	G	1691.5	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=0.018;DB;DP=701;ExcessHet=9.0714;FS=11.359;InbreedingCoeff=-0.5172;MLEAC=7;MLEAF=0.318;MQ=32.63;MQRankSum=-0.299;QD=3.25;ReadPosRankSum=-1.483;SOR=1.497;VQSLOD=-9.891;culprit=MQ;CSQ=G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000460955|antisense||1/2|ENST00000460955.1:n.382-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000464929|antisense||2/5|ENST00000464929.1:n.456-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000474656|antisense||2/3|ENST00000474656.1:n.452-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000477797|antisense|||||||||||542|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000480074|antisense||1/2|ENST00000480074.1:n.171-545A>G|||||||||1||Clone_based_vega_gene||||||,G|upstream_gene_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000489077|antisense|||||||||||544|1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000493248|antisense||1/4|ENST00000493248.1:n.184-545A>G|||||||||1||Clone_based_vega_gene||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RP4-545C24.1|ENSG00000244198|Transcript|ENST00000498693|antisense||2/4|ENST00000498693.1:n.390-545A>G|||||||||1||Clone_based_vega_gene||YES||||,G|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-12-18753T>C|||||||||-1||HGNC|33846||CCDS34770.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.274984;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.262682;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=1;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=1;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,99,1232	0/1:53,16:69:99:287,0,1475	0/0:74,0:74:0:0,0,1977	0/1:49,8:57:80:80,0,1368	0/1:69,15:84:99:227,0,1857	0/0:34,0:34:99:0,99,1182	0/1:27,15:42:99:331,0,740	0/0:34,0:34:99:0,102,1132	0/1:74,21:95:99:388,0,2021	0/1:58,16:74:99:273,0,1627	0/1:87,13:100:99:119,0,2434
-chr7	143989050	rs200834183	C	T	945.42	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=282;ExcessHet=9.0714;FS=7.071;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=26.71;MQRankSum=0;QD=4.95;ReadPosRankSum=-0.532;SOR=0.952;VQSLOD=-10.45;culprit=MQ;CSQ=T|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2161G>A|||||||||-1||HGNC|38086|YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40347G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19634G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40347G>A|||||||||-1||HGNC|49168|||||,T|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2523|1||HGNC|8236|||||,T|upstream_gene_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000483587|unprocessed_pseudogene|||||||||||4991|-1||HGNC|38086|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37261G>A|||||||||-1||HGNC|49168|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39465G>A|||||||||-1||HGNC|49168|||||,T|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2161G>A|||||||||-1||HGNC|33846||CCDS34770.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.300719;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.280411;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=8;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=6;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1062	0/1:21,5:26:75:75,0,582	0/0:25,0:25:50:0,50,810	0/1:11,3:14:52:52,0,290	0/1:20,9:29:99:186,0,487	0/0:16,0:16:48:0,48,556	0/1:9,7:16:99:165,0,220	0/0:17,0:17:51:0,51,591	0/1:22,8:30:99:148,0,564	0/1:25,10:35:99:187,0,640	0/1:31,10:41:99:150,0,780
-chr7	143989124	rs201464581	T	C	1771.5	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=-2.573;DB;DP=437;ExcessHet=9.0714;FS=13.386;InbreedingCoeff=-0.5172;MLEAC=7;MLEAF=0.318;MQ=25.57;MQRankSum=0;QD=5.87;ReadPosRankSum=-0.174;SOR=1.348;VQSLOD=-14;culprit=MQ;CSQ=C|intron_variant&non_coding_transcript_variant|MODIFIER|ARHGEF34P|ENSG00000204959|Transcript|ENST00000378112|unprocessed_pseudogene||1/11|ENST00000378112.1:n.46+2087A>G|||||||||-1||HGNC|38086|YES||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000461843|antisense||1/1|ENST00000461843.1:n.113-40421A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000463561|antisense||5/5|ENST00000463561.1:n.578+19560A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000476560|antisense||1/2|ENST00000476560.1:n.158-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000478806|antisense||1/1|ENST00000478806.1:n.371-40421A>G|||||||||-1||HGNC|49168|||||,C|upstream_gene_variant|MODIFIER|OR2A9P|ENSG00000228960|Transcript|ENST00000479102|processed_transcript|||||||||||2449|1||HGNC|8236|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000487102|antisense||2/2|ENST00000487102.1:n.161-37335A>G|||||||||-1||HGNC|49168|||||,C|intron_variant&non_coding_transcript_variant|MODIFIER|OR2A1-AS1|ENSG00000244479|Transcript|ENST00000489488|antisense||1/1|ENST00000489488.1:n.264-39539A>G|||||||||-1||HGNC|49168|||||,C|intron_variant|MODIFIER|ARHGEF35|ENSG00000213214|Transcript|ENST00000543357|protein_coding||1/1|ENST00000543357.1:c.-13+2087A>G|||||||||-1||HGNC|33846||CCDS34770.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.31982;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.305004;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=4;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=4;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,99,1232	0/1:22,11:33:99:228,0,569	0/0:44,0:44:0:0,0,1252	0/1:30,9:39:99:151,0,781	0/1:34,14:48:99:258,0,868	0/0:25,0:25:72:0,72,863	0/1:14,12:26:99:279,0,338	0/0:30,0:30:90:0,90,1033	0/1:36,15:51:99:258,0,918	0/1:39,15:54:99:240,0,974	0/1:32,19:51:99:371,0,799
-chr7	144659042	rs57146390	TATACAC	T	997.48	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=313;ExcessHet=9.0714;FS=6.166;InbreedingCoeff=-0.5298;MLEAC=7;MLEAF=0.318;MQ=60.14;MQRankSum=0;QD=7.61;ReadPosRankSum=0.794;SOR=0.752;VQSLOD=7.17;culprit=MQRankSum;CSQ=-|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.0591229;gno_non_neuro_af_nfe=0.0532034;gno_non_neuro_nhomalt_all=13;gno_non_neuro_nhomalt_nfe=5;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:19,0:19:57:0,57,750	0/1:14,7:21:99:152,0,596	0/0:12,1:13:7:0,7,495	0/1:14,4:18:75:75,0,576	0/1:15,9:24:99:207,0,718	0/0:28,0:28:0:0,0,432	0/1:7,12:19:99:306,0,323	0/0:17,0:17:51:0,51,765	0/1:9,2:12:13:13,0,536	0/1:5,6:11:99:156,0,214	0/1:21,6:28:99:101,0,1004
-chr7	146603134	rs4295575	G	A	5086.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.052;DB;DP=478;ExcessHet=9.0714;FS=5.008;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=53.32;MQRankSum=0.189;NEGATIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=0.593;SOR=0.489;VQSLOD=-1.811;culprit=MQ;CSQ=A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.402+66138G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.0395233;gno_non_neuro_af_nfe=0.0491249;gno_non_neuro_nhomalt_all=12;gno_non_neuro_nhomalt_nfe=10;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,102,1381	0/1:12,18:30:99:525,0,327	0/0:32,0:32:96:0,96,1042	0/1:26,21:47:99:544,0,723	0/1:19,37:56:99:1058,0,492	0/0:43,0:43:99:0,114,1510	0/1:23,19:42:99:494,0,653	0/0:34,0:34:99:0,99,1111	0/1:26,26:52:99:732,0,627	0/1:15,26:41:99:768,0,338	0/1:27,35:62:99:983,0,597
-chr7	146655898	.	C	G	4675.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=1.18;DP=448;ExcessHet=9.0714;FS=1.828;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;QD=14.43;ReadPosRankSum=0.683;SOR=0.819;VQSLOD=21.97;culprit=MQRankSum;CSQ=G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||3/23|ENST00000361727.3:c.403-85101C>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=-1;gno_non_neuro_af_nfe=-1;gno_non_neuro_nhomalt_all=-1;gno_non_neuro_nhomalt_nfe=-1;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:28,0:28:78:0,78,1029	0/1:11,16:27:99:465,0,266	0/0:40,0:40:99:0,104,1281	0/1:15,21:36:99:622,0,388	0/1:23,19:42:99:535,0,618	0/0:28,0:28:81:0,81,953	0/1:20,16:36:99:423,0,567	0/0:26,0:26:78:0,78,904	0/1:23,30:53:99:884,0,614	0/1:25,34:59:99:970,0,672	0/1:42,29:71:99:794,0,1201
-chr7	146778675	rs5888235;rs5888236;rs72004618	T	TTG	3161.52	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.231;DB;DP=332;ExcessHet=11.8014;FS=5.311;InbreedingCoeff=-0.5714;MLEAC=7;MLEAF=0.318;MQ=59.84;MQRankSum=0;QD=17.37;ReadPosRankSum=-0.222;SOR=0.642;VQSLOD=6.77;culprit=MQRankSum;CSQ=TG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-26520_551-26519dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,TG|non_coding_transcript_exon_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense|4/4||ENST00000434887.1:n.1494_1495dup||1495-1496/2145|||||||-1||Clone_based_vega_gene||YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.0743969;gno_non_neuro_af_nfe=0.051922;gno_non_neuro_nhomalt_all=83;gno_non_neuro_nhomalt_nfe=14;genic;highest_impact_order=39;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:17,0:29:99:.:.:454,505,1242:.	0|1:8,4:12:80:0|1:146778675_T_TTG:80,0,182:146778675	0/0:12,0:22:99:.:.:385,421,925:.	0/1:6,9:15:99:.:.:204,0,115:.	0/1:6,11:17:99:.:.:246,0,113:.	0/0:10,0:22:99:.:.:459,489,916:.	1/0:0,4:12:99:.:.:288,216,321:.	0/0:8,0:21:99:.:.:422,381,625:.	0/1:5,3:8:56:.:.:56,0,112:.	0/1:0,3:12:80:.:.:433,362,354:.	1/0:2,5:12:81:.:.:177,83,210:.
-chr7	146790164	rs10596701;rs10603504;rs71165068	C	CAT	10890.1	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=452;ExcessHet=3.6798;FS=8.604;InbreedingCoeff=-0.1579;MLEAC=7;MLEAF=0.318;MQ=59.87;MQRankSum=0;QD=29.2;ReadPosRankSum=0.461;SOR=0.459;VQSLOD=5.58;culprit=MQRankSum;CSQ=AT|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||4/23|ENST00000361727.3:c.551-15056_551-15055dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||,AT|intron_variant&non_coding_transcript_variant|MODIFIER|AC006004.1|ENSG00000236795|Transcript|ENST00000434887|antisense||1/3|ENST00000434887.1:n.178+4358_178+4359dup|||||||||-1||Clone_based_vega_gene||YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.0176655;gno_non_neuro_af_nfe=0.0213255;gno_non_neuro_nhomalt_all=2;gno_non_neuro_nhomalt_nfe=1;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:8,0:24:99:504,528,791	0/1:13,13:26:99:381,0,355	0/0:0,0:36:99:1294,1294,1294	0/1:0,18:27:99:851,283,266	0/1:0,25:49:99:1584,851,918	0/0:0,0:26:78:948,948,948	0/1:16,13:29:99:397,0,475	0/0:1,0:31:58:1059,1062,1095	0/1:1,18:41:99:1268,739,836	0/1:1,15:39:99:1190,761,883	0/1:1,25:45:99:1413,631,708
-chr7	146834965	rs57215903;rs5888238	G	GTAGA	5515.04	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.126;DB;DP=475;ExcessHet=9.3779;FS=8.071;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60.28;MQRankSum=0.905;QD=22.79;ReadPosRankSum=0.714;SOR=0.948;VQSLOD=1.87;culprit=FS;CSQ=TAGA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1348+5404_1348+5407dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.223366;gno_non_neuro_af_nfe=0.21519;gno_non_neuro_nhomalt_all=457;gno_non_neuro_nhomalt_nfe=274;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0|0:11,0:27:99:0|1:146834965_G_GTAGATAGA:714,749,1212:146834965	0/1:0,16:25:99:.:.:1194,388,329:.	0/0:34,0:34:96:.:.:0,96,1440:.	0/1:12,16:28:99:.:.:624,0,526:.	0/1:9,12:21:99:.:.:476,0,409:.	0/0:37,0:37:99:.:.:0,100,1205:.	0/1:11,16:27:99:.:.:616,0,473:.	0/0:11,0:23:99:.:.:451,484,987:.	0|1:23,9:32:99:0|1:146834965_G_GTAGA:304,0,927:146834965	0|1:15,16:31:99:0|1:146834965_G_GTAGA:640,0,582:146834965	0|1:15,13:28:99:0|1:146834965_G_GTAGA:538,0,578:146834965
-chr7	146944250	.	A	G	4499.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.356;DP=450;ExcessHet=9.0714;FS=5.792;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;QD=14.15;ReadPosRankSum=0.214;SOR=0.52;VQSLOD=22.12;culprit=MQRankSum;CSQ=G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-52983A>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=-1;gno_non_neuro_af_nfe=-1;gno_non_neuro_nhomalt_all=-1;gno_non_neuro_nhomalt_nfe=-1;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1017	0/1:22,20:42:99:569,0,593	0/0:32,0:32:90:0,90,1350	0/1:16,27:43:99:750,0,408	0/1:16,21:37:99:584,0,435	0/0:37,0:37:99:0,102,1266	0/1:14,21:35:99:605,0,381	0/0:30,0:30:90:0,90,1043	0/1:16,25:41:99:736,0,422	0/1:29,21:50:99:555,0,858	0/1:43,27:70:99:718,0,1282
-chr7	146983589	rs185313161	C	T	5317.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=2.36;DB;DP=508;ExcessHet=9.0714;FS=4.61;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.217;SOR=0.552;VQSLOD=23.44;culprit=MQRankSum;CSQ=T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||8/23|ENST00000361727.3:c.1349-13644C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.0140439;gno_non_neuro_af_nfe=0.0185213;gno_non_neuro_nhomalt_all=4;gno_non_neuro_nhomalt_nfe=4;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,105,1256	0/1:20,17:37:99:448,0,436	0/0:37,0:37:99:0,99,1230	0/1:14,24:38:99:720,0,342	0/1:25,19:44:99:483,0,727	0/0:35,0:35:99:0,102,1076	0/1:10,13:23:99:383,0,268	0/0:34,0:34:99:0,102,1121	0/1:29,28:57:99:778,0,662	0/1:37,43:80:99:1244,0,824	0/1:39,46:85:99:1279,0,835
-chr7	147053066	.	C	T	3979.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DP=462;ExcessHet=9.0714;FS=0.839;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=59.94;MQRankSum=0;QD=12.1;ReadPosRankSum=0.836;SOR=0.766;VQSLOD=6.9;culprit=MQRankSum;CSQ=T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-39635C>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=4.705e-05;gno_non_neuro_af_nfe=0;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_nfe=0;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,99,1307	0/1:19,16:35:99:442,0,496	0/0:36,0:36:99:0,102,1195	0/1:32,24:56:99:646,0,879	0/1:21,31:52:99:901,0,563	0/0:37,0:37:99:0,111,1246	0/1:11,15:26:99:444,0,279	0/0:23,0:23:60:0,60,820	0/1:26,12:38:99:303,0,789	0/1:35,24:59:99:646,0,1028	0/1:39,24:63:99:615,0,1165
-chr7	147063869	.	GCACGCA	G	4498.92	VQSRTrancheINDEL99.00to99.90	AC=7;AF=0.318;AN=22;BaseQRankSum=0.785;DP=404;ExcessHet=6.4503;FS=21.408;InbreedingCoeff=-0.3167;MLEAC=7;MLEAF=0.318;MQ=60.48;MQRankSum=1.34;NEGATIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=-0.235;SOR=0.848;VQSLOD=-0.7725;culprit=MQ;CSQ=-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-28828_1499-28823del|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.0303613;gno_non_neuro_af_nfe=0.0327977;gno_non_neuro_nhomalt_all=9;gno_non_neuro_nhomalt_nfe=6;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:34,0:34:67:.:.:0,67,1052:.	0/1:15,17:32:99:.:.:638,0,946:.	0/0:37,0:37:27:.:.:0,27,1028:.	0|1:19,11:30:99:0|1:147063869_GCACGCA_G:383,0,744:147063869	0/1:15,22:37:99:.:.:847,0,543:.	0/0:33,0:33:30:.:.:0,30,968:.	0|1:11,14:25:99:0|1:147063869_GCACGCA_G:533,0,399:147063869	0|0:12,0:27:99:0|1:147063868_TGCAC_T:561,598,1102:147063868	0/1:18,26:44:99:.:.:965,0,1085:.	0/1:27,20:47:99:.:.:695,0,1023:.	1/0:0,13:31:99:.:.:1776,591,466:.
-chr7	147067882	rs62482227	G	T	5110.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.49;DB;DP=499;ExcessHet=9.0714;FS=1.241;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=-0.477;SOR=0.785;VQSLOD=23.37;culprit=MQRankSum;CSQ=T|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||9/23|ENST00000361727.3:c.1499-24819G>T|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.0155809;gno_non_neuro_af_nfe=0.0210874;gno_non_neuro_nhomalt_all=6;gno_non_neuro_nhomalt_nfe=6;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,102,1530	0/1:12,25:37:99:732,0,266	0/0:39,0:39:99:0,102,1326	0/1:27,23:50:99:604,0,712	0/1:20,23:43:99:654,0,565	0/0:20,0:20:54:0,54,810	0/1:29,19:48:99:516,0,821	0/0:36,0:36:99:0,99,1285	0/1:30,29:59:99:825,0,845	0/1:27,28:55:99:797,0,763	0/1:37,35:72:99:1000,0,1070
-chr7	147118677	rs10696030;rs145095088;rs55983110	C	CTGTGTG	14210.2	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=481;ExcessHet=3.2222;FS=3.536;InbreedingCoeff=-0.1;MLEAC=7;MLEAF=0.318;MQ=60.13;MQRankSum=0;QD=28.73;ReadPosRankSum=-0.114;SOR=0.891;VQSLOD=8.31;culprit=MQRankSum;CSQ=TGTGTG|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+25829_1670+25834dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=-1;gno_non_neuro_af_nfe=-1;gno_non_neuro_nhomalt_all=-1;gno_non_neuro_nhomalt_nfe=-1;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:0,0:30:99:1584,1448,1424	0/1:0,19:37:99:1657,763,698	0/0:0,0:31:99:1557,1447,1424	1/0:0,12:23:99:973,449,408	1/0:0,15:25:99:1079,422,374	0/0:0,0:33:99:1562,1362,1345	1/0:0,9:19:99:932,470,434	0/0:19,0:44:99:885,949,1792	0/1:0,19:38:99:1877,777,691	1/0:0,10:23:99:1236,612,559	0/1:30,24:54:99:904,0,1951
-chr7	147124964	rs62481225	T	G	4824.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=472;ExcessHet=9.0714;FS=5.858;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.19;SOR=1.007;VQSLOD=23.86;culprit=MQRankSum;CSQ=G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+32092T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.0221218;gno_non_neuro_af_nfe=0.0290963;gno_non_neuro_nhomalt_all=5;gno_non_neuro_nhomalt_nfe=5;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,99,1281	0/1:14,18:32:99:530,0,390	0/0:33,0:33:87:0,87,1305	0/1:23,16:39:99:394,0,683	0/1:14,22:36:99:656,0,368	0/0:37,0:37:93:0,93,1395	0/1:14,27:41:99:750,0,364	0/0:37,0:37:99:0,99,1230	0/1:24,28:52:99:817,0,657	0/1:23,30:53:99:873,0,638	0/1:45,31:76:99:822,0,1315
-chr7	147128097	rs77602642	G	A	3528.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=1.31;DB;DP=424;ExcessHet=9.0714;FS=0.963;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=59.94;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=1.08;SOR=0.604;VQSLOD=8.18;culprit=MQRankSum;CSQ=A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1670+35225G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.12109;gno_non_neuro_af_nfe=0.161241;gno_non_neuro_nhomalt_all=180;gno_non_neuro_nhomalt_nfe=163;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,103,1330	0/1:13,12:25:99:331,0,367	0/0:33,0:33:90:0,90,1350	0/1:16,21:37:99:554,0,420	0/1:20,18:38:99:472,0,521	0/0:42,0:42:99:0,114,1324	0/1:17,13:30:99:362,0,480	0/0:36,0:36:99:0,102,1139	0/1:12,26:38:99:761,0,163	0/1:19,20:39:99:539,0,368	0/1:33,20:53:99:527,0,722
-chr7	147145574	rs10635826	G	GTA	3805.34	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.329;DB;DP=472;ExcessHet=20.6;FS=11.925;InbreedingCoeff=-0.8333;MLEAC=7;MLEAF=0.318;MQ=60.18;MQRankSum=0;QD=11.09;ReadPosRankSum=0.58;SOR=0.813;VQSLOD=5.5;culprit=MQRankSum;CSQ=TA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-37452_1671-37451insAT|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.216085;gno_non_neuro_af_nfe=0.241488;gno_non_neuro_nhomalt_all=193;gno_non_neuro_nhomalt_nfe=130;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:18,0:29:99:335,414,1270	0/1:19,14:33:99:374,0,534	0/0:21,0:31:99:258,322,1136	0/1:13,13:26:99:361,0,334	0/1:19,16:35:99:437,0,503	0/0:19,0:34:99:460,518,1250	0/1:13,9:22:99:279,0,405	0/0:40,0:40:99:0,102,1530	0/1:18,19:41:99:606,0,732	0/1:22,12:34:99:284,0,715	0/1:43,19:62:99:442,0,1708
-chr7	147157874	rs62482761	T	G	5099.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.968;DB;DP=471;ExcessHet=9.0714;FS=0.407;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.27;SOR=0.742;VQSLOD=23.52;culprit=MQRankSum;CSQ=G|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-25153T>G|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.0148552;gno_non_neuro_af_nfe=0.0195215;gno_non_neuro_nhomalt_all=5;gno_non_neuro_nhomalt_nfe=5;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,99,1306	0/1:16,11:27:99:291,0,473	0/0:38,0:38:99:0,100,1232	0/1:13,23:36:99:691,0,344	0/1:23,21:44:99:557,0,647	0/0:35,0:35:99:0,99,1197	0/1:13,18:31:99:487,0,359	0/0:35,0:35:99:0,99,1167	0/1:25,31:56:99:909,0,699	0/1:26,37:63:99:1087,0,712	0/1:27,38:65:99:1095,0,743
-chr7	147170359	rs79788773	G	A	4328.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=1.03;DB;DP=466;ExcessHet=9.0714;FS=0.402;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=0.547;SOR=0.737;VQSLOD=23.42;culprit=MQRankSum;CSQ=A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||10/23|ENST00000361727.3:c.1671-12668G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.129082;gno_non_neuro_af_nfe=0.16696;gno_non_neuro_nhomalt_all=204;gno_non_neuro_nhomalt_nfe=185;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,102,1332	0/1:12,15:27:99:417,0,326	0/0:35,0:35:99:0,99,1485	0/1:16,20:36:99:577,0,446	0/1:19,18:37:99:515,0,524	0/0:38,0:38:99:0,99,1416	0/1:18,10:28:99:250,0,501	0/0:29,0:29:84:0,84,978	0/1:36,29:65:99:813,0,935	0/1:25,28:53:99:804,0,579	0/1:44,35:79:99:970,0,1027
-chr7	147183978	rs62481262	T	C	3606.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-1.659;DB;DP=419;ExcessHet=9.0714;FS=4.886;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=59.59;MQRankSum=0;QD=13.36;ReadPosRankSum=-0.822;SOR=0.468;VQSLOD=4.37;culprit=MQRankSum;CSQ=C|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+845T>C|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.13837;gno_non_neuro_af_nfe=0.175109;gno_non_neuro_nhomalt_all=200;gno_non_neuro_nhomalt_nfe=181;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:31,0:31:84:.:.:0,84,1260:.	0/1:16,13:29:99:.:.:473,0,655:.	0/0:33,0:33:81:.:.:0,81,1215:.	0|1:18,18:36:99:0|1:147183978_T_C:451,0,494:147183978	0|1:11,18:29:99:0|1:147183978_T_C:497,0,295:147183978	0/0:42,0:42:96:.:.:0,96,1440:.	0/1:12,23:35:99:.:.:648,0,313:.	0/0:42,0:42:99:.:.:0,100,1364:.	0/1:26,19:45:99:.:.:667,0,964:.	0/1:32,15:47:99:.:.:300,0,883:.	0/1:30,19:49:99:.:.:588,0,3088:.
-chr7	147191560	rs10562874;rs370624966;rs371899542;rs377095658	C	CAAAAA	8243.32	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=288;ExcessHet=3.2222;FS=2.68;InbreedingCoeff=-0.1;MLEAC=7;MLEAF=0.318;MQ=60.07;MQRankSum=1.27;QD=35.92;ReadPosRankSum=-0.14;SOR=0.356;VQSLOD=0.871;culprit=QD;CSQ=AAAAA|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+8441_1777+8445dup|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.160172;gno_non_neuro_af_nfe=0.157468;gno_non_neuro_nhomalt_all=287;gno_non_neuro_nhomalt_nfe=172;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:0,0:11:46:719,495,447	0/1:0,4:16:70:787,349,293	0/0:0,0:27:99:1078,1091,1160	1/0:0,3:21:71:882,756,748	1/0:0,10:22:99:911,491,461	0/0:0,0:27:99:1168,1168,1168	1/0:0,6:16:99:655,404,386	0/0:13,0:31:99:617,668,1316	0/1:0,1:4:15:250,103,83	1/0:0,3:22:99:900,790,782	0/1:6,6:12:99:312,0,327
-chr7	147199809	rs60449695	ATG	A	2379.38	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.335;DB;DP=418;ExcessHet=9.0714;FS=0;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60.04;MQRankSum=0;QD=12.39;ReadPosRankSum=0;SOR=0.721;VQSLOD=8.85;culprit=MQRankSum;CSQ=-|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+16700_1777+16701del|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.142121;gno_non_neuro_af_nfe=0.168577;gno_non_neuro_nhomalt_all=201;gno_non_neuro_nhomalt_nfe=165;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:28,0:28:71:0,71,1029	0/1:9,13:22:99:372,0,378	0/0:31,0:31:87:0,87,1305	0/1:14,8:22:99:213,0,522	0/1:10,11:21:99:321,0,387	0/0:34,0:34:96:0,96,1440	0/1:9,16:25:99:483,0,305	0/0:35,0:35:99:0,99,1177	0/1:20,12:32:99:289,0,1073	0/1:19,8:27:99:185,0,691	0/1:24,19:43:99:534,0,657
-chr7	147205999	rs117125375	G	A	4605.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=1.45;DB;DP=479;ExcessHet=9.0714;FS=3.472;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.092;SOR=0.76;VQSLOD=23.44;culprit=MQRankSum;CSQ=A|intron_variant|MODIFIER|CNTNAP2|ENSG00000174469|Transcript|ENST00000361727|protein_coding||11/23|ENST00000361727.3:c.1777+22866G>A|||||||||1||HGNC|13830|YES|CCDS5889.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.0210274;gno_non_neuro_af_nfe=0.027027;gno_non_neuro_nhomalt_all=5;gno_non_neuro_nhomalt_nfe=5;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:31,0:31:90:0,90,1350	0/1:18,15:33:99:403,0,481	0/0:39,0:39:99:0,99,1305	0/1:19,14:33:99:387,0,541	0/1:18,23:41:99:676,0,492	0/0:35,0:35:99:0,99,1286	0/1:28,18:46:99:488,0,790	0/0:34,0:34:99:0,99,1162	0/1:27,25:52:99:713,0,632	0/1:20,23:43:99:670,0,435	0/1:47,45:92:99:1286,0,1114
-chr7	152103755	rs62496960	G	A	2001.84	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.796;DB;DP=534;ExcessHet=9.0714;FS=12.11;InbreedingCoeff=-0.4567;MLEAC=7;MLEAF=0.318;MQ=55.8;MQRankSum=-5.587;QD=5.87;ReadPosRankSum=2.02;SOR=0.643;VQSLOD=-2.653;culprit=MQ;CSQ=A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000262189|protein_coding||1/58|ENST00000262189.6:c.161+28956C>T|||||||||-1||HGNC|13726|YES|CCDS5931.1|||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000355193|protein_coding||1/59|ENST00000355193.2:c.161+28956C>T|||||||||-1||HGNC|13726|||||,A|intron_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000452749|protein_coding||1/3|ENST00000452749.1:c.161+28956C>T|||||||||-1|cds_end_NF|HGNC|13726|||||,A|downstream_gene_variant|MODIFIER|Y_RNA|ENSG00000253088|Transcript|ENST00000517279|misc_RNA|||||||||||3777|1||RFAM||YES||||,A|intron_variant&NMD_transcript_variant|MODIFIER|KMT2C|ENSG00000055609|Transcript|ENST00000558084|nonsense_mediated_decay||1/58|ENST00000558084.1:c.161+28956C>T|||||||||-1||HGNC|13726|||||;cadd_phred=-1;gno_non_neuro_af_all=-1;gno_non_neuro_af_nfe=-1;gno_non_neuro_nhomalt_all=-1;gno_non_neuro_nhomalt_nfe=-1;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,102,1227	0/1:25,3:28:35:35,0,745	0/0:39,0:39:83:0,83,1276	0/1:34,8:42:99:107,0,945	0/1:38,6:44:6:6,0,1113	0/0:40,0:40:16:0,16,1132	0/1:35,8:43:90:90,0,1057	0/0:50,0:50:11:0,11,1390	0/1:39,20:59:99:626,0,967	0/1:37,5:42:66:66,0,1018	0/1:46,37:83:99:1089,0,1139
-chr9	45645893	.	C	A	845.5	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.248;DP=486;ExcessHet=9.0714;FS=39.551;InbreedingCoeff=-0.4675;MLEAC=7;MLEAF=0.318;MQ=37.36;MQRankSum=-1.297;QD=2.68;ReadPosRankSum=1.44;SOR=2.488;VQSLOD=-23.11;culprit=MQ;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.0477956;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.0522528;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=2;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=2;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,100,1650	0/1:19,4:23:51:51,0,570	0/0:34,0:34:28:0,28,933	0/1:24,4:28:21:21,0,707	0/1:37,5:42:32:32,0,1094	0/0:37,0:37:61:0,61,1035	0/1:28,10:38:99:196,0,778	0/0:42,4:46:18:0,18,1219	0/1:43,15:58:99:272,0,1156	0/1:37,12:49:99:202,0,948	0/1:67,10:77:89:89,0,1888
-chr9	69791969	rs199990756	G	C	392.27	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=0.67;DB;DP=571;ExcessHet=9.0714;FS=0;InbreedingCoeff=-0.4585;MLEAC=7;MLEAF=0.318;MQ=31.18;MQRankSum=-1.009;QD=1.12;ReadPosRankSum=0.097;SOR=0.65;VQSLOD=-8.379;culprit=MQ;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.12686;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.146961;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:67,0:67:62:0,62,1890	0/1:37,9:46:84:84,0,1015	0/0:57,0:57:77:0,77,1652	0/1:43,4:47:21:21,0,1143	0/1:44,5:49:11:11,0,1198	0/0:51,4:55:33:0,33,1319	0/1:29,5:34:25:25,0,716	0/0:32,0:32:93:0,93,1395	0/1:41,7:48:99:117,0,1052	0/1:28,7:35:73:73,0,693	0/1:79,12:91:79:79,0,2051
-chr9	141127790	rs371587150	AG	A	1318.73	VQSRTrancheINDEL99.00to99.90	AC=7;AF=0.318;AN=22;BaseQRankSum=0.455;DB;DP=533;ExcessHet=28.3816;FS=0;InbreedingCoeff=-1;MLEAC=7;MLEAF=0.318;MQ=55.53;MQRankSum=-4.96;NEGATIVE_TRAIN_SITE;QD=2.67;ReadPosRankSum=-1.09;SOR=0.694;VQSLOD=-0.666;culprit=MQ;CSQ=-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000446912|lincRNA||3/8|ENST00000446912.2:n.906+6241del|||||||||1||HGNC|34080|YES||||,-|intron_variant&non_coding_transcript_variant|MODIFIER|FAM157B|ENSG00000233013|Transcript|ENST00000540522|lincRNA||6/6|ENST00000540522.1:n.1175+3518del|||||||||1||HGNC|34080|||||;cadd_phred=-1;gno_non_neuro_af_all=0.138235;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.106121;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=2;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=2;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:32,5:42:40:98,40,1003	0/1:32,10:44:99:207,0,942	0/0:29,0:33:83:83,170,1724	0/1:40,5:50:5:52,0,1205	0/1:35,9:44:99:173,0,1040	0/0:24,6:38:99:234,104,825	0/1:35,6:41:82:82,0,1051	0/0:57,0:62:37:37,235,4839	0/1:28,10:38:99:227,0,828	0/1:33,12:45:99:267,0,973	0/1:40,16:56:99:366,0,1169
-chr10	38817730	rs149479787	G	A	9006.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.153;DB;DP=4238;ExcessHet=9.0714;FS=0;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=53.89;MQRankSum=0.051;NEGATIVE_TRAIN_SITE;QD=3.46;ReadPosRankSum=-0.069;SOR=0.673;VQSLOD=-2.741;culprit=MQ;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=-1;gno_non_neuro_af_nfe=-1;gno_non_neuro_nhomalt_all=-1;gno_non_neuro_nhomalt_nfe=-1;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:416,0:416:99:.:.:0,120,1800:.	0/1:187,35:222:99:.:.:585,0,7694:.	0/0:423,0:423:99:.:.:0,120,1800:.	0|1:174,40:214:99:0|1:38817616_G_C:798,0,7102:38817616	0/1:508,53:561:99:.:.:298,0,20661:.	0/0:411,0:411:99:.:.:0,120,1800:.	0|1:142,47:189:99:0|1:38817616_G_C:1248,0,5620:38817616	0|0:239,17:256:38:0|1:38817730_G_A:0,38,9939:38817730	0/1:503,86:589:99:.:.:1222,0,20411:.	0|1:310,94:404:99:0|1:38817730_G_A:2872,0,12405:38817730	0|1:339,85:424:99:0|1:38817730_G_A:2001,0,13773:38817730
-chr10	47085032	rs10532119;rs147157851	CTT	C	14192.1	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=842;ExcessHet=3.0103;FS=32.53;InbreedingCoeff=nan;MLEAC=7;MLEAF=0.318;MQ=60.1;MQRankSum=0;QD=23.04;ReadPosRankSum=0.246;SOR=0.644;VQSLOD=3.51;culprit=MQRankSum;CSQ=-|intron_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000374312|protein_coding||1/2|ENST00000374312.1:c.-215-485_-215-484del|||||||||1||HGNC|9329|YES|CCDS31193.1|||,-|upstream_gene_variant|MODIFIER|NPY4R|ENSG00000204174|Transcript|ENST00000395716|protein_coding|||||||||||630|1||HGNC|9329||CCDS31193.1|||,-|intron_variant&non_coding_transcript_variant|MODIFIER|LINC00842|ENSG00000223477|Transcript|ENST00000503031|lincRNA||2/3|ENST00000503031.1:n.254-12055_254-12054del|||||||||-1||HGNC|44989|||||;cadd_phred=-1;gno_non_neuro_af_all=0.175121;gno_non_neuro_af_nfe=0.183934;gno_non_neuro_nhomalt_all=3;gno_non_neuro_nhomalt_nfe=3;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:6,0:83:99:1361,1455,2078	0/1:1,9:42:99:1584,1107,1009	0/0:5,0:61:99:1132,1216,1656	0/1:3,9:50:99:1232,995,1287	0/1:5,19:78:43:1206,507,496	0/0:0,14:61:99:1305,580,491	0/1:3,17:62:47:1576,745,612	0/0:5,0:42:99:755,832,1188	0/1:0,12:41:99:1462,921,811	0/1:5,9:62:90:1165,916,1177	0/1:0,8:40:99:1421,970,876
-chr10	51484678	.	C	A	1209.47	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=0.757;DP=407;ExcessHet=9.0714;FS=125.328;InbreedingCoeff=-0.4676;MLEAC=7;MLEAF=0.318;MQ=46.81;MQRankSum=-1.797;QD=4.38;ReadPosRankSum=-0.015;SOR=7.658;VQSLOD=-140.8;culprit=SOR;CSQ=A|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1301G>T|||||||||-1||HGNC|23465|YES|CCDS41524.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.0755986;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.0770628;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:35,0:35:99:.:.:0,99,1166:.	0|1:33,6:39:99:0|1:51484678_C_A:153,0,1997:51484678	0/0:27,0:27:42:.:.:0,42,759:.	0|1:42,7:49:99:0|1:51484678_C_A:167,0,2552:51484678	0|1:40,6:46:99:0|1:51484678_C_A:132,0,2324:51484678	0/0:30,0:30:21:.:.:0,21,853:.	0|1:19,3:22:69:0|1:51484678_C_A:69,0,1175:51484678	0/0:37,0:37:27:.:.:0,27,1098:.	0|1:29,10:39:99:0|1:51484678_C_A:333,0,1188:51484678	0|1:27,6:33:99:0|1:51484678_C_A:202,0,1469:51484678	0|1:41,7:48:99:0|1:51484678_C_A:171,0,1647:51484678
-chr10	51484680	.	C	T	1209.45	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=1.26;DP=406;ExcessHet=9.0714;FS=128.545;InbreedingCoeff=-0.4672;MLEAC=7;MLEAF=0.318;MQ=46.76;MQRankSum=-1.739;QD=4.41;ReadPosRankSum=0.194;SOR=7.701;VQSLOD=-146.4;culprit=SOR;CSQ=T|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1299G>A|||||||||-1||HGNC|23465|YES|CCDS41524.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.0797723;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.0813679;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:35,0:35:99:.:.:0,99,1166:.	0|1:33,6:39:99:0|1:51484678_C_A:153,0,1997:51484678	0/0:28,0:28:78:.:.:0,78,1170:.	0|1:42,7:49:99:0|1:51484678_C_A:167,0,2552:51484678	0|1:39,6:45:99:0|1:51484678_C_A:132,0,2324:51484678	0/0:31,0:31:23:.:.:0,23,827:.	0|1:19,3:22:69:0|1:51484678_C_A:69,0,1175:51484678	0/0:36,0:36:39:.:.:0,39,1072:.	0|1:29,10:39:99:0|1:51484678_C_A:333,0,1188:51484678	0|1:26,7:33:99:0|1:51484678_C_A:202,0,1469:51484678	0|1:40,7:47:99:0|1:51484678_C_A:171,0,1647:51484678
-chr10	51484776	rs146274111;rs66470138	TTA	T	1358.38	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=370;ExcessHet=9.0714;FS=52.172;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=35.31;MQRankSum=-0.438;QD=5.86;ReadPosRankSum=-0.742;SOR=3.021;VQSLOD=6.76;culprit=FS;CSQ=-|intron_variant|MODIFIER|AGAP7|ENSG00000204169|Transcript|ENST00000374095|protein_coding||1/6|ENST00000374095.5:c.223+1201_223+1202del|||||||||-1||HGNC|23465|YES|CCDS41524.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.269477;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.274031;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:29,0:29:81:0,81,1215	0/1:30,7:37:99:204,0,1301	0/0:30,0:30:84:0,84,1260	0/1:28,14:42:99:493,0,1170	0/1:48,9:57:99:213,0,2058	0/0:35,0:35:93:0,93,1395	0/1:19,5:24:99:153,0,827	0/0:37,0:37:99:0,102,1530	0/1:18,5:23:99:156,0,741	0/1:18,3:21:61:61,0,781	0/1:24,4:28:96:96,0,985
-chr11	134629969	rs79371799	A	C	4268.94	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.254;DB;DP=587;ExcessHet=9.0714;FS=38.555;InbreedingCoeff=-0.5714;MLEAC=8;MLEAF=0.364;MQ=50.54;MQRankSum=0.22;NEGATIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-1.48;SOR=1.328;VQSLOD=-12.21;culprit=MQ;CSQ=C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-999A>C|||||||||1||Clone_based_vega_gene||YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.389133;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.396508;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:73,0:73:0:.:.:0,0,1454:.	0|1:22,12:34:99:0|1:134629969_A_C:370,0,1386:134629969	0/0:60,0:60:0:.:.:0,0,963:.	0|1:36,7:43:99:0|1:134629969_A_C:169,0,1428:134629969	0|1:39,7:46:67:0|1:134629969_A_C:67,0,1650:134629969	0/0:23,0:23:69:.:.:0,69,749:.	0|1:27,9:36:99:0|1:134629969_A_C:244,0,1008:134629969	0/0:30,0:30:81:.:.:0,81,1215:.	0|1:50,11:61:99:0|1:134629969_A_C:163,0,2086:134629969	0|1:42,41:83:99:0|1:134629969_A_C:1531,0,1571:134629969	0|1:47,50:97:99:0|1:134629969_A_C:1734,0,1870:134629969
-chr11	134629972	rs113877482	A	C	4299.74	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.511;DB;DP=570;ExcessHet=11.8014;FS=24.473;InbreedingCoeff=-0.6923;MLEAC=8;MLEAF=0.364;MQ=50.58;MQRankSum=0.169;NEGATIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-0.579;SOR=1.466;VQSLOD=-5.583;culprit=MQ;CSQ=C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-469N6.1|ENSG00000251226|Transcript|ENST00000513405|lincRNA||1/1|ENST00000513405.1:n.948-996A>C|||||||||1||Clone_based_vega_gene||YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.411614;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.424807;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:66,0:66:0:.:.:0,0,1201:.	0|1:23,12:35:99:0|1:134629969_A_C:370,0,1386:134629969	0/0:55,0:55:0:.:.:0,0,313:.	0|1:36,7:43:99:0|1:134629969_A_C:169,0,1428:134629969	0|1:37,6:43:59:0|1:134629969_A_C:59,0,1688:134629969	0/0:22,0:22:66:.:.:0,66,755:.	0|1:27,9:36:99:0|1:134629969_A_C:244,0,1008:134629969	0|0:29,0:35:99:0|1:134629955_C_T:165,252,1474:134629955	0|1:51,8:59:99:0|1:134629969_A_C:123,0,2215:134629969	0|1:40,39:79:99:0|1:134629969_A_C:1503,0,1543:134629969	0|1:50,46:96:99:0|1:134629969_A_C:1684,0,2044:134629969
-chr12	334342	rs11835796	C	T	4739.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-1.139;DB;DP=491;ExcessHet=9.0714;FS=1.344;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.099;SOR=0.597;VQSLOD=23.72;culprit=MQRankSum;CSQ=T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000343164|protein_coding||9/14|ENST00000343164.4:c.1061-663G>A|||||||||-1||HGNC|11046|YES|CCDS8502.1|||,T|intron_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000445055|protein_coding||7/12|ENST00000445055.2:c.785-663G>A|||||||||-1||HGNC|11046||CCDS53729.1|||,T|upstream_gene_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000539668|processed_transcript|||||||||||745|-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542379|processed_transcript||2/2|ENST00000542379.1:n.220-1942G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000542947|retained_intron||2/2|ENST00000542947.1:n.445-663G>A|||||||||-1||HGNC|11046|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|SLC6A13|ENSG00000010379|Transcript|ENST00000543722|retained_intron||1/2|ENST00000543722.1:n.291-663G>A|||||||||-1||HGNC|11046|||||;cadd_phred=-1;gno_non_neuro_af_all=0.301969;gno_non_neuro_af_nfe=0.283645;gno_non_neuro_nhomalt_all=986;gno_non_neuro_nhomalt_nfe=555;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,120,1800	0/1:11,26:37:99:763,0,246	0/0:41,0:41:99:0,106,1381	0/1:27,25:52:99:693,0,772	0/1:17,26:43:99:720,0,462	0/0:39,0:39:99:0,99,1286	0/1:24,17:41:99:458,0,709	0/0:43,0:43:99:0,99,1390	0/1:27,25:52:99:672,0,782	0/1:25,16:41:99:433,0,715	0/1:24,35:59:99:1018,0,657
-chr12	2033347	rs10848595	C	T	3645.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=2.3;DB;DP=447;ExcessHet=9.0714;FS=3.976;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=51.96;MQRankSum=-2.758;NEGATIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.482;SOR=0.918;VQSLOD=-2.23;culprit=MQ;CSQ=T|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||1314|1||Clone_based_vega_gene||YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.481677;gno_non_neuro_af_nfe=0.556349;gno_non_neuro_nhomalt_all=2670;gno_non_neuro_nhomalt_nfe=2075;highest_impact_order=53;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,115,1395	0/1:24,11:35:99:277,0,637	0/0:42,0:42:91:0,91,1310	0/1:24,23:47:99:638,0,606	0/1:19,22:41:99:591,0,527	0/0:45,0:45:99:0,116,1514	0/1:10,14:24:99:405,0,265	0/0:38,0:38:99:0,100,1232	0/1:26,14:40:99:356,0,673	0/1:19,19:38:99:536,0,426	0/1:22,30:52:99:860,0,505
-chr12	2036141	rs11610387	T	C	3889.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-2.006;DB;DP=477;ExcessHet=9.0714;FS=24.678;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=0.49;SOR=0.465;VQSLOD=16.93;culprit=MQRankSum;CSQ=C|downstream_gene_variant|MODIFIER|LINC00940|ENSG00000235049|Transcript|ENST00000418006|lincRNA|||||||||||2227|-1||HGNC|48634|YES||||,C|downstream_gene_variant|MODIFIER|RP5-1096D14.3|ENSG00000256706|Transcript|ENST00000544163|antisense|||||||||||4108|1||Clone_based_vega_gene||YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.469936;gno_non_neuro_af_nfe=0.558798;gno_non_neuro_nhomalt_all=2687;gno_non_neuro_nhomalt_nfe=2135;highest_impact_order=53;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,111,1405	0/1:17,18:35:99:480,0,486	0/0:38,0:38:99:0,100,1291	0/1:26,30:56:99:840,0,736	0/1:27,13:40:99:332,0,808	0/0:36,0:36:99:0,99,1232	0/1:21,15:36:99:413,0,622	0/0:41,0:41:99:0,108,1391	0/1:24,26:50:99:633,0,684	0/1:22,18:40:99:415,0,644	0/1:31,33:64:99:794,0,854
-chr12	5569271	rs7314794	C	T	4518.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=466;ExcessHet=9.0714;FS=16.139;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=-0.783;SOR=0.967;VQSLOD=21.94;culprit=MQRankSum;CSQ=T|intron_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000423158|protein_coding||1/1|ENST00000423158.3:c.18+27763C>T|||||||||1||HGNC|8023|YES|CCDS44806.1|||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000535299|processed_transcript||1/4|ENST00000535299.1:n.231+27763C>T|||||||||1||HGNC|8023|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|NTF3|ENSG00000185652|Transcript|ENST00000543548|processed_transcript||1/1|ENST00000543548.1:n.208+26773C>T|||||||||1||HGNC|8023|||||;cadd_phred=-1;gno_non_neuro_af_all=0.617836;gno_non_neuro_af_nfe=0.555637;gno_non_neuro_nhomalt_all=4097;gno_non_neuro_nhomalt_nfe=2064;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,105,1405	0/1:15,19:34:99:491,0,400	0/0:37,0:37:99:0,101,1229	0/1:25,23:48:99:610,0,680	0/1:15,25:40:99:749,0,390	0/0:40,0:40:99:0,99,1336	0/1:15,8:23:99:198,0,429	0/0:31,0:31:90:0,90,1350	0/1:24,24:48:99:688,0,685	0/1:27,27:54:99:774,0,765	0/1:31,37:68:99:1026,0,839
-chr12	6744864	rs4764623	G	C	3605.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.314;DB;DP=446;ExcessHet=9.0714;FS=10.015;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=11.9;ReadPosRankSum=-0.191;SOR=0.373;VQSLOD=23.73;culprit=MQRankSum;CSQ=C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000229243|protein_coding|||||||||||2377|-1||HGNC|17195|YES|CCDS8554.1|||,C|intron_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000329858|protein_coding||1/1|ENST00000329858.4:c.-217+209C>G|||||||||-1||HGNC|13307|YES|CCDS8553.1|||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000414226|protein_coding|||||||||||2462|-1||HGNC|17195|||||,C|upstream_gene_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000431922|protein_coding|||||||||||4049|-1||HGNC|13307||CCDS8553.1|||,C|intron_variant&non_coding_transcript_variant|MODIFIER|LPAR5|ENSG00000184574|Transcript|ENST00000540335|processed_transcript||1/2|ENST00000540335.1:n.54+209C>G|||||||||-1||HGNC|13307|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000540513|processed_transcript|||||||||||2377|-1||HGNC|17195|||||,C|downstream_gene_variant|MODIFIER|ACRBP|ENSG00000111644|Transcript|ENST00000542357|processed_transcript|||||||||||2812|-1||HGNC|17195|||||;cadd_phred=-1;gno_non_neuro_af_all=0.536383;gno_non_neuro_af_nfe=0.568792;gno_non_neuro_nhomalt_all=3155;gno_non_neuro_nhomalt_nfe=2202;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,99,1305	0/1:17,7:24:99:172,0,494	0/0:37,0:37:99:0,102,1530	0/1:19,27:46:99:781,0,467	0/1:27,20:47:99:553,0,797	0/0:31,0:31:90:0,90,1350	0/1:15,22:37:99:559,0,409	0/0:37,0:37:99:0,100,1230	0/1:29,21:50:99:560,0,835	0/1:21,11:32:99:276,0,631	0/1:39,28:67:99:722,0,1068
-chr12	8335722	rs11043797	A	T	3602.38	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.355;DB;DP=476;ExcessHet=9.0714;FS=3.734;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60.49;MQRankSum=0;QD=16.37;ReadPosRankSum=0.309;SOR=0.966;VQSLOD=3.93;culprit=MQRankSum;CSQ=T|downstream_gene_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000359286|protein_coding|||||||||||3080|1||HGNC|32281|YES|CCDS31737.1|||,T|intron_variant|MODIFIER|ZNF705A|ENSG00000196946|Transcript|ENST00000398526|protein_coding||2/2|ENST00000398526.2:c.274-5346A>T|||||||||1|cds_start_NF|HGNC|32281|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000454799|antisense||1/6|ENST00000454799.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000456135|antisense||1/3|ENST00000456135.2:n.544+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000541558|antisense||1/7|ENST00000541558.1:n.484+2374A>T|||||||||1||HGNC|21644|||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|FAM66C|ENSG00000226711|Transcript|ENST00000544214|antisense||1/5|ENST00000544214.1:n.531+2374A>T|||||||||1||HGNC|21644|YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.138584;gno_non_neuro_af_nfe=0.128167;gno_non_neuro_nhomalt_all=193;gno_non_neuro_nhomalt_nfe=100;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,99,1485	0/1:19,8:27:99:231,0,672	0/0:30,0:30:63:0,63,945	0/1:10,13:23:99:506,0,701	0/1:21,12:33:99:483,0,707	0/0:49,0:49:90:0,90,1350	0/1:12,14:26:99:388,0,677	0/0:17,0:17:51:0,51,744	0/1:24,13:37:99:537,0,936	0/1:13,11:24:99:551,0,1013	0/1:29,21:50:99:924,0,1000
-chr12	9739997	rs7955007	C	A	4151.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.066;DB;DP=433;ExcessHet=9.0714;FS=0.418;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.399;SOR=0.665;VQSLOD=23.76;culprit=MQRankSum;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.466522;gno_non_neuro_af_nfe=0.493146;gno_non_neuro_nhomalt_all=2305;gno_non_neuro_nhomalt_nfe=1620;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,99,1197	0/1:20,16:36:99:448,0,576	0/0:35,0:35:99:0,99,1485	0/1:23,24:47:99:669,0,638	0/1:17,15:32:99:426,0,385	0/0:27,0:27:81:0,81,919	0/1:14,18:32:99:505,0,380	0/0:38,0:38:99:0,108,1451	0/1:25,24:49:99:640,0,718	0/1:19,17:36:99:473,0,551	0/1:29,37:66:99:1008,0,798
-chr12	9740839	rs7137213	G	A	4647.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.978;DB;DP=463;ExcessHet=9.0714;FS=0;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=-0.321;SOR=0.68;VQSLOD=23.84;culprit=MQRankSum;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.395541;gno_non_neuro_af_nfe=0.452966;gno_non_neuro_nhomalt_all=1773;gno_non_neuro_nhomalt_nfe=1356;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,101,1445	0/1:19,15:34:99:419,0,518	0/0:39,0:39:99:0,111,1665	0/1:18,26:44:99:751,0,493	0/1:22,19:41:99:537,0,631	0/0:41,0:41:99:0,105,1366	0/1:13,24:37:99:723,0,321	0/0:33,0:33:99:0,99,1147	0/1:18,19:37:99:547,0,513	0/1:25,16:41:99:415,0,731	0/1:30,43:73:99:1273,0,801
-chr12	9745571	rs4763635	A	G	4058.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.912;DB;DP=489;ExcessHet=9.0714;FS=10.836;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-0.08;SOR=1.147;VQSLOD=23.83;culprit=MQRankSum;CSQ=G|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||1576|-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.446882;gno_non_neuro_af_nfe=0.493154;gno_non_neuro_nhomalt_all=2176;gno_non_neuro_nhomalt_nfe=1624;highest_impact_order=53;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,100,1277	0/1:9,20:29:99:558,0,227	0/0:37,0:37:99:0,99,1485	0/1:17,26:43:99:750,0,462	0/1:24,21:45:99:575,0,689	0/0:37,0:37:99:0,100,1212	0/1:14,15:29:99:409,0,390	0/0:34,0:34:78:0,78,1113	0/1:38,28:66:99:564,0,1123	0/1:31,25:56:99:516,0,874	0/1:41,33:74:99:704,0,1202
-chr12	9746600	rs10771918	T	C	5327.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.035;DB;DP=495;ExcessHet=9.0714;FS=0;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=0.73;SOR=0.682;VQSLOD=23.48;culprit=MQRankSum;CSQ=C|downstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||547|-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.446344;gno_non_neuro_af_nfe=0.493239;gno_non_neuro_nhomalt_all=2177;gno_non_neuro_nhomalt_nfe=1629;highest_impact_order=53;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,105,1575	0/1:20,20:40:99:555,0,555	0/0:26,0:26:72:0,72,894	0/1:24,27:51:99:785,0,660	0/1:16,20:36:99:567,0,428	0/0:35,0:35:99:0,99,1272	0/1:15,15:30:99:411,0,411	0/0:39,0:39:99:0,99,1356	0/1:31,36:67:99:1050,0,876	0/1:30,33:63:99:933,0,854	0/1:33,36:69:99:1044,0,914
-chr12	9747513	rs2058428	G	A	17315.7	PASS	AC=7;AF=0.318;AN=22;DB;DP=454;ExcessHet=3.0103;FS=0;InbreedingCoeff=nan;MLEAC=7;MLEAF=0.318;MQ=60.05;QD=30.83;SOR=0.831;VQSLOD=3.44;culprit=QD;CSQ=A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*357C>T||1082/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.586462;gno_non_neuro_af_nfe=0.570162;gno_non_neuro_nhomalt_all=3709;gno_non_neuro_nhomalt_nfe=2184;genic;highest_impact_order=36;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0|0:0,0:43:99:1|1:9747513_GTGC_G:1935,1935,1935:9747513	0/1:0,8:18:99:.:.:671,417,393:.	0|0:0,0:43:99:1|1:9747513_GTGC_G:1935,1935,1935:9747513	0/1:0,17:37:99:.:.:1356,829,786:.	0/1:0,25:43:99:.:.:1577,806,740:.	0|0:0,0:42:99:1|1:9747513_GTGC_G:1891,1891,1891:9747513	0/1:0,12:29:99:.:.:1049,688,652:.	0|0:0,0:36:99:1|1:9747513_GTGC_G:1598,1598,1598:9747513	0/1:0,33:54:99:.:.:1826,858,760:.	0/1:0,28:47:99:.:.:1542,785,711:.	0/1:0,28:55:99:.:.:1899,1096,1051:.
-chr12	9747557	rs2058427	T	A	3876.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.22;DB;DP=435;ExcessHet=9.0714;FS=6.421;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.122;SOR=1.035;VQSLOD=24.26;culprit=MQRankSum;CSQ=A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*313A>T||1038/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.471313;gno_non_neuro_af_nfe=0.492262;gno_non_neuro_nhomalt_all=2348;gno_non_neuro_nhomalt_nfe=1613;genic;highest_impact_order=36;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,99,1485	0/1:12,8:20:99:207,0,357	0/0:47,0:47:99:0,109,1528	0/1:21,16:37:99:444,0,594	0/1:24,19:43:99:511,0,675	0/0:37,0:37:96:0,96,1440	0/1:14,12:26:99:339,0,387	0/0:36,0:36:99:0,99,1485	0/1:19,31:50:99:880,0,510	0/1:22,19:41:99:537,0,631	0/1:25,35:60:99:976,0,677
-chr12	9747676	rs2058426	G	A	4642.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.615;DB;DP=483;ExcessHet=9.0714;FS=8.229;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=0.796;SOR=0.422;VQSLOD=23.96;culprit=MQRankSum;CSQ=A|3_prime_UTR_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|6/6||ENST00000229402.3:c.*194C>T||919/1448|||||||-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.474057;gno_non_neuro_af_nfe=0.495801;gno_non_neuro_nhomalt_all=2374;gno_non_neuro_nhomalt_nfe=1634;genic;highest_impact_order=36;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,105,1271	0/1:23,10:33:99:249,0,611	0/0:47,0:47:99:0,109,1528	0/1:24,13:37:99:331,0,673	0/1:20,25:45:99:693,0,550	0/0:37,0:37:99:0,99,1391	0/1:15,18:33:99:527,0,353	0/0:35,0:35:99:0,102,1167	0/1:16,41:57:99:1234,0,384	0/1:28,25:53:99:665,0,793	0/1:36,34:70:99:961,0,1040
-chr12	9748572	rs2241005	T	C	5259.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.149;DB;DP=488;ExcessHet=9.0714;FS=19.998;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-0.324;SOR=0.71;VQSLOD=20.5;culprit=MQRankSum;CSQ=C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.531-555A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.490104;gno_non_neuro_af_nfe=0.497058;gno_non_neuro_nhomalt_all=2536;gno_non_neuro_nhomalt_nfe=1645;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:34,0:34:78:0,78,1103	0/1:11,30:41:99:885,0,225	0/0:35,0:35:99:0,102,1226	0/1:20,11:31:99:259,0,592	0/1:31,21:52:99:574,0,919	0/0:35,0:35:99:0,99,1232	0/1:20,24:44:99:680,0,541	0/0:35,0:35:99:0,99,1485	0/1:24,32:56:99:942,0,656	0/1:21,26:47:99:728,0,587	0/1:35,42:77:99:1209,0,974
-chr12	9749543	rs985913	G	A	4909.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.812;DB;DP=526;ExcessHet=9.0714;FS=3.932;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.3;ReadPosRankSum=-0.296;SOR=0.879;VQSLOD=23.49;culprit=MQRankSum;CSQ=A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+1099C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.321233;gno_non_neuro_af_nfe=0.362097;gno_non_neuro_nhomalt_all=1192;gno_non_neuro_nhomalt_nfe=872;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:37,0:37:99:.:.:0,99,1351:.	0|1:21,18:39:99:1|0:9749535_C_T:488,0,807:9749535	0/0:40,0:40:99:.:.:0,105,1322:.	0/1:21,33:54:99:.:.:944,0,782:.	0|1:20,14:34:99:1|0:9749535_C_T:384,0,787:9749535	0/0:37,0:37:99:.:.:0,99,1485:.	0|1:20,22:42:99:1|0:9749535_C_T:638,0,763:9749535	0/0:41,0:41:99:.:.:0,108,1426:.	0|1:37,26:63:99:1|0:9749535_C_T:711,0,1466:9749535	0/1:29,30:59:99:.:.:841,0,1149:.	0|1:43,35:78:99:1|0:9749535_C_T:921,0,1680:9749535
-chr12	9749682	rs985912	T	C	5313.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.239;DB;DP=496;ExcessHet=9.0714;FS=2.311;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-0.203;SOR=0.828;VQSLOD=23.45;culprit=MQRankSum;CSQ=C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+960A>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.4901;gno_non_neuro_af_nfe=0.496908;gno_non_neuro_nhomalt_all=2537;gno_non_neuro_nhomalt_nfe=1643;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,102,1226	0/1:16,20:36:99:541,0,428	0/0:40,0:40:99:0,105,1322	0/1:18,27:45:99:740,0,490	0/1:13,20:33:99:596,0,351	0/0:35,0:35:99:0,99,1231	0/1:10,20:30:99:556,0,238	0/0:41,0:41:99:0,108,1426	0/1:34,34:68:99:977,0,972	0/1:26,29:55:99:833,0,732	0/1:37,39:76:99:1088,0,1058
-chr12	9749726	rs985911	G	T	4917.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.299;DB;DP=498;ExcessHet=9.0714;FS=0.385;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-0.021;SOR=0.67;VQSLOD=23.47;culprit=MQRankSum;CSQ=T|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||5/5|ENST00000229402.3:c.530+916C>A|||||||||-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.490522;gno_non_neuro_af_nfe=0.497572;gno_non_neuro_nhomalt_all=2538;gno_non_neuro_nhomalt_nfe=1647;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,102,1226	0/1:15,14:29:99:400,0,399	0/0:37,0:37:99:0,102,1415	0/1:22,25:47:99:667,0,593	0/1:15,19:34:99:557,0,384	0/0:35,0:35:99:0,99,1231	0/1:12,21:33:99:630,0,298	0/0:40,0:40:99:0,99,1316	0/1:38,28:66:99:765,0,1110	0/1:27,32:59:99:905,0,760	0/1:43,37:80:99:1011,0,1208
-chr12	9752576	rs55659351;rs67712680	TAA	T	15028.7	VQSRTrancheINDEL99.00to99.90	AC=7;AF=0.318;AN=22;BaseQRankSum=1.64;DB;DP=435;ExcessHet=3.0103;FS=0;InbreedingCoeff=nan;MLEAC=7;MLEAF=0.318;MQ=60.07;MQRankSum=0.371;NEGATIVE_TRAIN_SITE;QD=33.56;ReadPosRankSum=1.73;SOR=1.108;VQSLOD=-0.6292;culprit=MQRankSum;CSQ=-|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||2/5|ENST00000229402.3:c.185-141_185-140del|||||||||-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.468831;gno_non_neuro_af_nfe=0.507347;gno_non_neuro_nhomalt_all=1899;gno_non_neuro_nhomalt_nfe=1416;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:0,0:42:99:1868,1868,1868	0/1:0,10:24:99:845,351,293	0/0:0,0:33:99:1444,1444,1444	0/1:0,10:24:99:910,363,291	0/1:0,20:38:99:1405,470,357	0/0:0,0:31:93:1395,1395,1395	0/1:1,17:27:99:910,215,155	0/0:1,0:30:80:1255,1257,1264	0/1:0,23:50:99:1848,704,556	0/1:0,20:40:99:1493,523,404	0/1:0,18:44:99:1619,649,537
-chr12	9755905	rs4763657	G	A	4896.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.411;DB;DP=474;ExcessHet=9.0714;FS=11.705;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60.03;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-0.815;SOR=1.213;VQSLOD=7.16;culprit=MQRankSum;CSQ=A|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1710C>T|||||||||-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.371155;gno_non_neuro_af_nfe=0.369347;gno_non_neuro_nhomalt_all=1482;gno_non_neuro_nhomalt_nfe=897;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:42,0:42:99:.:.:0,104,1381:.	0|1:13,28:41:99:1|0:9755904_C_T:790,0,427:9755904	0/0:32,0:32:90:.:.:0,90,1350:.	0|1:20,29:49:99:1|0:9755904_C_T:803,0,774:9755904	0|1:16,29:45:99:1|0:9755904_C_T:823,0,585:9755904	0/0:40,0:40:99:.:.:0,99,1352:.	0|1:15,17:32:99:1|0:9755904_C_T:475,0,579:9755904	0/0:42,0:42:99:.:.:0,111,1665:.	0/1:24,24:48:99:.:.:679,0,590:.	0|1:23,23:46:99:1|0:9755904_C_T:641,0,886:9755904	0|1:30,25:55:99:1|0:9755904_C_T:703,0,1184:9755904
-chr12	9756021	rs148830030;rs56793467	C	CTATT	4896.38	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=463;ExcessHet=9.0714;FS=2.879;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60.03;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=20.84;ReadPosRankSum=-0.093;SOR=0.847;VQSLOD=10.46;culprit=MQRankSum;CSQ=TATT|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.86-1830_86-1827dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.358611;gno_non_neuro_af_nfe=0.357388;gno_non_neuro_nhomalt_all=1344;gno_non_neuro_nhomalt_nfe=823;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,99,1272	0/1:11,17:28:99:716,0,495	0/0:30,0:30:41:0,41,914	0/1:17,18:35:99:681,0,831	0/1:13,16:29:99:662,0,627	0/0:40,0:40:99:0,99,1352	0/1:12,14:26:99:534,0,600	0/0:37,0:37:99:0,102,1301	0/1:24,17:41:99:618,0,1173	0/1:15,20:35:99:740,0,719	0/1:17,24:41:99:963,0,745
-chr12	9759244	rs10667765	T	TTA	2615.38	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.412;DB;DP=333;ExcessHet=9.0714;FS=16.613;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=59.48;MQRankSum=0;QD=14.14;ReadPosRankSum=-0.403;SOR=0.218;VQSLOD=4.79;culprit=MQRankSum;CSQ=TA|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+1105_85+1106dup|||||||||-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.460276;gno_non_neuro_af_nfe=0.480533;gno_non_neuro_nhomalt_all=1430;gno_non_neuro_nhomalt_nfe=1075;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:30,0:30:81:.:.:0,81,1215:.	0/1:10,8:18:99:.:.:235,0,358:.	0/0:28,0:28:84:.:.:0,84,933:.	0/1:13,10:23:99:.:.:291,0,499:.	0/1:19,13:32:99:.:.:373,0,688:.	0/0:25,0:25:50:.:.:0,50,789:.	0|1:13,13:26:99:0|1:9759244_T_TTA:397,0,480:9759244	0/0:26,0:26:72:.:.:0,72,1080:.	0/1:10,15:25:99:.:.:462,0,309:.	0/1:7,12:19:99:.:.:395,0,225:.	0|1:25,17:42:99:0|1:9759244_T_TTA:480,0,872:9759244
-chr12	9759465	rs4763675	A	C	3293.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.207;DB;DP=411;ExcessHet=9.0714;FS=3.51;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-0.122;SOR=0.517;VQSLOD=23.24;culprit=MQRankSum;CSQ=C|intron_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding||1/5|ENST00000229402.3:c.85+886T>G|||||||||-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.378239;gno_non_neuro_af_nfe=0.421036;gno_non_neuro_nhomalt_all=1567;gno_non_neuro_nhomalt_nfe=1108;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:40,0:40:91:0,91,1252	0/1:9,13:22:99:386,0,247	0/0:30,0:30:81:0,81,1215	0/1:19,19:38:99:526,0,516	0/1:29,14:43:99:357,0,858	0/0:32,0:32:46:0,46,943	0/1:12,15:27:99:395,0,326	0/0:44,0:44:73:0,73,1340	0/1:19,17:36:99:461,0,542	0/1:22,16:38:99:432,0,607	0/1:31,28:59:99:754,0,845
-chr12	9761465	rs4763678	C	G	3228.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.651;DB;DP=393;ExcessHet=9.0714;FS=0.939;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=52.36;MQRankSum=-1.34;NEGATIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=0.243;SOR=0.732;VQSLOD=-2.365;culprit=MQ;CSQ=G|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||983|-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.380015;gno_non_neuro_af_nfe=0.423276;gno_non_neuro_nhomalt_all=1658;gno_non_neuro_nhomalt_nfe=1180;highest_impact_order=51;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:30,0:30:87:0,87,1305	0/1:22,14:36:99:359,0,622	0/0:32,0:32:90:0,90,1042	0/1:17,5:22:99:108,0,515	0/1:22,20:42:99:568,0,604	0/0:34,0:34:99:0,102,1132	0/1:17,15:32:99:424,0,495	0/0:29,0:29:84:0,84,988	0/1:30,24:54:99:672,0,864	0/1:23,16:39:99:439,0,652	0/1:16,23:39:99:676,0,434
-chr12	9763589	rs7302021	C	T	4720.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=1.07;DB;DP=489;ExcessHet=9.0714;FS=0;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=59.98;MQRankSum=0;QD=14.01;ReadPosRankSum=-0.276;SOR=0.678;VQSLOD=7.72;culprit=MQRankSum;CSQ=T|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3107|-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.37913;gno_non_neuro_af_nfe=0.422091;gno_non_neuro_nhomalt_all=1660;gno_non_neuro_nhomalt_nfe=1181;highest_impact_order=51;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:42,0:42:99:.:.:0,120,1800:.	0/1:15,17:32:99:.:.:495,0,405:.	0/0:35,0:35:99:.:.:0,99,1201:.	0/1:17,28:45:99:.:.:768,0,456:.	0/1:21,20:41:99:.:.:532,0,607:.	0/0:38,0:38:99:.:.:0,100,1242:.	0/1:22,18:40:99:.:.:506,0,604:.	0/0:37,0:37:99:.:.:0,108,1301:.	0|1:27,29:56:99:0|1:9763589_C_T:836,0,1048:9763589	0/1:28,24:52:99:.:.:658,0,817:.	0/1:37,34:71:99:.:.:943,0,1033:.
-chr12	9763737	rs7301291	G	A	5076.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.508;DB;DP=448;ExcessHet=9.0714;FS=7;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=59.78;MQRankSum=0;QD=16.81;ReadPosRankSum=0.294;SOR=0.79;VQSLOD=6.83;culprit=MQRankSum;CSQ=A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||3255|-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.378565;gno_non_neuro_af_nfe=0.421863;gno_non_neuro_nhomalt_all=1653;gno_non_neuro_nhomalt_nfe=1176;highest_impact_order=51;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,102,1320	0/1:11,22:33:99:641,0,274	0/0:34,0:34:99:0,99,1142	0/1:18,22:40:99:614,0,471	0/1:24,28:52:99:796,0,658	0/0:36,0:36:99:0,100,1240	0/1:7,26:33:99:755,0,144	0/0:39,0:39:99:0,105,1320	0/1:22,19:41:99:537,0,541	0/1:15,26:41:99:751,0,308	0/1:27,35:62:99:1000,0,562
-chr12	9764897	rs139642020	G	A	4206.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.64;DB;DP=450;ExcessHet=9.0714;FS=0.867;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=58.53;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.7;ReadPosRankSum=-0.967;SOR=0.626;VQSLOD=4.92;culprit=MQRankSum;CSQ=A|upstream_gene_variant|MODIFIER|KLRB1|ENSG00000111796|Transcript|ENST00000229402|protein_coding|||||||||||4415|-1||HGNC|6373|YES|CCDS8601.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.379082;gno_non_neuro_af_nfe=0.422317;gno_non_neuro_nhomalt_all=1658;gno_non_neuro_nhomalt_nfe=1178;highest_impact_order=51;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,102,1216	0/1:13,13:26:99:354,0,364	0/0:37,0:37:99:0,99,1401	0/1:24,20:44:99:532,0,632	0/1:19,22:41:99:621,0,536	0/0:38,0:38:80:0,80,1211	0/1:20,16:36:99:403,0,577	0/0:26,0:26:53:0,53,824	0/1:25,23:48:99:635,0,714	0/1:21,22:43:99:526,0,537	0/1:29,40:69:99:1153,0,770
-chr12	9769429	rs10546600;rs142555042	CAGAG	C	2238.36	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.878;DB;DP=341;ExcessHet=9.0714;FS=0.621;InbreedingCoeff=-0.5455;MLEAC=8;MLEAF=0.364;MQ=59.59;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=-0.082;SOR=0.781;VQSLOD=6.29;culprit=MQRankSum;CSQ=-|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.379867;gno_non_neuro_af_nfe=0.42454;gno_non_neuro_nhomalt_all=1287;gno_non_neuro_nhomalt_nfe=922;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:49,0:49:92:0,92,1321	0/1:9,10:19:99:383,0,345	0/0:41,0:41:5:0,5,977	0/1:9,6:15:99:225,0,349	0/1:11,7:18:99:251,0,441	0/0:40,0:40:0:0,0,722	0/1:15,12:27:99:449,0,581	0/0:40,0:40:16:0,16,849	0/1:15,9:24:99:333,0,571	0/1:11,6:17:99:209,0,444	0/1:17,11:28:99:400,0,678
-chr12	9779878	rs115368398	T	A	6771.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=1.15;DB;DP=448;ExcessHet=9.0714;FS=5.097;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=59.98;MQRankSum=0;QD=21.29;ReadPosRankSum=0.493;SOR=0.473;VQSLOD=7.39;culprit=MQRankSum;CSQ=A|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3054|-1||HGNC|47663|YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.377381;gno_non_neuro_af_nfe=0.419781;gno_non_neuro_nhomalt_all=1544;gno_non_neuro_nhomalt_nfe=1098;highest_impact_order=51;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:35,0:35:99:.:.:0,102,1530:.	0|1:8,10:18:99:0|1:9779867_CTT_C:428,0,649:9779867	0/0:30,0:30:81:.:.:0,81,1215:.	0|1:18,25:43:99:0|1:9779867_CTT_C:996,0,1559:9779867	0|1:19,23:42:99:0|1:9779867_CTT_C:903,0,1836:9779867	0/0:35,0:35:93:.:.:0,93,1395:.	0|1:19,15:34:99:0|1:9779867_CTT_C:579,0,1774:9779867	0/0:28,0:28:69:.:.:0,69,1035:.	0|1:25,24:49:99:0|1:9779867_CTT_C:678,0,706:9779867	0|1:22,35:57:99:0|1:9779867_CTT_C:1457,0,1942:9779867	0|1:31,44:75:99:0|1:9779867_CTT_C:1748,0,2679:9779867
-chr12	9780206	rs4486710	C	T	4786.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=463;ExcessHet=9.0714;FS=1.317;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=56.16;MQRankSum=0;QD=14.86;ReadPosRankSum=-0.038;SOR=0.615;VQSLOD=-0.0261;culprit=MQ;CSQ=T|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3382|-1||HGNC|47663|YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.379998;gno_non_neuro_af_nfe=0.422834;gno_non_neuro_nhomalt_all=1668;gno_non_neuro_nhomalt_nfe=1190;highest_impact_order=51;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,102,1261	0/1:15,18:33:99:506,0,422	0/0:33,0:33:90:0,90,1350	0/1:23,21:44:99:577,0,637	0/1:30,29:59:99:831,0,855	0/0:37,0:37:99:0,105,1575	0/1:11,16:27:99:475,0,301	0/0:32,0:32:90:0,90,1350	0/1:25,35:60:99:996,0,689	0/1:21,26:47:99:742,0,578	0/1:28,24:52:99:677,0,796
-chr12	9780577	rs72656628	A	G	3358.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-1.863;DB;DP=433;ExcessHet=9.0714;FS=10.22;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=53.72;MQRankSum=-1.397;NEGATIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-0.118;SOR=0.395;VQSLOD=-1.207;culprit=MQ;CSQ=G|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||3753|-1||HGNC|47663|YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.379642;gno_non_neuro_af_nfe=0.422698;gno_non_neuro_nhomalt_all=1670;gno_non_neuro_nhomalt_nfe=1189;highest_impact_order=51;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,102,1261	0/1:21,19:40:99:521,0,565	0/0:40,0:40:99:0,104,1320	0/1:16,19:35:99:525,0,451	0/1:19,23:42:99:633,0,534	0/0:36,0:36:99:0,99,1130	0/1:19,11:30:99:283,0,525	0/0:35,0:35:93:0,93,1395	0/1:24,20:44:99:483,0,702	0/1:22,21:43:99:490,0,616	0/1:31,20:51:99:441,0,923
-chr12	9780843	rs79677075	T	C	3731.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.793;DB;DP=448;ExcessHet=9.0714;FS=13.633;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=49.22;MQRankSum=-0.287;NEGATIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=0.147;SOR=0.321;VQSLOD=-2.572;culprit=MQ;CSQ=C|upstream_gene_variant|MODIFIER|RNU6-700P|ENSG00000212345|Transcript|ENST00000391043|snRNA|||||||||||4019|-1||HGNC|47663|YES||||;cadd_phred=11;gno_non_neuro_af_all=0.378809;gno_non_neuro_af_nfe=0.421603;gno_non_neuro_nhomalt_all=1655;gno_non_neuro_nhomalt_nfe=1174;highest_impact_order=51;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,99,1346	0/1:20,13:33:99:352,0,593	0/0:36,0:36:99:0,102,1246	0/1:25,16:41:99:407,0,734	0/1:11,21:32:99:608,0,286	0/0:49,0:49:99:0,114,1585	0/1:17,19:36:99:519,0,483	0/0:36,0:36:99:0,99,1485	0/1:27,21:48:99:566,0,770	0/1:20,18:38:99:481,0,561	0/1:29,31:60:99:816,0,811
-chr12	9997789	rs2012290	A	T	4677.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=472;ExcessHet=9.0714;FS=0;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=59.39;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-0.367;SOR=0.71;VQSLOD=6.27;culprit=MQRankSum;CSQ=T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279544|protein_coding|||||||||||183|1||HGNC|13342|YES|CCDS41750.1|||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000279545|nonsense_mediated_decay|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000324214|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000354855|protein_coding|||||||||||183|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000535631|nonsense_mediated_decay|||||||||||198|1|cds_start_NF|HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000537723|protein_coding|||||||||||533|1||HGNC|13342|||||,T|downstream_gene_variant|MODIFIER|KLRF1|ENSG00000150045|Transcript|ENST00000545196|nonsense_mediated_decay|||||||||||533|1||HGNC|13342|||||;cadd_phred=-1;gno_non_neuro_af_all=0.243354;gno_non_neuro_af_nfe=0.298999;gno_non_neuro_nhomalt_all=721;gno_non_neuro_nhomalt_nfe=601;highest_impact_order=53;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:40,0:40:96:0,96,1301	0/1:18,18:36:99:507,0,517	0/0:39,0:39:99:0,103,1277	0/1:19,24:43:99:705,0,521	0/1:22,15:37:99:410,0,613	0/0:31,0:31:90:0,90,1072	0/1:14,20:34:99:593,0,384	0/0:31,0:31:90:0,90,1350	0/1:35,32:67:99:910,0,1015	0/1:28,27:55:99:774,0,783	0/1:31,28:59:99:796,0,900
-chr12	10003185	rs113230156	C	T	4666.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=1.05;DB;DP=470;ExcessHet=9.0714;FS=9.244;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60.03;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=-0.293;SOR=1.101;VQSLOD=7.49;culprit=MQRankSum;CSQ=T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000228438|protein_coding|||||||||||2398|-1||HGNC|2053|YES|CCDS8605.1|||,T|downstream_gene_variant|MODIFIER|CLEC2B|ENSG00000110852|Transcript|ENST00000538152|protein_coding|||||||||||2547|-1||HGNC|2053|||||;cadd_phred=-1;gno_non_neuro_af_all=0.0481495;gno_non_neuro_af_nfe=0.0645566;gno_non_neuro_nhomalt_all=30;gno_non_neuro_nhomalt_nfe=26;highest_impact_order=53;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,101,1250	0/1:16,21:37:99:619,0,409	0/0:42,0:42:99:0,100,1302	0/1:20,20:40:99:575,0,550	0/1:17,14:31:99:393,0,498	0/0:41,0:41:99:0,118,1440	0/1:24,27:51:99:736,0,571	0/0:21,0:21:60:0,60,710	0/1:25,25:50:99:689,0,684	0/1:16,17:33:99:482,0,446	0/1:41,42:83:99:1190,0,1093
-chr12	10177037	rs1979593	G	A	5246.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=503;ExcessHet=9.0714;FS=1.729;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-0.345;SOR=0.772;VQSLOD=23.72;culprit=MQRankSum;CSQ=A|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-133L14.5|ENSG00000256803|Transcript|ENST00000544225|antisense||2/2|ENST00000544225.1:n.248+3477C>T|||||||||-1||Clone_based_vega_gene||YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.304713;gno_non_neuro_af_nfe=0.348498;gno_non_neuro_nhomalt_all=1069;gno_non_neuro_nhomalt_nfe=821;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,99,1485	0/1:21,22:43:99:595,0,600	0/0:50,0:50:91:0,91,1549	0/1:23,23:46:99:641,0,850	0/1:18,21:39:99:613,0,474	0/0:31,0:31:90:0,90,1350	0/1:15,13:28:99:368,0,591	0/0:28,0:28:75:0,75,1125	0/1:36,30:66:99:844,0,1379	0/1:32,35:67:99:1012,0,1218	0/1:26,40:66:99:1191,0,705
-chr16	80636220	rs12932528	A	T	4857.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.408;DB;DP=457;ExcessHet=9.0714;FS=2.414;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=59.96;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.505;SOR=0.831;VQSLOD=8.64;culprit=MQRankSum;CSQ=T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1593|-1||HGNC|23030|||||,T|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*2065T>A||3742/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.180142;gno_non_neuro_af_nfe=0.166176;gno_non_neuro_nhomalt_all=396;gno_non_neuro_nhomalt_nfe=214;genic;highest_impact_order=36;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,99,1221	0/1:13,20:33:99:597,0,308	0/0:41,0:41:99:0,101,1371	0/1:20,23:43:99:660,0,546	0/1:6,25:31:99:766,0,115	0/0:26,0:26:72:0,72,873	0/1:23,19:42:99:535,0,648	0/0:39,0:39:99:0,102,1420	0/1:32,33:65:99:911,0,907	0/1:23,21:44:99:568,0,632	0/1:28,30:58:99:838,0,789
-chr16	80636297	rs33943240	C	G	4331.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=1.31;DB;DP=457;ExcessHet=9.0714;FS=4.295;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=59.96;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-0.406;SOR=0.84;VQSLOD=8.59;culprit=MQRankSum;CSQ=G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||1516|-1||HGNC|23030|||||,G|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1988G>C||3665/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.219375;gno_non_neuro_af_nfe=0.169686;gno_non_neuro_nhomalt_all=618;gno_non_neuro_nhomalt_nfe=219;genic;highest_impact_order=36;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,99,1291	0/1:10,18:28:99:541,0,263	0/0:35,0:35:99:0,100,1201	0/1:14,25:39:99:711,0,359	0/1:14,22:36:99:657,0,368	0/0:29,0:29:87:0,87,958	0/1:21,21:42:99:544,0,534	0/0:35,0:35:99:0,99,1485	0/1:33,20:53:99:536,0,826	0/1:30,20:50:99:519,0,688	0/1:39,31:70:99:841,0,915
-chr16	80636940	rs74028318	G	A	5437.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.786;DB;DP=495;ExcessHet=9.0714;FS=0.388;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60.16;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=0.582;SOR=0.668;VQSLOD=7.82;culprit=MQRankSum;CSQ=A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|downstream_gene_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding|||||||||||873|-1||HGNC|23030|||||,A|3_prime_UTR_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding|7/7||ENST00000570137.2:c.*1345C>T||3022/8159|||||||-1||HGNC|23030|YES|CCDS32493.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.170014;gno_non_neuro_af_nfe=0.156388;gno_non_neuro_nhomalt_all=356;gno_non_neuro_nhomalt_nfe=187;genic;highest_impact_order=36;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,99,1485	0/1:13,18:31:99:530,0,359	0/0:37,0:37:99:0,105,1195	0/1:22,30:52:99:856,0,588	0/1:25,25:50:99:719,0,691	0/0:35,0:35:99:0,99,1311	0/1:10,27:37:99:801,0,212	0/0:41,0:41:99:0,109,1400	0/1:32,36:68:99:1025,0,903	0/1:29,19:48:99:491,0,814	0/1:26,35:61:99:1033,0,710
-chr16	80639833	rs74862994	T	G	6796.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.055;DB;DP=482;ExcessHet=9.0714;FS=0.399;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;QD=20.66;ReadPosRankSum=0.352;SOR=0.704;VQSLOD=22.13;culprit=MQRankSum;CSQ=G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1390A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1390A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.222752;gno_non_neuro_af_nfe=0.17895;gno_non_neuro_nhomalt_all=592;gno_non_neuro_nhomalt_nfe=223;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:38,0:38:99:.:.:0,101,1485:.	0|1:16,18:34:99:0|1:80639833_T_G:705,0,649:80639833	0/0:38,0:38:99:.:.:0,100,1320:.	0|1:27,23:50:99:0|1:80639833_T_G:884,0,1064:80639833	0|1:19,19:38:99:0|1:80639833_T_G:741,0,1019:80639833	0/0:35,0:35:99:.:.:0,99,1232:.	0|1:22,23:45:99:0|1:80639833_T_G:942,0,1207:80639833	0/0:41,0:41:99:.:.:0,111,1665:.	0|1:31,31:62:99:0|1:80639833_T_G:1197,0,1475:80639833	0|1:14,30:44:99:0|1:80639833_T_G:1215,0,612:80639833	0|1:28,28:56:99:0|1:80639833_T_G:1130,0,1331:80639833
-chr16	80639836	rs77086080	G	A	6787.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.752;DB;DP=483;ExcessHet=9.0714;FS=0.833;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;QD=20.57;ReadPosRankSum=0.022;SOR=0.74;VQSLOD=22.1;culprit=MQRankSum;CSQ=A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1393C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1393C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.190708;gno_non_neuro_af_nfe=0.178351;gno_non_neuro_nhomalt_all=423;gno_non_neuro_nhomalt_nfe=222;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:38,0:38:99:.:.:0,101,1485:.	0|1:16,18:34:99:0|1:80639833_T_G:705,0,649:80639833	0/0:38,0:38:99:.:.:0,100,1320:.	0|1:27,23:50:99:0|1:80639833_T_G:881,0,1096:80639833	0|1:19,19:38:99:0|1:80639833_T_G:738,0,1050:80639833	0/0:35,0:35:99:.:.:0,99,1232:.	0|1:21,24:45:99:0|1:80639833_T_G:945,0,1176:80639833	0/0:41,0:41:99:.:.:0,111,1665:.	0|1:31,30:61:99:0|1:80639833_T_G:1191,0,1529:80639833	0|1:15,30:45:99:0|1:80639833_T_G:1215,0,612:80639833	0|1:28,29:57:99:0|1:80639833_T_G:1130,0,1331:80639833
-chr16	80639841	rs4517811	G	A	6724.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=479;ExcessHet=9.0714;FS=0;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;QD=20.63;ReadPosRankSum=0.07;SOR=0.693;VQSLOD=22.19;culprit=MQRankSum;CSQ=A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||7/7|ENST00000562812.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||7/7|ENST00000563890.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||7/7|ENST00000566173.1:c.1366-1398C>T|||||||||-1||HGNC|23030|||||,A|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||6/6|ENST00000570137.2:c.1363-1398C>T|||||||||-1||HGNC|23030|YES|CCDS32493.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.222883;gno_non_neuro_af_nfe=0.179213;gno_non_neuro_nhomalt_all=593;gno_non_neuro_nhomalt_nfe=224;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:38,0:38:99:.:.:0,101,1485:.	0|1:17,18:35:99:0|1:80639833_T_G:705,0,649:80639833	0/0:38,0:38:99:.:.:0,100,1320:.	0|1:28,23:51:99:0|1:80639833_T_G:881,0,1096:80639833	0|1:19,18:37:99:0|1:80639833_T_G:696,0,1053:80639833	0/0:35,0:35:99:.:.:0,99,1232:.	0|1:20,22:42:99:0|1:80639833_T_G:906,0,1137:80639833	0/0:41,0:41:99:.:.:0,111,1665:.	0|1:32,30:62:99:0|1:80639833_T_G:1175,0,1498:80639833	0|1:15,30:45:99:0|1:80639833_T_G:1246,0,609:80639833	0|1:28,26:54:99:0|1:80639833_T_G:1133,0,1288:80639833
-chr16	80834946	rs11150314	T	G	4455.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.806;DB;DP=484;ExcessHet=9.0714;FS=2.88;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=0.217;SOR=0.863;VQSLOD=23.42;culprit=MQRankSum;CSQ=G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000562812|protein_coding||1/7|ENST00000562812.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000563890|protein_coding||1/7|ENST00000563890.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000566173|protein_coding||1/7|ENST00000566173.1:c.24+3101A>C|||||||||-1||HGNC|23030|||||,G|intron_variant|MODIFIER|CDYL2|ENSG00000166446|Transcript|ENST00000570137|protein_coding||1/6|ENST00000570137.2:c.24+3101A>C|||||||||-1||HGNC|23030|YES|CCDS32493.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.283008;gno_non_neuro_af_nfe=0.266613;gno_non_neuro_nhomalt_all=871;gno_non_neuro_nhomalt_nfe=480;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,102,1320	0/1:22,17:39:99:429,0,628	0/0:34,0:34:99:0,99,1141	0/1:34,22:56:99:566,0,962	0/1:14,16:30:99:466,0,376	0/0:36,0:36:99:0,100,1205	0/1:17,11:28:99:277,0,462	0/0:34,0:34:99:0,99,1162	0/1:26,39:65:99:1125,0,709	0/1:26,25:51:99:689,0,750	0/1:37,35:72:99:921,0,1050
-chr16	81393010	rs71146005	G	GT	1074.52	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.16;DB;DP=342;ExcessHet=9.0714;FS=15.728;InbreedingCoeff=-0.4377;MLEAC=7;MLEAF=0.318;MQ=59.94;MQRankSum=0;QD=8.46;ReadPosRankSum=0.491;SOR=1.837;VQSLOD=5.1;culprit=MQRankSum;CSQ=T|intron_variant|MODIFIER|GAN|ENSG00000261609|Transcript|ENST00000568107|protein_coding||5/10|ENST00000568107.2:c.973+1491dup|||||||||1||HGNC|4137|YES|CCDS10935.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.433732;gno_non_neuro_af_nfe=0.491475;gno_non_neuro_nhomalt_all=1376;gno_non_neuro_nhomalt_nfe=1103;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:36,0:36:48:0,48,1021	0/1:7,9:16:99:167,0,103	0/0:40,0:40:96:0,96,1281	0/1:4,9:13:36:158,0,36	0/1:14,8:22:99:101,0,236	0/0:35,0:35:41:0,41,958	0/1:18,10:28:99:125,0,716	0/0:41,0:41:54:0,54,1216	0/1:2,9:11:10:163,0,10	0/1:5,8:16:65:152,0,65	0/1:10,14:24:99:226,0,125
-chr16	82152710	rs11639926	G	T	5032.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-1.398;DB;DP=501;ExcessHet=9.0714;FS=9.547;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.595;SOR=0.405;VQSLOD=23.96;culprit=MQRankSum;CSQ=T|downstream_gene_variant|MODIFIER|CTD-2588J6.1|ENSG00000260161|Transcript|ENST00000566728|processed_pseudogene|||||||||||1533|-1||Clone_based_vega_gene||YES||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+20484C>A|||||||||-1||Clone_based_vega_gene||YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.170261;gno_non_neuro_af_nfe=0.200132;gno_non_neuro_nhomalt_all=303;gno_non_neuro_nhomalt_nfe=265;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,99,1206	0/1:22,22:44:99:598,0,629	0/0:39,0:39:99:0,103,1256	0/1:24,30:54:99:855,0,637	0/1:20,21:41:99:607,0,571	0/0:32,0:32:93:0,93,1395	0/1:18,18:36:99:473,0,508	0/0:37,0:37:99:0,102,1342	0/1:33,40:73:99:1136,0,916	0/1:27,29:56:99:793,0,768	0/1:31,23:54:99:588,0,916
-chr16	82161091	rs35999878	TA	T	5062.38	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=477;ExcessHet=9.0714;FS=8.803;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=-0.067;SOR=0.888;VQSLOD=9.41;culprit=MQRankSum;CSQ=-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-510J16.5|ENSG00000261235|Transcript|ENST00000567021|antisense||1/3|ENST00000567021.1:n.43+12102del|||||||||-1||Clone_based_vega_gene||YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.22923;gno_non_neuro_af_nfe=0.284585;gno_non_neuro_nhomalt_all=309;gno_non_neuro_nhomalt_nfe=271;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:33,0:33:96:.:.:0,96,1440:.	0|1:14,18:32:99:0|1:82161091_TA_T:601,0,463:82161091	0/0:39,0:39:99:.:.:0,100,1315:.	0|1:24,22:46:99:0|1:82161091_TA_T:730,0,826:82161091	0|1:31,21:52:99:0|1:82161091_TA_T:672,0,1094:82161091	0/0:29,0:29:81:.:.:0,81,1215:.	0|1:24,15:39:99:0|1:82161091_TA_T:459,0,836:82161091	0/0:25,0:25:60:.:.:0,60,900:.	0|1:26,21:47:99:0|1:82161091_TA_T:666,0,909:82161091	0|1:33,31:64:99:0|1:82161091_TA_T:1024,0,1132:82161091	0|1:40,29:69:99:0|1:82161091_TA_T:928,0,1401:82161091
-chr16	82294753	rs35812977	A	G	3704.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-1.442;DB;DP=455;ExcessHet=9.0714;FS=7.721;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.508;SOR=0.425;VQSLOD=23.56;culprit=MQRankSum;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.0416353;gno_non_neuro_af_nfe=0.0542824;gno_non_neuro_nhomalt_all=25;gno_non_neuro_nhomalt_nfe=22;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,101,1351	0/1:14,13:27:99:336,0,406	0/0:39,0:39:99:0,105,1316	0/1:17,24:41:99:661,0,458	0/1:20,22:42:99:618,0,569	0/0:34,0:34:93:0,93,1395	0/1:14,22:36:99:612,0,379	0/0:36,0:36:99:0,99,1174	0/1:27,18:45:99:410,0,803	0/1:27,26:53:99:574,0,759	0/1:37,24:61:99:511,0,1078
-chr19	52133734	rs62115014	G	A	2625.42	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=0.996;DB;DP=358;ExcessHet=9.0714;FS=22.608;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=48.84;MQRankSum=1.86;NEGATIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=0.438;SOR=1.647;VQSLOD=-5.591;culprit=MQ;CSQ=A|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-845C>T|||||||||-1||HGNC|10874|||||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-265C>T|||||||||-1||Uniprot_gn|10874|YES||||,A|5_prime_UTR_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding|2/10||ENST00000534261.2:c.-146C>T||255/2356|||||||-1||HGNC|10874||CCDS33088.1|||,A|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||146|-1||HGNC|10874|YES|CCDS33088.1|||,A|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-845C>T|||||||||-1||Uniprot_gn|10874|||||;cadd_phred=-1;gno_non_neuro_af_all=0.298587;gno_non_neuro_af_nfe=0.278243;gno_non_neuro_nhomalt_all=828;gno_non_neuro_nhomalt_nfe=446;genic;highest_impact_order=35;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,105,1305	0/1:23,15:38:99:406,0,639	0/0:32,0:32:90:0,90,1350	0/1:13,15:28:99:437,0,352	0/1:25,14:39:99:363,0,730	0/0:31,0:31:90:0,90,1037	0/1:22,15:37:99:401,0,568	0/0:15,0:15:45:0,45,501	0/1:20,8:28:99:191,0,590	0/1:18,18:36:99:501,0,495	0/1:21,14:35:99:344,0,532
-chr19	52134334	.	TA	T	1565.46	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.496;DP=346;ExcessHet=9.0714;FS=9.467;InbreedingCoeff=-0.5172;MLEAC=7;MLEAF=0.318;MQ=59.87;MQRankSum=0;QD=9.91;ReadPosRankSum=-0.266;SOR=0.35;VQSLOD=5.73;culprit=MQRankSum;CSQ=-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-1446del|||||||||-1||HGNC|10874|||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-866del|||||||||-1||Uniprot_gn|10874|YES||||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-416del|||||||||-1||HGNC|10874||CCDS33088.1|||,-|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||747|-1||HGNC|10874|YES|CCDS33088.1|||,-|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-1446del|||||||||-1||Uniprot_gn|10874|||||;cadd_phred=-1;gno_non_neuro_af_all=0.300644;gno_non_neuro_af_nfe=0.330881;gno_non_neuro_nhomalt_all=704;gno_non_neuro_nhomalt_nfe=588;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:37,0:37:90:0,90,1350	0/1:5,14:19:53:265,0,53	0/0:41,0:41:99:0,107,1121	0/1:13,15:28:99:287,0,188	0/1:10,14:26:99:234,0,164	0/0:35,0:35:90:0,90,1090	0/1:7,9:16:99:160,0,106	0/0:11,0:11:0:0,0,293	0/1:15,13:30:99:228,0,242	0/1:14,11:25:99:180,0,208	0/1:5,13:18:48:225,0,48
-chr19	52135776	rs35970457	G	T	4332.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=1.69;DB;DP=418;ExcessHet=9.0714;FS=6.217;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=0.448;SOR=0.453;VQSLOD=23.53;culprit=MQRankSum;CSQ=T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000222107|protein_coding||2/8|ENST00000222107.4:c.422-2887C>A|||||||||-1||HGNC|10874|||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000429354|protein_coding||1/8|ENST00000429354.3:c.38-2307C>A|||||||||-1||Uniprot_gn|10874|YES||||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000534261|protein_coding||1/9|ENST00000534261.2:c.-331-1857C>A|||||||||-1||HGNC|10874||CCDS33088.1|||,T|upstream_gene_variant|MODIFIER|SIGLEC5|ENSG00000105501|Transcript|ENST00000570106|protein_coding|||||||||||2188|-1||HGNC|10874|YES|CCDS33088.1|||,T|intron_variant|MODIFIER|SIGLEC5|ENSG00000268500|Transcript|ENST00000599649|protein_coding||2/8|ENST00000599649.1:c.422-2887C>A|||||||||-1||Uniprot_gn|10874|||||;cadd_phred=-1;gno_non_neuro_af_all=0.291102;gno_non_neuro_af_nfe=0.327437;gno_non_neuro_nhomalt_all=1319;gno_non_neuro_nhomalt_nfe=1031;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,99,1220	0/1:18,11:29:99:295,0,498	0/0:36,0:36:59:0,59,1072	0/1:26,19:45:99:497,0,654	0/1:16,22:38:99:616,0,432	0/0:36,0:36:94:0,94,1142	0/1:11,18:29:99:539,0,270	0/0:16,0:16:48:0,48,526	0/1:16,33:49:99:970,0,299	0/1:18,21:39:99:593,0,393	0/1:31,30:61:99:840,0,669
-chr19	52250589	rs7253355	G	A	3852.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=1.35;DB;DP=445;ExcessHet=9.0714;FS=0.884;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=59.98;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.264;SOR=0.751;VQSLOD=8.56;culprit=MQRankSum;CSQ=A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-331C>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-331C>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4690|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-331C>T|||||||||-1|cds_end_NF|HGNC|3826|||||;cadd_phred=-1;gno_non_neuro_af_all=0.248148;gno_non_neuro_af_nfe=0.229188;gno_non_neuro_nhomalt_all=668;gno_non_neuro_nhomalt_nfe=367;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,116,1625	0/1:10,19:29:99:563,0,260	0/0:35,0:35:70:0,70,1107	0/1:21,22:43:99:616,0,536	0/1:31,13:44:99:320,0,850	0/0:29,0:29:81:0,81,1215	0/1:13,10:23:99:269,0,348	0/0:37,0:37:99:0,101,1240	0/1:24,18:42:99:454,0,618	0/1:19,26:45:99:768,0,455	0/1:34,32:66:99:880,0,769
-chr19	52250888	rs113978889	G	GATTCATGAATAC	7078.38	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.199;DB;DP=466;ExcessHet=9.0714;FS=0.416;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;QD=23.13;ReadPosRankSum=-0.59;SOR=0.74;VQSLOD=8.83;culprit=MQRankSum;CSQ=ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826||CCDS12839.1|||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,ATTCATGAATAC|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4390|1|cds_end_NF|HGNC|3827|||||,ATTCATGAATAC|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-631_-11-630insGTATTCATGAAT|||||||||-1|cds_end_NF|HGNC|3826|||||;cadd_phred=-1;gno_non_neuro_af_all=0.242757;gno_non_neuro_af_nfe=0.225191;gno_non_neuro_nhomalt_all=577;gno_non_neuro_nhomalt_nfe=313;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:42,0:42:99:.:.:0,105,1524:.	0|1:14,15:29:99:0|1:52250888_G_GATTCATGAATAC:627,0,2162:52250888	0/0:35,0:35:93:.:.:0,93,1182:.	0|1:19,22:41:99:0|1:52250888_G_GATTCATGAATAC:902,0,2920:52250888	0|1:24,15:39:99:0|1:52250888_G_GATTCATGAATAC:639,0,3998:52250888	0/0:30,0:30:81:.:.:0,81,1215:.	0|1:14,20:34:99:0|1:52250888_G_GATTCATGAATAC:839,0,2184:52250888	0/0:43,0:43:99:.:.:0,101,1445:.	0|1:17,36:53:99:0|1:52250888_G_GATTCATGAATAC:1499,0,953:52250888	0|1:21,25:46:99:0|1:52250888_G_GATTCATGAATAC:1084,0,3342:52250888	0|1:32,32:64:99:0|1:52250888_G_GATTCATGAATAC:1506,0,5140:52250888
-chr19	52250892	rs12980168	T	A	6593.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=471;ExcessHet=9.0714;FS=0.848;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60.03;MQRankSum=0;QD=20.67;ReadPosRankSum=-0.977;SOR=0.628;VQSLOD=6.95;culprit=MQRankSum;CSQ=A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000304748|protein_coding||1/1|ENST00000304748.4:c.-11-634A>T|||||||||-1||HGNC|3826||CCDS12839.1|||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000594900|protein_coding||2/2|ENST00000594900.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000595042|protein_coding||2/2|ENST00000595042.1:c.-11-634A>T|||||||||-1||HGNC|3826|YES|CCDS12839.1|||,A|upstream_gene_variant|MODIFIER|FPR2|ENSG00000171049|Transcript|ENST00000600258|protein_coding|||||||||||4387|1|cds_end_NF|HGNC|3827|||||,A|intron_variant|MODIFIER|FPR1|ENSG00000171051|Transcript|ENST00000600815|protein_coding||1/1|ENST00000600815.1:c.-11-634A>T|||||||||-1|cds_end_NF|HGNC|3826|||||;cadd_phred=-1;gno_non_neuro_af_all=0.243128;gno_non_neuro_af_nfe=0.225295;gno_non_neuro_nhomalt_all=578;gno_non_neuro_nhomalt_nfe=313;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:42,0:42:99:.:.:0,105,1524:.	0|1:14,16:30:99:0|1:52250888_G_GATTCATGAATAC:657,0,2159:52250888	0/0:36,0:36:99:.:.:0,99,1485:.	0|1:22,23:45:99:0|1:52250888_G_GATTCATGAATAC:899,0,2951:52250888	0|1:25,17:42:99:0|1:52250888_G_GATTCATGAATAC:639,0,3998:52250888	0/0:30,0:30:81:.:.:0,81,1215:.	0|1:14,20:34:99:0|1:52250888_G_GATTCATGAATAC:798,0,2187:52250888	0/0:43,0:43:99:.:.:0,101,1445:.	0|1:20,34:54:99:0|1:52250888_G_GATTCATGAATAC:1367,0,1025:52250888	0|1:22,22:44:99:0|1:52250888_G_GATTCATGAATAC:829,0,3392:52250888	0|1:33,37:70:99:0|1:52250888_G_GATTCATGAATAC:1422,0,5146:52250888
-chr19	53546001	rs11456354	C	CT	3168.1	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=461;ExcessHet=9.3779;FS=11.346;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60.05;MQRankSum=0;QD=10.25;ReadPosRankSum=-0.105;SOR=0.731;VQSLOD=6.98;culprit=MQRankSum;CSQ=T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000594516|processed_transcript|||||||||||4865|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ZNF702P|ENSG00000242779|Transcript|ENST00000600425|processed_transcript|||||||||||4850|-1||HGNC|25775|||||,T|upstream_gene_variant|MODIFIER|ERVV-2|ENSG00000268964|Transcript|ENST00000601417|protein_coding|||||||||||1989|1||HGNC|39051|YES|CCDS59420.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.34934;gno_non_neuro_af_nfe=0.373508;gno_non_neuro_nhomalt_all=859;gno_non_neuro_nhomalt_nfe=628;highest_impact_order=51;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:36,0:36:99:.:.:0,102,1530:.	0|1:20,14:34:99:0|1:53546001_C_CT:286,0,435:53546001	0|0:11,0:20:99:0|1:53546001_C_CTT:252,286,647:53546001	1/0:7,12:31:88:.:.:453,100,188:.	0/1:30,15:45:99:.:.:256,0,619:.	0/0:11,0:22:99:.:.:303,336,672:.	0/1:33,10:43:99:.:.:125,0,706:.	0/0:13,0:27:99:.:.:403,442,867:.	0/1:29,8:40:90:.:.:90,0,687:.	0/1:12,16:29:99:.:.:327,0,201:.	1/0:1,8:28:99:.:.:705,371,320:.
-chr20	25742657	rs112655215	TA	T	1518.7	VQSRTrancheINDEL99.00to99.90	AC=7;AF=0.318;AN=22;BaseQRankSum=0.872;DB;DP=554;ExcessHet=9.0714;FS=9.573;InbreedingCoeff=-0.4985;MLEAC=7;MLEAF=0.318;MQ=56.51;MQRankSum=-6.102;NEGATIVE_TRAIN_SITE;QD=4.1;ReadPosRankSum=1.54;SOR=1.37;VQSLOD=-2.626;culprit=MQ;CSQ=-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1444|-1||HGNC|34503|||||,-|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1444|-1||HGNC|34503|||||;cadd_phred=-1;gno_non_neuro_af_all=-1;gno_non_neuro_af_nfe=-1;gno_non_neuro_nhomalt_all=-1;gno_non_neuro_nhomalt_nfe=-1;highest_impact_order=53;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:39,0:39:96:.:.:0,96,1440:.	0|1:36,3:39:18:0|1:25742657_TA_T:18,0,2465:25742657	0/0:42,0:42:99:.:.:0,103,1379:.	0|1:32,7:39:99:0|1:25742657_TA_T:198,0,1857:25742657	0|1:32,5:37:99:0|1:25742657_TA_T:132,0,1825:25742657	0|0:29,2:31:3:0|1:25742657_TA_T:0,3,1315:25742657	0|1:31,5:36:99:0|1:25742657_TA_T:117,0,1606:25742657	0/0:26,0:26:70:.:.:0,70,904:.	0|1:63,14:77:99:0|1:25742657_TA_T:391,0,2594:25742657	0|1:54,10:64:99:0|1:25742657_TA_T:250,0,2242:25742657	0|1:63,15:78:99:0|1:25742657_TA_T:428,0,3582:25742657
-chr20	25742669	rs62213491	G	A	1466.43	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.104;DB;DP=548;ExcessHet=9.0714;FS=14.421;InbreedingCoeff=-0.5141;MLEAC=7;MLEAF=0.318;MQ=56.4;MQRankSum=-6.102;QD=4.03;ReadPosRankSum=0.242;SOR=1.367;VQSLOD=-2.682;culprit=MQ;CSQ=A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000376404|protein_coding|||||||||||1433|-1||HGNC|34503|||||,A|downstream_gene_variant|MODIFIER|FAM182B|ENSG00000175170|Transcript|ENST00000478164|processed_transcript|||||||||||1433|-1||HGNC|34503|||||;cadd_phred=-1;gno_non_neuro_af_all=-1;gno_non_neuro_af_nfe=-1;gno_non_neuro_nhomalt_all=-1;gno_non_neuro_nhomalt_nfe=-1;highest_impact_order=53;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:36,0:36:39:.:.:0,39,1092:.	0|1:36,3:39:15:0|1:25742657_TA_T:15,0,2484:25742657	0/0:41,0:41:54:.:.:0,54,1256:.	0|1:33,8:41:99:0|1:25742657_TA_T:221,0,1880:25742657	0|1:35,7:42:99:0|1:25742657_TA_T:153,0,1881:25742657	0|0:28,2:30:0:0|1:25742657_TA_T:0,0,1274:25742657	0|1:29,5:34:99:0|1:25742657_TA_T:123,0,1520:25742657	0/0:36,0:36:39:.:.:0,39,1113:.	0|1:61,13:74:99:0|1:25742657_TA_T:359,0,2488:25742657	0|1:54,9:63:99:0|1:25742657_TA_T:209,0,2253:25742657	0|1:57,14:71:99:0|1:25742657_TA_T:400,0,3445:25742657
-chr20	52482965	rs57319922	ATT	A	3524.69	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.89;DB;DP=405;ExcessHet=0.5742;FS=0;InbreedingCoeff=0.3714;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;QD=15.88;ReadPosRankSum=0.366;SOR=0.707;VQSLOD=8.98;culprit=MQRankSum;CSQ=-|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=-1;gno_non_neuro_af_nfe=-1;gno_non_neuro_nhomalt_all=-1;gno_non_neuro_nhomalt_nfe=-1;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:37,0:43:86:86,197,1635	0/1:5,9:24:99:538,289,440	0/0:41,0:41:89:0,89,1346	0/1:6,8:23:12:684,468,764	0/1:15,10:25:99:227,0,386	0/0:41,0:41:99:0,111,1320	0/1:7,9:23:60:307,60,216	0/0:11,7:31:99:584,410,703	1/0:1,14:16:20:476,91,76	1/0:4,5:11:54:198,69,144	1/0:4,7:28:62:485,320,476
-chr20	54033324	rs34543864;rs67863628	C	CT	3775.1	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.348;DB;DP=258;ExcessHet=2.9436;FS=29.934;InbreedingCoeff=-0.1273;MLEAC=6;MLEAF=0.273;MQ=57.8;MQRankSum=0;QD=29.73;ReadPosRankSum=-0.589;SOR=0.036;VQSLOD=0.33;culprit=MQRankSum;CSQ=T|downstream_gene_variant|MODIFIER|RP5-1010E17.2|ENSG00000224008|Transcript|ENST00000433766|lincRNA|||||||||||3549|-1||Clone_based_vega_gene||YES||||;cadd_phred=-1;gno_non_neuro_af_all=-1;gno_non_neuro_af_nfe=-1;gno_non_neuro_nhomalt_all=-1;gno_non_neuro_nhomalt_nfe=-1;highest_impact_order=53;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:3,0:26:99:951,966,1137	0/1:0,7:14:99:388,272,251	0/0:8,0:17:99:354,378,933	0/1:0,7:14:99:368,252,231	0/1:0,5:24:98:865,782,767	0/0:9,0:10:2:0,14,161	0/1:3,4:9:31:83,0,31	0/0:4,0:13:99:364,376,470	1/0:0,1:3:14:144,62,44	0/1:1,1:9:1:284,271,284	0/1:2,1:4:9:9,0,15
-chr20	54066953	.	G	GT	2623.89	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.566;DP=424;ExcessHet=6.4503;FS=6.589;InbreedingCoeff=-0.3162;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-0.02;SOR=1.008;VQSLOD=8.23;culprit=MQRankSum;CSQ=T|intron_variant&non_coding_transcript_variant|MODIFIER|RP5-1010E17.1|ENSG00000235166|Transcript|ENST00000416190|lincRNA||4/7|ENST00000416190.1:n.685-1124_685-1123insT|||||||||1||Clone_based_vega_gene||YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.536377;gno_non_neuro_af_nfe=0.607916;gno_non_neuro_nhomalt_all=2722;gno_non_neuro_nhomalt_nfe=2223;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:43,0:43:96:0,96,1440	0/1:8,6:14:99:195,0,319	0/0:38,0:38:87:0,87,1305	0/1:11,14:25:99:479,0,420	0/1:22,17:39:99:523,0,853	0/0:39,0:39:96:0,96,1440	1/0:0,10:21:99:602,323,406	0/0:11,0:28:99:610,588,928	0/1:27,11:38:99:239,0,1298	0/1:6,11:17:99:372,0,189	0/1:15,16:31:99:508,0,570
-chr20	56003327	rs6064549	T	G	2573.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.935;DB;DP=363;ExcessHet=9.0714;FS=3.606;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60.27;MQRankSum=0;QD=13.91;ReadPosRankSum=0.759;SOR=0.47;VQSLOD=5;culprit=MQRankSum;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.26186;gno_non_neuro_af_nfe=0.310772;gno_non_neuro_nhomalt_all=656;gno_non_neuro_nhomalt_nfe=538;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:44,0:44:99:.:.:0,99,1485:.	0/1:15,10:25:99:.:.:345,0,514:.	0/0:41,0:41:99:.:.:0,99,1274:.	0|1:14,14:28:99:0|1:56003327_T_G:525,0,826:56003327	0/1:8,14:22:99:.:.:572,0,299:.	0/0:27,0:27:72:.:.:0,72,1080:.	0/1:13,12:25:99:.:.:411,0,500:.	0/0:53,0:53:99:.:.:0,108,1646:.	0/1:6,17:23:56:.:.:377,0,56:.	0/1:17,5:22:83:.:.:83,0,583:.	0/1:26,14:40:99:.:.:278,0,730:.
-chr20	57159924	rs138169217;rs58239093	TTTCC	T	3495.38	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=377;ExcessHet=9.0714;FS=1.121;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=59.65;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=18.3;ReadPosRankSum=0.094;SOR=0.604;VQSLOD=6.39;culprit=MQRankSum;CSQ=-|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-33855_944-33852del|||||||||1||HGNC|27152|||||;cadd_phred=-1;gno_non_neuro_af_all=0.417144;gno_non_neuro_af_nfe=0.450964;gno_non_neuro_nhomalt_all=1789;gno_non_neuro_nhomalt_nfe=1316;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,100,1326	0/1:9,8:17:99:298,0,467	0/0:42,0:42:99:0,100,1244	0/1:13,12:25:99:445,0,512	0/1:13,23:36:99:927,0,639	0/0:37,0:37:81:0,81,995	0/1:16,9:25:99:317,0,670	0/0:39,0:39:99:0,108,1620	0/1:19,16:35:99:615,0,945	0/1:17,10:27:99:369,0,895	0/1:11,15:26:99:542,0,408
-chr20	57164080	rs4812020	G	A	4106.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-1.066;DB;DP=484;ExcessHet=9.0714;FS=3.527;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=60;MQRankSum=0;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.658;SOR=0.769;VQSLOD=23.65;culprit=MQRankSum;CSQ=A|intron_variant&non_coding_transcript_variant|MODIFIER|APCDD1L-AS1|ENSG00000231290|Transcript|ENST00000427140|lincRNA||6/6|ENST00000427140.1:n.944-29716G>A|||||||||1||HGNC|27152|||||;cadd_phred=-1;gno_non_neuro_af_all=0.480499;gno_non_neuro_af_nfe=0.492061;gno_non_neuro_nhomalt_all=2472;gno_non_neuro_nhomalt_nfe=1647;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,99,1459	0/1:25,19:44:99:529,0,671	0/0:35,0:35:99:0,105,1167	0/1:22,17:39:99:444,0,648	0/1:24,23:47:99:649,0,628	0/0:36,0:36:99:0,99,1191	0/1:18,22:40:99:605,0,481	0/0:40,0:40:99:0,108,1391	0/1:35,18:53:99:456,0,1046	0/1:24,26:50:99:696,0,684	0/1:33,28:61:99:745,0,964
-chr20	57246491	rs35720492	TGG	*	3220.93	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=431;ExcessHet=9.3779;FS=7.165;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=59.75;MQRankSum=0;QD=9.47;ReadPosRankSum=-0.044;SOR=1.03;VQSLOD=4.91;culprit=MQRankSum;cadd_phred=-1;gno_non_neuro_af_all=0.372515;gno_non_neuro_af_nfe=0.403123;gno_non_neuro_nhomalt_all=1386;gno_non_neuro_nhomalt_nfe=1055;highest_impact_order=2147483646;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0|0:18,0:37:99:0|1:57246480_T_TTTA:744,798,2276:57246480	0/1:18,7:25:99:.:.:321,0,1225:.	0|0:16,0:35:99:0|1:57246480_T_TTTA:728,779,1790:57246480	0|1:14,16:30:99:0|1:57246478_C_CT:672,0,537:57246478	0|1:23,26:49:99:0|1:57246478_C_CT:1023,0,1776:57246478	0|0:14,0:29:99:0|1:57246480_T_TTTA:585,630,1785:57246480	0/1:0,17:27:99:.:.:1368,397,326:.	0/0:40,0:40:99:.:.:0,107,1340:.	0/1:32,14:49:99:.:.:742,0,1316:.	0/1:0,8:26:99:.:.:1783,788,713:.	0/1:24,12:37:99:.:.:818,0,966:.
-chr20	57311528	rs60524735;rs71181980	CA	C	1771.2	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=192;ExcessHet=4.4261;FS=9.388;InbreedingCoeff=-0.221;MLEAC=7;MLEAF=0.318;MQ=60.31;MQRankSum=0;QD=20.36;ReadPosRankSum=0;SOR=0.077;VQSLOD=5.11;culprit=MQRankSum;CSQ=-|downstream_gene_variant|MODIFIER|PIEZO1P2|ENSG00000237121|Transcript|ENST00000416241|unprocessed_pseudogene|||||||||||4059|-1||HGNC|42861|YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.387299;gno_non_neuro_af_nfe=0.38905;gno_non_neuro_nhomalt_all=271;gno_non_neuro_nhomalt_nfe=190;highest_impact_order=53;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:1,0:4:18:74,77,104	0/1:0,6:12:99:204,111,123	0/0:6,0:10:88:88,128,519	0/1:0,6:9:85:182,85,91	0/1:0,10:17:99:342,191,220	0/0:4,0:8:76:95,112,253	0/1:0,6:10:99:255,171,212	0/0:0,0:9:30:290,260,257	0/1:0,3:4:34:79,34,47	0/1:1,4:6:27:46,0,27	0/1:0,3:5:38:102,44,38
-chr21	9830249	rs75884386	G	A	7055.8	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=1.94;DB;DP=1399;ExcessHet=9.0714;FS=1.903;InbreedingCoeff=-0.6299;MLEAC=8;MLEAF=0.364;MQ=57.17;MQRankSum=0.828;NEGATIVE_TRAIN_SITE;QD=8;ReadPosRankSum=-0.978;SOR=0.653;VQSLOD=-2.57;culprit=MQ;CSQ=A|downstream_gene_variant|MODIFIER|MIR3687|ENSG00000264063|Transcript|ENST00000577708|miRNA|||||||||||3986|1||HGNC|38946|YES||||,A|downstream_gene_variant|MODIFIER|MIR3648|ENSG00000264462|Transcript|ENST00000581792|miRNA|||||||||||4238|1||HGNC|38941|YES||||;cadd_phred=-1;gno_non_neuro_af_all=-1;gno_non_neuro_af_nfe=-1;gno_non_neuro_nhomalt_all=-1;gno_non_neuro_nhomalt_nfe=-1;highest_impact_order=53;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:98,0:98:0:0,0,2292	0/1:56,57:113:99:1603,0,1446	0/0:119,0:119:0:0,0,2389	0/1:60,54:114:99:1480,0,1715	0/1:60,54:114:99:1411,0,1733	0/0:117,0:117:0:0,0,2327	0/1:39,42:81:99:1107,0,1033	0/0:90,8:98:26:0,26,2928	0/1:140,53:193:99:1237,0,3794	0/1:75,14:89:99:167,0,2254	0/1:161,17:178:55:55,0,4528
-chrX	134937170	rs200921509	G	GAAAAGA	3549.4	VQSRTrancheINDEL99.00to99.90	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.14;DB;DP=224;ExcessHet=9.0714;FS=0;InbreedingCoeff=-0.4671;MLEAC=7;MLEAF=0.318;MQ=25.64;MQRankSum=0.134;QD=24.15;ReadPosRankSum=0.845;SOR=1.041;VQSLOD=-0.504;culprit=MQ;CSQ=AAAAGA|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.170-6284_170-6279dup|||||||||-1||HGNC|33269|||||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000434966|protein_coding|||||||||||435|-1||HGNC|33269||CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000487941|protein_coding|||||||||||435|-1||HGNC|33269|YES|CCDS35405.1|||,AAAAGA|upstream_gene_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000494421|protein_coding|||||||||||620|-1||HGNC|33269||CCDS35405.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.483591;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.479371;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=32;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=19;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:15,0:15:45:0,45,501	0/1:12,9:21:99:342,0,490	0/0:9,0:9:27:0,27,272	0/1:10,3:13:96:96,0,447	0/1:2,8:10:99:359,0,114	0/0:25,0:25:40:0,40,749	0/1:16,9:25:99:330,0,832	0/0:9,0:9:27:0,27,282	0/1:11,37:50:99:1641,0,327	0/1:4,3:7:99:114,0,242	0/1:9,14:25:99:685,0,312
-chrX	134948600	rs28496014	C	T	5864.42	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=0.389;DB;DP=504;ExcessHet=9.0714;FS=193.058;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=50.9;MQRankSum=-5.098;QD=15.19;ReadPosRankSum=-2.875;SOR=4.094;VQSLOD=-257.2;culprit=FS;CSQ=T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1478G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-445G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-445G>A|||||||||-1||HGNC|33270||CCDS35406.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.420312;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.404793;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=2;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=2;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:38,0:38:99:.:.:0,103,1287:.	0|1:32,30:62:99:0|1:134948600_C_T:1205,0,1319:134948600	0/0:19,0:19:54:.:.:0,54,810:.	0|1:43,30:73:99:0|1:134948600_C_T:1234,0,1910:134948600	0|1:17,36:53:99:0|1:134948600_C_T:1476,0,602:134948600	0/0:37,0:37:99:.:.:0,99,1272:.	0|1:38,33:71:99:0|1:134948600_C_T:1292,0,1630:134948600	0/0:23,0:23:66:.:.:0,66,759:.	0|1:47,9:56:99:0|1:134948600_C_T:360,0,1934:134948600	0|1:26,2:28:90:0|1:134948600_C_T:90,0,1016:134948600	0|1:37,6:43:99:0|1:134948600_C_T:225,0,1478:134948600
-chrX	134948607	rs28548436	G	A	8264.42	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.104;DB;DP=548;ExcessHet=9.0714;FS=106.681;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=50.71;MQRankSum=-5.313;QD=19.31;ReadPosRankSum=-3.049;SOR=4.047;VQSLOD=-85.24;culprit=ReadPosRankSum;CSQ=A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1471C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-452C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-452C>T|||||||||-1||HGNC|33270||CCDS35406.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.421811;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.406186;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=3;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=2;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:38,0:38:99:.:.:0,103,1287:.	0|1:33,36:69:99:0|1:134948600_C_T:1451,0,1385:134948600	0/0:20,0:20:54:.:.:0,54,810:.	0|1:46,36:82:99:0|1:134948600_C_T:1483,0,1950:134948600	0|1:18,39:57:99:0|1:134948600_C_T:1696,0,629:134948600	0/0:37,0:37:99:.:.:0,99,1272:.	0|1:36,33:69:99:0|1:134948600_C_T:1410,0,1644:134948600	0/0:24,0:24:72:.:.:0,72,774:.	0|1:46,24:70:99:0|1:134948600_C_T:1202,0,1877:134948600	0|1:22,9:31:99:0|1:134948600_C_T:390,0,951:134948600	0|1:33,17:50:99:0|1:134948600_C_T:650,0,1405:134948600
-chrX	134948616	rs80141830	C	G	10797.4	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.522;DB;DP=613;ExcessHet=9.0714;FS=100.79;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=48.97;MQRankSum=-6.059;QD=21.77;ReadPosRankSum=-2.647;SOR=3.591;VQSLOD=-77.59;culprit=FS;CSQ=G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1462G>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-461G>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-461G>C|||||||||-1||HGNC|33270||CCDS35406.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.429463;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.416219;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=3;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=2;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:38,0:38:99:.:.:0,103,1287:.	0|1:35,43:78:99:0|1:134948600_C_T:1700,0,1409:134948600	0/0:19,0:19:57:.:.:0,57,640:.	0|1:45,41:86:99:0|1:134948600_C_T:1625,0,1909:134948600	0|1:19,46:65:99:0|1:134948600_C_T:1913,0,698:134948600	0/0:37,0:37:99:.:.:0,99,1272:.	0|1:38,40:78:99:0|1:134948600_C_T:1562,0,1655:134948600	0/0:22,0:22:63:.:.:0,63,735:.	0|1:46,55:101:99:0|1:134948600_C_T:2450,0,1955:134948600	0|1:19,14:33:99:0|1:134948600_C_T:570,0,795:134948600	0|1:31,24:55:99:0|1:134948600_C_T:995,0,1265:134948600
-chrX	134948621	rs76502734	G	A	12312.4	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.303;DB;DP=648;ExcessHet=9.0714;FS=94.1;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=47.7;MQRankSum=-6.004;QD=23.19;ReadPosRankSum=-1.462;SOR=3.563;VQSLOD=-69.37;culprit=FS;CSQ=A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1457C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-466C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-466C>T|||||||||-1||HGNC|33270||CCDS35406.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.432844;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.420593;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=3;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=2;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:38,0:38:99:.:.:0,103,1287:.	0|1:33,45:78:99:0|1:134948600_C_T:1829,0,1358:134948600	0/0:19,0:19:51:.:.:0,51,765:.	0|1:47,44:91:99:0|1:134948600_C_T:1745,0,1984:134948600	0|1:21,52:73:99:0|1:134948600_C_T:2246,0,716:134948600	0/0:37,0:37:99:.:.:0,99,1272:.	0|1:37,42:79:99:0|1:134948600_C_T:1694,0,1562:134948600	0/0:22,0:22:63:.:.:0,63,735:.	0|1:48,66:114:99:0|1:134948600_C_T:2912,0,1922:134948600	0|1:19,16:35:99:0|1:134948600_C_T:699,0,744:134948600	0|1:32,29:61:99:0|1:134948600_C_T:1205,0,1250:134948600
-chrX	134948627	rs28564164	G	T	13551.4	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=689;ExcessHet=9.0714;FS=77.771;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=46.64;MQRankSum=-6.154;QD=23.69;ReadPosRankSum=-0.588;SOR=3.175;VQSLOD=-49.84;culprit=FS;CSQ=T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1451C>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-472C>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-472C>A|||||||||-1||HGNC|33270||CCDS35406.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.433457;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.422021;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=3;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=2;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:38,0:38:99:.:.:0,103,1287:.	0|1:34,46:80:99:0|1:134948600_C_T:1871,0,1355:134948600	0/0:19,0:19:57:.:.:0,57,640:.	0|1:49,48:97:99:0|1:134948600_C_T:1868,0,2017:134948600	0|1:20,55:75:99:0|1:134948600_C_T:2246,0,716:134948600	0/0:37,0:37:99:.:.:0,99,1272:.	0|1:38,43:81:99:0|1:134948600_C_T:1691,0,1604:134948600	0/0:22,0:22:63:.:.:0,63,735:.	0|1:53,81:134:99:0|1:134948600_C_T:3488,0,2048:134948600	0|1:18,22:40:99:0|1:134948600_C_T:990,0,765:134948600	0|1:30,35:65:99:0|1:134948600_C_T:1415,0,1235:134948600
-chrX	134948631	rs200670901	T	C	14512.4	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=0;DB;DP=714;ExcessHet=9.0714;FS=73.518;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=45.91;MQRankSum=-6.184;QD=24.31;ReadPosRankSum=0.148;SOR=3.066;VQSLOD=-45.68;culprit=MQ;CSQ=C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1447A>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-476A>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-476A>G|||||||||-1||HGNC|33270||CCDS35406.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.434103;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.42281;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=3;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=2;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:38,0:38:99:.:.:0,103,1287:.	0|1:33,47:80:99:0|1:134948600_C_T:1900,0,1352:134948600	0/0:19,0:19:57:.:.:0,57,640:.	0|1:49,48:97:99:0|1:134948600_C_T:1894,0,2056:134948600	0|1:20,56:76:99:0|1:134948600_C_T:2441,0,656:134948600	0/0:37,0:37:99:.:.:0,99,1272:.	0|1:37,44:81:99:0|1:134948600_C_T:1737,0,1630:134948600	0/0:22,0:22:63:.:.:0,63,735:.	0|1:55,94:149:99:0|1:134948600_C_T:3836,0,2074:134948600	0|1:19,27:46:99:0|1:134948600_C_T:1105,0,714:134948600	0|1:30,38:68:99:0|1:134948600_C_T:1617,0,1175:134948600
-chrX	134948635	rs79645126	A	C	14726.4	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=0.035;DB;DP=735;ExcessHet=9.0714;FS=66.587;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=45.42;MQRankSum=-6.252;QD=23.83;ReadPosRankSum=-0.345;SOR=2.865;VQSLOD=-38.84;culprit=MQ;CSQ=C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1443T>G|||||||||-1||HGNC|33269|||||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-480T>G|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,C|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-480T>G|||||||||-1||HGNC|33270||CCDS35406.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.434903;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.42377;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=3;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=2;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:38,0:38:99:.:.:0,103,1287:.	0|1:32,49:81:99:0|1:134948600_C_T:1928,0,1244:134948600	0/0:19,0:19:51:.:.:0,51,765:.	0|1:48,49:97:99:0|1:134948600_C_T:1897,0,2014:134948600	0|1:19,61:80:99:0|1:134948600_C_T:2441,0,656:134948600	0/0:37,0:37:99:.:.:0,99,1272:.	0|1:36,46:82:99:0|1:134948600_C_T:1774,0,1501:134948600	0/0:22,0:22:63:.:.:0,63,735:.	0|1:58,97:155:99:0|1:134948600_C_T:3861,0,2079:134948600	0|1:19,29:48:99:0|1:134948600_C_T:1135,0,711:134948600	0|1:30,45:75:99:0|1:134948600_C_T:1708,0,1124:134948600
-chrX	134948709	.	C	T	5029.42	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=2.11;DP=1113;ExcessHet=9.0714;FS=22.023;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=37.91;MQRankSum=2.79;QD=5.06;ReadPosRankSum=-0.122;SOR=0.396;VQSLOD=-10.5;culprit=MQ;CSQ=T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1369G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-554G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-554G>A|||||||||-1||HGNC|33270||CCDS35406.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.293792;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.302233;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:38,0:38:99:.:.:0,103,1287:.	0|1:103,15:118:99:0|1:134948709_C_T:306,0,4290:134948709	0/0:26,0:26:78:.:.:0,78,844:.	0|1:101,23:124:99:0|1:134948709_C_T:638,0,4104:134948709	0|1:101,20:121:99:0|1:134948709_C_T:525,0,4142:134948709	0/0:37,0:37:99:.:.:0,99,1272:.	0|1:102,22:124:99:0|1:134948709_C_T:617,0,4203:134948709	0/0:18,0:18:51:.:.:0,51,765:.	0|1:255,60:315:99:0|1:134948709_C_T:1636,0,10052:134948709	0|1:50,19:69:99:0|1:134948709_C_T:623,0,1978:134948709	0|1:98,24:122:99:0|1:134948709_C_T:702,0,3904:134948709
-chrX	134948718	rs371407110	C	T	5028.42	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=0.15;DB;DP=1082;ExcessHet=9.0714;FS=21.995;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=37.69;MQRankSum=2.47;QD=5.23;ReadPosRankSum=0.147;SOR=0.466;VQSLOD=-10.47;culprit=MQ;CSQ=T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1360G>A|||||||||-1||HGNC|33269|||||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-563G>A|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,T|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-563G>A|||||||||-1||HGNC|33270||CCDS35406.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.287569;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.296629;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:38,0:38:99:.:.:0,103,1287:.	0|1:105,14:119:99:0|1:134948709_C_T:269,0,4332:134948709	0/0:28,0:28:81:.:.:0,81,933:.	0|1:101,21:122:99:0|1:134948709_C_T:572,0,4176:134948709	0|1:102,20:122:99:0|1:134948709_C_T:506,0,4229:134948709	0/0:37,0:37:99:.:.:0,99,1272:.	0|1:102,23:125:99:0|1:134948709_C_T:646,0,4194:134948709	0/0:18,0:18:54:.:.:0,54,585:.	0|1:229,57:286:99:0|1:134948709_C_T:1662,0,9549:134948709	0|1:48,20:68:99:0|1:134948709_C_T:658,0,1961:134948709	0|1:94,25:119:99:0|1:134948709_C_T:733,0,3850:134948709
-chrX	134948824	rs143758909	G	A	2988.42	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=2.06;DB;DP=752;ExcessHet=9.0714;FS=0.606;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=28.95;MQRankSum=0.666;QD=4.61;ReadPosRankSum=0.497;SOR=0.787;VQSLOD=-9.321;culprit=MQ;CSQ=A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+1254C>T|||||||||-1||HGNC|33269|||||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.170-669C>T|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,A|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.170-669C>T|||||||||-1||HGNC|33270||CCDS35406.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.374159;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.36645;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=1;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=1;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,103,1287	0/1:74,23:97:99:428,0,1952	0/0:16,0:16:48:0,48,556	0/1:86,25:111:99:433,0,2206	0/1:66,18:84:99:298,0,1726	0/0:34,0:34:90:0,90,1350	0/1:68,20:88:99:342,0,1719	0/0:16,0:16:48:0,48,536	0/1:98,34:132:99:595,0,2318	0/1:31,17:48:99:353,0,658	0/1:60,28:88:99:557,0,1405
-chrX	134949149	rs138614224	A	G	1907.42	VQSRTrancheSNP99.90to100.00	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.514;DB;DP=387;ExcessHet=9.0714;FS=3.677;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=27.22;MQRankSum=-0.372;QD=6.81;ReadPosRankSum=1.72;SOR=0.929;VQSLOD=-10.09;culprit=MQ;CSQ=G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000370724|protein_coding||2/4|ENST00000370724.3:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A4|ENSG00000228836|Transcript|ENST00000420087|protein_coding||2/4|ENST00000420087.2:c.169+929T>C|||||||||-1||HGNC|33269|||||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000463085|protein_coding||2/4|ENST00000463085.2:c.169+929T>C|||||||||-1||HGNC|33270|YES|CCDS35406.1|||,G|intron_variant|MODIFIER|CT45A5|ENSG00000242284|Transcript|ENST00000491480|protein_coding||2/4|ENST00000491480.1:c.169+929T>C|||||||||-1||HGNC|33270||CCDS35406.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.407801;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.401294;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,117,1371	0/1:29,14:43:99:258,0,699	0/0:20,0:20:60:0,60,645	0/1:41,15:56:99:253,0,999	0/1:17,12:29:99:243,0,408	0/0:25,0:25:72:0,72,859	0/1:33,14:47:99:245,0,824	0/0:22,0:22:63:0,63,759	0/1:30,21:51:99:420,0,664	0/1:12,6:18:90:90,0,274	0/1:16,20:36:99:416,0,320
-chrX	140078339	.	T	C	2930.69	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=1.05;DP=406;ExcessHet=9.0714;FS=1.994;InbreedingCoeff=-0.4713;MLEAC=7;MLEAF=0.318;MQ=57.31;MQRankSum=0.195;NEGATIVE_TRAIN_SITE;QD=9.9;ReadPosRankSum=0.441;SOR=0.577;VQSLOD=-2.305;culprit=MQ;CSQ=C|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-298A8.2|ENSG00000229269|Transcript|ENST00000413328|lincRNA||1/2|ENST00000413328.1:n.124-475T>C|||||||||1||Clone_based_vega_gene||YES||||;cadd_phred=-1;gno_non_neuro_af_all=0.146135;gno_non_neuro_af_nfe=0.141665;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_nfe=0;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:32,0:32:90:0,90,1350	0/1:31,11:42:99:257,0,907	0/0:21,0:21:54:0,54,810	0/1:37,17:54:99:416,0,1121	0/1:14,21:35:99:624,0,371	0/0:41,0:41:99:0,101,1355	0/1:26,13:39:99:335,0,763	0/0:16,0:16:13:0,13,487	0/1:34,17:51:99:427,0,1020	0/1:16,10:26:99:269,0,453	0/1:26,23:49:99:620,0,746
-chrX	140780417	rs113890298	A	G	818.27	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-1.672;DB;DP=307;ExcessHet=9.0714;FS=13.067;InbreedingCoeff=-0.4558;MLEAC=7;MLEAF=0.318;MQ=55.06;MQRankSum=-2.028;NEGATIVE_TRAIN_SITE;QD=4.2;ReadPosRankSum=1.22;SOR=0.179;VQSLOD=-2.505;culprit=MQ;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||||||||;cadd_phred=-1;gno_non_neuro_af_all=0.0578861;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.0275727;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=0;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;highest_impact_order=64;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:36,0:36:99:.:.:0,99,1485:.	0/1:31,4:35:74:.:.:74,0,1325:.	0/0:26,0:26:69:.:.:0,69,1035:.	0/1:33,3:36:9:.:.:9,0,1424:.	0/1:14,4:18:99:.:.:126,0,489:.	0/0:36,0:36:99:.:.:0,99,1271:.	0|1:19,4:23:99:0|1:140780392_G_A:111,0,792:140780392	0/0:14,0:14:42:.:.:0,42,426:.	0/1:31,3:34:33:.:.:33,0,1156:.	0/1:13,7:20:99:.:.:255,0,497:.	0/1:22,7:29:99:.:.:228,0,810:.
-chrX	140785739	rs149295712	A	C	1949.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-0.057;DB;DP=424;ExcessHet=9.0714;FS=1.077;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=57.28;MQRankSum=-3.626;NEGATIVE_TRAIN_SITE;QD=6.21;ReadPosRankSum=-0.446;SOR=0.805;VQSLOD=-2.108;culprit=MQ;CSQ=C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.177T>G|ENSP00000359546.3:p.Phe59Leu|511/682|177/294|59/97|F/L|ttT/ttG|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.3)|benign(0.003)|;cadd_phred=-1;gno_non_neuro_af_all=0.0596689;gno_non_neuro_af_nfe=0.0522111;gno_non_neuro_nhomalt_all=4;gno_non_neuro_nhomalt_nfe=0;impactful;genic;highest_impact_order=14;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:36,0:36:99:.:.:0,101,1287:.	0|1:25,13:38:99:0|1:140785739_A_C:467,0,1032:140785739	0/0:16,0:16:34:.:.:0,34,507:.	0|1:37,10:47:99:0|1:140785739_A_C:306,0,1543:140785739	0|1:17,17:34:99:0|1:140785739_A_C:663,0,981:140785739	0/0:38,0:38:99:.:.:0,105,1285:.	0|1:45,5:50:71:0|1:140785739_A_C:71,0,1906:140785739	0/0:20,0:20:60:.:.:0,60,675:.	0|1:64,8:72:99:0|1:140785739_A_C:140,0,4030:140785739	0|1:28,6:34:99:0|1:140785739_A_C:167,0,1483:140785739	0|1:33,6:39:99:0|1:140785739_A_C:153,0,1884:140785739
-chrX	140785741	rs144554749	A	C	1949.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=-1.394;DB;DP=422;ExcessHet=9.0714;FS=1.692;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=57.32;MQRankSum=-3.694;NEGATIVE_TRAIN_SITE;QD=6.25;ReadPosRankSum=-0.164;SOR=0.822;VQSLOD=-2.102;culprit=MQRankSum;CSQ=C|missense_variant|MODERATE|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding|2/2||ENST00000370515.3:c.175T>G|ENSP00000359546.3:p.Phe59Val|509/682|175/294|59/97|F/V|Ttt/Gtt|||-1||HGNC|14332|YES|CCDS14675.1|tolerated_low_confidence(0.74)|benign(0)|;cadd_phred=-1;gno_non_neuro_af_all=0.103136;gno_non_neuro_af_all_filter;gno_non_neuro_af_nfe=0.0958019;gno_non_neuro_af_nfe_filter;gno_non_neuro_nhomalt_all=4;gno_non_neuro_nhomalt_all_filter;gno_non_neuro_nhomalt_nfe=0;gno_non_neuro_nhomalt_nfe_filter;impactful;genic;highest_impact_order=14;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PGT:PID:PL:PS	0/0:36,0:36:99:.:.:0,101,1287:.	0|1:26,13:39:99:0|1:140785739_A_C:467,0,1032:140785739	0/0:16,0:16:45:.:.:0,45,675:.	0|1:38,10:48:99:0|1:140785739_A_C:306,0,1543:140785739	0|1:17,17:34:99:0|1:140785739_A_C:663,0,981:140785739	0/0:38,0:38:99:.:.:0,105,1285:.	0|1:46,5:51:71:0|1:140785739_A_C:71,0,1906:140785739	0/0:20,0:20:60:.:.:0,60,675:.	0|1:61,8:69:99:0|1:140785739_A_C:140,0,4030:140785739	0|1:27,6:33:99:0|1:140785739_A_C:167,0,1483:140785739	0|1:32,6:38:99:0|1:140785739_A_C:153,0,1884:140785739
-chrX	140785855	rs146412887	A	G	2911.42	PASS	AC=7;AF=0.318;AN=22;BaseQRankSum=0.845;DB;DP=435;ExcessHet=9.0714;FS=2.507;InbreedingCoeff=-0.4667;MLEAC=7;MLEAF=0.318;MQ=57.08;MQRankSum=-0.85;NEGATIVE_TRAIN_SITE;QD=8.93;ReadPosRankSum=0.412;SOR=0.555;VQSLOD=-2.355;culprit=MQ;CSQ=G|intron_variant|MODIFIER|SPANXD|ENSG00000196406|Transcript|ENST00000370515|protein_coding||1/1|ENST00000370515.3:c.73-12T>C|||||||||-1||HGNC|14332|YES|CCDS14675.1|||;cadd_phred=-1;gno_non_neuro_af_all=0.155131;gno_non_neuro_af_nfe=0.149268;gno_non_neuro_nhomalt_all=2;gno_non_neuro_nhomalt_nfe=1;highest_impact_order=47;aff_only=C0011JZ,C0011K2,C0011K3,C0011KA,IP00FNP,IP00FNW,IP00FNY	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,103,1287	0/1:28,17:45:99:421,0,762	0/0:20,0:20:60:0,60,675	0/1:28,12:40:99:294,0,820	0/1:19,22:41:99:641,0,517	0/0:31,0:31:90:0,90,1058	0/1:35,11:46:99:244,0,1052	0/0:20,0:20:57:0,57,855	0/1:40,13:53:99:288,0,1191	0/1:32,18:50:99:465,0,936	0/1:30,21:51:99:576,0,870
diff --git a/example of results/PL_family_WGS_slivar_1664357562/reports/Log_info.txt b/example of results/PL_family_WGS_slivar_1664807682/reports/Log_info.txt
similarity index 100%
rename from example of results/PL_family_WGS_slivar_1664357562/reports/Log_info.txt
rename to example of results/PL_family_WGS_slivar_1664807682/reports/Log_info.txt
diff --git a/example of results/PL_family_WGS_slivar_1664357562/reports/Run_info.txt b/example of results/PL_family_WGS_slivar_1664807682/reports/Run_info.txt
similarity index 88%
rename from example of results/PL_family_WGS_slivar_1664357562/reports/Run_info.txt
rename to example of results/PL_family_WGS_slivar_1664807682/reports/Run_info.txt
index 031f0be3e8fca2525e992ea75c198d7afa8de4ef..561f62abf9bd505058cd49acbd29eb809e082b91 100644
--- a/example of results/PL_family_WGS_slivar_1664357562/reports/Run_info.txt	
+++ b/example of results/PL_family_WGS_slivar_1664807682/reports/Run_info.txt	
@@ -1,9 +1,9 @@
 Project (empty means no .git folder where the main.nf file is present):  origin git@gitlab.pasteur.fr:gmillot/slivar_vcf_extraction.git (fetch)
-Git info (empty means no .git folder where the main.nf file is present):  v1.3-5-g452bdf066b-dirty
+Git info (empty means no .git folder where the main.nf file is present):  v1.0-1-g39d9669a0a-dirty
 Cmd line: nextflow run slivar_vcf_extraction.nf -c slivar_vcf_extraction.config
 execution mode: local
 Manifest's pipeline version: null
-result path: /mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/results/PL_family_WGS_slivar_1664357562
+result path: /mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/results/PL_family_WGS_slivar_1664807682
 nextflow version: 21.04.2
 
 
@@ -16,5 +16,5 @@ workDir (directory where tasks temporary files are created): /mnt/c/Users/Gael/D
 
 USER VARIABLES:
 
-out_path: /mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/results/PL_family_WGS_slivar_1664357562
+out_path: /mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/results/PL_family_WGS_slivar_1664807682
 sample_path: /mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf
diff --git a/example of results/PL_family_WGS_slivar_1664807682/reports/dag.dot b/example of results/PL_family_WGS_slivar_1664807682/reports/dag.dot
new file mode 100644
index 0000000000000000000000000000000000000000..390268924aca5381a3821cf205fe9e1d46f70c4f
--- /dev/null
+++ b/example of results/PL_family_WGS_slivar_1664807682/reports/dag.dot	
@@ -0,0 +1,70 @@
+digraph "dag" {
+p1 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p1 -> p9 [label="vcf"];
+
+p2 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p2 -> p9 [label="fun"];
+
+p3 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p3 -> p9 [label="annot1"];
+
+p4 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p4 -> p9 [label="annot2"];
+
+p5 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p5 -> p9 [label="ped"];
+
+p6 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p6 -> p9 [label="sample_expr"];
+
+p7 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p7 -> p9 [label="pedigree_expr"];
+
+p8 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p8 -> p9 [label="filter"];
+
+p9 [label="slivar_extract"];
+p14 [label="slivar_tsv"];
+p9 -> p14 [label="vcf_ch1"];
+
+p9 [label="slivar_extract"];
+p15 [label="slivar_vcf_compress"];
+p9 -> p15 [label="vcf_ch2"];
+
+p10 [shape=point,label="",fixedsize=true,width=0.1];
+p14 [label="slivar_tsv"];
+p10 -> p14 [label="ped"];
+
+p11 [shape=point,label="",fixedsize=true,width=0.1];
+p14 [label="slivar_tsv"];
+p11 -> p14 [label="tsv_file"];
+
+p12 [shape=point,label="",fixedsize=true,width=0.1];
+p14 [label="slivar_tsv"];
+p12 -> p14 [label="tsv_sample"];
+
+p13 [shape=point,label="",fixedsize=true,width=0.1];
+p14 [label="slivar_tsv"];
+p13 -> p14 [label="tsv_info"];
+
+p16 [shape=point,label="",fixedsize=true,width=0.1];
+p19 [label="Backup"];
+p16 -> p19 [label="config_file"];
+
+p17 [shape=point,label="",fixedsize=true,width=0.1];
+p19 [label="Backup"];
+p17 -> p19 [label="log_file"];
+
+p18 [shape=point,label="",fixedsize=true,width=0.1];
+p19 [label="Backup"];
+p18 -> p19 [label="fun"];
+
+}
diff --git a/example of results/PL_family_WGS_slivar_1664357562/reports/report.html b/example of results/PL_family_WGS_slivar_1664807682/reports/report.html
similarity index 99%
rename from example of results/PL_family_WGS_slivar_1664357562/reports/report.html
rename to example of results/PL_family_WGS_slivar_1664807682/reports/report.html
index 13f79b61cceaca7388c403466ebcfe6b2652b826..f1d8fb7c524390434717c86e982f85e052eae636 100644
--- a/example of results/PL_family_WGS_slivar_1664357562/reports/report.html	
+++ b/example of results/PL_family_WGS_slivar_1664807682/reports/report.html	
@@ -18,11 +18,11 @@
 <head>
   <meta charset="utf-8">
   <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
-  <meta name="description" content="Nextflow workflow report for run id [suspicious_yalow]">
+  <meta name="description" content="Nextflow workflow report for run id [focused_volta]">
   <meta name="author" content="Paolo Di Tommaso, Phil Ewels">
   <link rel="icon" type="image/png" href="https://www.nextflow.io/img/favicon.png" />
 
-  <title>[suspicious_yalow] Nextflow Workflow Report</title>
+  <title>[focused_volta] Nextflow Workflow Report</title>
 
   <style type="text/css">
   /*!
@@ -137,7 +137,7 @@ table.DTCR_clonedTable.dataTable{position:absolute !important;background-color:r
         <li class="nav-item"><a class="nav-link" href="#tasks">Tasks</a></li>
       </ul>
       <span class="navbar-text">
-        [suspicious_yalow]
+        [focused_volta]
       </span>
     </div>
   </nav>
@@ -146,7 +146,7 @@ table.DTCR_clonedTable.dataTable{position:absolute !important;background-color:r
     <div class="container">
 
       <h1 class="display-3">Nextflow workflow report</h1>
-      <h2 class="text-muted mb-4"><samp>[suspicious_yalow]</samp> </h2>
+      <h2 class="text-muted mb-4"><samp>[focused_volta]</samp> </h2>
 
       
           <div class="alert alert-success mb-4">
@@ -157,13 +157,13 @@ table.DTCR_clonedTable.dataTable{position:absolute !important;background-color:r
       <dl>
         <dt>Run times</dt>
         <dd>
-          <span id="workflow_start">28-Sep-2022 11:32:42</span> - <span id="workflow_complete">28-Sep-2022 11:32:53</span>
-          (<span id="completed_fromnow"></span>duration: <strong>10.8s</strong>)
+          <span id="workflow_start">03-Oct-2022 16:34:43</span> - <span id="workflow_complete">03-Oct-2022 16:34:55</span>
+          (<span id="completed_fromnow"></span>duration: <strong>12.6s</strong>)
         </dd>
 
         <dl>
           <div class="progress" style="height: 1.6rem; margin: 1.2rem auto; border-radius: 0.20rem;">
-            <div style="width: 100.0%" class="progress-bar bg-success" data-toggle="tooltip" data-placement="top" title="3 tasks succeeded"><span class="text-truncate">&nbsp; 3 succeeded &nbsp;</span></div>
+            <div style="width: 100.0%" class="progress-bar bg-success" data-toggle="tooltip" data-placement="top" title="5 tasks succeeded"><span class="text-truncate">&nbsp; 5 succeeded &nbsp;</span></div>
             <div style="width: 0.0%" class="progress-bar bg-secondary" data-toggle="tooltip" data-placement="top" title="0 tasks were cached"><span class="text-truncate">&nbsp; 0 cached &nbsp;</span></div>
             <div style="width: 0.0%" class="progress-bar bg-warning" data-toggle="tooltip" data-placement="top" title="0 tasks reported and error and were ignored"><span class="text-truncate">&nbsp; 0 ignored &nbsp;</span></div>
             <div style="width: 0.0%" class="progress-bar bg-danger" data-toggle="tooltip" data-placement="top" title="0 tasks failed"><span class="text-truncate">&nbsp; 0 failed &nbsp;</span></div>
@@ -194,11 +194,11 @@ table.DTCR_clonedTable.dataTable{position:absolute !important;background-color:r
 
         
           <dt class="col-sm-3">Script ID</dt>
-          <dd class="col-sm-9"><code>b387dfea1094fd5899f166cfbb37f1e0</code></dd>
+          <dd class="col-sm-9"><code>b87d6c38210d9b4a1d499d15b1c6cbd4</code></dd>
         
 
         <dt class="col-sm-3">Workflow session</dt>
-        <dd class="col-sm-9"><code>ea497845-b633-4ffc-b380-3c83bc468222</code></dd>
+        <dd class="col-sm-9"><code>06a96f6a-23c3-4218-a070-438fd6c89dad</code></dd>
 
         
 
@@ -1029,7 +1029,7 @@ $(function() {
 
   // Nextflow report data
   window.data = { "trace":[
-{"task_id":"3","hash":"43\/9f2a52","native_id":"4517","process":"Backup","module":"-","container":"\/mnt\/c\/Users\/Gael\/Documents\/singularity\/gmillot-bash-extended_v4.0-gitlab_v8.0.img","tag":"-","name":"Backup","status":"COMPLETED","exit":"0","submit":"1664357563464","start":"1664357563551","complete":"1664357564319","duration":"855","realtime":"8","%cpu":"10.1","%mem":"0.0","rss":"0","vmem":"0","peak_rss":"0","peak_vmem":"0","rchar":"106576","wchar":"339","syscr":"189","syscw":"14","read_bytes":"329728","write_bytes":"0","attempt":"1","workdir":"\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/work\/43\/9f2a52036364e9e6d791086c88465c","script":"\n    echo -e \"full .nextflow.log is in: \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\nThe one in the result folder is not complete (miss the end)\" > Log_info.txt\n    ","scratch":"-","queue":"-","cpus":"1","memory":"3221225472","disk":"-","time":"-","env":"sample_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf\nfun_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin\/slivar-functions.js\nped_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr=--sample-expr \'all:sample.DP >= 0\'\npedigree_expr= \nfilter=false\ntsv_sample=all\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i all\nsystem_exec=local\nout_path_ini=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\nout_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\/PL_family_WGS_slivar_1664357562\nqueue=common,dedicated\nqos=--qos=ultrafast\nadd_options= \nPATH=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin:$PATH\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"0"},{"task_id":"2","hash":"cf\/fc450f","native_id":"4553","process":"slivar","module":"-","container":"\/mnt\/c\/Users\/Gael\/Documents\/singularity\/gmillot-slivar_v1.0-gitlab_v8.11.img","tag":"-","name":"slivar","status":"COMPLETED","exit":"0","submit":"1664357563516","start":"1664357563586","complete":"1664357573302","duration":"9786","realtime":"9183","%cpu":"51.2","%mem":"1.9","rss":"2070405120","vmem":"2094182400","peak_rss":"2070405120","peak_vmem":"2094194688","rchar":"459590658","wchar":"211626","syscr":"50245","syscw":"159","read_bytes":"5229568","write_bytes":"24576","attempt":"1","workdir":"\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/work\/cf\/fc450f29a322836276d01581e4da50","script":"\n    #!\/bin\/bash -ue\n\n    # add the modification of the pedigree if \n    slivar expr --js slivar-functions.js -g cadd-1.6-SNVs-phred10-GRCh37.zip -g gnomad-2.1.1-genome-GRCh37.zip --vcf Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf --ped Dyslexia.pedigree.txt --sample-expr \'all:sample.DP >= 0\'     -o \"res.vcf\"\n    slivar tsv --ped Dyslexia.pedigree.txt -s all -i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i all res.vcf > res.tsv\n    ","scratch":"-","queue":"-","cpus":"1","memory":"64424509440","disk":"-","time":"-","env":"sample_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf\nfun_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin\/slivar-functions.js\nped_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr=--sample-expr \'all:sample.DP >= 0\'\npedigree_expr= \nfilter=false\ntsv_sample=all\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i all\nsystem_exec=local\nout_path_ini=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\nout_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\/PL_family_WGS_slivar_1664357562\nqueue=common,dedicated\nqos=--qos=ultrafast\nadd_options= \nPATH=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin:$PATH\n","error_action":"-","vol_ctxt":"50083","inv_ctxt":"142"},{"task_id":"1","hash":"c2\/724f64","native_id":"4610","process":"WorkflowVersion","module":"-","container":"\/mnt\/c\/Users\/Gael\/Documents\/singularity\/gmillot-bash-extended_v4.0-gitlab_v8.0.img","tag":"-","name":"WorkflowVersion","status":"COMPLETED","exit":"0","submit":"1664357563565","start":"1664357563650","complete":"1664357564802","duration":"1237","realtime":"469","%cpu":"17.7","%mem":"0.0","rss":"3280896","vmem":"20156416","peak_rss":"3280896","peak_vmem":"20156416","rchar":"148930","wchar":"1609","syscr":"273","syscw":"35","read_bytes":"3633152","write_bytes":"0","attempt":"1","workdir":"\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/work\/c2\/724f642fce98a7277b0c4c469c9a86","script":"\n    echo \"Project (empty means no .git folder where the main.nf file is present): \" $(git -C \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction remote -v | head -n 1) > Run_info.txt # works only if the main script run is located in a directory that has a .git folder, i.e., that is connected to a distant repo\n    echo \"Git info (empty means no .git folder where the main.nf file is present): \" $(git -C \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction describe --abbrev=10 --dirty --always --tags) >> Run_info.txt # idem. Provide the small commit number of the script and nextflow.config used in the execution\n    echo \"Cmd line: nextflow run slivar_vcf_extraction.nf -c slivar_vcf_extraction.config\" >> Run_info.txt\n    echo \"execution mode\": local >> Run_info.txt\n    modules= # this is just to deal with variable interpretation during the creation of the .command.sh file by nextflow. See also $modules below\n    if [[ ! -z $modules ]] ; then\n        echo \"loaded modules (according to specification by the user thanks to the --modules argument of main.nf)\":  >> Run_info.txt\n    fi\n    echo \"Manifest\'s pipeline version: null\" >> Run_info.txt\n    echo \"result path: \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\/PL_family_WGS_slivar_1664357562\" >> Run_info.txt\n    echo \"nextflow version: 21.04.2\" >> Run_info.txt\n    echo -e \"\\n\\nIMPLICIT VARIABLES:\\n\\nlaunchDir (directory where the workflow is run): \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\\nprojectDir (directory where the main.nf script is located): \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\\nworkDir (directory where tasks temporary files are created): \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/work\" >> Run_info.txt\n    echo -e \"\\n\\nUSER VARIABLES:\\n\\nout_path: \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\/PL_family_WGS_slivar_1664357562\\nsample_path: \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf\" >> Run_info.txt\n    ","scratch":"-","queue":"-","cpus":"1","memory":"3221225472","disk":"-","time":"-","env":"sample_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf\nfun_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin\/slivar-functions.js\nped_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr=--sample-expr \'all:sample.DP >= 0\'\npedigree_expr= \nfilter=false\ntsv_sample=all\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i 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};
+{"task_id":"2","hash":"01\/27568e","native_id":"30957","process":"slivar_extract","module":"-","container":"\/mnt\/c\/Users\/gmillot\/singularity\/gmillot-slivar_v2.0-gitlab_v9.1.img","tag":"-","name":"slivar_extract","status":"COMPLETED","exit":"0","submit":"1664807684296","start":"1664807684394","complete":"1664807694321","duration":"10025","realtime":"9270","%cpu":"51.5","%mem":"1.9","rss":"2010443776","vmem":"2027454464","peak_rss":"2010443776","peak_vmem":"2027470848","rchar":"459619277","wchar":"48902","syscr":"50216","syscw":"51","read_bytes":"4819968","write_bytes":"24576","attempt":"1","workdir":"\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/work\/01\/27568e269289082b0e2124e466a8c7","script":"\n    #!\/bin\/bash -ue\n    slivar expr --js slivar-functions.js -g cadd-1.6-SNVs-phred10-GRCh37.zip -g gnomad-2.1.1-genome-GRCh37.zip --vcf Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf --ped Dyslexia.pedigree.txt --sample-expr \'all:true\'     -o \"res.vcf\"\n    ","scratch":"-","queue":"-","cpus":"1","memory":"64424509440","disk":"-","time":"-","env":"sample_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf\nfun_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin\/slivar-functions.js\nped_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr=--sample-expr \'all:true\'\npedigree_expr= \nfilter=false\ntsv_file=true\ntsv_sample=all\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i all\nsystem_exec=local\nout_path_ini=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\nout_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\/PL_family_WGS_slivar_1664807682\nqueue=common,dedicated\nqos=--qos=ultrafast\nadd_options= \nPATH=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin:$PATH\n","error_action":"-","vol_ctxt":"49391","inv_ctxt":"83"},{"task_id":"3","hash":"2c\/6005d5","native_id":"30992","process":"Backup","module":"-","container":"\/mnt\/c\/Users\/gmillot\/singularity\/gmillot-bash-extended_v4.0-gitlab_v8.0.img","tag":"-","name":"Backup","status":"COMPLETED","exit":"0","submit":"1664807684347","start":"1664807684431","complete":"1664807685183","duration":"836","realtime":"6","%cpu":"20.5","%mem":"0.0","rss":"0","vmem":"0","peak_rss":"0","peak_vmem":"0","rchar":"106673","wchar":"345","syscr":"189","syscw":"14","read_bytes":"329728","write_bytes":"0","attempt":"1","workdir":"\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/work\/2c\/6005d590903938fd5884834b371edc","script":"\n    echo -e \"full .nextflow.log is in: \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\nThe one in the result folder is not complete (miss the end)\" > Log_info.txt\n    ","scratch":"-","queue":"-","cpus":"1","memory":"3221225472","disk":"-","time":"-","env":"sample_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf\nfun_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin\/slivar-functions.js\nped_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr=--sample-expr \'all:true\'\npedigree_expr= \nfilter=false\ntsv_file=true\ntsv_sample=all\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i all\nsystem_exec=local\nout_path_ini=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\nout_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\/PL_family_WGS_slivar_1664807682\nqueue=common,dedicated\nqos=--qos=ultrafast\nadd_options= \nPATH=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin:$PATH\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"0"},{"task_id":"1","hash":"89\/bbad7c","native_id":"31038","process":"WorkflowVersion","module":"-","container":"\/mnt\/c\/Users\/gmillot\/singularity\/gmillot-bash-extended_v4.0-gitlab_v8.0.img","tag":"-","name":"WorkflowVersion","status":"COMPLETED","exit":"0","submit":"1664807684392","start":"1664807684476","complete":"1664807685591","duration":"1199","realtime":"383","%cpu":"18.8","%mem":"0.0","rss":"3293184","vmem":"20156416","peak_rss":"3293184","peak_vmem":"20156416","rchar":"137032","wchar":"1615","syscr":"266","syscw":"35","read_bytes":"3517440","write_bytes":"0","attempt":"1","workdir":"\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/work\/89\/bbad7cc1955cae43ec30d3b362fabb","script":"\n    echo \"Project (empty means no .git folder where the main.nf file is present): \" $(git -C \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction remote -v | head -n 1) > Run_info.txt # works only if the main script run is located in a directory that has a .git folder, i.e., that is connected to a distant repo\n    echo \"Git info (empty means no .git folder where the main.nf file is present): \" $(git -C \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction describe --abbrev=10 --dirty --always --tags) >> Run_info.txt # idem. Provide the small commit number of the script and nextflow.config used in the execution\n    echo \"Cmd line: nextflow run slivar_vcf_extraction.nf -c slivar_vcf_extraction.config\" >> Run_info.txt\n    echo \"execution mode\": local >> Run_info.txt\n    modules= # this is just to deal with variable interpretation during the creation of the .command.sh file by nextflow. See also $modules below\n    if [[ ! -z $modules ]] ; then\n        echo \"loaded modules (according to specification by the user thanks to the --modules argument of main.nf)\":  >> Run_info.txt\n    fi\n    echo \"Manifest\'s pipeline version: null\" >> Run_info.txt\n    echo \"result path: \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\/PL_family_WGS_slivar_1664807682\" >> Run_info.txt\n    echo \"nextflow version: 21.04.2\" >> Run_info.txt\n    echo -e \"\\n\\nIMPLICIT VARIABLES:\\n\\nlaunchDir (directory where the workflow is run): \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\\nprojectDir (directory where the main.nf script is located): \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\\nworkDir (directory where tasks temporary files are created): \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/work\" >> Run_info.txt\n    echo -e \"\\n\\nUSER VARIABLES:\\n\\nout_path: \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\/PL_family_WGS_slivar_1664807682\\nsample_path: \/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf\" >> Run_info.txt\n    ","scratch":"-","queue":"-","cpus":"1","memory":"3221225472","disk":"-","time":"-","env":"sample_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf\nfun_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin\/slivar-functions.js\nped_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr=--sample-expr \'all:true\'\npedigree_expr= \nfilter=false\ntsv_file=true\ntsv_sample=all\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i all\nsystem_exec=local\nout_path_ini=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\nout_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\/PL_family_WGS_slivar_1664807682\nqueue=common,dedicated\nqos=--qos=ultrafast\nadd_options= \nPATH=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin:$PATH\n","error_action":"-","vol_ctxt":"11","inv_ctxt":"0"},{"task_id":"5","hash":"48\/02cb61","native_id":"31888","process":"slivar_vcf_compress","module":"-","container":"\/mnt\/c\/Users\/gmillot\/singularity\/gmillot-slivar_v2.0-gitlab_v9.1.img","tag":"-","name":"slivar_vcf_compress","status":"COMPLETED","exit":"0","submit":"1664807694372","start":"1664807694421","complete":"1664807694951","duration":"579","realtime":"70","%cpu":"30.1","%mem":"0.0","rss":"0","vmem":"0","peak_rss":"0","peak_vmem":"0","rchar":"221825","wchar":"10489","syscr":"294","syscw":"15","read_bytes":"1383424","write_bytes":"0","attempt":"1","workdir":"\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/work\/48\/02cb61a13d995e40326166b35d5dc1","script":"\n    #!\/bin\/bash -ue\n    bgzip -cf -l 9 res.vcf > res.vcf.gz # htslib command, -l 9 best compression, -c to standard output, -f to force without asking\n    tabix -p vcf res.vcf.gz # htslib command\n    ","scratch":"-","queue":"-","cpus":"1","memory":"64424509440","disk":"-","time":"-","env":"sample_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf\nfun_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin\/slivar-functions.js\nped_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr=--sample-expr \'all:true\'\npedigree_expr= \nfilter=false\ntsv_file=true\ntsv_sample=all\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i all\nsystem_exec=local\nout_path_ini=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\nout_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\/PL_family_WGS_slivar_1664807682\nqueue=common,dedicated\nqos=--qos=ultrafast\nadd_options= \nPATH=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin:$PATH\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"0"},{"task_id":"4","hash":"6d\/2633c5","native_id":"32040","process":"slivar_tsv","module":"-","container":"\/mnt\/c\/Users\/gmillot\/singularity\/gmillot-slivar_v2.0-gitlab_v9.1.img","tag":"-","name":"slivar_tsv","status":"COMPLETED","exit":"0","submit":"1664807694962","start":"1664807695051","complete":"1664807695722","duration":"760","realtime":"283","%cpu":"20.8","%mem":"0.0","rss":"5492736","vmem":"13643776","peak_rss":"5492736","peak_vmem":"13660160","rchar":"362586","wchar":"166427","syscr":"364","syscw":"120","read_bytes":"4771840","write_bytes":"0","attempt":"1","workdir":"\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/work\/6d\/2633c53a2e81e9329af1b85e596a15","script":"\n    #!\/bin\/bash -ue\n    if [[ true == true ]] ; then \n        slivar tsv --ped Dyslexia.pedigree.txt -s all -i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i all res.vcf > res.tsv\n        gzip -f res.tsv \n    fi\n    ","scratch":"-","queue":"-","cpus":"1","memory":"64424509440","disk":"-","time":"-","env":"sample_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf\nfun_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin\/slivar-functions.js\nped_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr=--sample-expr \'all:true\'\npedigree_expr= \nfilter=false\ntsv_file=true\ntsv_sample=all\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i all\nsystem_exec=local\nout_path_ini=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\nout_path=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/results\/PL_family_WGS_slivar_1664807682\nqueue=common,dedicated\nqos=--qos=ultrafast\nadd_options= \nPATH=\/mnt\/c\/Users\/Gael\/Documents\/Git_projects\/slivar_vcf_extraction\/bin:$PATH\n","error_action":"-","vol_ctxt":"196","inv_ctxt":"0"}], 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21825,"minLabel":"slivar_vcf_compress","maxLabel":"slivar_vcf_compress","q1Label":"slivar_vcf_compress","q2Label":"slivar_vcf_compress","q3Label":"slivar_vcf_compress"},"cpu":{"mean":30.1,"min":30.1,"q1":30.1,"q2":30.1,"q3":30.1,"max":30.1,"minLabel":"slivar_vcf_compress","maxLabel":"slivar_vcf_compress","q1Label":"slivar_vcf_compress","q2Label":"slivar_vcf_compress","q3Label":"slivar_vcf_compress"},"time":{"mean":70,"min":70,"q1":70,"q2":70,"q3":70,"max":70,"minLabel":"slivar_vcf_compress","maxLabel":"slivar_vcf_compress","q1Label":"slivar_vcf_compress","q2Label":"slivar_vcf_compress","q3Label":"slivar_vcf_compress"},"writes":{"mean":10489,"min":10489,"q1":10489,"q2":10489,"q3":10489,"max":10489,"minLabel":"slivar_vcf_compress","maxLabel":"slivar_vcf_compress","q1Label":"slivar_vcf_compress","q2Label":"slivar_vcf_compress","q3Label":"slivar_vcf_compress"}},{"cpuUsage":{"mean":20.8,"min":20.8,"q1":20.8,"q2":20.8,"q3":20.8,"max":20.8,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"},"process":"slivar_tsv","mem":{"mean":5492736,"min":5492736,"q1":5492736,"q2":5492736,"q3":5492736,"max":5492736,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"},"memUsage":{"mean":0.01,"min":0.01,"q1":0.01,"q2":0.01,"q3":0.01,"max":0.01,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"},"timeUsage":null,"vmem":{"mean":13660160,"min":13660160,"q1":13660160,"q2":13660160,"q3":13660160,"max":13660160,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"},"reads":{"mean":362586,"min":362586,"q1":362586,"q2":362586,"q3":362586,"max":362586,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"},"cpu":{"mean":20.8,"min":20.8,"q1":20.8,"q2":20.8,"q3":20.8,"max":20.8,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"},"time":{"mean":283,"min":283,"q1":283,"q2":283,"q3":283,"max":283,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"},"writes":{"mean":166427,"min":166427,"q1":166427,"q2":166427,"q3":166427,"max":166427,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"}}] };
 
   </script>
 
diff --git a/example of results/PL_family_WGS_slivar_1664357562/reports/slivar-functions.js b/example of results/PL_family_WGS_slivar_1664807682/reports/slivar-functions.js
similarity index 100%
rename from example of results/PL_family_WGS_slivar_1664357562/reports/slivar-functions.js
rename to example of results/PL_family_WGS_slivar_1664807682/reports/slivar-functions.js
diff --git a/example of results/PL_family_WGS_slivar_1664357562/reports/slivar_vcf_extraction.config b/example of results/PL_family_WGS_slivar_1664807682/reports/slivar_vcf_extraction.config
similarity index 90%
rename from example of results/PL_family_WGS_slivar_1664357562/reports/slivar_vcf_extraction.config
rename to example of results/PL_family_WGS_slivar_1664807682/reports/slivar_vcf_extraction.config
index 533248d99e8146ca930897876e5dba916f134684..18883002ad6c07990922ce31c580724fc6f06652 100644
--- a/example of results/PL_family_WGS_slivar_1664357562/reports/slivar_vcf_extraction.config	
+++ b/example of results/PL_family_WGS_slivar_1664807682/reports/slivar_vcf_extraction.config	
@@ -27,11 +27,12 @@ env {
 
     annot1_path = "/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/cadd-1.6-SNVs-phred10-GRCh37.zip" // path of the cadd annotation file. Example : annot1_path="/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/cadd-1.6-SNVs-phred10-GRCh37.zip", annot1_path="/pasteur/zeus/projets/p02/ghfc_wgs_zeus/references/GRCh37/slivar-gnotate/cadd-1.6-SNVs-phred10-GRCh37.zip" // cadd annotation
     annot2_path = "/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/gnomad-2.1.1-genome-GRCh37.zip" // path of gnomad annotation file. Example : annot2_path="/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/gnomad-2.1.1-genome-GRCh37.zip", annot2_path="/pasteur/zeus/projets/p02/ghfc_wgs_zeus/references/GRCh37/slivar-gnotate/gnomad-2.1.1-genome-GRCh37.zip" // gnomad annotation
-    sample_expr = "--sample-expr 'all:sample.DP >= 0'" // expression to use for the --sample-expr option of slivar. Example: sample_expr = "--sample-expr 'high_quality:sample.GQ >= 10'". Before the colon is the name of the new field added in the INFO field of the VCF. Write " " if no selection wanted (only annotation). "--sample-expr 'all:sample.DP >= 0'" Must be used if no filter wanted but tsv wanted. Another example: "--sample-expr 'all:sample.GQ == \".\"'"
+    sample_expr = "--sample-expr 'all:true'" // expression to use for the --sample-expr option of slivar. Example: sample_expr = "--sample-expr 'high_quality:sample.GQ >= 10'". Before the colon is the name of the new field added in the INFO field of the VCF. Write " " if no selection wanted (only annotation). Write "--sample-expr 'all:true'" if no filter wanted but tsv wanted. Warning: all:sample.DP >= 0 is not equivalent to all:true. Of note, "--sample-expr 'all:sample.GQ == \".\"'" is correctly written in the .command.sh file in the work dir of nextflow, but does not seem to work in selecting the empty GQ
     pedigree_expr = " " // expression to use for the --family-expr or --trio or --group-expr option of slivar in order to filter the data according to pedigree info or VCF info (depends on the .js file defined by fun_path above). See https://github.com/brentp/slivar#commands for details. Example: "--family-expr 'aff_only:fam.every(find_het_aff_hom_ref_unaff)'". Write " " if no selection wanted (only annotation). Of note, for no filtering, pedigree_expr="all:fam.every(function(s){return s.affected || s.unaffected})" does not work, we have to use --sample-expr
     filter = "false" // if false, the output VCF is only labeled in the VCF INFO field according to the pedigree_expr parameter. If true, take only the labeled lines (variants) of the output VCF. Of note, true add the --pass-only argument to the slivar expr
-    tsv_sample = "all" // mandatory -s option of the slivar tsv command. Example sample="aff_only". What is indicated must be a field of the INFO field of the vcf, added using the sample_expr or pedigree_expr parameter
-    tsv_info = "-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i all" // -i option of the slivar tsv command that extracts data from the INFO field of the vcf file (https://github.com/brentp/slivar#tsv) for the tsv file output. Example : "-i AC -i AF -i AN". Warning: if one of the -i is not in the vcf file, it will generate an error. Thus, be carefull with what is used in the sample_expr or pedigree_expr parameter
+    tsv_file = "true" // if true, return a .tsv file of the .vcf file output
+    tsv_sample = "all" // mandatory -s option of the slivar tsv command. Example sample="aff_only". What is indicated must be a field of the INFO field of the vcf, added using the sample_expr or pedigree_expr parameter. Ignored if tsv_file == "true"
+    tsv_info = "-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i all" // -i option of the slivar tsv command that extracts data from the INFO field of the vcf file (https://github.com/brentp/slivar#tsv) for the tsv file output. Example : "-i AC -i AF -i AN". Warning: if one of the -i is not in the vcf file, it will generate an error. Thus, be carefull with what is used in the sample_expr or pedigree_expr parameter. Ignored if tsv_file == "true"
 }
 
 //////// end variables that will be used only in the main.nf
@@ -137,7 +138,7 @@ singularity {
     }else if(system_exec == 'slurm_local'){
         cacheDir = 'singularity' // "$baseDir/singularity" can be used but do not forget double quotes.
     }else{
-        cacheDir = '/mnt/c/Users/Gael/Documents/singularity' // "$baseDir/singularity" can be used but do not forget double quotes.
+        cacheDir = '/mnt/c/Users/gmillot/singularity' // "$baseDir/singularity" can be used but do not forget double quotes.
     }
 }
 
@@ -169,7 +170,7 @@ process {
     }
 
     withLabel: slivar {
-        container='gmillot/slivar_v1.0:gitlab_v8.11'
+        container='gmillot/slivar_v2.0:gitlab_v9.1'
         cpus=1
         memory='60G'
     }
diff --git a/example of results/PL_family_WGS_slivar_1664357562/reports/timeline.html b/example of results/PL_family_WGS_slivar_1664807682/reports/timeline.html
similarity index 99%
rename from example of results/PL_family_WGS_slivar_1664357562/reports/timeline.html
rename to example of results/PL_family_WGS_slivar_1664807682/reports/timeline.html
index d1d31f36e4fe38d16f4e06a1902df4f6aa4f0e38..ef7bc1641cb9e2e9f7e128895455be02df920a69 100644
--- a/example of results/PL_family_WGS_slivar_1664357562/reports/timeline.html	
+++ b/example of results/PL_family_WGS_slivar_1664807682/reports/timeline.html	
@@ -205,13 +205,15 @@ $(function() {
 
   // Nextflow report data
   window.data = {
-    "elapsed": "11.2s",
-    "beginningMillis": 1664357562635,
-    "endingMillis": 1664357573819,
+    "elapsed": "13s",
+    "beginningMillis": 1664807683271,
+    "endingMillis": 1664807696244,
     "processes": [
-        {"label": "Backup", "cached": false, "index": 0, "times": [{"starting_time": 1664357563464, "ending_time": 1664357563551}, {"starting_time": 1664357563551, "ending_time": 1664357563559, "label": "855ms \/ 0"}, {"starting_time": 1664357563559, "ending_time": 1664357564319}]},
-        {"label": "slivar", "cached": false, "index": 1, "times": [{"starting_time": 1664357563516, "ending_time": 1664357563586}, {"starting_time": 1664357563586, "ending_time": 1664357572769, "label": "9.8s \/ 1.9 GB"}, {"starting_time": 1664357572769, "ending_time": 1664357573302}]},
-        {"label": "WorkflowVersion", "cached": false, "index": 2, "times": [{"starting_time": 1664357563565, "ending_time": 1664357563650}, {"starting_time": 1664357563650, "ending_time": 1664357564119, "label": "1.2s \/ 3.1 MB"}, {"starting_time": 1664357564119, "ending_time": 1664357564802}]}
+        {"label": "slivar_extract", "cached": false, "index": 0, "times": [{"starting_time": 1664807684296, "ending_time": 1664807684394}, {"starting_time": 1664807684394, "ending_time": 1664807693664, "label": "10s \/ 1.9 GB"}, {"starting_time": 1664807693664, "ending_time": 1664807694321}]},
+        {"label": "Backup", "cached": false, "index": 1, "times": [{"starting_time": 1664807684347, "ending_time": 1664807684431}, {"starting_time": 1664807684431, "ending_time": 1664807684437, "label": "836ms \/ 0"}, {"starting_time": 1664807684437, "ending_time": 1664807685183}]},
+        {"label": "WorkflowVersion", "cached": false, "index": 2, "times": [{"starting_time": 1664807684392, "ending_time": 1664807684476}, {"starting_time": 1664807684476, "ending_time": 1664807684859, "label": "1.2s \/ 3.1 MB"}, {"starting_time": 1664807684859, "ending_time": 1664807685591}]},
+        {"label": "slivar_vcf_compress", "cached": false, "index": 3, "times": [{"starting_time": 1664807694372, "ending_time": 1664807694421}, {"starting_time": 1664807694421, "ending_time": 1664807694491, "label": "579ms \/ 0"}, {"starting_time": 1664807694491, "ending_time": 1664807694951}]},
+        {"label": "slivar_tsv", "cached": false, "index": 4, "times": [{"starting_time": 1664807694962, "ending_time": 1664807695051}, {"starting_time": 1664807695051, "ending_time": 1664807695334, "label": "760ms \/ 5.2 MB"}, {"starting_time": 1664807695334, "ending_time": 1664807695722}]}
     ]
 }
 ;
diff --git a/example of results/PL_family_WGS_slivar_1664807682/reports/trace.txt b/example of results/PL_family_WGS_slivar_1664807682/reports/trace.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c1614aa0e931c20fe13587311fe00cbdd98362d9
--- /dev/null
+++ b/example of results/PL_family_WGS_slivar_1664807682/reports/trace.txt	
@@ -0,0 +1,6 @@
+task_id	hash	native_id	name	status	exit	submit	duration	realtime	%cpu	peak_rss	peak_vmem	rchar	wchar
+3	2c/6005d5	30992	Backup	COMPLETED	0	2022-10-03 16:34:44.347	836ms	6ms	20.5%	0	0	104.2 KB	345 B
+1	89/bbad7c	31038	WorkflowVersion	COMPLETED	0	2022-10-03 16:34:44.392	1.2s	383ms	18.8%	3.1 MB	19.2 MB	133.8 KB	1.6 KB
+2	01/27568e	30957	slivar_extract	COMPLETED	0	2022-10-03 16:34:44.296	10s	9.3s	51.5%	1.9 GB	1.9 GB	438.3 MB	47.8 KB
+5	48/02cb61	31888	slivar_vcf_compress	COMPLETED	0	2022-10-03 16:34:54.372	579ms	70ms	30.1%	0	0	216.6 KB	10.2 KB
+4	6d/2633c5	32040	slivar_tsv	COMPLETED	0	2022-10-03 16:34:54.962	760ms	283ms	20.8%	5.2 MB	13 MB	354.1 KB	162.5 KB
diff --git a/example of results/PL_family_WGS_slivar_1664807682/res.tsv.gz b/example of results/PL_family_WGS_slivar_1664807682/res.tsv.gz
new file mode 100644
index 0000000000000000000000000000000000000000..6d27f267bbc7ba93d2d09045cdcdb3d96fb959d6
Binary files /dev/null and b/example of results/PL_family_WGS_slivar_1664807682/res.tsv.gz differ
diff --git a/example of results/PL_family_WGS_slivar_1664807682/res.vcf.gz b/example of results/PL_family_WGS_slivar_1664807682/res.vcf.gz
new file mode 100644
index 0000000000000000000000000000000000000000..a8ad3caacf8afa0a47c5cda9d29a28120d019364
Binary files /dev/null and b/example of results/PL_family_WGS_slivar_1664807682/res.vcf.gz differ
diff --git a/example of results/PL_family_WGS_slivar_1664807682/res.vcf.gz.tbi b/example of results/PL_family_WGS_slivar_1664807682/res.vcf.gz.tbi
new file mode 100644
index 0000000000000000000000000000000000000000..30159f7e3775c013b8f9dcc04ff9ff4356196244
Binary files /dev/null and b/example of results/PL_family_WGS_slivar_1664807682/res.vcf.gz.tbi differ
diff --git a/example of results/PL_family_WGS_slivar_1664358140/reports/Log_info.txt b/example of results/PL_family_WGS_slivar_1664813804/reports/Log_info.txt
similarity index 100%
rename from example of results/PL_family_WGS_slivar_1664358140/reports/Log_info.txt
rename to example of results/PL_family_WGS_slivar_1664813804/reports/Log_info.txt
diff --git a/example of results/PL_family_WGS_slivar_1664358140/reports/Run_info.txt b/example of results/PL_family_WGS_slivar_1664813804/reports/Run_info.txt
similarity index 86%
rename from example of results/PL_family_WGS_slivar_1664358140/reports/Run_info.txt
rename to example of results/PL_family_WGS_slivar_1664813804/reports/Run_info.txt
index 9a32f792bdea9cf6af2f927d2caee34fd0c6ec9d..218236d39dc8c2a42f107fc9e8e17ea5235087a0 100644
--- a/example of results/PL_family_WGS_slivar_1664358140/reports/Run_info.txt	
+++ b/example of results/PL_family_WGS_slivar_1664813804/reports/Run_info.txt	
@@ -1,10 +1,10 @@
 Project (empty means no .git folder where the main.nf file is present): 
 Git info (empty means no .git folder where the main.nf file is present): 
-Cmd line: nextflow run --modules /opt/gensoft/exe/java/13.0.2/bin/java,/opt/gensoft/exe/singularity/3.8.3/bin/singularity,/opt/gensoft/exe/git/2.25.0/bin/git slivar_vcf_extraction_v1.6.nf -c slivar_vcf_extraction.config
+Cmd line: nextflow run --modules /opt/gensoft/exe/java/13.0.2/bin/java,/opt/gensoft/exe/singularity/3.8.3/bin/singularity,/opt/gensoft/exe/git/2.25.0/bin/git slivar_vcf_extraction_v2.0.nf -c slivar_vcf_extraction.config -resume
 execution mode: slurm
 loaded modules (according to specification by the user thanks to the --modules argument of main.nf): /opt/gensoft/exe/java/13.0.2/bin/java,/opt/gensoft/exe/singularity/3.8.3/bin/singularity,/opt/gensoft/exe/git/2.25.0/bin/git
 Manifest's pipeline version: null
-result path: /pasteur/zeus/projets/p01/BioIT/gmillot/08002_bourgeron/results/PL_family_WGS_slivar_1664358140
+result path: /pasteur/zeus/projets/p01/BioIT/gmillot/08002_bourgeron/results/PL_family_WGS_slivar_1664813804
 nextflow version: 21.04.1
 
 
@@ -17,5 +17,5 @@ workDir (directory where tasks temporary files are created): /pasteur/zeus/proje
 
 USER VARIABLES:
 
-out_path: /pasteur/zeus/projets/p01/BioIT/gmillot/08002_bourgeron/results/PL_family_WGS_slivar_1664358140
+out_path: /pasteur/zeus/projets/p01/BioIT/gmillot/08002_bourgeron/results/PL_family_WGS_slivar_1664813804
 sample_path: /pasteur/zeus/projets/p02/ghfc_wgs_zeus/WGS/Dyslexia/vcf/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz
diff --git a/example of results/PL_family_WGS_slivar_1664813804/reports/dag.dot b/example of results/PL_family_WGS_slivar_1664813804/reports/dag.dot
new file mode 100644
index 0000000000000000000000000000000000000000..390268924aca5381a3821cf205fe9e1d46f70c4f
--- /dev/null
+++ b/example of results/PL_family_WGS_slivar_1664813804/reports/dag.dot	
@@ -0,0 +1,70 @@
+digraph "dag" {
+p1 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p1 -> p9 [label="vcf"];
+
+p2 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p2 -> p9 [label="fun"];
+
+p3 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p3 -> p9 [label="annot1"];
+
+p4 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p4 -> p9 [label="annot2"];
+
+p5 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p5 -> p9 [label="ped"];
+
+p6 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p6 -> p9 [label="sample_expr"];
+
+p7 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p7 -> p9 [label="pedigree_expr"];
+
+p8 [shape=point,label="",fixedsize=true,width=0.1];
+p9 [label="slivar_extract"];
+p8 -> p9 [label="filter"];
+
+p9 [label="slivar_extract"];
+p14 [label="slivar_tsv"];
+p9 -> p14 [label="vcf_ch1"];
+
+p9 [label="slivar_extract"];
+p15 [label="slivar_vcf_compress"];
+p9 -> p15 [label="vcf_ch2"];
+
+p10 [shape=point,label="",fixedsize=true,width=0.1];
+p14 [label="slivar_tsv"];
+p10 -> p14 [label="ped"];
+
+p11 [shape=point,label="",fixedsize=true,width=0.1];
+p14 [label="slivar_tsv"];
+p11 -> p14 [label="tsv_file"];
+
+p12 [shape=point,label="",fixedsize=true,width=0.1];
+p14 [label="slivar_tsv"];
+p12 -> p14 [label="tsv_sample"];
+
+p13 [shape=point,label="",fixedsize=true,width=0.1];
+p14 [label="slivar_tsv"];
+p13 -> p14 [label="tsv_info"];
+
+p16 [shape=point,label="",fixedsize=true,width=0.1];
+p19 [label="Backup"];
+p16 -> p19 [label="config_file"];
+
+p17 [shape=point,label="",fixedsize=true,width=0.1];
+p19 [label="Backup"];
+p17 -> p19 [label="log_file"];
+
+p18 [shape=point,label="",fixedsize=true,width=0.1];
+p19 [label="Backup"];
+p18 -> p19 [label="fun"];
+
+}
diff --git a/example of results/PL_family_WGS_slivar_1664358140/reports/report.html b/example of results/PL_family_WGS_slivar_1664813804/reports/report.html
similarity index 99%
rename from example of results/PL_family_WGS_slivar_1664358140/reports/report.html
rename to example of results/PL_family_WGS_slivar_1664813804/reports/report.html
index 116a9cf705ba07dbab2c7234ebcca982e75cf440..fec64ea47c6b75bc92fb1f78d9bdfff87a9b75fb 100644
--- a/example of results/PL_family_WGS_slivar_1664358140/reports/report.html	
+++ b/example of results/PL_family_WGS_slivar_1664813804/reports/report.html	
@@ -18,11 +18,11 @@
 <head>
   <meta charset="utf-8">
   <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
-  <meta name="description" content="Nextflow workflow report for run id [goofy_kimura]">
+  <meta name="description" content="Nextflow workflow report for run id [festering_feynman]">
   <meta name="author" content="Paolo Di Tommaso, Phil Ewels">
   <link rel="icon" type="image/png" href="https://www.nextflow.io/img/favicon.png" />
 
-  <title>[goofy_kimura] Nextflow Workflow Report</title>
+  <title>[festering_feynman] Nextflow Workflow Report</title>
 
   <style type="text/css">
   /*!
@@ -137,7 +137,7 @@ table.DTCR_clonedTable.dataTable{position:absolute !important;background-color:r
         <li class="nav-item"><a class="nav-link" href="#tasks">Tasks</a></li>
       </ul>
       <span class="navbar-text">
-        [goofy_kimura]
+        [festering_feynman]
       </span>
     </div>
   </nav>
@@ -146,7 +146,7 @@ table.DTCR_clonedTable.dataTable{position:absolute !important;background-color:r
     <div class="container">
 
       <h1 class="display-3">Nextflow workflow report</h1>
-      <h2 class="text-muted mb-4"><samp>[goofy_kimura]</samp> </h2>
+      <h2 class="text-muted mb-4"><samp>[festering_feynman]</samp> <em>(resumed run)</em></h2>
 
       
           <div class="alert alert-success mb-4">
@@ -157,13 +157,13 @@ table.DTCR_clonedTable.dataTable{position:absolute !important;background-color:r
       <dl>
         <dt>Run times</dt>
         <dd>
-          <span id="workflow_start">28-Sep-2022 11:42:20</span> - <span id="workflow_complete">28-Sep-2022 12:00:01</span>
-          (<span id="completed_fromnow"></span>duration: <strong>17m 41s</strong>)
+          <span id="workflow_start">03-Oct-2022 18:16:44</span> - <span id="workflow_complete">03-Oct-2022 18:36:55</span>
+          (<span id="completed_fromnow"></span>duration: <strong>20m 11s</strong>)
         </dd>
 
         <dl>
           <div class="progress" style="height: 1.6rem; margin: 1.2rem auto; border-radius: 0.20rem;">
-            <div style="width: 100.0%" class="progress-bar bg-success" data-toggle="tooltip" data-placement="top" title="3 tasks succeeded"><span class="text-truncate">&nbsp; 3 succeeded &nbsp;</span></div>
+            <div style="width: 100.0%" class="progress-bar bg-success" data-toggle="tooltip" data-placement="top" title="5 tasks succeeded"><span class="text-truncate">&nbsp; 5 succeeded &nbsp;</span></div>
             <div style="width: 0.0%" class="progress-bar bg-secondary" data-toggle="tooltip" data-placement="top" title="0 tasks were cached"><span class="text-truncate">&nbsp; 0 cached &nbsp;</span></div>
             <div style="width: 0.0%" class="progress-bar bg-warning" data-toggle="tooltip" data-placement="top" title="0 tasks reported and error and were ignored"><span class="text-truncate">&nbsp; 0 ignored &nbsp;</span></div>
             <div style="width: 0.0%" class="progress-bar bg-danger" data-toggle="tooltip" data-placement="top" title="0 tasks failed"><span class="text-truncate">&nbsp; 0 failed &nbsp;</span></div>
@@ -171,7 +171,7 @@ table.DTCR_clonedTable.dataTable{position:absolute !important;background-color:r
         </dl>
 
         <dt>Nextflow command</dt>
-        <dd><pre class="nfcommand"><code>nextflow run --modules /opt/gensoft/exe/java/13.0.2/bin/java,/opt/gensoft/exe/singularity/3.8.3/bin/singularity,/opt/gensoft/exe/git/2.25.0/bin/git slivar_vcf_extraction_v1.6.nf -c slivar_vcf_extraction.config</code></pre></dd>
+        <dd><pre class="nfcommand"><code>nextflow run --modules /opt/gensoft/exe/java/13.0.2/bin/java,/opt/gensoft/exe/singularity/3.8.3/bin/singularity,/opt/gensoft/exe/git/2.25.0/bin/git slivar_vcf_extraction_v2.0.nf -c slivar_vcf_extraction.config -resume</code></pre></dd>
       </dl>
 
       <dl class="row small">
@@ -189,16 +189,16 @@ table.DTCR_clonedTable.dataTable{position:absolute !important;background-color:r
 
         
           <dt class="col-sm-3">Script name</dt>
-          <dd class="col-sm-9"><samp>slivar_vcf_extraction_v1.6.nf</samp></dd>
+          <dd class="col-sm-9"><samp>slivar_vcf_extraction_v2.0.nf</samp></dd>
         
 
         
           <dt class="col-sm-3">Script ID</dt>
-          <dd class="col-sm-9"><code>b387dfea1094fd5899f166cfbb37f1e0</code></dd>
+          <dd class="col-sm-9"><code>b87d6c38210d9b4a1d499d15b1c6cbd4</code></dd>
         
 
         <dt class="col-sm-3">Workflow session</dt>
-        <dd class="col-sm-9"><code>5cfc7283-1e20-441a-854c-0680c72eb8ad</code></dd>
+        <dd class="col-sm-9"><code>898fb66a-5d40-4ab5-af9e-0d737a5a9c93</code></dd>
 
         
 
@@ -1029,7 +1029,7 @@ $(function() {
 
   // Nextflow report data
   window.data = { "trace":[
-{"task_id":"3","hash":"00\/e6eb69","native_id":"29539507","process":"Backup","module":"-","container":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/singularity\/gmillot-bash-extended_v4.0-gitlab_v8.0.img","tag":"-","name":"Backup","status":"COMPLETED","exit":"0","submit":"1664358141685","start":"1664358146339","complete":"1664358151345","duration":"9660","realtime":"14","%cpu":"5.4","%mem":"0.0","rss":"0","vmem":"0","peak_rss":"0","peak_vmem":"0","rchar":"125212","wchar":"1529","syscr":"189","syscw":"32","read_bytes":"246784","write_bytes":"4096","attempt":"1","workdir":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/work\/00\/e6eb69f1c1595da38f89788ebfb60e","script":"\n    echo -e \"full .nextflow.log is in: \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\nThe one in the result folder is not complete (miss the end)\" > Log_info.txt\n    ","scratch":"-","queue":"hubbioit","cpus":"1","memory":"3221225472","disk":"-","time":"-","env":"sample_path=\/pasteur\/zeus\/projets\/p02\/ghfc_wgs_zeus\/WGS\/Dyslexia\/vcf\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz\nfun_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin\/slivar-functions.js\nped_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr= \npedigree_expr=--family-expr \'aff_only:fam.every(find_het_aff_hom_ref_unaff)\'\nfilter=true\ntsv_sample=aff_only\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i aff_only\nsystem_exec=slurm\nout_path_ini=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\nout_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\/PL_family_WGS_slivar_1664358140\nqueue=hubbioit\nqos=--qos=hubbioit\nadd_options= \nPATH=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin:$PATH\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"0"},{"task_id":"1","hash":"60\/eb369a","native_id":"29539508","process":"WorkflowVersion","module":"-","container":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/singularity\/gmillot-bash-extended_v4.0-gitlab_v8.0.img","tag":"-","name":"WorkflowVersion","status":"COMPLETED","exit":"0","submit":"1664358141744","start":"1664358146432","complete":"1664358151396","duration":"9652","realtime":"519","%cpu":"4.6","%mem":"0.0","rss":"5459968","vmem":"40321024","peak_rss":"5459968","peak_vmem":"40321024","rchar":"154756","wchar":"3365","syscr":"234","syscw":"59","read_bytes":"1081344","write_bytes":"40960","attempt":"1","workdir":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/work\/60\/eb369a2658a923951639e25a8f52b4","script":"\n    echo \"Project (empty means no .git folder where the main.nf file is present): \" $(git -C \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron remote -v | head -n 1) > Run_info.txt # works only if the main script run is located in a directory that has a .git folder, i.e., that is connected to a distant repo\n    echo \"Git info (empty means no .git folder where the main.nf file is present): \" $(git -C \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron describe --abbrev=10 --dirty --always --tags) >> Run_info.txt # idem. Provide the small commit number of the script and nextflow.config used in the execution\n    echo \"Cmd line: nextflow run --modules \/opt\/gensoft\/exe\/java\/13.0.2\/bin\/java,\/opt\/gensoft\/exe\/singularity\/3.8.3\/bin\/singularity,\/opt\/gensoft\/exe\/git\/2.25.0\/bin\/git slivar_vcf_extraction_v1.6.nf -c slivar_vcf_extraction.config\" >> Run_info.txt\n    echo \"execution mode\": slurm >> Run_info.txt\n    modules=\/opt\/gensoft\/exe\/java\/13.0.2\/bin\/java,\/opt\/gensoft\/exe\/singularity\/3.8.3\/bin\/singularity,\/opt\/gensoft\/exe\/git\/2.25.0\/bin\/git # this is just to deal with variable interpretation during the creation of the .command.sh file by nextflow. See also $modules below\n    if [[ ! -z $modules ]] ; then\n        echo \"loaded modules (according to specification by the user thanks to the --modules argument of main.nf)\": \/opt\/gensoft\/exe\/java\/13.0.2\/bin\/java,\/opt\/gensoft\/exe\/singularity\/3.8.3\/bin\/singularity,\/opt\/gensoft\/exe\/git\/2.25.0\/bin\/git >> Run_info.txt\n    fi\n    echo \"Manifest\'s pipeline version: null\" >> Run_info.txt\n    echo \"result path: \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\/PL_family_WGS_slivar_1664358140\" >> Run_info.txt\n    echo \"nextflow version: 21.04.1\" >> Run_info.txt\n    echo -e \"\\n\\nIMPLICIT VARIABLES:\\n\\nlaunchDir (directory where the workflow is run): \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\\nprojectDir (directory where the main.nf script is located): \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\\nworkDir (directory where tasks temporary files are created): \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/work\" >> Run_info.txt\n    echo -e \"\\n\\nUSER VARIABLES:\\n\\nout_path: \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\/PL_family_WGS_slivar_1664358140\\nsample_path: \/pasteur\/zeus\/projets\/p02\/ghfc_wgs_zeus\/WGS\/Dyslexia\/vcf\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz\" >> Run_info.txt\n    ","scratch":"-","queue":"hubbioit","cpus":"1","memory":"3221225472","disk":"-","time":"-","env":"sample_path=\/pasteur\/zeus\/projets\/p02\/ghfc_wgs_zeus\/WGS\/Dyslexia\/vcf\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz\nfun_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin\/slivar-functions.js\nped_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr= \npedigree_expr=--family-expr \'aff_only:fam.every(find_het_aff_hom_ref_unaff)\'\nfilter=true\ntsv_sample=aff_only\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i aff_only\nsystem_exec=slurm\nout_path_ini=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\nout_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\/PL_family_WGS_slivar_1664358140\nqueue=hubbioit\nqos=--qos=hubbioit\nadd_options= \nPATH=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin:$PATH\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"2"},{"task_id":"2","hash":"36\/8a923b","native_id":"29539509","process":"slivar","module":"-","container":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/singularity\/gmillot-slivar_v1.0-gitlab_v8.11.img","tag":"-","name":"slivar","status":"COMPLETED","exit":"0","submit":"1664358141799","start":"1664358151410","complete":"1664359201394","duration":"1059595","realtime":"1050761","%cpu":"95.3","%mem":"0.4","rss":"2402795520","vmem":"2421927936","peak_rss":"2402795520","peak_vmem":"2421940224","rchar":"6975109311","wchar":"868474","syscr":"633172","syscw":"578","read_bytes":"6379201536","write_bytes":"892928","attempt":"1","workdir":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/work\/36\/8a923b77dcdac854fce42f41d71da7","script":"\n    #!\/bin\/bash -ue\n\n    # add the modification of the pedigree if \n    slivar expr --js slivar-functions.js -g cadd-1.6-SNVs-phred10-GRCh37.zip -g gnomad-2.1.1-genome-GRCh37.zip --vcf Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz --ped Dyslexia.pedigree.txt   --family-expr \'aff_only:fam.every(find_het_aff_hom_ref_unaff)\' --pass-only -o \"res.vcf\"\n    slivar tsv --ped Dyslexia.pedigree.txt -s aff_only -i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i aff_only res.vcf > res.tsv\n    ","scratch":"-","queue":"hubbioit","cpus":"1","memory":"64424509440","disk":"-","time":"-","env":"sample_path=\/pasteur\/zeus\/projets\/p02\/ghfc_wgs_zeus\/WGS\/Dyslexia\/vcf\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz\nfun_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin\/slivar-functions.js\nped_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr= \npedigree_expr=--family-expr \'aff_only:fam.every(find_het_aff_hom_ref_unaff)\'\nfilter=true\ntsv_sample=aff_only\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i aff_only\nsystem_exec=slurm\nout_path_ini=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\nout_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\/PL_family_WGS_slivar_1664358140\nqueue=hubbioit\nqos=--qos=hubbioit\nadd_options= \nPATH=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin:$PATH\n","error_action":"-","vol_ctxt":"2560","inv_ctxt":"315069"}], 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};
+{"task_id":"3","hash":"38\/934009","native_id":"30751438","process":"Backup","module":"-","container":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/singularity\/gmillot-bash-extended_v4.0-gitlab_v8.0.img","tag":"-","name":"Backup","status":"COMPLETED","exit":"0","submit":"1664813805968","start":"1664813810695","complete":"1664813810712","duration":"4744","realtime":"54","%cpu":"7.2","%mem":"0.0","rss":"0","vmem":"0","peak_rss":"0","peak_vmem":"0","rchar":"125029","wchar":"1528","syscr":"189","syscw":"32","read_bytes":"246784","write_bytes":"4096","attempt":"1","workdir":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/work\/38\/934009545f70cc1f02a3a3c2bde210","script":"\n    echo -e \"full .nextflow.log is in: \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\nThe one in the result folder is not complete (miss the end)\" > Log_info.txt\n    ","scratch":"-","queue":"hubbioit","cpus":"1","memory":"3221225472","disk":"-","time":"-","env":"sample_path=\/pasteur\/zeus\/projets\/p02\/ghfc_wgs_zeus\/WGS\/Dyslexia\/vcf\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz\nfun_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin\/slivar-functions.js\nped_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr= \npedigree_expr=--family-expr \'aff_only:fam.every(find_het_aff_hom_ref_unaff)\'\nfilter=true\ntsv_file=true\ntsv_sample=aff_only\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i aff_only\nsystem_exec=slurm\nout_path_ini=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\nout_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\/PL_family_WGS_slivar_1664813804\nqueue=hubbioit\nqos=--qos=hubbioit\nadd_options= \nPATH=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin:$PATH\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"0"},{"task_id":"1","hash":"fc\/31bb4d","native_id":"30751439","process":"WorkflowVersion","module":"-","container":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/singularity\/gmillot-bash-extended_v4.0-gitlab_v8.0.img","tag":"-","name":"WorkflowVersion","status":"COMPLETED","exit":"0","submit":"1664813806018","start":"1664813810762","complete":"1664813810780","duration":"4762","realtime":"141","%cpu":"20.9","%mem":"0.0","rss":"0","vmem":"0","peak_rss":"0","peak_vmem":"0","rchar":"154598","wchar":"3373","syscr":"234","syscw":"59","read_bytes":"1081344","write_bytes":"40960","attempt":"1","workdir":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/work\/fc\/31bb4d59280a16c4457782eaee46ad","script":"\n    echo \"Project (empty means no .git folder where the main.nf file is present): \" $(git -C \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron remote -v | head -n 1) > Run_info.txt # works only if the main script run is located in a directory that has a .git folder, i.e., that is connected to a distant repo\n    echo \"Git info (empty means no .git folder where the main.nf file is present): \" $(git -C \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron describe --abbrev=10 --dirty --always --tags) >> Run_info.txt # idem. Provide the small commit number of the script and nextflow.config used in the execution\n    echo \"Cmd line: nextflow run --modules \/opt\/gensoft\/exe\/java\/13.0.2\/bin\/java,\/opt\/gensoft\/exe\/singularity\/3.8.3\/bin\/singularity,\/opt\/gensoft\/exe\/git\/2.25.0\/bin\/git slivar_vcf_extraction_v2.0.nf -c slivar_vcf_extraction.config -resume\" >> Run_info.txt\n    echo \"execution mode\": slurm >> Run_info.txt\n    modules=\/opt\/gensoft\/exe\/java\/13.0.2\/bin\/java,\/opt\/gensoft\/exe\/singularity\/3.8.3\/bin\/singularity,\/opt\/gensoft\/exe\/git\/2.25.0\/bin\/git # this is just to deal with variable interpretation during the creation of the .command.sh file by nextflow. See also $modules below\n    if [[ ! -z $modules ]] ; then\n        echo \"loaded modules (according to specification by the user thanks to the --modules argument of main.nf)\": \/opt\/gensoft\/exe\/java\/13.0.2\/bin\/java,\/opt\/gensoft\/exe\/singularity\/3.8.3\/bin\/singularity,\/opt\/gensoft\/exe\/git\/2.25.0\/bin\/git >> Run_info.txt\n    fi\n    echo \"Manifest\'s pipeline version: null\" >> Run_info.txt\n    echo \"result path: \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\/PL_family_WGS_slivar_1664813804\" >> Run_info.txt\n    echo \"nextflow version: 21.04.1\" >> Run_info.txt\n    echo -e \"\\n\\nIMPLICIT VARIABLES:\\n\\nlaunchDir (directory where the workflow is run): \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\\nprojectDir (directory where the main.nf script is located): \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\\nworkDir (directory where tasks temporary files are created): \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/work\" >> Run_info.txt\n    echo -e \"\\n\\nUSER VARIABLES:\\n\\nout_path: \/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\/PL_family_WGS_slivar_1664813804\\nsample_path: \/pasteur\/zeus\/projets\/p02\/ghfc_wgs_zeus\/WGS\/Dyslexia\/vcf\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz\" >> Run_info.txt\n    ","scratch":"-","queue":"hubbioit","cpus":"1","memory":"3221225472","disk":"-","time":"-","env":"sample_path=\/pasteur\/zeus\/projets\/p02\/ghfc_wgs_zeus\/WGS\/Dyslexia\/vcf\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz\nfun_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin\/slivar-functions.js\nped_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr= \npedigree_expr=--family-expr \'aff_only:fam.every(find_het_aff_hom_ref_unaff)\'\nfilter=true\ntsv_file=true\ntsv_sample=aff_only\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i aff_only\nsystem_exec=slurm\nout_path_ini=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\nout_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\/PL_family_WGS_slivar_1664813804\nqueue=hubbioit\nqos=--qos=hubbioit\nadd_options= \nPATH=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin:$PATH\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"0"},{"task_id":"2","hash":"aa\/876012","native_id":"30751640","process":"slivar_extract","module":"-","container":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/singularity\/gmillot-slivar_v2.0-gitlab_v9.1.img","tag":"-","name":"slivar_extract","status":"COMPLETED","exit":"0","submit":"1664813990423","start":"1664813995703","complete":"1664815010753","duration":"1020330","realtime":"1016118","%cpu":"97.8","%mem":"0.4","rss":"2398576640","vmem":"2424942592","peak_rss":"2398576640","peak_vmem":"2424958976","rchar":"6974975542","wchar":"214833","syscr":"633229","syscw":"106","read_bytes":"2161664","write_bytes":"237568","attempt":"1","workdir":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/work\/aa\/876012a3be8c8c258a7cea70862e19","script":"\n    #!\/bin\/bash -ue\n    slivar expr --js slivar-functions.js -g cadd-1.6-SNVs-phred10-GRCh37.zip -g gnomad-2.1.1-genome-GRCh37.zip --vcf Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz --ped Dyslexia.pedigree.txt   --family-expr \'aff_only:fam.every(find_het_aff_hom_ref_unaff)\' --pass-only -o \"res.vcf\"\n    ","scratch":"-","queue":"hubbioit","cpus":"1","memory":"64424509440","disk":"-","time":"-","env":"sample_path=\/pasteur\/zeus\/projets\/p02\/ghfc_wgs_zeus\/WGS\/Dyslexia\/vcf\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz\nfun_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin\/slivar-functions.js\nped_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr= \npedigree_expr=--family-expr \'aff_only:fam.every(find_het_aff_hom_ref_unaff)\'\nfilter=true\ntsv_file=true\ntsv_sample=aff_only\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i aff_only\nsystem_exec=slurm\nout_path_ini=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\nout_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\/PL_family_WGS_slivar_1664813804\nqueue=hubbioit\nqos=--qos=hubbioit\nadd_options= \nPATH=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin:$PATH\n","error_action":"-","vol_ctxt":"190","inv_ctxt":"313710"},{"task_id":"5","hash":"73\/a5ca3a","native_id":"30753324","process":"slivar_vcf_compress","module":"-","container":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/singularity\/gmillot-slivar_v2.0-gitlab_v9.1.img","tag":"-","name":"slivar_vcf_compress","status":"COMPLETED","exit":"0","submit":"1664815010820","start":"1664815015752","complete":"1664815015770","duration":"4950","realtime":"138","%cpu":"25.8","%mem":"0.0","rss":"0","vmem":"0","peak_rss":"0","peak_vmem":"0","rchar":"436774","wchar":"48068","syscr":"296","syscw":"32","read_bytes":"1001472","write_bytes":"49152","attempt":"1","workdir":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/work\/73\/a5ca3af86ed4f8f19d74b3af111d55","script":"\n    #!\/bin\/bash -ue\n    bgzip -cf -l 9 res.vcf > res.vcf.gz # htslib command, -l 9 best compression, -c to standard output, -f to force without asking\n    tabix -p vcf res.vcf.gz # htslib command\n    ","scratch":"-","queue":"hubbioit","cpus":"1","memory":"64424509440","disk":"-","time":"-","env":"sample_path=\/pasteur\/zeus\/projets\/p02\/ghfc_wgs_zeus\/WGS\/Dyslexia\/vcf\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz\nfun_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin\/slivar-functions.js\nped_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr= \npedigree_expr=--family-expr \'aff_only:fam.every(find_het_aff_hom_ref_unaff)\'\nfilter=true\ntsv_file=true\ntsv_sample=aff_only\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i aff_only\nsystem_exec=slurm\nout_path_ini=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\nout_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\/PL_family_WGS_slivar_1664813804\nqueue=hubbioit\nqos=--qos=hubbioit\nadd_options= \nPATH=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin:$PATH\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"0"},{"task_id":"4","hash":"ff\/b07fff","native_id":"30753325","process":"slivar_tsv","module":"-","container":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/singularity\/gmillot-slivar_v2.0-gitlab_v9.1.img","tag":"-","name":"slivar_tsv","status":"COMPLETED","exit":"0","submit":"1664815010858","start":"1664815015798","complete":"1664815015813","duration":"4955","realtime":"3246","%cpu":"3.6","%mem":"0.0","rss":"5779456","vmem":"13815808","peak_rss":"5779456","peak_vmem":"13832192","rchar":"1034529","wchar":"686482","syscr":"293","syscw":"501","read_bytes":"2156544","write_bytes":"688128","attempt":"1","workdir":"\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/work\/ff\/b07ffffbb1620e9db94878651eb3d7","script":"\n    #!\/bin\/bash -ue\n    if [[ true == true ]] ; then \n        slivar tsv --ped Dyslexia.pedigree.txt -s aff_only -i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i aff_only res.vcf > res.tsv\n        gzip -f res.tsv \n    fi\n    ","scratch":"-","queue":"hubbioit","cpus":"1","memory":"64424509440","disk":"-","time":"-","env":"sample_path=\/pasteur\/zeus\/projets\/p02\/ghfc_wgs_zeus\/WGS\/Dyslexia\/vcf\/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz\nfun_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin\/slivar-functions.js\nped_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/Dyslexia.pedigree.txt\nannot1_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/cadd-1.6-SNVs-phred10-GRCh37.zip\nannot2_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/dataset\/gnomad-2.1.1-genome-GRCh37.zip\nsample_expr= \npedigree_expr=--family-expr \'aff_only:fam.every(find_het_aff_hom_ref_unaff)\'\nfilter=true\ntsv_file=true\ntsv_sample=aff_only\ntsv_info=-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i aff_only\nsystem_exec=slurm\nout_path_ini=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\nout_path=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/results\/PL_family_WGS_slivar_1664813804\nqueue=hubbioit\nqos=--qos=hubbioit\nadd_options= \nPATH=\/pasteur\/zeus\/projets\/p01\/BioIT\/gmillot\/08002_bourgeron\/bin:$PATH\n","error_action":"-","vol_ctxt":"64","inv_ctxt":"8"}], "summary":[{"cpuUsage":{"mean":7.2,"min":7.2,"q1":7.2,"q2":7.2,"q3":7.2,"max":7.2,"minLabel":"Backup","maxLabel":"Backup","q1Label":"Backup","q2Label":"Backup","q3Label":"Backup"},"process":"Backup","mem":null,"memUsage":null,"timeUsage":null,"vmem":null,"reads":{"mean":125029,"min":125029,"q1":125029,"q2":125029,"q3":125029,"max":125029,"minLabel":"Backup","maxLabel":"Backup","q1Label":"Backup","q2Label":"Backup","q3Label":"Backup"},"cpu":{"mean":7.2,"min":7.2,"q1":7.2,"q2":7.2,"q3":7.2,"max":7.2,"minLabel":"Backup","maxLabel":"Backup","q1Label":"Backup","q2Label":"Backup","q3Label":"Backup"},"time":{"mean":54,"min":54,"q1":54,"q2":54,"q3":54,"max":54,"minLabel":"Backup","maxLabel":"Backup","q1Label":"Backup","q2Label":"Backup","q3Label":"Backup"},"writes":{"mean":1528,"min":1528,"q1":1528,"q2":1528,"q3":1528,"max":1528,"minLabel":"Backup","maxLabel":"Backup","q1Label":"Backup","q2Label":"Backup","q3Label":"Backup"}},{"cpuUsage":{"mean":20.9,"min":20.9,"q1":20.9,"q2":20.9,"q3":20.9,"max":20.9,"minLabel":"WorkflowVersion","maxLabel":"WorkflowVersion","q1Label":"WorkflowVersion","q2Label":"WorkflowVersion","q3Label":"WorkflowVersion"},"process":"WorkflowVersion","mem":null,"memUsage":null,"timeUsage":null,"vmem":null,"reads":{"mean":154598,"min":154598,"q1":154598,"q2":154598,"q3":154598,"max":154598,"minLabel":"WorkflowVersion","maxLabel":"WorkflowVersion","q1Label":"WorkflowVersion","q2Label":"WorkflowVersion","q3Label":"WorkflowVersion"},"cpu":{"mean":20.9,"min":20.9,"q1":20.9,"q2":20.9,"q3":20.9,"max":20.9,"minLabel":"WorkflowVersion","maxLabel":"WorkflowVersion","q1Label":"WorkflowVersion","q2Label":"WorkflowVersion","q3Label":"WorkflowVersion"},"time":{"mean":141,"min":141,"q1":141,"q2":141,"q3":141,"max":141,"minLabel":"WorkflowVersion","maxLabel":"WorkflowVersion","q1Label":"WorkflowVersion","q2Label":"WorkflowVersion","q3Label":"WorkflowVersion"},"writes":{"mean":3373,"min":3373,"q1":3373,"q2":3373,"q3":3373,"max":3373,"minLabel":"WorkflowVersion","maxLabel":"WorkflowVersion","q1Label":"WorkflowVersion","q2Label":"WorkflowVersion","q3Label":"WorkflowVersion"}},{"cpuUsage":{"mean":97.8,"min":97.8,"q1":97.8,"q2":97.8,"q3":97.8,"max":97.8,"minLabel":"slivar_extract","maxLabel":"slivar_extract","q1Label":"slivar_extract","q2Label":"slivar_extract","q3Label":"slivar_extract"},"process":"slivar_extract","mem":{"mean":2398576640,"min":2398576640,"q1":2398576640,"q2":2398576640,"q3":2398576640,"max":2398576640,"minLabel":"slivar_extract","maxLabel":"slivar_extract","q1Label":"slivar_extract","q2Label":"slivar_extract","q3Label":"slivar_extract"},"memUsage":{"mean":3.72,"min":3.72,"q1":3.72,"q2":3.72,"q3":3.72,"max":3.72,"minLabel":"slivar_extract","maxLabel":"slivar_extract","q1Label":"slivar_extract","q2Label":"slivar_extract","q3Label":"slivar_extract"},"timeUsage":null,"vmem":{"mean":2424958976,"min":2424958976,"q1":2424958976,"q2":2424958976,"q3":2424958976,"max":2424958976,"minLabel":"slivar_extract","maxLabel":"slivar_extract","q1Label":"slivar_extract","q2Label":"slivar_extract","q3Label":"slivar_extract"},"reads":{"mean":6974975542,"min":6974975542,"q1":6974975542,"q2":6974975542,"q3":6974975542,"max":6974975542,"minLabel":"slivar_extract","maxLabel":"slivar_extract","q1Label":"slivar_extract","q2Label":"slivar_extract","q3Label":"slivar_extract"},"cpu":{"mean":97.8,"min":97.8,"q1":97.8,"q2":97.8,"q3":97.8,"max":97.8,"minLabel":"slivar_extract","maxLabel":"slivar_extract","q1Label":"slivar_extract","q2Label":"slivar_extract","q3Label":"slivar_extract"},"time":{"mean":1016118,"min":1016118,"q1":1016118,"q2":1016118,"q3":1016118,"max":1016118,"minLabel":"slivar_extract","maxLabel":"slivar_extract","q1Label":"slivar_extract","q2Label":"slivar_extract","q3Label":"slivar_extract"},"writes":{"mean":214833,"min":214833,"q1":214833,"q2":214833,"q3":214833,"max":214833,"minLabel":"slivar_extract","maxLabel":"slivar_extract","q1Label":"slivar_extract","q2Label":"slivar_extract","q3Label":"slivar_extract"}},{"cpuUsage":{"mean":25.8,"min":25.8,"q1":25.8,"q2":25.8,"q3":25.8,"max":25.8,"minLabel":"slivar_vcf_compress","maxLabel":"slivar_vcf_compress","q1Label":"slivar_vcf_compress","q2Label":"slivar_vcf_compress","q3Label":"slivar_vcf_compress"},"process":"slivar_vcf_compress","mem":null,"memUsage":null,"timeUsage":null,"vmem":null,"reads":{"mean":436774,"min":436774,"q1":436774,"q2":436774,"q3":436774,"max":436774,"minLabel":"slivar_vcf_compress","maxLabel":"slivar_vcf_compress","q1Label":"slivar_vcf_compress","q2Label":"slivar_vcf_compress","q3Label":"slivar_vcf_compress"},"cpu":{"mean":25.8,"min":25.8,"q1":25.8,"q2":25.8,"q3":25.8,"max":25.8,"minLabel":"slivar_vcf_compress","maxLabel":"slivar_vcf_compress","q1Label":"slivar_vcf_compress","q2Label":"slivar_vcf_compress","q3Label":"slivar_vcf_compress"},"time":{"mean":138,"min":138,"q1":138,"q2":138,"q3":138,"max":138,"minLabel":"slivar_vcf_compress","maxLabel":"slivar_vcf_compress","q1Label":"slivar_vcf_compress","q2Label":"slivar_vcf_compress","q3Label":"slivar_vcf_compress"},"writes":{"mean":48068,"min":48068,"q1":48068,"q2":48068,"q3":48068,"max":48068,"minLabel":"slivar_vcf_compress","maxLabel":"slivar_vcf_compress","q1Label":"slivar_vcf_compress","q2Label":"slivar_vcf_compress","q3Label":"slivar_vcf_compress"}},{"cpuUsage":{"mean":3.6,"min":3.6,"q1":3.6,"q2":3.6,"q3":3.6,"max":3.6,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"},"process":"slivar_tsv","mem":{"mean":5779456,"min":5779456,"q1":5779456,"q2":5779456,"q3":5779456,"max":5779456,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"},"memUsage":{"mean":0.01,"min":0.01,"q1":0.01,"q2":0.01,"q3":0.01,"max":0.01,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"},"timeUsage":null,"vmem":{"mean":13832192,"min":13832192,"q1":13832192,"q2":13832192,"q3":13832192,"max":13832192,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"},"reads":{"mean":1034529,"min":1034529,"q1":1034529,"q2":1034529,"q3":1034529,"max":1034529,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"},"cpu":{"mean":3.6,"min":3.6,"q1":3.6,"q2":3.6,"q3":3.6,"max":3.6,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"},"time":{"mean":3246,"min":3246,"q1":3246,"q2":3246,"q3":3246,"max":3246,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"},"writes":{"mean":686482,"min":686482,"q1":686482,"q2":686482,"q3":686482,"max":686482,"minLabel":"slivar_tsv","maxLabel":"slivar_tsv","q1Label":"slivar_tsv","q2Label":"slivar_tsv","q3Label":"slivar_tsv"}}] };
 
   </script>
 
diff --git a/example of results/PL_family_WGS_slivar_1664358140/reports/slivar-functions.js b/example of results/PL_family_WGS_slivar_1664813804/reports/slivar-functions.js
similarity index 100%
rename from example of results/PL_family_WGS_slivar_1664358140/reports/slivar-functions.js
rename to example of results/PL_family_WGS_slivar_1664813804/reports/slivar-functions.js
diff --git a/example of results/PL_family_WGS_slivar_1664358140/reports/slivar_vcf_extraction.config b/example of results/PL_family_WGS_slivar_1664813804/reports/slivar_vcf_extraction.config
similarity index 97%
rename from example of results/PL_family_WGS_slivar_1664358140/reports/slivar_vcf_extraction.config
rename to example of results/PL_family_WGS_slivar_1664813804/reports/slivar_vcf_extraction.config
index 26bc322e302ebeec3e949cea847bea6d2ee9baa5..f371e91dc3b1141b9f5c454be04c5c227ae17231 100644
--- a/example of results/PL_family_WGS_slivar_1664358140/reports/slivar_vcf_extraction.config	
+++ b/example of results/PL_family_WGS_slivar_1664813804/reports/slivar_vcf_extraction.config	
@@ -30,6 +30,7 @@ env {
     sample_expr = " " // expression to use for the --sample-expr option of slivar. Example: sample_expr = "--sample-expr 'high_quality:sample.GQ >= 10'". Before the colon is the name of the new field added in the INFO field of the VCF. Write " " if no selection wanted (only annotation). "--sample-expr 'all:sample.DP >= 0'" Must be used if no filter wanted but tsv wanted. Another example: "--sample-expr 'all:sample.GQ == \".\"'"
     pedigree_expr = "--family-expr 'aff_only:fam.every(find_het_aff_hom_ref_unaff)'" // expression to use for the --family-expr or --trio or --group-expr option of slivar in order to filter the data according to pedigree info or VCF info (depends on the .js file defined by fun_path above). See https://github.com/brentp/slivar#commands for details. Example: "--family-expr 'aff_only:fam.every(find_het_aff_hom_ref_unaff)'". Write " " if no selection wanted (only annotation). Of note, for no filtering, pedigree_expr="all:fam.every(function(s){return s.affected || s.unaffected})" does not work, we have to use --sample-expr
     filter = "true" // if false, the output VCF is only labeled in the VCF INFO field according to the pedigree_expr parameter. If true, take only the labeled lines (variants) of the output VCF. Of note, true add the --pass-only argument to the slivar expr
+    tsv_file = "true" // if true, return a .tsv file of the .vcf file output
     tsv_sample = "aff_only" // mandatory -s option of the slivar tsv command. Example sample="aff_only". What is indicated must be a field of the INFO field of the vcf, added using the sample_expr or pedigree_expr parameter
     tsv_info = "-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i aff_only" // -i option of the slivar tsv command that extracts data from the INFO field of the vcf file (https://github.com/brentp/slivar#tsv) for the tsv file output. Example : "-i AC -i AF -i AN". Warning: if one of the -i is not in the vcf file, it will generate an error. Thus, be carefull with what is used in the sample_expr or pedigree_expr parameter
 }
@@ -138,7 +139,7 @@ singularity {
     }else if(system_exec == 'slurm_local'){
         cacheDir = 'singularity' // "$baseDir/singularity" can be used but do not forget double quotes.
     }else{
-        cacheDir = '/mnt/c/Users/Gael/Documents/singularity' // "$baseDir/singularity" can be used but do not forget double quotes.
+        cacheDir = '/mnt/c/Users/gmillot/singularity' // "$baseDir/singularity" can be used but do not forget double quotes.
     }
 }
 
@@ -170,7 +171,7 @@ process {
     }
 
     withLabel: slivar {
-        container='gmillot/slivar_v1.0:gitlab_v8.11'
+        container='gmillot/slivar_v2.0:gitlab_v9.1'
         cpus=1
         memory='60G'
     }
diff --git a/example of results/PL_family_WGS_slivar_1664358140/reports/timeline.html b/example of results/PL_family_WGS_slivar_1664813804/reports/timeline.html
similarity index 99%
rename from example of results/PL_family_WGS_slivar_1664358140/reports/timeline.html
rename to example of results/PL_family_WGS_slivar_1664813804/reports/timeline.html
index ec3530b0a6d25d98f8ed0bfc4d9a8d3396a6d972..844b7970c155c9eb3718b68ac1bacb18de8940e6 100644
--- a/example of results/PL_family_WGS_slivar_1664358140/reports/timeline.html	
+++ b/example of results/PL_family_WGS_slivar_1664813804/reports/timeline.html	
@@ -205,13 +205,15 @@ $(function() {
 
   // Nextflow report data
   window.data = {
-    "elapsed": "17m 41s",
-    "beginningMillis": 1664358140804,
-    "endingMillis": 1664359202028,
+    "elapsed": "20m 11s",
+    "beginningMillis": 1664813805109,
+    "endingMillis": 1664815016399,
     "processes": [
-        {"label": "Backup", "cached": false, "index": 0, "times": [{"starting_time": 1664358141685, "ending_time": 1664358146339}, {"starting_time": 1664358146339, "ending_time": 1664358146353, "label": "9.7s \/ 0"}, {"starting_time": 1664358146353, "ending_time": 1664358151345}]},
-        {"label": "WorkflowVersion", "cached": false, "index": 1, "times": [{"starting_time": 1664358141744, "ending_time": 1664358146432}, {"starting_time": 1664358146432, "ending_time": 1664358146951, "label": "9.7s \/ 5.2 MB"}, {"starting_time": 1664358146951, "ending_time": 1664358151396}]},
-        {"label": "slivar", "cached": false, "index": 2, "times": [{"starting_time": 1664358141799, "ending_time": 1664358151410}, {"starting_time": 1664358151410, "ending_time": 1664359202171, "label": "17m 40s \/ 2.2 GB"}]}
+        {"label": "Backup", "cached": false, "index": 0, "times": [{"starting_time": 1664813805968, "ending_time": 1664813810695}, {"starting_time": 1664813810695, "ending_time": 1664813810749, "label": "4.7s \/ 0"}]},
+        {"label": "WorkflowVersion", "cached": false, "index": 1, "times": [{"starting_time": 1664813806018, "ending_time": 1664813810762}, {"starting_time": 1664813810762, "ending_time": 1664813810903, "label": "4.8s \/ 0"}]},
+        {"label": "slivar_extract", "cached": false, "index": 2, "times": [{"starting_time": 1664813990423, "ending_time": 1664813995703}, {"starting_time": 1664813995703, "ending_time": 1664815011821, "label": "17m \/ 2.2 GB"}]},
+        {"label": "slivar_vcf_compress", "cached": false, "index": 3, "times": [{"starting_time": 1664815010820, "ending_time": 1664815015752}, {"starting_time": 1664815015752, "ending_time": 1664815015890, "label": "5s \/ 0"}]},
+        {"label": "slivar_tsv", "cached": false, "index": 4, "times": [{"starting_time": 1664815010858, "ending_time": 1664815015798}, {"starting_time": 1664815015798, "ending_time": 1664815019044, "label": "5s \/ 5.5 MB"}]}
     ]
 }
 ;
diff --git a/example of results/PL_family_WGS_slivar_1664813804/reports/trace.txt b/example of results/PL_family_WGS_slivar_1664813804/reports/trace.txt
new file mode 100644
index 0000000000000000000000000000000000000000..568c8d081de46381c6a1185d61bf6299859c4d34
--- /dev/null
+++ b/example of results/PL_family_WGS_slivar_1664813804/reports/trace.txt	
@@ -0,0 +1,6 @@
+task_id	hash	native_id	name	status	exit	submit	duration	realtime	%cpu	peak_rss	peak_vmem	rchar	wchar
+3	38/934009	30751438	Backup	COMPLETED	0	2022-10-03 18:16:45.968	4.7s	54ms	7.2%	0	0	122.1 KB	1.5 KB
+1	fc/31bb4d	30751439	WorkflowVersion	COMPLETED	0	2022-10-03 18:16:46.018	4.8s	141ms	20.9%	0	0	151 KB	3.3 KB
+2	aa/876012	30751640	slivar_extract	COMPLETED	0	2022-10-03 18:19:50.423	17m	16m 56s	97.8%	2.2 GB	2.3 GB	6.5 GB	209.8 KB
+5	73/a5ca3a	30753324	slivar_vcf_compress	COMPLETED	0	2022-10-03 18:36:50.820	5s	138ms	25.8%	0	0	426.5 KB	46.9 KB
+4	ff/b07fff	30753325	slivar_tsv	COMPLETED	0	2022-10-03 18:36:50.858	5s	3.2s	3.6%	5.5 MB	13.2 MB	1010.3 KB	670.4 KB
diff --git a/example of results/PL_family_WGS_slivar_1664813804/res.tsv.gz b/example of results/PL_family_WGS_slivar_1664813804/res.tsv.gz
new file mode 100644
index 0000000000000000000000000000000000000000..22ee2636117d6a8b5be622316ae9703d1790ce4e
Binary files /dev/null and b/example of results/PL_family_WGS_slivar_1664813804/res.tsv.gz differ
diff --git a/example of results/PL_family_WGS_slivar_1664813804/res.vcf.gz b/example of results/PL_family_WGS_slivar_1664813804/res.vcf.gz
new file mode 100644
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diff --git a/example of results/PL_family_WGS_slivar_1664813804/res.vcf.gz.tbi b/example of results/PL_family_WGS_slivar_1664813804/res.vcf.gz.tbi
new file mode 100644
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diff --git a/slivar_vcf_extraction.config b/slivar_vcf_extraction.config
index 57a26f3793b0deaad32da4e59c42819f1b1bd84f..18883002ad6c07990922ce31c580724fc6f06652 100644
--- a/slivar_vcf_extraction.config
+++ b/slivar_vcf_extraction.config
@@ -16,7 +16,7 @@
 
 // variables exported to the main.nf environment. See https://www.nextflow.io/docs/latest/config.html#scope-env
 env {
-    sample_path = "/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10000.vcf.gz" // path of the sample file. Example : sample_path="/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10000.vcf.gz" sample_path="/pasteur/zeus/projets/p02/ghfc_wgs_zeus/WGS/Dyslexia/vcf/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz". The .tbi file seems not required when calling a .gz file
+    sample_path = "/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10.vcf" // path of the sample file. Example : sample_path="/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/Dyslexia.gatk-vqsr.splitted.norm.vep.merged_first_10000.vcf.gz" sample_path="/pasteur/zeus/projets/p02/ghfc_wgs_zeus/WGS/Dyslexia/vcf/Dyslexia.gatk-vqsr.splitted.norm.vep.merged.vcf.gz". The .tbi file seems not required when calling a .gz file
     //Warning: do not write the out_path now. See below. If written here, the one below is not considered"
     fun_path = "/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/bin/slivar-functions.js" // .js file containing functions for the slivar --family-expr option. Example : fun_path="/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/bin/slivar-functions.js", fun_path="/pasteur/zeus/projets/p01/BioIT/gmillot/08002_bourgeron/bin/slivar-functions.js"
     ped_path = "/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/Dyslexia.pedigree.txt" // path of the pedigree file. Example : ped_path="/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/Dyslexia.pedigree.txt", ped_path="/pasteur/zeus/projets/p01/BioIT/gmillot/08002_bourgeron/dataset/Dyslexia.pedigree.txt" // pedigree
@@ -27,11 +27,12 @@ env {
 
     annot1_path = "/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/cadd-1.6-SNVs-phred10-GRCh37.zip" // path of the cadd annotation file. Example : annot1_path="/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/cadd-1.6-SNVs-phred10-GRCh37.zip", annot1_path="/pasteur/zeus/projets/p02/ghfc_wgs_zeus/references/GRCh37/slivar-gnotate/cadd-1.6-SNVs-phred10-GRCh37.zip" // cadd annotation
     annot2_path = "/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/gnomad-2.1.1-genome-GRCh37.zip" // path of gnomad annotation file. Example : annot2_path="/mnt/c/Users/Gael/Documents/Git_projects/slivar_vcf_extraction/dataset/gnomad-2.1.1-genome-GRCh37.zip", annot2_path="/pasteur/zeus/projets/p02/ghfc_wgs_zeus/references/GRCh37/slivar-gnotate/gnomad-2.1.1-genome-GRCh37.zip" // gnomad annotation
-    sample_expr = " " // expression to use for the --sample-expr option of slivar. Example: sample_expr = "--sample-expr 'high_quality:sample.GQ >= 10'". Before the colon is the name of the new field added in the INFO field of the VCF. Write " " if no selection wanted (only annotation). Write "--sample-expr 'all:true'" if no filter wanted but tsv wanted. Of note, "--sample-expr 'all:sample.GQ == \".\"'" is correctly written in the .command.sh file in the work dir of nextflow, but does not seem to work in selecting the empty GQ
-    pedigree_expr = "--family-expr 'aff_only:fam.every(find_het_aff_hom_ref_unaff)'" // expression to use for the --family-expr or --trio or --group-expr option of slivar in order to filter the data according to pedigree info or VCF info (depends on the .js file defined by fun_path above). See https://github.com/brentp/slivar#commands for details. Example: "--family-expr 'aff_only:fam.every(find_het_aff_hom_ref_unaff)'". Write " " if no selection wanted (only annotation). Of note, for no filtering, pedigree_expr="all:fam.every(function(s){return s.affected || s.unaffected})" does not work, we have to use --sample-expr
-    filter = "true" // if false, the output VCF is only labeled in the VCF INFO field according to the pedigree_expr parameter. If true, take only the labeled lines (variants) of the output VCF. Of note, true add the --pass-only argument to the slivar expr
-    tsv_sample = "aff_only" // mandatory -s option of the slivar tsv command. Example sample="aff_only". What is indicated must be a field of the INFO field of the vcf, added using the sample_expr or pedigree_expr parameter
-    tsv_info = "-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i aff_only" // -i option of the slivar tsv command that extracts data from the INFO field of the vcf file (https://github.com/brentp/slivar#tsv) for the tsv file output. Example : "-i AC -i AF -i AN". Warning: if one of the -i is not in the vcf file, it will generate an error. Thus, be carefull with what is used in the sample_expr or pedigree_expr parameter
+    sample_expr = "--sample-expr 'all:true'" // expression to use for the --sample-expr option of slivar. Example: sample_expr = "--sample-expr 'high_quality:sample.GQ >= 10'". Before the colon is the name of the new field added in the INFO field of the VCF. Write " " if no selection wanted (only annotation). Write "--sample-expr 'all:true'" if no filter wanted but tsv wanted. Warning: all:sample.DP >= 0 is not equivalent to all:true. Of note, "--sample-expr 'all:sample.GQ == \".\"'" is correctly written in the .command.sh file in the work dir of nextflow, but does not seem to work in selecting the empty GQ
+    pedigree_expr = " " // expression to use for the --family-expr or --trio or --group-expr option of slivar in order to filter the data according to pedigree info or VCF info (depends on the .js file defined by fun_path above). See https://github.com/brentp/slivar#commands for details. Example: "--family-expr 'aff_only:fam.every(find_het_aff_hom_ref_unaff)'". Write " " if no selection wanted (only annotation). Of note, for no filtering, pedigree_expr="all:fam.every(function(s){return s.affected || s.unaffected})" does not work, we have to use --sample-expr
+    filter = "false" // if false, the output VCF is only labeled in the VCF INFO field according to the pedigree_expr parameter. If true, take only the labeled lines (variants) of the output VCF. Of note, true add the --pass-only argument to the slivar expr
+    tsv_file = "true" // if true, return a .tsv file of the .vcf file output
+    tsv_sample = "all" // mandatory -s option of the slivar tsv command. Example sample="aff_only". What is indicated must be a field of the INFO field of the vcf, added using the sample_expr or pedigree_expr parameter. Ignored if tsv_file == "true"
+    tsv_info = "-i AC -i AF -i AN -i BaseQRankSum -i DB -i DP -i ExcessHet -i FS -i InbreedingCoeff -i MLEAC -i MLEAF -i MQ -i MQRankSum -i QD -i ReadPosRankSum -i SOR -i VQSLOD -i culprit -i CSQ -i cadd_phred -i gno_non_neuro_af_all -i gno_non_neuro_af_nfe -i gno_non_neuro_nhomalt_all -i gno_non_neuro_nhomalt_nfe -i highest_impact_order -i all" // -i option of the slivar tsv command that extracts data from the INFO field of the vcf file (https://github.com/brentp/slivar#tsv) for the tsv file output. Example : "-i AC -i AF -i AN". Warning: if one of the -i is not in the vcf file, it will generate an error. Thus, be carefull with what is used in the sample_expr or pedigree_expr parameter. Ignored if tsv_file == "true"
 }
 
 //////// end variables that will be used only in the main.nf
@@ -169,7 +170,7 @@ process {
     }
 
     withLabel: slivar {
-        container='gmillot/slivar_v1.0:gitlab_v8.11'
+        container='gmillot/slivar_v2.0:gitlab_v9.1'
         cpus=1
         memory='60G'
     }
diff --git a/slivar_vcf_extraction.nf b/slivar_vcf_extraction.nf
index 282499393da1ca7253762fbb40e0a2b12c1f948d..2ec34c670a09ee101ef40fe56eaa705fc88881d6 100644
--- a/slivar_vcf_extraction.nf
+++ b/slivar_vcf_extraction.nf
@@ -72,8 +72,11 @@ if( ! sample_expr in String ){
 if( ! pedigree_expr in String ){
     error "\n\n========\n\nERROR IN NEXTFLOW EXECUTION\n\nINVALID pedigree_expr PARAMETER IN nextflow.config FILE:\n${pedigree_expr}\nMUST BE A SINGLE CHARACTER STRING\n\n========\n\n"
 }
-if( ! filter in String ){
-    error "\n\n========\n\nERROR IN NEXTFLOW EXECUTION\n\nINVALID filter PARAMETER IN nextflow.config FILE:\n${filter}\nMUST BE THE SINGLE CHARACTER STRING true OR false\n\n========\n\n"
+if( ! (filter == "true" || filter == "false")){
+    error "\n\n========\n\nERROR IN NEXTFLOW EXECUTION\n\nINVALID filter PARAMETER IN nextflow.config FILE:\n${filter}\nMUST BE THE SINGLE CHARACTER STRING \"true\" OR \"false\"\n\n========\n\n"
+}
+if( ! (tsv_file == "true" || tsv_file == "false")){
+    error "\n\n========\n\nERROR IN NEXTFLOW EXECUTION\n\nINVALID tsv_file PARAMETER IN nextflow.config FILE:\n${tsv_file}\nMUST BE THE SINGLE CHARACTER STRING \"true\" OR \"false\"\n\n========\n\n"
 }
 if( ! tsv_sample in String ){
     error "\n\n========\n\nERROR IN NEXTFLOW EXECUTION\n\nINVALID tsv_sample PARAMETER IN nextflow.config FILE:\n${tsv_sample}\nMUST BE A SINGLE CHARACTER STRING\n\n========\n\n"
@@ -145,10 +148,10 @@ process WorkflowVersion { // create a file with the workflow version in out_path
 
 
 
-process slivar {
+process slivar_extract {
     label 'slivar' // see the withLabel: bash in the nextflow config file 
-    publishDir path: "${out_path}", mode: 'copy', overwrite: false
-    cache 'false'
+    //publishDir path: "${out_path}", mode: 'copy', overwrite: false
+    cache 'true'
 
     //no channel input here for the vcf, because I do not transform it
     input:
@@ -160,25 +163,71 @@ process slivar {
     val sample_expr
     val pedigree_expr
     val filter
+    // see the scope for the use of affected_patients which is already a variable from .config file
+
+    output:
+    file "res.vcf" into vcf_ch1, vcf_ch2
+
+    script:
+    """
+    #!/bin/bash -ue
+    slivar expr --js ${fun} -g ${annot1} -g ${annot2} --vcf ${vcf} --ped ${ped} ${sample_expr} ${pedigree_expr} ${filter} -o "res.vcf"
+    """
+    // write ${} between "" to make a single argument when the variable is made of several values separated by a space. Otherwise, several arguments will be considered
+}
+
+
+process slivar_tsv {
+    label 'slivar' // see the withLabel: bash in the nextflow config file 
+    publishDir path: "${out_path}", mode: 'copy', overwrite: false
+    cache 'true'
+
+    //no channel input here for the vcf, because I do not transform it
+    input:
+    file vcf from vcf_ch1
+    file ped
+    val tsv_file
     val tsv_sample
     val tsv_info
     // see the scope for the use of affected_patients which is already a variable from .config file
 
     output:
-    file "res.vcf"
-    file "res.tsv"
+        file "res.*" optional true
+
 
     script:
     """
     #!/bin/bash -ue
-
-    # add the modification of the pedigree if 
-    slivar expr --js ${fun} -g ${annot1} -g ${annot2} --vcf ${vcf} --ped ${ped} ${sample_expr} ${pedigree_expr} ${filter} -o "res.vcf"
-    slivar tsv --ped ${ped} -s ${tsv_sample} ${tsv_info} res.vcf > res.tsv
+    if [[ ${tsv_file} == true ]] ; then 
+        slivar tsv --ped ${ped} -s ${tsv_sample} ${tsv_info} ${vcf} > res.tsv
+        gzip -f res.tsv 
+    fi
     """
     // write ${} between "" to make a single argument when the variable is made of several values separated by a space. Otherwise, several arguments will be considered
 }
 
+process slivar_vcf_compress {
+    label 'slivar' // see the withLabel: bash in the nextflow config file 
+    publishDir path: "${out_path}", mode: 'copy', overwrite: false
+    cache 'true'
+
+    //no channel input here for the vcf, because I do not transform it
+    input:
+    file vcf from vcf_ch2
+    // see the scope for the use of affected_patients which is already a variable from .config file
+
+    output:
+    file "res.*"
+
+
+    script:
+    """
+    #!/bin/bash -ue
+    bgzip -cf -l 9 ${vcf} > res.vcf.gz # htslib command, -l 9 best compression, -c to standard output, -f to force without asking
+    tabix -p vcf res.vcf.gz # htslib command
+    """
+    // write ${} between "" to make a single argument when the variable is made of several values separated by a space. Otherwise, several arguments will be considered
+}