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Hervé MENAGER
galaxy-cwl-is-docker
Commits
628f8ab5
Commit
628f8ab5
authored
Jun 14, 2019
by
Hervé MENAGER
Browse files
add script to upload material after galaxy launch during build
parent
a02d51eb
Changes
1
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start_galaxy_and_upload_material.sh
0 → 100644
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628f8ab5
set
-m
.
/app/galaxy/.venv/bin/activate
cwltool
--pack
/app/workflow-is-cwl/workflows/cmsearch-multimodel-wf.cwl
>
/app/workflow-is-cwl/workflows/cmsearch-multimodel-wf.packed.cwl
cat
/app/workflow-is-cwl/workflows/cmsearch-multimodel-wf.packed.cwl
sh /app/start.sh &
GALAXY_PID
=
$!
echo
"Galaxy PID is
$GALAXY_PID
"
wait-for-it/wait-for-it.sh
-t
240 localhost:8080
--
sleep
10
echo
"Upload Material to Galaxy"
python /app/upload_material.py
echo
"Kill Galaxy process"
kill
$GALAXY_PID
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