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Hervé MENAGER
galaxy-cwl-is-docker
Commits
98d7b275
Commit
98d7b275
authored
Apr 02, 2019
by
Hervé MENAGER
Browse files
set logging level to warning and reorder docker instructions
parent
63b64840
Pipeline
#10879
passed with stages
in 9 minutes and 14 seconds
Changes
2
Pipelines
1
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Dockerfile
View file @
98d7b275
...
...
@@ -16,14 +16,15 @@ RUN git clone --depth 1 --single-branch --branch assembly --progress https://git
RUN
curl
-sS
https://dl.yarnpkg.com/debian/pubkey.gpg | apt-key add -
RUN
echo
"deb https://dl.yarnpkg.com/debian/ stable main"
|
tee
/etc/apt/sources.list.d/yarn.list
RUN
apt-get update
&&
apt-get
install
-y
yarn
COPY
job_conf.xml /app/galaxy/config/job_conf.xml
COPY
dependency_resolvers_conf.xml /app/galaxy/config/dependency_resolvers_conf.xml
COPY
galaxy.yml /app/galaxy/config/galaxy.yml
COPY
tool_conf.xml /app/galaxy/config/tool_conf.xml
RUN
cd
/app/galaxy
&&
./scripts/common_startup.sh
RUN
cd
/app/galaxy
&&
ls
database/
*
RUN
cd
/app/galaxy
&&
./create_db.sh
RUN
cd
/app/galaxy
&&
./manage_db.sh upgrade
COPY
job_conf.xml /app/galaxy/config/job_conf.xml
COPY
dependency_resolvers_conf.xml /app/galaxy/config/dependency_resolvers_conf.xml
COPY
galaxy.yml /app/galaxy/config/galaxy.yml
COPY
galaxy.yml /app/galaxy/config/galaxy22.yml
COPY
tool_conf.xml /app/galaxy/config/tool_conf.xml
COPY
welcome.html /app/galaxy/static/welcome.html
CMD
["sh", "/app/galaxy/run.sh"]
EXPOSE
8080
galaxy.yml
View file @
98d7b275
...
...
@@ -897,7 +897,7 @@ galaxy:
# here: https://docs.python.org/2/library/logging.html#logging-levels
# A custom debug level of "TRACE" is available for even more
# verbosity.
#
log_level:
DEBU
G
log_level
:
WARNIN
G
# Controls where and how the server logs messages. If unset, the
# default is to log all messages to standard output at the level
...
...
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