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hub-courses
python_one_week_4_biologists_solutions
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99360bf6
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99360bf6
authored
Jun 09, 2021
by
Blaise Li
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Conflict leftovers?
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@@ -359,15 +359,6 @@ In the first algorithm.
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@@ -359,15 +359,6 @@ In the first algorithm.
| so for each kmer we read all the sequence so the algorithm is in O( 4\ :sup:`kmer length` * ``sequence length``)
| so for each kmer we read all the sequence so the algorithm is in O( 4\ :sup:`kmer length` * ``sequence length``)
| In the second algorithm we read the sequence only once
| In the second algorithm we read the sequence only once
=======
In the first algorithm.
| we first compute all kmers we generate 4\ :sup:`kmer length`
| then we count the occurrence of each kmer in the sequence
| so for each kmer we read all the sequence so the algorithm is in O( 4\ :sup:`kmer length` * ``sequence length``)
| In the secon algorithm we read the sequence only once
>>>>>>> e986fb63db27fe063adb907bfb916dbb79c5db9b
| So the algorithm is in O(sequence length)
| So the algorithm is in O(sequence length)
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