From e1e73d4c8790e9d83ac56ef0a97096556cc5a90f Mon Sep 17 00:00:00 2001
From: free hacker <freeh4cker@gmail.com>
Date: Thu, 18 Feb 2016 08:05:19 +0100
Subject: [PATCH] comment is now an optional argumnt of the Sequence init
---
source/_static/code/fasta_object.py | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/source/_static/code/fasta_object.py b/source/_static/code/fasta_object.py
index 963229a..a1a32c8 100644
--- a/source/_static/code/fasta_object.py
+++ b/source/_static/code/fasta_object.py
@@ -1,6 +1,6 @@
class Sequence(object):
- def __init__(self, id_, comment, sequence):
+ def __init__(self, id_, sequence, comment=''):
self.id = id_
self.comment = comment
self.sequence = sequence
@@ -40,8 +40,8 @@ class FastaParser(object):
# a new sequence begin
if self._current_id != '':
new_seq = Sequence(self._current_id,
- self._current_comment,
- self._current_sequence)
+ self._current_sequence,
+ comment=self._current_comment)
self._parse_header(line)
return new_seq
else:
@@ -53,8 +53,8 @@ class FastaParser(object):
raise StopIteration()
else:
new_seq = Sequence(self._current_id,
- self._current_comment,
- self._current_sequence)
+ self._current_sequence,
+ comment=self._current_comment)
self._current_id = ''
self._current_sequence = ''
return new_seq
--
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