Commits · master · hub / 14607-klebsiella-data

05 Mar, 2020 1 commit
- Update README.md · f0fe0594
  Bryan BRANCOTTE authored Mar 05, 2020
  
  f0fe0594
12 Feb, 2020 15 commits
- fix row limit · 047801fb
  Bryan BRANCOTTE authored Feb 12, 2020
  
  047801fb
- test less rows · 04f6b44a
  Bryan BRANCOTTE authored Feb 12, 2020
  
  04f6b44a
- test less rows · fece7885
  Bryan BRANCOTTE authored Feb 12, 2020
  
  fece7885
- minimalist howto · 1ba2ccb6
  Bryan BRANCOTTE authored Feb 12, 2020
  
  1ba2ccb6
- prefer attribute names when they are in lower case without space · 0fe286b6
  Bryan BRANCOTTE authored Feb 12, 2020
  
  0fe286b6
- use csv.writer to produce bio_samples_attributes.csv · 127884d7
  Bryan BRANCOTTE authored Feb 12, 2020
  
  127884d7
- Add as comments in the output file some input parameter · 6ef9becd
  Bryan BRANCOTTE authored Feb 12, 2020
  
  6ef9becd
- adding output files · 68904659
  Bryan BRANCOTTE authored Feb 12, 2020
  
  68904659
- Update .gitlab-ci.yml · 89b00e35
  Bryan BRANCOTTE authored Feb 12, 2020
  
  89b00e35
- Update .gitlab-ci.yml · 9786b2a1
  Bryan BRANCOTTE authored Feb 12, 2020
  
  9786b2a1
- Update .gitlab-ci.yml · 9350eca0
  Bryan BRANCOTTE authored Feb 12, 2020
  
  9350eca0
- adding small test · 3074bd87
  Bryan BRANCOTTE authored Feb 12, 2020
  
  3074bd87
- add a header · 836ba13a
  Bryan BRANCOTTE authored Feb 12, 2020
  
  836ba13a
- remove wrapped biosample field in favor of direct biosample field access · bca90f1e
  Bryan BRANCOTTE authored Feb 12, 2020
  
  bca90f1e
- cache in memory loaded records · f0474e68
  Bryan BRANCOTTE authored Feb 12, 2020
  
  f0474e68
11 Feb, 2020 6 commits
- allow to configure the number of entries an attribute should be filled to be returned in output · 8fd8c923
  Bryan BRANCOTTE authored Feb 11, 2020
  
  8fd8c923
- putting aside cli parameters · 4300adfe
  Bryan BRANCOTTE authored Feb 11, 2020
  
  4300adfe
- prevent error when assembly record cannot be found · 9e245885
  Bryan BRANCOTTE authored Feb 11, 2020
  
  9e245885
- extract all attribut as long as they are in 1% of the entries · 2cd1e05f
  Bryan BRANCOTTE authored Feb 11, 2020
  
  2cd1e05f
- fetching attributes, and keeping only the one filled for percentage of the entries · c6aa2c54
  Bryan BRANCOTTE authored Feb 11, 2020
  
  c6aa2c54
- direct access to bio sample attributes, filtering out None-equivalent values,... · f25901f1
  Bryan BRANCOTTE authored Feb 11, 2020
```
direct access to bio sample attributes, filtering out None-equivalent values, standardizing date and lat_lon attribute
```
  f25901f1
10 Feb, 2020 1 commit
- extract all attributes, and translate them to the most used variant · ee6586f5
  Bryan BRANCOTTE authored Feb 10, 2020
  
  ee6586f5
05 Feb, 2020 3 commits
- extract all variants for an attribute name · e94ccec1
  Bryan BRANCOTTE authored Feb 05, 2020
  
  e94ccec1
- script to fetch all BioSample attributs · 37cad350
  Bryan BRANCOTTE authored Feb 05, 2020
  
  37cad350
- splitting source into multiple file · 66980ab9
  Bryan BRANCOTTE authored Feb 05, 2020
  
  66980ab9
21 Jan, 2020 6 commits
- add the 10 last entries to sample · d555e834
  Bryan BRANCOTTE authored Jan 21, 2020
  
  d555e834
- ability to disabled disk cache · a2cdf317
  Bryan BRANCOTTE authored Jan 21, 2020
  
  a2cdf317
- update .gitignore · f8aa5867
  Bryan BRANCOTTE authored Jan 21, 2020
  
  f8aa5867
- adjust/add new extracted field · 9b76ffa2
  Bryan BRANCOTTE authored Jan 21, 2020
  
  9b76ffa2
- extract sequencing information from sra · f8252eef
  Bryan BRANCOTTE authored Jan 21, 2020
  
  f8252eef
- cache entry name rely on function name · 6b6d24a2
  Bryan BRANCOTTE authored Jan 21, 2020
  
  6b6d24a2
20 Jan, 2020 1 commit
- caching json responses, writing results, more field looked up · 69f0e12d
  Bryan BRANCOTTE authored Jan 20, 2020
  
  69f0e12d
15 Jan, 2020 4 commits
- ignoring venv · 1e9b8c42
  Bryan BRANCOTTE authored Jan 15, 2020
  
  1e9b8c42
- Using biopython to extract host from ncbi · 2764f861
  Bryan BRANCOTTE authored Jan 15, 2020
  
  2764f861
- adding a sample of the data · 3b3db209
  Bryan BRANCOTTE authored Jan 15, 2020
  
  3b3db209
- Update README.md · 17308213
  Bryan BRANCOTTE authored Jan 15, 2020
  
  17308213
14 Jan, 2020 3 commits
- Update README.md · 7815def4
  Bryan BRANCOTTE authored Jan 14, 2020
  
  7815def4
- Update README.md · bd259682
  Bryan BRANCOTTE authored Jan 14, 2020
  
  bd259682
- Update README.md · 13684d03
  Bryan BRANCOTTE authored Jan 14, 2020
  
  13684d03