diff --git a/RunSlurmExample_test.sh b/RunSlurmExample_test.sh
index f51c29938694a7611457dda280fd0393d74727b3..60e7f9d6618e435bc7a8283246ad09a6ea87e9bf 100644
--- a/RunSlurmExample_test.sh
+++ b/RunSlurmExample_test.sh
@@ -23,18 +23,15 @@ export PATH=$PATH:~/tools/WiggleTools/bin/
 #module load R/3.5.0                                                                                                                                                                                                       
 module load R/3.4.1
 #project=Cecum_all
-#project=Liver_all
 #project=Liver_all_T13
 #project=Cecum_2019
 #project=CecAm
-#project=Liver_2019
-#project=LiverZT
 #project=Liver_2019_T13
 #project=Liver_2018_T13
 project=Cecum_allWithoutEc
 
-listfile=$folder/ExpDesign/${project}_List.txt #_Lp8-T3.txt
-expdesign_file=$folder/ExpDesign/${project}_exp_design.txt #_Lp8-T3.txt
+listfile=$folder/ExpDesign/${project}_List.txt 
+expdesign_file=$folder/ExpDesign/${project}_exp_design.txt 
 array=$(wc -l $listfile | awk '{print $1}')
 array="1-"$array
 echo $array
@@ -56,27 +53,28 @@ export PATH=$PATH:~/tools/WiggleTools/bin/
 module load R/3.4.1
 
 # run Mapping
-# sbatch --array=${array} $folderScript/RunMapping.sh $listfile
+sbatch --array=${array} $folderScript/RunMapping.sh $listfile
 
 # seq depth for creating Seqdepth/STAR_nbReads.txt
-# sbatch --array=${array} $folderScript/RunSeqDepth.sh $folder/ExpDesign/${project}_Rename.txt
+sbatch --array=${array} $folderScript/RunSeqDepth.sh $folder/ExpDesign/${project}_Rename.txt
 
 # count number of reads per windows, and calculate median coverage for POI
-# sbatch --array=${array} $folderScript/RunWindowCovRPMF.sh $listfile 
-# sbatch --array=${array} $folderScript/RunWindowCovPOI.sh $listfile 
+sbatch --array=${array} $folderScript/RunWindowCovRPMF.sh $listfile 
+sbatch --array=${array} $folderScript/RunWindowCovPOI.sh $listfile 
 
-# # create median wig for Searching max coverage
-# sbatch $folderScript/RunMeanBigWig.sh $project all
+# create median wig for Searching max coverage
+sbatch $folderScript/RunMeanBigWig.sh $project all
 
-# sbatch $folderScript/RunMeanBigWig.sh $project abx
-# sbatch $folderScript/RunMeanBigWig.sh $project abx_GF
-# sbatch $folderScript/RunMeanBigWig.sh $project ex_GF
-# sbatch $folderScript/RunMeanBigWig.sh $project Am
-# sbatch $folderScript/RunMeanBigWig.sh $project CONV
-# sbatch $folderScript/RunMeanBigWig.sh $project Ec
-# sbatch $folderScript/RunMeanBigWig.sh $project GF
-# sbatch $folderScript/RunMeanBigWig.sh $project Lp
-# sbatch $folderScript/RunMeanBigWig.sh $project vanco
+# create median coverage wig file for each condition
+sbatch $folderScript/RunMeanBigWig.sh $project abx
+sbatch $folderScript/RunMeanBigWig.sh $project abx_GF
+sbatch $folderScript/RunMeanBigWig.sh $project ex_GF
+sbatch $folderScript/RunMeanBigWig.sh $project Am
+sbatch $folderScript/RunMeanBigWig.sh $project CONV
+sbatch $folderScript/RunMeanBigWig.sh $project Ec
+sbatch $folderScript/RunMeanBigWig.sh $project GF
+sbatch $folderScript/RunMeanBigWig.sh $project Lp
+sbatch $folderScript/RunMeanBigWig.sh $project vanco
 
 
  # sbatch $folderScript/RunMeanBigWig.sh $project Am_Liver_2018
@@ -98,78 +96,78 @@ module load R/3.4.1
  # sbatch $folderScript/RunMeanBigWig.sh $project Liver_Lp_T3
 
 
-# # Ru Peak detection for every dataset
-# sbatch --array=${array} $folderScript/RunPeakDetection.sh $expdesign_file MACS2
-# sbatch --array=${array} $folderScript/RunPeakDetection.sh $expdesign_file POI
-# sbatch --array=${array} $folderScript/RunPeakDetection.sh $expdesign_file RPMF
+# Run Peak detection for every dataset
+sbatch --array=${array} $folderScript/RunPeakDetection.sh $expdesign_file MACS2
+sbatch --array=${array} $folderScript/RunPeakDetection.sh $expdesign_file POI
+sbatch --array=${array} $folderScript/RunPeakDetection.sh $expdesign_file RPMF
 # attention! FIsher ne marche pas si HTSeq est loade pour des histoires obscures de library
-#module unload HTSeq
-# sbatch --array=${array} $folderScript/RunPeakDetection.sh $expdesign_file Fisher
+module unload HTSeq
+sbatch --array=${array} $folderScript/RunPeakDetection.sh $expdesign_file Fisher
 
 # # Finalize peaks detection : filter by peak occurence and regroup with bedtools
-# sbatch $folderScript/RunFinalize.sh $project POI
-# sbatch $folderScript/RunFinalize.sh $project MACS2
-# sbatch $folderScript/RunFinalize.sh $project RPMF
-# sbatch $folderScript/RunFinalize.sh $project Fisher
+sbatch $folderScript/RunFinalize.sh $project POI
+sbatch $folderScript/RunFinalize.sh $project MACS2
+sbatch $folderScript/RunFinalize.sh $project RPMF
+sbatch $folderScript/RunFinalize.sh $project Fisher
 # # for every technique ->  
 # # final_bedfile = PATH_PEAKS + exp_design_name + '_' + peak_technique + ‘_Raw.bed'
 
 # # Annotate peaks, search for overlapping genes, create gif and bed file, overlap with ref peaks
-# sbatch $folderScript/RunAnnotation.sh $project Fisher Raw
-# sbatch $folderScript/RunAnnotation.sh $project POI Raw
-# sbatch $folderScript/RunAnnotation.sh $project RPMF Raw
-# sbatch $folderScript/RunAnnotation.sh $project MACS2 Raw
+sbatch $folderScript/RunAnnotation.sh $project Fisher Raw
+sbatch $folderScript/RunAnnotation.sh $project POI Raw
+sbatch $folderScript/RunAnnotation.sh $project RPMF Raw
+sbatch $folderScript/RunAnnotation.sh $project MACS2 Raw
 # # final_bedfile = PATH_PEAKS + exp_design_name + '_' + peak_technique + ‘_Raw.bed’
 
 
-# # Search for Max coverage = summit of the peaks
- bed_name=Raw
-#  sbatch $folderScript/RunSearchMax.sh $project MACS2 $bed_name
-#  sbatch $folderScript/RunSearchMax.sh $project RPMF $bed_name
-#  sbatch $folderScript/RunSearchMax.sh $project POI $bed_name
-#  sbatch $folderScript/RunSearchMax.sh $project Fisher $bed_name
+# Search for Max coverage = summit of the peaks
+bed_name=Raw
+sbatch $folderScript/RunSearchMax.sh $project MACS2 $bed_name
+sbatch $folderScript/RunSearchMax.sh $project RPMF $bed_name
+sbatch $folderScript/RunSearchMax.sh $project POI $bed_name
+sbatch $folderScript/RunSearchMax.sh $project Fisher $bed_name
 #  # final_bedfile = PATH_PEAKS + exp_design_name + '_' + peak_technique + ‘_MaxValues.bed’
 
 
 
-# # Regroup peaks from different techniques
- min_number_technique=3
- bed_name=Raw
- #sbatch $folderScript/RunRegroup.sh $project $bed_name $min_number_technique
- #sbatch $folderScript/RunAnnotation.sh $project All ${bed_name}_$min_number_technique
- bed_name=MaxValues
- #sbatch $folderScript/RunRegroup.sh $project $bed_name $min_number_technique
- #sbatch $folderScript/RunAnnotation.sh $project All ${bed_name}_$min_number_technique
+# Regroup peaks from different techniques
+min_number_technique=3
+# bed_name=Raw
+# sbatch $folderScript/RunRegroup.sh $project $bed_name $min_number_technique
+# sbatch $folderScript/RunAnnotation.sh $project All ${bed_name}_$min_number_technique
+bed_name=MaxValues
+sbatch $folderScript/RunRegroup.sh $project $bed_name $min_number_technique
+sbatch $folderScript/RunAnnotation.sh $project All ${bed_name}_$min_number_technique
 
 
- ###### ADDED By Christophe, to get MaxMaxValues
- bed_name_max=${bed_name}_${min_number_technique}
- #sbatch $folderScript/RunSearchMax.sh $project All $bed_name_max
- #sbatch $folderScript/RunAnnotation.sh $project All MaxMaxValues_$min_number_technique                                                                                       
+# Get MaxMaxValues
+bed_name_max=${bed_name}_${min_number_technique}
+sbatch $folderScript/RunSearchMax.sh $project All $bed_name_max
+sbatch $folderScript/RunAnnotation.sh $project All MaxMaxValues_$min_number_technique                                                                                       
 
 
-# #Run HTSeq for peaks
- bed_name=Raw
- bed_name_peak=${bed_name}_$min_number_technique
+# Run HTSeq for peaks
+bed_name=Raw
+bed_name_peak=${bed_name}_$min_number_technique
 # array=1-64
 # sbatch --array=${array} $folderScript/RunHTSeqPeaks.sh $listfile $project $bed_name_peak
- bed_name=MaxValues 
- bed_name_peak=${bed_name}_$min_number_technique
- #sbatch --array=${array} $folderScript/RunHTSeqPeaks.sh $listfile $project $bed_name_peak
- bed_name=MaxMaxValues 
- bed_name_peak=${bed_name}_$min_number_technique
- sbatch --array=${array} $folderScript/RunHTSeqPeaks.sh $listfile $project $bed_name_peak
-
-# # Run differential analysis
- bed_name=Raw
- bed_name_peak=${bed_name}_$min_number_technique
- #sbatch $folderScript/RunDiffMeth.sh $project $bed_name_peak
- bed_name=MaxValues
- bed_name_peak=${bed_name}_$min_number_technique
- #sbatch $folderScript/RunDiffMeth.sh $project $bed_name_peak
- bed_name=MaxMaxValues
- bed_name_peak=${bed_name}_$min_number_technique
-# sbatch $folderScript/RunDiffMeth.sh $project $bed_name_peak
+bed_name=MaxValues 
+bed_name_peak=${bed_name}_$min_number_technique
+#sbatch --array=${array} $folderScript/RunHTSeqPeaks.sh $listfile $project $bed_name_peak
+bed_name=MaxMaxValues 
+bed_name_peak=${bed_name}_$min_number_technique
+sbatch --array=${array} $folderScript/RunHTSeqPeaks.sh $listfile $project $bed_name_peak
+
+# Run differential analysis
+bed_name=Raw
+bed_name_peak=${bed_name}_$min_number_technique
+#sbatch $folderScript/RunDiffMeth.sh $project $bed_name_peak
+bed_name=MaxValues
+bed_name_peak=${bed_name}_$min_number_technique
+#sbatch $folderScript/RunDiffMeth.sh $project $bed_name_peak
+bed_name=MaxMaxValues
+bed_name_peak=${bed_name}_$min_number_technique
+sbatch $folderScript/RunDiffMeth.sh $project $bed_name_peak
 
 # # run Guitarplot and motif search
 #sbatch --array=1-78 $folderScript/RunGuitarPlot.sh ExpDesign/Cecum_all_GuitarPlots.txt