From be2156bddae9a72827bf17f43a2b83050299af87 Mon Sep 17 00:00:00 2001 From: Claudia CHICA <claudia.chica@pasteur.fr> Date: Tue, 17 May 2022 16:38:31 +0200 Subject: [PATCH] Update README.md --- README.md | 25 ++++++++----------------- 1 file changed, 8 insertions(+), 17 deletions(-) diff --git a/README.md b/README.md index 3ad66f6..9480733 100644 --- a/README.md +++ b/README.md @@ -8,6 +8,8 @@ Biological material & question: **Datasets used for practical:** +Giulia Manina +Melanie Hamon ## Data @@ -15,21 +17,9 @@ Biological material & question: -**ChIP-seq Hands-On:** +**Annotation Hands-On:** ``` -GSM2629955 SRR5572646 ChIP-seq_H3K27ac_D4_shCtrl_rep1 -GSM2629956 SRR5572647 ChIP-seq_H3K27ac_D4_shCtrl_rep2 -GSM2629961 SRR5572652 ChIP-seq_INPUT_D4_shCtrl_rep1 -GSM2629962 SRR5572653 ChIP-seq_INPUT_D4_shCtrl_rep2 -GSM2629967 SRR5572658 ChIP-seq_H3K27ac_D4_shUbc9_rep1 -GSM2629968 SRR5572659 ChIP-seq_H3K27ac_D4_shUbc9_rep2 -GSM2629973 SRR5572664 ChIP-seq_INPUT_D4_shUbc9_rep1 -GSM2629974 SRR5572665 ChIP-seq_INPUT_D4_shUbc9_rep2 -GSM2629977 SRR5572668 ChIP-seq_Klf4_D4_shCtrl_rep1 -GSM2629978 SRR5572669 ChIP-seq_Klf4_D4_shCtrl_rep2 -GSM2629985 SRR5572676 ChIP-seq_Klf4_D4_shUbc9_rep1 -GSM2629986 SRR5572677 ChIP-seq_Klf4_D4_shUbc9_rep2 ``` @@ -49,10 +39,11 @@ GSM2629996 SRR5572692 ATAC-seq_D4_shUbc9_rep3 | Course | training | |-----------|--------------------| -| ChIPseq: QC metrics | [Hands-on](Monday/ePeak_QC_metrics.md) | -| ChIPseq: Peak calling | [Hands-on](Tuesday/ePeak_PeakCalling.md) | -| Visualization: IGV | [Hands-on](Tuesday/IGV.md) | -| Visualization: Deeptools | [Hands-on](Tuesday/Deeptools.md) | +| Functional annotation: Annotation basics | [Hands-on](Monday/Annotation_basics.Rmd) | +| Functional annotation: Annotation advanced | [Hands-on](Monday/Annotation_advanced.md) | +| Integration: Functional integration | [Hands-on](Tuesday/Functional integration.Rmd) | +| Functional analysis: ORA and GSEA | [Hands-on](Tuesday/ORA_and_GSEA.Rmd) | +| Functional analysis: GREAT | [Hands-on](Tuesday/GREAT.md) | | ATACseq: analysis | [Hands-on](Wednesday/ATACflow.md) | | ChIPseq: Differential binding | [Hands-on](Thursday/chipflowR.md) | | ChIPseq: Peak annotation | [Hands-on](Thursday/peak_annotation.Rmd ) | -- GitLab