From c173d4eec7af17562bcc1358557160ed89745b47 Mon Sep 17 00:00:00 2001
From: Claudia  CHICA <claudia.chica@pasteur.fr>
Date: Thu, 19 May 2022 21:21:45 +0200
Subject: [PATCH] Update Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md,
 Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.1.bed,
 Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.2.bed,
 Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.3.bed,
 Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.4.bed

---
 .../GREAT/GREAT_analysis_forEpigenomicData.md |  236 ++++
 ...SUMO2profileClust_DMccGenes_AllPeaks.1.bed |  258 ++++
 ...SUMO2profileClust_DMccGenes_AllPeaks.2.bed | 1237 +++++++++++++++++
 ...SUMO2profileClust_DMccGenes_AllPeaks.3.bed |  884 ++++++++++++
 ...SUMO2profileClust_DMccGenes_AllPeaks.4.bed |  589 ++++++++
 Tuesday/GREAT_analysis_forEpigenomicData.md   |    1 -
 6 files changed, 3204 insertions(+), 1 deletion(-)
 create mode 100644 Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md
 create mode 100644 Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.1.bed
 create mode 100644 Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.2.bed
 create mode 100644 Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.3.bed
 create mode 100644 Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.4.bed
 delete mode 100644 Tuesday/GREAT_analysis_forEpigenomicData.md

diff --git a/Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md b/Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md
new file mode 100644
index 0000000..056ab6c
--- /dev/null
+++ b/Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md
@@ -0,0 +1,236 @@
+# Hands-On: ChIPseq functional analysis 
+
+GREAT is a tool GREAT for the functional analysis of cis-regulatory regions. Assigns biological meaning to a set of non-coding genomic regions by analyzing the annotations of the nearby genes. It is thus useful for peaks identified by any epigenomic profiling technique.
+http://great.stanford.edu/public/html/
+
+## Data 
+
+Regions (peaks) showing significant changes in SUMO enrichment among cell cycle phases, classified in 4 profiles by profile clustering. 
+
+
+## get ePeak on your home
+
+* Load modules (ON CLUSTER ONLY)
+
+```
+module load snakemake/6.5.0
+module load python/3.7
+module load singularity
+module load git-lfs/2.13.1
+module load pysam
+```
+
+* Clone workflow:
+
+`git clone https://gitlab.pasteur.fr/hub/ePeak.git`
+
+* Download singularity container:
+
+```
+cd ePeak
+singularity pull --arch amd64 --name epeak.img  library://rlegendre/epeak/epeak:1.0
+```
+
+## configure ePeak
+
+Open config/config.yaml and config/design.txt files
+
+* **Design file:** tabulated file of 4 columns.
+
+**Column 1** is the name of the IP file
+
+**Column 2** is the name of the corresponding INPUT file
+
+**Column 3** is the replicate number of IP file
+
+**Column 4** is the replicate number of the corresponding INPUT file
+
+
+```
+IP_NAME	INPUT_NAME	NB_IP	NB_INPUT
+H3K27ac_shCtrl	INPUT_shCtrl	1	1
+H3K27ac_shCtrl	INPUT_shCtrl	2	1
+H3K27ac_shUbc9	INPUT_shUbc9	1	1
+H3K27ac_shUbc9	INPUT_shUbc9	2	1
+Klf4_shCtrl	INPUT_shCtrl	1	1
+Klf4_shCtrl	INPUT_shCtrl	2	2
+Klf4_shUbc9	INPUT_shUbc9	1	1
+Klf4_shUbc9	INPUT_shUbc9	2	2
+```
+
+* **Config file:** yaml file containing all tools parameters
+
+This file is divided into _chunks_. Each chunk correspond to one step or one tool.
+
+
+This first chunk provides input information and assigns working directories. 
+`input_dir` path to FASTQ files directory. 
+`input_mate` mate pair format (i.e. `_R[12]` for *MATE* = R1 or R2) , must match the *MATE* parameter in FASTQ files.
+`input_extension` filename extension format (i.e. `fastq.gz` or `fq.gz`).
+`analysis_dir` path to analysis directory.
+`tmpdir` path to temporary directory (i.e. `/tmp/` or other)
+
+```
+input_dir: ../ChIP_data
+input_mate: '_R[12]'
+input_extension: '.fastq.gz'
+analysis_dir: $HOME #define for each user
+tmpdir: $TMPDIR
+```
+
+
+The design chunk aims to check that the FASTQ files name match the design file information. The `marks`, `conditions` and `replicates` parameters must respectively match the *MARK*, *COND* and *REP* parameters of the FASTQ files name and the design file. 
+For spike-in data, set `spike` on "True" and provide the spike-in genome FASTA file path through the `spike_genome_file` parameter.
+
+```
+design:
+    design_file: config/design.txt    
+    marks: H3K27ac, Klf4
+    condition: shCtrl, shUbc9
+    replicates: Rep
+    spike: false
+    spike_genome_file: genome/dmel9.fa
+```
+
+
+This genome chunk provides information about reference genome - directory, name of the index and path to fasta file.
+
+```
+genome:
+    index: yes
+    genome_directory: genome/
+    name: mm10
+    fasta_file: genome/mm10_chr1.fa
+```
+
+The fastqc chunk provides quality control checking of fastq files.
+
+```
+fastqc:
+    options: ''
+    threads: 4   
+```
+
+The adapters chunk is relative to quality trimming and adapter removal with cutadapt. A list of common adapters is provided under config directory and give to cutadapt (adapter_list). Then, different parameters are tuned to match precisely with the data.
+
+
+```
+adapters:
+    remove: yes
+    adapter_list: file:config/adapt.fa
+    m: 25
+    mode: a
+    options: -O 6 --trim-n --max-n 1 
+    quality: 30
+    threads: 4
+```
+
+
+The bowtie2_mapping chunk is relative to the reads mapping against genome file (provided by the genome chunk)
+
+```
+bowtie2_mapping:
+    options: "--very-sensitive --no-unal"
+    threads: 4
+```
+
+
+The mark duplicates chunk allows to mark PCR duplicate in BAM files. For ChIPseq data, IP and INPUT need to be deduplicated, so the dedup_IP parameter is set to True.
+
+
+```
+mark_duplicates:
+    do: yes
+    dedup_IP: 'True' 
+    threads: 4
+```
+
+The remove_biasedRegions chunk is relative to remove biased genomic regions (previously named blacklisted regions)
+
+```
+remove_biasedRegions:
+    do: yes
+    bed_file: genome/mm10.blacklist.bed
+    threads: 1
+```
+
+To produce metaregion profiles, coverages from each samples need to be producted.
+
+See https://deeptools.readthedocs.io/en/latest/content/feature/effectiveGenomeSize.html
+
+```
+bamCoverage:
+    do: yes
+    options: "--binSize 10 --effectiveGenomeSize 2652783500 --normalizeUsing RPGC" 
+    spike-in: no
+    threads: 4
+```
+
+Set yes to geneBody chunk to produce metaregion profiles. This step need a gene model file in bed format.
+
+```
+geneBody:
+    do: yes
+    regionsFileName: genome/mm10_chr1_RefSeq.bed
+    threads: 4
+```
+
+Set all following chunks 'do' to 'no' for now.
+
+
+## run ePeak
+
+
+Test your configuration by performing a dry-run via:
+
+`snakemake --use-singularity -n --cores 1`
+
+Execute the workflow locally using $N cores via:
+
+```
+export PICARD_TOOLS_JAVA_OPTS="-Xmx8G"
+N=8
+snakemake --use-singularity --singularity-args "-B '/home/'" --cores $N
+```
+
+
+Run it specifically on Slurm cluster:
+
+`sbatch snakemake --use-singularity --singularity-args "-B '$HOME'" --cluster-config config/cluster_config.json --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} " -j 200 --nolock --cores $SLURM_JOB_CPUS_PER_NODE`
+
+
+## analyse QC reports
+
+### Look at MultiQC report
+
+- General statistics
+
+<img src="images/Multiqc_mainStats.png" width="1000" align="center" >
+ 
+- Mapping with bowtie2
+
+<img src="images/bowtie2_se_plot.png" width="700" align="center" > 
+
+- Deduplication with MarkDuplicates
+
+<img src="images/picard_deduplication.png" width="700" align="center" >
+
+- Fingerplot
+
+<img src="images/deeptools_fingerprint_plot.png" width="700" align="center" >
+
+
+### Look at 05-QC directory
+
+- Cross correlation
+ 
+ <img src="images/H3K27ac_shCtrl_ppqt.png" width="700" align="center" >  <img src="images/Klf4_shCtrl_ppqt.png" width="700" align="center" >
+
+- GeneBody plot/heatmap
+  
+<img src="images/geneBodyplot.png" width="700" align="center" >
+
+
+
+
+Would you proceed to the analysis ? justify why
diff --git a/Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.1.bed b/Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.1.bed
new file mode 100644
index 0000000..4c25329
--- /dev/null
+++ b/Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.1.bed
@@ -0,0 +1,258 @@
+chr1	8936460	8937789
+chr1	10115619	10116192
+chr1	14025973	14026698
+chr1	16992395	16994186
+chr1	27018592	27020067
+chr1	41432961	41434038
+chr1	63988701	63989342
+chr1	70820325	70821084
+chr1	93297377	93297928
+chr1	112937199	112937770
+chr1	114889199	114889463
+chr1	115711029	115711830
+chr1	145114345	145114914
+chr1	149223221	149224466
+chr1	149812035	149814764
+chr1	149822207	149824953
+chr1	161409810	161412577
+chr1	161412757	161414347
+chr1	161416081	161421416
+chr1	161427558	161428626
+chr1	161430712	161434751
+chr1	161434913	161436273
+chr1	161581264	161583133
+chr1	162532797	162533545
+chr1	171711091	171711506
+chr1	204475365	204476644
+chr1	216637813	216638490
+chr1	223053945	223054532
+chr1	224371978	224372608
+chr1	229406243	229406846
+chr10	22518197	22518841
+chr10	22623911	22624784
+chr10	43635316	43635705
+chr10	54074023	54074660
+chr10	73526065	73527145
+chr10	77158391	77160127
+chr10	106098111	106099013
+chr10	124713850	124714565
+chr10	131909905	131910476
+chr10	133793605	133794610
+chr11	28131558	28132243
+chr11	35684265	35685586
+chr11	43902000	43902585
+chr11	59323260	59325539
+chr11	59327448	59328228
+chr11	59333193	59334193
+chr11	59522542	59522813
+chr11	62608445	62609435
+chr11	65684972	65686489
+chr11	77790789	77791760
+chr11	118306802	118307244
+chr11	125469186	125469954
+chr12	752410	753043
+chr12	2861817	2862135
+chr12	6832803	6833128
+chr12	8184960	8185237
+chr12	27330457	27331200
+chr12	49659334	49661373
+chr12	89919639	89920346
+chr12	104674597	104675174
+chr12	109530930	109531465
+chr12	125423657	125425644
+chr13	25874879	25875608
+chr13	41767487	41768438
+chr13	47468275	47468565
+chr13	110435886	110438009
+chr13	114564567	114566182
+chr13	114880083	114881778
+chr14	20810803	20811804
+chr14	21077984	21079028
+chr14	21080936	21082519
+chr14	21149488	21150562
+chr14	21151059	21152690
+chr14	35015820	35016958
+chr14	35843311	35843797
+chr14	45722466	45723647
+chr14	50052584	50054002
+chr14	50328318	50329800
+chr14	77491527	77493701
+chr14	90797660	90798219
+chr15	26326755	26327723
+chr15	40225488	40226023
+chr15	45490465	45491649
+chr15	45492089	45493871
+chr15	57025837	57026297
+chr15	64679661	64680255
+chr15	66161018	66161993
+chr15	71407043	71407892
+chr15	79164410	79165267
+chr15	100347274	100347720
+chr16	686356	687018
+chr16	1358743	1359588
+chr16	2801568	2802146
+chr16	4357127	4357636
+chr16	4588763	4589472
+chr16	22013281	22013666
+chr16	23567909	23568607
+chr16	27251984	27253571
+chr16	29625147	29625416
+chr16	29874376	29875158
+chr16	86540801	86541797
+chr16	86545907	86547721
+chr17	1959274	1962883
+chr17	2304781	2305394
+chr17	8089212	8091612
+chr17	8123724	8126930
+chr17	16120219	16120655
+chr17	17743038	17743466
+chr17	18906163	18907488
+chr17	18965054	18965957
+chr17	18966710	18967639
+chr17	19015099	19016159
+chr17	19091149	19092295
+chr17	34891485	34892091
+chr17	38804020	38804326
+chr17	43224862	43225523
+chr17	57286713	57287543
+chr17	79482652	79483376
+chr18	67872705	67873392
+chr19	1021316	1022633
+chr19	2540707	2541250
+chr19	4057794	4058613
+chr19	5172801	5173180
+chr19	7196914	7197917
+chr19	13961903	13962534
+chr19	31723327	31724220
+chr19	38530380	38531548
+chr19	39342846	39343501
+chr19	39898128	39899392
+chr19	42758146	42758538
+chr19	43980350	43980903
+chr19	44066443	44067427
+chr19	45879277	45880020
+chr19	45907100	45910540
+chr19	45988191	45989551
+chr2	27886224	27887385
+chr2	30457061	30457779
+chr2	36665472	36666482
+chr2	43451264	43452916
+chr2	61991643	61992421
+chr2	86666679	86668317
+chr2	87755815	87761827
+chr2	91814853	91815615
+chr2	96011518	96011922
+chr2	112246879	112251843
+chr2	113993850	113994798
+chr2	132439605	132440316
+chr2	144772983	144773816
+chr2	178128111	178128501
+chr2	192543399	192545737
+chr2	201980057	201980932
+chr2	201982275	201982819
+chr2	227699784	227700711
+chr2	234776518	234777068
+chr2	236376130	236376459
+chr20	1447443	1447770
+chr20	52824226	52824634
+chr21	27306551	27307584
+chr21	40685507	40685878
+chr22	20118465	20118782
+chr22	23522413	23522721
+chr22	28197784	28198279
+chr22	37827792	37829615
+chr22	38902752	38903360
+chr3	8808994	8809591
+chr3	40518099	40518552
+chr3	49131476	49132262
+chr3	50358674	50359634
+chr3	52090538	52091277
+chr3	61546346	61546712
+chr3	131221575	131222062
+chr3	159847128	159848121
+chr3	186500909	186501605
+chr3	197807514	197808018
+chr4	8279966	8280926
+chr4	57974539	57976303
+chr4	75239877	75241442
+chr4	84177774	84178167
+chr4	140785421	140785917
+chr4	146100901	146101342
+chr4	169803721	169804351
+chr4	190970565	190971151
+chr5	32585190	32585707
+chr5	42991146	42992652
+chr5	53814226	53816740
+chr5	69344956	69345570
+chr5	70220386	70221004
+chr5	79702834	79703182
+chr5	80256949	80258176
+chr5	111496247	111496654
+chr5	133968271	133969094
+chr5	137687544	137688530
+chr5	137801953	137803487
+chr5	140090265	140091387
+chr5	142784844	142785559
+chr5	148825754	148826069
+chr5	156569199	156569855
+chr5	175964458	175965332
+chr5	180632953	180635436
+chr5	180643902	180646013
+chr6	1610790	1612269
+chr6	26310917	26314440
+chr6	26321804	26323970
+chr6	26522175	26523074
+chr6	26571401	26573254
+chr6	27144783	27146178
+chr6	27446160	27447801
+chr6	27463127	27464449
+chr6	27486612	27487945
+chr6	27655088	27656567
+chr6	27720757	27721530
+chr6	27763171	27764010
+chr6	27870065	27871041
+chr6	28805555	28807038
+chr6	28831020	28832444
+chr6	28848638	28849916
+chr6	28863746	28864788
+chr6	28907969	28909782
+chr6	28910761	28912918
+chr6	28948999	28950649
+chr6	43027204	43027657
+chr6	44214561	44215164
+chr6	139695726	139696912
+chr6	151188327	151188721
+chr6	158403463	158405211
+chr7	582834	583471
+chr7	944973	946311
+chr7	6864865	6865252
+chr7	30027963	30028399
+chr7	40174143	40174641
+chr7	41066710	41069301
+chr7	66206595	66207249
+chr7	72589263	72590008
+chr7	72680277	72681754
+chr7	74142982	74143538
+chr7	74234211	74235341
+chr7	74541016	74542239
+chr7	74632621	74633134
+chr7	99156920	99157921
+chr7	101777751	101778198
+chr7	102789986	102790569
+chr7	148659675	148660985
+chr7	148680513	148681304
+chr7	148683933	148684719
+chr7	148959049	148960257
+chr8	11058283	11059553
+chr8	30668293	30669606
+chr8	41711920	41712715
+chr8	67024925	67027397
+chr8	126175092	126175771
+chr8	145992367	145993721
+chr9	27111789	27112394
+chr9	93956052	93957182
+chr9	95087418	95087879
+chr9	98269684	98270359
+chr9	99983791	99984212
+chr9	126695554	126696023
+chr9	132244816	132245244
diff --git a/Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.2.bed b/Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.2.bed
new file mode 100644
index 0000000..3aaf377
--- /dev/null
+++ b/Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.2.bed
@@ -0,0 +1,1237 @@
+chr1	2454633	2455463
+chr1	7130223	7131192
+chr1	7360156	7361730
+chr1	8082806	8085181
+chr1	8153783	8157089
+chr1	9256197	9258249
+chr1	9266876	9268237
+chr1	11968017	11968944
+chr1	14843487	14844582
+chr1	18199912	18201989
+chr1	19766920	19767297
+chr1	21587481	21588796
+chr1	21664433	21665340
+chr1	25073328	25074378
+chr1	27070581	27071218
+chr1	28974962	28975566
+chr1	32261490	32263893
+chr1	32701524	32702540
+chr1	38288467	38289460
+chr1	40723156	40724178
+chr1	42921135	42921889
+chr1	43636686	43638161
+chr1	43672533	43673501
+chr1	43991634	43992316
+chr1	45241991	45242799
+chr1	46153487	46154326
+chr1	52690727	52691377
+chr1	55316136	55316830
+chr1	55775755	55777164
+chr1	55894388	55897156
+chr1	55908525	55909708
+chr1	56189775	56191145
+chr1	56921961	56922795
+chr1	57297056	57298681
+chr1	57890220	57890653
+chr1	59228585	59229721
+chr1	61649378	61650186
+chr1	62190538	62191216
+chr1	63155055	63156479
+chr1	65398690	65399582
+chr1	66799197	66799561
+chr1	66993265	66993791
+chr1	67007846	67008891
+chr1	67019391	67019993
+chr1	68586937	68587853
+chr1	71546233	71547797
+chr1	77505068	77505854
+chr1	79157137	79158397
+chr1	79788887	79789791
+chr1	82266014	82266570
+chr1	84944314	84945441
+chr1	85317012	85318181
+chr1	86047403	86050745
+chr1	87332287	87332682
+chr1	87800178	87800979
+chr1	90136897	90138634
+chr1	94996872	95007064
+chr1	95193339	95194122
+chr1	97829409	97829882
+chr1	98552336	98552768
+chr1	109739558	109741167
+chr1	111505518	111507680
+chr1	120905772	120906697
+chr1	144891150	144893018
+chr1	145438142	145439184
+chr1	145968764	145969749
+chr1	147510653	147511358
+chr1	147994006	147994960
+chr1	148241329	148242058
+chr1	148604537	148605648
+chr1	148766527	148767172
+chr1	148952730	148953512
+chr1	149513784	149514857
+chr1	149782667	149784221
+chr1	149803456	149805861
+chr1	149830956	149833527
+chr1	150577485	150577865
+chr1	150584120	150584992
+chr1	161675801	161677190
+chr1	164740956	164742142
+chr1	165840708	165841371
+chr1	169863099	169863903
+chr1	170634226	170635558
+chr1	172113676	172114253
+chr1	172223356	172224375
+chr1	172605366	172607840
+chr1	172923943	172925425
+chr1	173683657	173684409
+chr1	174757910	174758686
+chr1	177224345	177226047
+chr1	177842310	177843076
+chr1	179845841	179847147
+chr1	181059739	181061063
+chr1	182924787	182926277
+chr1	183236768	183237957
+chr1	186156856	186157590
+chr1	186943472	186944395
+chr1	186970424	186971047
+chr1	187459939	187460973
+chr1	188059238	188059674
+chr1	201520559	201522134
+chr1	201571838	201573596
+chr1	201608879	201610451
+chr1	201679508	201680332
+chr1	203764703	203765758
+chr1	204263223	204263939
+chr1	207063789	207065353
+chr1	210000766	210002862
+chr1	210547161	210548066
+chr1	218457748	218458960
+chr1	218669857	218670253
+chr1	222042296	222042818
+chr1	230239824	230241512
+chr1	240396957	240398889
+chr1	240448392	240449463
+chr1	240476271	240476583
+chr1	240577356	240577824
+chr1	240578286	240578714
+chr1	245986273	245987348
+chr1	246034941	246035978
+chr1	246166099	246167110
+chr1	246771853	246772585
+chr10	4284818	4286190
+chr10	4289450	4289858
+chr10	6424781	6425488
+chr10	10542316	10543659
+chr10	10827420	10828705
+chr10	12237453	12238662
+chr10	14026088	14027469
+chr10	14643589	14644796
+chr10	19940293	19941108
+chr10	23620415	23621364
+chr10	28376751	28377281
+chr10	29790554	29790959
+chr10	31426290	31427114
+chr10	33271142	33271868
+chr10	33404801	33406095
+chr10	33444680	33446612
+chr10	34926251	34926745
+chr10	35928549	35929192
+chr10	36782864	36783319
+chr10	44363018	44363782
+chr10	48276860	48277531
+chr10	48600266	48602737
+chr10	49813853	49815589
+chr10	53459098	53460453
+chr10	61599518	61600033
+chr10	63022083	63022886
+chr10	63796818	63797500
+chr10	63810385	63813363
+chr10	69853908	69854907
+chr10	78922575	78922875
+chr10	79080102	79081971
+chr10	79114676	79116040
+chr10	79150800	79152281
+chr10	80691059	80692617
+chr10	81966506	81967669
+chr10	82237278	82238187
+chr10	90641358	90642318
+chr10	90846439	90847373
+chr10	95230901	95231234
+chr10	95462288	95462953
+chr10	97453826	97454143
+chr10	97849374	97850609
+chr10	97889021	97890483
+chr10	103806303	103806735
+chr10	106051191	106051560
+chr10	106089004	106089932
+chr10	114206458	114207285
+chr10	114853672	114854060
+chr10	118976001	118976663
+chr10	122610426	122611003
+chr10	124228270	124229362
+chr10	127751015	127751954
+chr10	127887722	127888692
+chr10	128075407	128076110
+chr10	128109524	128110940
+chr10	131819406	131819931
+chr10	134479142	134481650
+chr11	7998732	7999650
+chr11	8739100	8740052
+chr11	12106671	12109245
+chr11	12109361	12112523
+chr11	12203777	12205021
+chr11	15127883	15128805
+chr11	19616711	19618564
+chr11	19701165	19702573
+chr11	20180054	20180905
+chr11	23561444	23562116
+chr11	26222920	26223404
+chr11	26971490	26972596
+chr11	28857598	28858223
+chr11	28984551	28985198
+chr11	29140952	29142368
+chr11	33710361	33711801
+chr11	35165465	35167812
+chr11	35255718	35257368
+chr11	35282187	35282672
+chr11	35601128	35602068
+chr11	36095479	36097124
+chr11	36170916	36171649
+chr11	36768681	36769009
+chr11	46722126	46722867
+chr11	47745667	47746077
+chr11	57045222	57046108
+chr11	57226066	57226594
+chr11	59578104	59578560
+chr11	64632586	64633627
+chr11	65190135	65191604
+chr11	65266280	65266985
+chr11	66659535	66660172
+chr11	68983138	68984128
+chr11	69063783	69066068
+chr11	69067545	69069899
+chr11	69258978	69260014
+chr11	70265765	70266593
+chr11	70496327	70497027
+chr11	74581818	74582741
+chr11	79608172	79609077
+chr11	82611803	82612972
+chr11	82997201	82997700
+chr11	86319165	86319838
+chr11	88277443	88277890
+chr11	92733656	92734569
+chr11	94609308	94610294
+chr11	99196565	99196965
+chr11	102630958	102631735
+chr11	103831261	103832238
+chr11	104917395	104918298
+chr11	107727689	107729008
+chr11	111944619	111945710
+chr11	117068324	117069701
+chr11	117070870	117073271
+chr11	121337135	121337555
+chr11	121465834	121467610
+chr11	121963917	121968654
+chr11	122049172	122052372
+chr11	122056356	122057762
+chr11	122071246	122072488
+chr11	122072733	122076185
+chr11	122085873	122086551
+chr11	126350487	126351077
+chr11	126660137	126661093
+chr11	126687012	126687444
+chr11	128079807	128080868
+chr11	129150114	129150657
+chr11	129233855	129234453
+chr11	130869943	130871106
+chr11	131543832	131544530
+chr11	131545332	131546048
+chr11	131781347	131782662
+chr11	131925411	131927147
+chr11	131927281	131928813
+chr11	131934514	131935422
+chr12	2366120	2366609
+chr12	4385860	4386416
+chr12	7592227	7593143
+chr12	8086920	8088400
+chr12	10020836	10021249
+chr12	11638911	11639817
+chr12	12799027	12799452
+chr12	12956725	12957188
+chr12	14923328	14924225
+chr12	14926465	14927624
+chr12	15846045	15846968
+chr12	18536045	18536532
+chr12	19864738	19866130
+chr12	20644832	20645868
+chr12	24263492	24264402
+chr12	24531323	24531950
+chr12	25982173	25982547
+chr12	32830639	32831046
+chr12	38710302	38710833
+chr12	40592171	40592617
+chr12	47471298	47472782
+chr12	49523923	49524395
+chr12	49524544	49525218
+chr12	51441423	51441937
+chr12	56435006	56436388
+chr12	56510256	56510671
+chr12	57482127	57482908
+chr12	58704529	58705433
+chr12	58902372	58903687
+chr12	60093031	60093758
+chr12	62672978	62673369
+chr12	63096113	63097038
+chr12	66246738	66248342
+chr12	69080524	69081210
+chr12	72232804	72233769
+chr12	75728031	75728568
+chr12	75874479	75875050
+chr12	75905001	75906158
+chr12	82752050	82752774
+chr12	88692755	88694057
+chr12	88702631	88703542
+chr12	89461291	89461714
+chr12	89556527	89556911
+chr12	90150198	90150819
+chr12	90484744	90485428
+chr12	94168984	94171987
+chr12	94173458	94174388
+chr12	94177570	94178488
+chr12	94184580	94185288
+chr12	96820949	96821381
+chr12	109247907	109251248
+chr12	109914661	109915619
+chr12	110545320	110545734
+chr12	113652763	113653346
+chr12	115106497	115107509
+chr12	115121675	115122313
+chr12	115123115	115125266
+chr12	115371101	115372065
+chr12	115664788	115665431
+chr12	116818778	116820198
+chr12	118628105	118628721
+chr12	120729315	120729889
+chr12	123574556	123575176
+chr12	124869214	124871620
+chr12	125398438	125399494
+chr12	128043796	128045495
+chr13	30323408	30324620
+chr13	31287043	31287698
+chr13	33802683	33804554
+chr13	41362616	41363173
+chr13	41705590	41706746
+chr13	43543671	43544184
+chr13	45827481	45828144
+chr13	49427599	49428698
+chr13	49887843	49889113
+chr13	52217010	52217962
+chr13	63615702	63616282
+chr13	75340905	75341570
+chr13	79980414	79981123
+chr13	80253466	80253839
+chr13	80614598	80615196
+chr13	80911044	80912540
+chr13	87776255	87777279
+chr13	94519579	94520475
+chr13	94745477	94746058
+chr13	95735759	95736754
+chr13	97908613	97909138
+chr13	101061105	101061932
+chr13	101910317	101911091
+chr13	102938403	102939724
+chr13	106566915	106567642
+chr13	106642899	106643744
+chr13	107862600	107863727
+chr13	107909778	107912061
+chr13	110667975	110671209
+chr13	110746847	110747491
+chr13	110907102	110908603
+chr13	110971626	110972819
+chr13	110981655	110983505
+chr13	111060475	111062870
+chr13	111063801	111065995
+chr13	113840055	113841947
+chr13	113842057	113843025
+chr13	114618854	114620028
+chr13	114629255	114631881
+chr14	20773918	20774309
+chr14	23937931	23938609
+chr14	37413285	37414126
+chr14	37640960	37641763
+chr14	42609854	42610614
+chr14	49053241	49053588
+chr14	50448864	50449636
+chr14	51925340	51925883
+chr14	52047754	52048333
+chr14	52924572	52925013
+chr14	55239519	55241230
+chr14	56800111	56800868
+chr14	56806220	56807457
+chr14	57046039	57046416
+chr14	59198459	59199117
+chr14	59748357	59749457
+chr14	61201190	61201692
+chr14	61645145	61646008
+chr14	62014100	62015024
+chr14	62431558	62432107
+chr14	67880700	67881832
+chr14	68831852	68832271
+chr14	70464644	70466790
+chr14	72078276	72078798
+chr14	73104396	73105204
+chr14	73930032	73931497
+chr14	76182702	76183184
+chr14	79477291	79478787
+chr14	80891815	80892914
+chr14	81334142	81334732
+chr14	87896008	87897590
+chr14	89017636	89018442
+chr14	89891631	89892888
+chr14	90006633	90007139
+chr14	90279904	90280916
+chr14	90311929	90312686
+chr14	90367170	90368044
+chr14	95993695	95994155
+chr14	96715446	96716206
+chr14	100497493	100498487
+chr14	100841195	100841805
+chr14	101466701	101468678
+chr15	26028589	26029889
+chr15	31931002	31931623
+chr15	32975953	32977195
+chr15	33130634	33131362
+chr15	33142060	33142888
+chr15	33380792	33381285
+chr15	33404593	33407385
+chr15	36720054	36720848
+chr15	39178835	39179734
+chr15	39186379	39187456
+chr15	39593677	39594383
+chr15	39873821	39875132
+chr15	39877555	39882702
+chr15	43442411	43443396
+chr15	49231177	49233054
+chr15	50123570	50124417
+chr15	50147663	50148559
+chr15	52387415	52388521
+chr15	55487626	55488303
+chr15	56189283	56190285
+chr15	56207372	56209650
+chr15	56537944	56538790
+chr15	57452913	57453369
+chr15	60687301	60689351
+chr15	62695212	62696291
+chr15	63219739	63221524
+chr15	63224535	63225431
+chr15	65587954	65588895
+chr15	65596857	65597550
+chr15	66796933	66797905
+chr15	67441923	67443105
+chr15	68127920	68128803
+chr15	69595705	69598557
+chr15	71586410	71589203
+chr15	80263095	80263799
+chr15	80891512	80892589
+chr15	81605013	81605972
+chr15	83654232	83654946
+chr15	84516915	84517405
+chr15	89630546	89631195
+chr15	91413033	91413545
+chr15	96102529	96103633
+chr15	96828401	96829446
+chr15	96876224	96878320
+chr15	96884500	96885469
+chr15	99439457	99440593
+chr15	101716657	101717160
+chr16	1741444	1742551
+chr16	4020891	4021680
+chr16	8964433	8965013
+chr16	12416524	12417336
+chr16	14265802	14266710
+chr16	14397043	14398847
+chr16	15187282	15187779
+chr16	18801543	18802507
+chr16	19897417	19897930
+chr16	21830675	21831952
+chr16	22384217	22384859
+chr16	27378502	27380140
+chr16	29282608	29284105
+chr16	30932965	30934108
+chr16	46855844	46856552
+chr16	51183121	51183977
+chr16	51187538	51190506
+chr16	51911360	51911914
+chr16	65104734	65106183
+chr16	65369969	65370784
+chr16	72961711	72962236
+chr16	82672059	82672586
+chr16	82687415	82687860
+chr16	83377374	83377964
+chr16	86421092	86422830
+chr16	86488556	86490032
+chr16	86613022	86614995
+chr16	86618207	86620395
+chr16	86985026	86986326
+chr16	87900508	87902375
+chr16	88216642	88220683
+chr16	89390190	89391820
+chr17	2095257	2096451
+chr17	4871805	4872848
+chr17	13249858	13250968
+chr17	13323944	13324632
+chr17	13630244	13631944
+chr17	14641973	14642405
+chr17	14736751	14737374
+chr17	19092681	19093861
+chr17	19099600	19100648
+chr17	37356356	37356853
+chr17	40670477	40671296
+chr17	49010574	49011065
+chr17	54864376	54865400
+chr17	55536557	55537392
+chr17	55969785	55970672
+chr17	56708798	56709348
+chr17	57916406	57922667
+chr17	59278608	59278870
+chr17	59328069	59329209
+chr17	59361521	59362283
+chr17	59387597	59387983
+chr17	59402529	59403953
+chr17	59412562	59413442
+chr17	59414727	59415772
+chr17	62703092	62704134
+chr17	62728396	62728908
+chr17	66377106	66378082
+chr17	67753346	67754485
+chr17	67757224	67758831
+chr17	69646064	69646863
+chr17	70118697	70120939
+chr17	70335035	70335783
+chr17	72199580	72199928
+chr17	74367851	74368315
+chr17	75416402	75417829
+chr17	76588291	76589164
+chr17	78735243	78736014
+chr17	78866225	78867342
+chr17	79474541	79476806
+chr17	80889631	80890757
+chr18	844869	845578
+chr18	20047456	20049387
+chr18	20887079	20888498
+chr18	22677040	22677414
+chr18	23317332	23318383
+chr18	38652697	38654200
+chr18	39534740	39535100
+chr18	41472742	41473422
+chr18	46253950	46255501
+chr18	46581478	46582652
+chr18	47217305	47218030
+chr18	52628174	52628707
+chr18	53182297	53184124
+chr18	53500309	53501301
+chr18	53815602	53815979
+chr18	56246155	56247827
+chr18	59400147	59401231
+chr18	59665278	59666383
+chr18	68087144	68088066
+chr18	72748885	72749928
+chr18	74060740	74061567
+chr18	74207556	74208883
+chr18	74783478	74784498
+chr18	77138823	77139374
+chr18	77348604	77349629
+chr19	342615	343863
+chr19	8488591	8489009
+chr19	9731686	9732654
+chr19	10926655	10927446
+chr19	13908835	13909235
+chr19	13951175	13952732
+chr19	16178282	16181123
+chr19	17191008	17191753
+chr19	17200119	17200469
+chr19	19626298	19627209
+chr19	31617431	31618324
+chr19	31939107	31939759
+chr19	35167694	35168331
+chr19	37157482	37158042
+chr19	37708576	37709292
+chr19	38488582	38489018
+chr19	38489676	38490744
+chr19	40791587	40792120
+chr19	41815400	41816532
+chr19	43768583	43769986
+chr19	44645416	44646781
+chr19	45188198	45189728
+chr19	49533024	49534139
+chr19	49540749	49542248
+chr19	51897315	51898164
+chr19	52390776	52391447
+chr19	52510626	52512152
+chr19	53496412	53497134
+chr19	54023555	54024651
+chr19	55883883	55884522
+chr19	55895997	55896447
+chr19	56784723	56785242
+chr2	1560587	1561034
+chr2	1608178	1610360
+chr2	1656604	1657637
+chr2	1733456	1734783
+chr2	1745665	1746517
+chr2	3623774	3624552
+chr2	8802411	8803102
+chr2	11919181	11919792
+chr2	16789647	16790653
+chr2	17827072	17827736
+chr2	20792418	20794352
+chr2	21022512	21023097
+chr2	21673952	21675426
+chr2	23641017	23642621
+chr2	28184631	28185324
+chr2	30887318	30888351
+chr2	31605588	31606855
+chr2	33294682	33296695
+chr2	33376614	33377122
+chr2	40265562	40266489
+chr2	42064011	42064685
+chr2	49077092	49077393
+chr2	54440189	54440725
+chr2	55329239	55329829
+chr2	61244181	61245153
+chr2	61985856	61986487
+chr2	63001714	63002083
+chr2	65547140	65547996
+chr2	66665238	66668272
+chr2	67483293	67484772
+chr2	67877804	67878307
+chr2	68143989	68145401
+chr2	69389880	69390463
+chr2	70016189	70016752
+chr2	70312726	70313592
+chr2	85552724	85554937
+chr2	87745035	87746419
+chr2	87754704	87755237
+chr2	87808626	87809805
+chr2	88353948	88354649
+chr2	100314475	100315371
+chr2	102843785	102844740
+chr2	102847353	102848572
+chr2	106013703	106014344
+chr2	106021736	106022620
+chr2	109268427	109269453
+chr2	110654975	110657454
+chr2	112198639	112199881
+chr2	118738397	118739122
+chr2	120013040	120014195
+chr2	121556126	121556961
+chr2	129342185	129343070
+chr2	151344085	151344531
+chr2	151426902	151427526
+chr2	157176013	157180163
+chr2	158579080	158579571
+chr2	162949422	162950244
+chr2	164205522	164206036
+chr2	164523775	164524786
+chr2	170364242	170364843
+chr2	173117757	173118700
+chr2	178029308	178029614
+chr2	178262345	178263241
+chr2	179387537	179388249
+chr2	185464099	185464563
+chr2	196384835	196385492
+chr2	197158766	197159217
+chr2	197664116	197665226
+chr2	198513176	198513684
+chr2	200093642	200094729
+chr2	201263254	201264595
+chr2	201936285	201936903
+chr2	208118006	208119612
+chr2	208120073	208123761
+chr2	208195380	208196304
+chr2	208258675	208260994
+chr2	216300159	216301928
+chr2	217930337	217931821
+chr2	218248175	218248915
+chr2	220852486	220853337
+chr2	223572262	223573313
+chr2	226943846	226944803
+chr2	226983229	226984297
+chr2	227290777	227291491
+chr2	228682530	228684269
+chr2	228726894	228727682
+chr2	230271777	230273514
+chr2	234357725	234358030
+chr2	238086684	238088845
+chr2	238188303	238189203
+chr2	238190080	238192883
+chr2	238341020	238342988
+chr2	238408818	238410079
+chr2	239347803	239348910
+chr2	239772393	239773080
+chr2	240202368	240203436
+chr20	2118022	2118913
+chr20	2450883	2451780
+chr20	9015879	9016390
+chr20	16710141	16710906
+chr20	19867353	19868048
+chr20	37522363	37522732
+chr20	45587270	45587942
+chr20	45587970	45588565
+chr20	49943567	49945184
+chr20	49961822	49963891
+chr20	49970603	49974199
+chr20	49982181	49983780
+chr20	52515604	52516775
+chr20	55362198	55364240
+chr20	55965641	55966379
+chr20	57117104	57118670
+chr20	58825188	58826032
+chr20	62313374	62314269
+chr21	17054302	17055159
+chr21	26935006	26935869
+chr21	27173619	27174269
+chr21	30517676	30518115
+chr21	30672182	30673384
+chr21	31090524	31091270
+chr21	36178680	36180628
+chr21	36207896	36209153
+chr21	36254094	36256493
+chr21	36950496	36951812
+chr21	37849978	37851272
+chr21	38774571	38774976
+chr21	39661624	39662322
+chr21	39682378	39683159
+chr21	39694214	39695034
+chr21	39695092	39695878
+chr21	39721783	39724393
+chr21	43372429	43373265
+chr21	43378025	43378849
+chr21	46495416	46496326
+chr21	47469146	47470764
+chr21	47519862	47521881
+chr22	27105564	27106283
+chr22	27166564	27167147
+chr22	27524905	27525918
+chr22	27852527	27853858
+chr22	30217205	30217920
+chr22	30591549	30593433
+chr22	30637975	30638997
+chr22	30639639	30640651
+chr22	30641053	30642092
+chr22	33108544	33109035
+chr22	35696929	35697844
+chr22	36724363	36729856
+chr22	36752866	36754849
+chr22	36760317	36761346
+chr22	40356910	40358254
+chr22	44757748	44760452
+chr22	47149622	47150948
+chr3	5020647	5022783
+chr3	5024582	5026509
+chr3	5062889	5064258
+chr3	10215125	10215897
+chr3	11196802	11197456
+chr3	11280294	11281111
+chr3	11550898	11552044
+chr3	11564208	11565440
+chr3	11609321	11610429
+chr3	16154071	16155423
+chr3	23691235	23692678
+chr3	27523673	27524389
+chr3	29735268	29735746
+chr3	30700881	30701450
+chr3	38847195	38847724
+chr3	43231784	43233319
+chr3	43673644	43674392
+chr3	43777541	43778301
+chr3	45105953	45107300
+chr3	48630789	48632278
+chr3	55200317	55202796
+chr3	55513272	55515473
+chr3	55516006	55518904
+chr3	56528656	56529160
+chr3	57014618	57015523
+chr3	59412068	59413456
+chr3	62135737	62136277
+chr3	62304688	62305419
+chr3	67163894	67164674
+chr3	69100045	69100829
+chr3	70905981	70906567
+chr3	71149497	71150637
+chr3	71150919	71151986
+chr3	99792687	99793261
+chr3	101620822	101621292
+chr3	105546806	105547247
+chr3	110138996	110139519
+chr3	117427176	117427728
+chr3	119029771	119030738
+chr3	120460318	120461155
+chr3	120499747	120500381
+chr3	122399917	122401005
+chr3	123371261	123371894
+chr3	125708734	125709742
+chr3	127486677	127487417
+chr3	131753510	131754046
+chr3	141030333	141031093
+chr3	141085096	141087345
+chr3	141087391	141089532
+chr3	141121702	141123962
+chr3	149093056	149095826
+chr3	150999484	151000189
+chr3	157154304	157154940
+chr3	157827416	157827930
+chr3	159572235	159572911
+chr3	171859819	171861024
+chr3	171918975	171920161
+chr3	174667052	174667746
+chr3	174720273	174721955
+chr3	176914280	176916019
+chr3	177063393	177063775
+chr3	179262450	179263485
+chr3	187456201	187457593
+chr3	188326010	188326571
+chr3	188524570	188525196
+chr3	190283773	190285136
+chr3	194205002	194205857
+chr3	194281767	194282415
+chr3	194292284	194295274
+chr3	194840062	194841478
+chr4	1191850	1192688
+chr4	2664389	2664804
+chr4	7267867	7269176
+chr4	7648267	7653190
+chr4	7845286	7846804
+chr4	10457652	10458998
+chr4	17028868	17030154
+chr4	19439740	19440087
+chr4	24129570	24130484
+chr4	24211973	24212568
+chr4	26585220	26585945
+chr4	39032086	39033631
+chr4	39047774	39049536
+chr4	40842905	40843518
+chr4	53438956	53439760
+chr4	56042011	56042959
+chr4	68587337	68588301
+chr4	74570019	74571328
+chr4	77482959	77483312
+chr4	77702859	77703516
+chr4	78783564	78784169
+chr4	83810373	83811299
+chr4	86701487	86702533
+chr4	86704501	86705345
+chr4	99549070	99549693
+chr4	100222374	100223265
+chr4	106629565	106630051
+chr4	113558471	113558862
+chr4	114468626	114469119
+chr4	119199167	119200575
+chr4	122615122	122615861
+chr4	122721713	122722710
+chr4	124261154	124262201
+chr4	124752978	124754686
+chr4	129206141	129207394
+chr4	129449975	129450806
+chr4	131399138	131400001
+chr4	138449076	138449872
+chr4	157751391	157751914
+chr4	159235835	159237030
+chr4	164415019	164416122
+chr4	167501050	167502085
+chr4	177710677	177712185
+chr4	178098320	178099229
+chr4	182880348	182880854
+chr4	188523464	188524765
+chr4	189326052	189327478
+chr4	189365526	189370511
+chr5	1788640	1790594
+chr5	6377506	6378136
+chr5	8844780	8845706
+chr5	8906461	8908838
+chr5	9547116	9548157
+chr5	9888072	9889034
+chr5	10704955	10705517
+chr5	10719382	10721455
+chr5	10759615	10760393
+chr5	17180797	17182170
+chr5	17249224	17249885
+chr5	27327993	27328526
+chr5	31123546	31125366
+chr5	31133626	31133960
+chr5	31224967	31225966
+chr5	32767946	32768925
+chr5	38846722	38847228
+chr5	40833872	40836183
+chr5	42948895	42953699
+chr5	42993564	42994356
+chr5	42994426	42996029
+chr5	43008263	43008967
+chr5	43018938	43020814
+chr5	43036540	43043732
+chr5	43064769	43065330
+chr5	43065532	43066341
+chr5	43192856	43193775
+chr5	54279005	54279461
+chr5	54280558	54281785
+chr5	56834240	56834598
+chr5	68856504	68856877
+chr5	74062706	74063374
+chr5	76086598	76086981
+chr5	79270684	79271630
+chr5	92525014	92525973
+chr5	92922598	92924974
+chr5	94926958	94927536
+chr5	95593336	95594364
+chr5	96869780	96870207
+chr5	98103855	98104218
+chr5	98110354	98111803
+chr5	102455310	102456071
+chr5	114598578	114599428
+chr5	126423971	126424252
+chr5	134645273	134646645
+chr5	135374243	135375149
+chr5	137073561	137074176
+chr5	140699127	140700808
+chr5	140904055	140904701
+chr5	140943590	140944090
+chr5	141037729	141038252
+chr5	141928203	141928927
+chr5	142641315	142642611
+chr5	142777121	142779192
+chr5	142934620	142935153
+chr5	143569367	143570100
+chr5	144741606	144742289
+chr5	150160013	150160957
+chr5	151038461	151039382
+chr5	151119295	151120596
+chr5	153008533	153009520
+chr5	156811148	156813011
+chr5	159428094	159428538
+chr5	169010811	169012715
+chr5	169077700	169078944
+chr5	169169938	169170586
+chr5	169405496	169408041
+chr5	171844103	171846205
+chr5	172195306	172196900
+chr5	172226462	172228080
+chr5	172329455	172330559
+chr5	172336538	172338607
+chr5	172369651	172371429
+chr5	172571302	172571658
+chr5	172878996	172882843
+chr5	179660606	179661022
+chr5	179757713	179759337
+chr6	1325734	1326665
+chr6	4351423	4353300
+chr6	8108149	8109556
+chr6	9482209	9482692
+chr6	11207186	11207856
+chr6	11608908	11610467
+chr6	11632333	11633727
+chr6	11652867	11654202
+chr6	11711663	11713337
+chr6	11766821	11767107
+chr6	11770784	11772652
+chr6	14035482	14036337
+chr6	14476886	14477914
+chr6	16762693	16763605
+chr6	21900717	21901260
+chr6	22249052	22249671
+chr6	23174441	23175908
+chr6	24721707	24722266
+chr6	26016964	26018460
+chr6	26020129	26021569
+chr6	26021674	26022601
+chr6	26026194	26027702
+chr6	26031508	26033935
+chr6	26043314	26044901
+chr6	26045475	26046526
+chr6	26054790	26055457
+chr6	26055530	26056843
+chr6	26064791	26065302
+chr6	26103969	26104853
+chr6	26122692	26124976
+chr6	26157133	26159353
+chr6	26183514	26184451
+chr6	26188470	26189537
+chr6	26196555	26197878
+chr6	26198441	26200175
+chr6	26204267	26206356
+chr6	26215516	26218177
+chr6	26224459	26226556
+chr6	26233639	26235374
+chr6	26240451	26241994
+chr6	26249838	26251290
+chr6	26270302	26271768
+chr6	26284360	26287116
+chr6	27100343	27100897
+chr6	27106799	27108289
+chr6	27356481	27356964
+chr6	27758716	27760772
+chr6	27777566	27778990
+chr6	27781468	27783822
+chr6	27791505	27792798
+chr6	27798228	27799626
+chr6	27833547	27835499
+chr6	27839000	27840311
+chr6	27840366	27841885
+chr6	27857517	27858652
+chr6	28048508	28048960
+chr6	28129127	28129914
+chr6	28367096	28368110
+chr6	28984253	28985211
+chr6	30748886	30750061
+chr6	41286485	41287260
+chr6	45413370	45414347
+chr6	48394350	48395185
+chr6	52402763	52404709
+chr6	54757590	54758318
+chr6	56819578	56820388
+chr6	71998977	72000681
+chr6	73121745	73122830
+chr6	74513252	74513931
+chr6	75905184	75906925
+chr6	75911501	75912848
+chr6	78166154	78166584
+chr6	82463562	82463886
+chr6	84577303	84577782
+chr6	86173846	86175063
+chr6	99841878	99842399
+chr6	100016034	100016854
+chr6	105622687	105623134
+chr6	106056676	106057875
+chr6	106535562	106538258
+chr6	106545420	106546491
+chr6	117761656	117763375
+chr6	117826588	117827142
+chr6	119467875	119468937
+chr6	121758602	121760331
+chr6	121841929	121842578
+chr6	121974346	121975424
+chr6	127241134	127241824
+chr6	132269490	132272710
+chr6	132375516	132376158
+chr6	134490376	134491749
+chr6	134769173	134769898
+chr6	136335509	136337080
+chr6	140382899	140383808
+chr6	141883017	141884266
+chr6	143902968	143903548
+chr6	147178640	147179083
+chr6	148685137	148685916
+chr6	148778173	148779365
+chr6	151357271	151358778
+chr6	151361872	151363197
+chr6	151647664	151648512
+chr6	152415638	152417043
+chr6	158245690	158246525
+chr6	159063712	159064946
+chr6	161589265	161589861
+chr6	161791834	161792204
+chr6	163730654	163731432
+chr6	166263903	166264283
+chr6	167008662	167009156
+chr6	168435233	168437219
+chr6	169827775	169828269
+chr6	169852169	169852818
+chr6	170019279	170019802
+chr7	1268100	1272548
+chr7	1274281	1278787
+chr7	1559774	1560862
+chr7	2153296	2154374
+chr7	4785894	4786621
+chr7	12796570	12797350
+chr7	18705618	18706108
+chr7	22603485	22605690
+chr7	25605493	25605804
+chr7	26240125	26240404
+chr7	27686401	27687294
+chr7	28117795	28118326
+chr7	32529567	32530281
+chr7	41086825	41087985
+chr7	41093103	41095599
+chr7	41136499	41138320
+chr7	41229488	41230118
+chr7	41734208	41739949
+chr7	41955711	41956853
+chr7	47618036	47618776
+chr7	55052756	55053272
+chr7	55088209	55089373
+chr7	55119851	55120766
+chr7	55132847	55134859
+chr7	55265988	55266788
+chr7	64022931	64023596
+chr7	70099146	70100142
+chr7	73283279	73284636
+chr7	77648207	77648682
+chr7	77931076	77931444
+chr7	85118869	85119258
+chr7	90208569	90209217
+chr7	90457808	90458774
+chr7	90895422	90896282
+chr7	91509759	91510877
+chr7	92861069	92861981
+chr7	93685869	93686642
+chr7	94285275	94286617
+chr7	100764810	100766359
+chr7	100769351	100772404
+chr7	101524643	101526350
+chr7	103277149	103278121
+chr7	105416504	105417415
+chr7	105470159	105471299
+chr7	106358640	106359361
+chr7	111470132	111470578
+chr7	111841522	111842355
+chr7	113725442	113726010
+chr7	115967579	115968187
+chr7	123367163	123368226
+chr7	124099206	124099943
+chr7	124403527	124404438
+chr7	124420598	124421029
+chr7	130587819	130589480
+chr7	130593954	130595943
+chr7	130600377	130601697
+chr7	130626061	130626727
+chr7	130699673	130701098
+chr7	134332196	134333618
+chr7	137615653	137615946
+chr7	137674436	137676297
+chr7	137687069	137687670
+chr7	139365398	139366414
+chr7	139588799	139589215
+chr7	141437728	141438335
+chr7	142190521	142191387
+chr7	150923823	150924728
+chr7	154861545	154862039
+chr7	154997600	154998486
+chr7	155445384	155446272
+chr8	1693321	1694329
+chr8	6404241	6406146
+chr8	6414516	6415908
+chr8	6456042	6456895
+chr8	7378894	7379210
+chr8	10008709	10009884
+chr8	11337574	11339600
+chr8	11366041	11367227
+chr8	11372944	11374102
+chr8	11723982	11724550
+chr8	13122695	13123582
+chr8	13223016	13224744
+chr8	16265605	16267094
+chr8	18953373	18954097
+chr8	19028492	19029213
+chr8	23646369	23647517
+chr8	27089315	27089931
+chr8	27950463	27950748
+chr8	28747391	28748147
+chr8	30013548	30015330
+chr8	32188630	32189885
+chr8	32300391	32300780
+chr8	37000372	37001516
+chr8	38857663	38858383
+chr8	40010812	40011784
+chr8	41574960	41575806
+chr8	49022699	49023020
+chr8	49502245	49503312
+chr8	49815299	49817496
+chr8	62624707	62625264
+chr8	72753252	72755075
+chr8	72985773	72987558
+chr8	95272238	95273107
+chr8	96804849	96805556
+chr8	100025056	100025819
+chr8	106656013	106656646
+chr8	107071760	107073228
+chr8	109260314	109261697
+chr8	116462078	116462773
+chr8	117456212	117457816
+chr8	119908874	119909889
+chr8	121457010	121458084
+chr8	126244898	126245647
+chr8	126373594	126375425
+chr8	127846143	127846758
+chr8	128403395	128404047
+chr8	128910707	128912504
+chr8	128930321	128931628
+chr8	129188803	129189520
+chr8	131274943	131275479
+chr8	131290894	131291670
+chr8	134048507	134049605
+chr8	134902482	134903493
+chr8	140970924	140971756
+chr8	141642951	141644116
+chr8	141654851	141655473
+chr9	4099780	4100203
+chr9	4143711	4144567
+chr9	12784341	12785405
+chr9	21554726	21557700
+chr9	21682833	21684481
+chr9	27123874	27124659
+chr9	27194367	27194853
+chr9	32430954	32432348
+chr9	33813808	33814915
+chr9	34179662	34180737
+chr9	34992000	34993081
+chr9	35490506	35491379
+chr9	36029630	36030524
+chr9	37952107	37954931
+chr9	38047526	38048144
+chr9	67292734	67294135
+chr9	71199318	71199784
+chr9	81675786	81676208
+chr9	86570895	86572324
+chr9	89563086	89563721
+chr9	91730268	91731974
+chr9	91790766	91791482
+chr9	93888934	93889817
+chr9	93941919	93942799
+chr9	93959402	93960338
+chr9	97623163	97624560
+chr9	100638989	100639634
+chr9	101079481	101080271
+chr9	101081219	101081654
+chr9	101096133	101096945
+chr9	101250858	101251716
+chr9	109561490	109562179
+chr9	109622009	109624304
+chr9	109975052	109976276
+chr9	111205665	111206675
+chr9	111273325	111274020
+chr9	112580061	112580661
+chr9	112674359	112674943
+chr9	113388675	113389369
+chr9	115986126	115986587
+chr9	117877526	117879785
+chr9	118916861	118918167
+chr9	123165033	123166049
+chr9	125133590	125135649
+chr9	125145678	125147040
+chr9	125164476	125165983
+chr9	126890738	126891498
+chr9	127177449	127178489
+chr9	127722453	127723260
+chr9	129261549	129261794
+chr9	129893386	129894950
+chr9	130301557	130302517
+chr9	130324589	130325700
+chr9	132890594	132891366
+chr9	133638378	133638764
+chrX	7252746	7253191
+chrX	9582263	9582651
+chrX	23802314	23803202
+chrX	30672339	30673013
+chrX	45374462	45375407
+chrX	53254186	53254708
+chrX	56794574	56795342
+chrX	56805430	56806182
+chrX	64815178	64815915
+chrX	71496810	71497407
+chrX	71526763	71527168
+chrX	75364535	75365932
+chrX	75369013	75370143
+chrX	95939185	95939926
+chrX	108973802	108974757
+chrX	108974966	108975842
+chrX	129402823	129403236
diff --git a/Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.3.bed b/Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.3.bed
new file mode 100644
index 0000000..fe99711
--- /dev/null
+++ b/Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.3.bed
@@ -0,0 +1,884 @@
+chr1	154236	155262
+chr1	689762	690770
+chr1	1011131	1011982
+chr1	1058583	1060013
+chr1	1126955	1127479
+chr1	2420100	2420628
+chr1	3599775	3600145
+chr1	6410695	6411245
+chr1	6801335	6802057
+chr1	8184792	8185351
+chr1	8958257	8958920
+chr1	9091046	9091773
+chr1	9155639	9156425
+chr1	9214714	9216132
+chr1	9454958	9455490
+chr1	11801567	11801851
+chr1	12236417	12236948
+chr1	15364571	15365806
+chr1	16355635	16356560
+chr1	16359740	16360157
+chr1	16377271	16378117
+chr1	16434312	16435396
+chr1	17628134	17628761
+chr1	19415367	19415824
+chr1	19873332	19874514
+chr1	19876545	19877318
+chr1	20056632	20057194
+chr1	20188329	20188785
+chr1	20375452	20376332
+chr1	21141370	21141870
+chr1	21713662	21714283
+chr1	21924788	21925919
+chr1	21975803	21976295
+chr1	22998464	22998878
+chr1	24179002	24179543
+chr1	25125151	25125872
+chr1	25881390	25882580
+chr1	26595534	26596110
+chr1	26921757	26923652
+chr1	31355482	31355939
+chr1	31609028	31609468
+chr1	31939670	31940470
+chr1	31979377	31979808
+chr1	33440925	33441467
+chr1	33516561	33517466
+chr1	33689756	33690353
+chr1	33975270	33975644
+chr1	39443798	39444254
+chr1	41359539	41360625
+chr1	41909932	41910703
+chr1	42969548	42970643
+chr1	43712719	43713784
+chr1	44640290	44640884
+chr1	45723457	45724443
+chr1	48653504	48654132
+chr1	51620184	51620918
+chr1	53671714	53672409
+chr1	53748981	53750185
+chr1	54021325	54023356
+chr1	64666253	64667554
+chr1	67533246	67533834
+chr1	71804715	71805576
+chr1	85258026	85258459
+chr1	86680796	86681442
+chr1	94417417	94418000
+chr1	94572162	94573490
+chr1	94915196	94916793
+chr1	97521772	97522866
+chr1	100224101	100224855
+chr1	109327698	109328999
+chr1	109997022	109997714
+chr1	110226726	110227760
+chr1	110245054	110246440
+chr1	113441577	113442056
+chr1	149196753	149197332
+chr1	155611926	155613526
+chr1	161588122	161588994
+chr1	162808585	162809352
+chr1	166690367	166690882
+chr1	167750789	167751312
+chr1	172783395	172783985
+chr1	173439580	173440365
+chr1	174318523	174320150
+chr1	181141737	181142525
+chr1	184782483	184783179
+chr1	184996333	184997227
+chr1	203030508	203030890
+chr1	203225609	203226483
+chr1	204181917	204182231
+chr1	204186388	204187009
+chr1	210368933	210370321
+chr1	212951847	212952386
+chr1	218680402	218681748
+chr1	222660416	222660899
+chr1	225009035	225009993
+chr1	231634688	231635560
+chr1	232235623	232236134
+chr1	234781486	234782193
+chr1	234803463	234804145
+chr1	240142676	240143164
+chr1	243240795	243241463
+chr1	246525765	246526785
+chr1	247279175	247282536
+chr1	248584484	248585150
+chr1	248833206	248833908
+chr1	248877488	248878040
+chr10	1026320	1027015
+chr10	3427616	3428357
+chr10	10826230	10826705
+chr10	30271905	30272773
+chr10	31972032	31973148
+chr10	38715572	38716165
+chr10	54264831	54265646
+chr10	70037488	70038102
+chr10	71467952	71468445
+chr10	72408082	72408953
+chr10	75083755	75084188
+chr10	77093756	77094054
+chr10	80002810	80003355
+chr10	81827686	81828502
+chr10	91013782	91014328
+chr10	99703097	99703439
+chr10	100106380	100107510
+chr10	101651008	101652105
+chr10	111393592	111394119
+chr10	112274705	112275160
+chr10	121370693	121371382
+chr10	124375173	124375659
+chr10	126510106	126510453
+chr11	149250	150200
+chr11	1349084	1349682
+chr11	2352437	2353696
+chr11	3272364	3274007
+chr11	3318315	3319738
+chr11	8999006	9000772
+chr11	13144524	13145078
+chr11	23790500	23791237
+chr11	41324679	41325495
+chr11	44684574	44685677
+chr11	44892409	44893271
+chr11	47324163	47324968
+chr11	57386792	57387238
+chr11	59007589	59008404
+chr11	62045496	62046050
+chr11	64155434	64155789
+chr11	64532555	64534547
+chr11	64699735	64700173
+chr11	65006194	65006726
+chr11	65357621	65358012
+chr11	65504219	65504713
+chr11	66261822	66262774
+chr11	67288563	67289045
+chr11	67319161	67319645
+chr11	68487153	68488097
+chr11	68835723	68837379
+chr11	68874877	68875306
+chr11	69071608	69072291
+chr11	71839065	71839439
+chr11	72214043	72214517
+chr11	76645159	76645491
+chr11	77291600	77292632
+chr11	85820933	85822886
+chr11	93615180	93616008
+chr11	102303212	102304146
+chr11	106016049	106016919
+chr11	119378183	119379535
+chr11	128183943	128185208
+chr11	128800012	128801505
+chr11	129717650	129718220
+chr11	129961919	129962529
+chr11	130954498	130955042
+chr11	133961947	133964726
+chr12	2001129	2001669
+chr12	7323604	7325160
+chr12	12718428	12718866
+chr12	12792610	12793850
+chr12	12801034	12802571
+chr12	21483600	21484001
+chr12	22452116	22452826
+chr12	25859762	25860424
+chr12	28362448	28363229
+chr12	30927362	30928219
+chr12	42620651	42621521
+chr12	43478903	43479399
+chr12	46478563	46479545
+chr12	47251731	47252615
+chr12	56469965	56470398
+chr12	57246936	57247937
+chr12	57260644	57261474
+chr12	58278837	58279409
+chr12	58911676	58912752
+chr12	59089007	59089654
+chr12	60691676	60692448
+chr12	61037905	61038443
+chr12	66382370	66382855
+chr12	68940824	68941964
+chr12	69583053	69584085
+chr12	70548698	70549469
+chr12	75822471	75823122
+chr12	76592208	76593149
+chr12	77066677	77067348
+chr12	88597466	88597946
+chr12	89485046	89485872
+chr12	90179895	90180559
+chr12	93076974	93077881
+chr12	93629271	93629731
+chr12	94410802	94412020
+chr12	102259155	102259559
+chr12	105928553	105929176
+chr12	107338790	107339519
+chr12	109191258	109191688
+chr12	110593993	110594881
+chr12	111763287	111764369
+chr12	120791359	120792065
+chr12	121419190	121419612
+chr12	121427491	121428053
+chr12	122185116	122186945
+chr12	125016462	125016837
+chr12	125106781	125107264
+chr12	132970318	132971136
+chr12	133001364	133001806
+chr12	133109459	133110292
+chr13	25305565	25306102
+chr13	34057892	34059164
+chr13	41726120	41726717
+chr13	43540073	43540598
+chr13	45281710	45282196
+chr13	49289851	49290585
+chr13	49951559	49952365
+chr13	50166357	50167148
+chr13	99793075	99793654
+chr13	103350818	103351392
+chr13	108669536	108670512
+chr13	109553009	109553677
+chr13	111395725	111396526
+chr13	111445676	111446377
+chr13	114089595	114092047
+chr13	114246773	114249103
+chr13	114319594	114321097
+chr13	114510259	114512808
+chr13	114553220	114554685
+chr13	114848792	114852863
+chr13	114951383	114951996
+chr14	24093996	24094503
+chr14	31747950	31748675
+chr14	35893322	35893856
+chr14	39754791	39755574
+chr14	52638574	52640155
+chr14	52662928	52663479
+chr14	54925712	54926282
+chr14	55778939	55779945
+chr14	61071886	61072892
+chr14	61078324	61079196
+chr14	64278185	64279126
+chr14	65861904	65862516
+chr14	68176246	68177530
+chr14	69268183	69268905
+chr14	70209945	70210729
+chr14	71617095	71618131
+chr14	74028648	74029852
+chr14	75168736	75169583
+chr14	75431455	75431883
+chr14	90941542	90942111
+chr14	92710800	92711560
+chr14	93106018	93107333
+chr14	96457900	96458484
+chr14	96694374	96695415
+chr14	96709174	96710586
+chr14	100143658	100145040
+chr14	103142452	103144538
+chr14	103634819	103635650
+chr14	103659058	103659724
+chr14	103705107	103705998
+chr14	105272550	105273167
+chr14	105373539	105374438
+chr14	105545393	105546235
+chr14	105578788	105579402
+chr14	105623699	105624070
+chr15	28314729	28315866
+chr15	35099132	35100691
+chr15	41191942	41192821
+chr15	43467997	43468955
+chr15	62553761	62555236
+chr15	63390533	63391071
+chr15	65091661	65092155
+chr15	65644296	65644938
+chr15	66973450	66974247
+chr15	67225692	67226607
+chr15	68210954	68211391
+chr15	68648922	68649674
+chr15	75434599	75435897
+chr15	75772959	75773443
+chr15	76900575	76900822
+chr15	82613339	82614528
+chr15	82911026	82911487
+chr15	85811286	85811839
+chr15	89399380	89400156
+chr15	90410352	90410931
+chr15	93323065	93323540
+chr15	101128569	101129626
+chr15	101314652	101315201
+chr16	553909	554964
+chr16	1248743	1249593
+chr16	4189994	4190694
+chr16	4394248	4395019
+chr16	4948432	4948847
+chr16	11493878	11494400
+chr16	11659404	11660090
+chr16	24120724	24121373
+chr16	28672928	28673357
+chr16	48626029	48627741
+chr16	53457750	53458358
+chr16	57568132	57568634
+chr16	66985249	66985726
+chr16	69037215	69037939
+chr16	75210634	75211410
+chr16	75776227	75776906
+chr16	84922091	84922522
+chr16	84963386	84965172
+chr16	85212716	85214364
+chr16	85242224	85243377
+chr16	86006064	86007726
+chr16	86061231	86062009
+chr16	86371219	86372228
+chr16	86382598	86383977
+chr16	88345455	88345980
+chr16	88376707	88377492
+chr16	89063742	89064570
+chr16	89074498	89075871
+chr16	89733297	89734042
+chr16	90213692	90214650
+chr17	1021570	1022215
+chr17	1172855	1174846
+chr17	1593256	1593903
+chr17	1642056	1645418
+chr17	7877946	7878600
+chr17	10108802	10109540
+chr17	16719837	16720152
+chr17	16852173	16852842
+chr17	17291986	17292443
+chr17	17323074	17323712
+chr17	18278669	18279063
+chr17	18354595	18354990
+chr17	20587768	20588247
+chr17	20887071	20889333
+chr17	21284681	21285055
+chr17	26819649	26820082
+chr17	27284559	27284997
+chr17	27361541	27362028
+chr17	28977850	28978595
+chr17	30408348	30409105
+chr17	36217917	36218735
+chr17	39267547	39268325
+chr17	39821023	39821493
+chr17	39926226	39926608
+chr17	41743868	41744284
+chr17	41783660	41784090
+chr17	42257053	42257715
+chr17	42343635	42344301
+chr17	42700686	42701055
+chr17	46532211	46532976
+chr17	47262632	47263337
+chr17	47541232	47541849
+chr17	48302787	48303480
+chr17	54458294	54458724
+chr17	55006671	55007513
+chr17	58510350	58510795
+chr17	58569137	58569632
+chr17	61018594	61019182
+chr17	61582722	61583209
+chr17	62368616	62369291
+chr17	67694191	67695122
+chr17	67817781	67818408
+chr17	73816203	73816628
+chr17	76142578	76142963
+chr17	76286498	76287234
+chr17	77011799	77012358
+chr17	80181922	80182637
+chr17	80298639	80299185
+chr18	9050406	9051344
+chr18	9053095	9053862
+chr18	9410388	9410953
+chr18	12981168	12981512
+chr18	22222235	22222890
+chr18	47079725	47080493
+chr18	55556091	55556675
+chr18	74460652	74461287
+chr19	513166	513903
+chr19	605090	605819
+chr19	761261	762061
+chr19	771278	772488
+chr19	965087	965439
+chr19	966711	967538
+chr19	1282268	1282976
+chr19	1695474	1695855
+chr19	2312238	2312720
+chr19	2515123	2515486
+chr19	2630298	2631878
+chr19	2712994	2714274
+chr19	2715320	2715850
+chr19	3146091	3146541
+chr19	3267611	3268244
+chr19	3272936	3273881
+chr19	3302629	3303251
+chr19	3307730	3308544
+chr19	3316225	3317708
+chr19	3646819	3647364
+chr19	3683969	3685006
+chr19	3749624	3750917
+chr19	3771231	3771658
+chr19	3851783	3853010
+chr19	3868955	3869357
+chr19	4187380	4187898
+chr19	4210034	4210775
+chr19	4230092	4231493
+chr19	4256456	4256965
+chr19	4320772	4323077
+chr19	4345984	4346606
+chr19	4506064	4506907
+chr19	4554748	4555343
+chr19	4590443	4591009
+chr19	4599141	4600101
+chr19	4800021	4800602
+chr19	5231791	5233684
+chr19	6626678	6627161
+chr19	7445834	7446219
+chr19	7625167	7625610
+chr19	8139374	8139916
+chr19	8160176	8161240
+chr19	8321168	8321732
+chr19	10203286	10204164
+chr19	11337084	11338286
+chr19	11459822	11460575
+chr19	11832847	11834033
+chr19	12186213	12188823
+chr19	12460742	12461543
+chr19	13813341	13814171
+chr19	14028873	14029280
+chr19	14308103	14308457
+chr19	17015440	17015976
+chr19	17594447	17594786
+chr19	17659924	17660297
+chr19	17994649	17995149
+chr19	18241172	18241765
+chr19	18255877	18256574
+chr19	18577656	18579226
+chr19	18914353	18914810
+chr19	22654040	22655654
+chr19	23109971	23110960
+chr19	34570949	34571462
+chr19	35448568	35449946
+chr19	38855078	38855513
+chr19	39425907	39426460
+chr19	44302025	44302649
+chr19	44376530	44377762
+chr19	45212186	45213437
+chr19	45320430	45320792
+chr19	45822287	45822777
+chr19	45858466	45858980
+chr19	46673575	46674287
+chr19	47509075	47509433
+chr19	47992550	47992937
+chr19	48939852	48940288
+chr19	48944634	48946755
+chr19	49337615	49339267
+chr19	49450353	49450875
+chr19	49507792	49508126
+chr19	49964385	49964799
+chr19	50276939	50277305
+chr19	53714682	53716837
+chr19	55816678	55817306
+chr19	56853225	56853759
+chr19	58763348	58763897
+chr2	126373	126748
+chr2	182472	182865
+chr2	1706617	1708781
+chr2	3638045	3639798
+chr2	3663148	3664328
+chr2	9998373	9999351
+chr2	10338479	10339140
+chr2	10610956	10611748
+chr2	11899708	11900689
+chr2	19350394	19351123
+chr2	20220947	20221800
+chr2	20404509	20405054
+chr2	20738760	20739576
+chr2	25856169	25856581
+chr2	36852425	36852962
+chr2	36937889	36938672
+chr2	36947164	36947793
+chr2	36957431	36958163
+chr2	38639351	38640058
+chr2	42242075	42242696
+chr2	48782640	48784900
+chr2	68855974	68856797
+chr2	71387558	71388151
+chr2	72300114	72301178
+chr2	86108890	86109547
+chr2	86169273	86170107
+chr2	86188096	86188718
+chr2	97044831	97045834
+chr2	97096067	97096753
+chr2	101072656	101073402
+chr2	109702440	109702940
+chr2	110807116	110809001
+chr2	112321859	112322239
+chr2	127880827	127881333
+chr2	127891506	127891835
+chr2	128800441	128801396
+chr2	135829645	135830860
+chr2	141631332	141632211
+chr2	143459643	143460070
+chr2	157815359	157816075
+chr2	160925090	160925894
+chr2	161609977	161610925
+chr2	161843114	161843982
+chr2	162005742	162006280
+chr2	173057078	173058874
+chr2	173208845	173209390
+chr2	175374741	175376076
+chr2	180066528	180067176
+chr2	190860269	190861070
+chr2	196413209	196413816
+chr2	196431917	196432858
+chr2	217290130	217290662
+chr2	218981019	218981868
+chr2	224984524	224984977
+chr2	229399924	229400792
+chr2	231386010	231386564
+chr2	231389759	231390741
+chr2	232296309	232296685
+chr2	235605631	235606629
+chr2	235950036	235952732
+chr2	241201678	241202571
+chr20	3620886	3621537
+chr20	3676861	3677243
+chr20	30763248	30763848
+chr20	31311071	31311674
+chr20	32286385	32286897
+chr20	32535501	32536181
+chr20	33245854	33246418
+chr20	36966040	36966849
+chr20	42437779	42438697
+chr20	48118395	48118980
+chr20	48162058	48162614
+chr20	48502060	48502503
+chr20	48836001	48837397
+chr20	48861056	48861805
+chr20	48867111	48868850
+chr20	48895560	48896162
+chr20	49237718	49238099
+chr20	49916445	49917657
+chr20	60840367	60840936
+chr20	61624482	61625115
+chr20	61934653	61936109
+chr20	62117554	62118711
+chr20	62776683	62777358
+chr21	18664154	18665236
+chr21	40137969	40138448
+chr21	44235182	44235780
+chr21	44737870	44738661
+chr21	45206391	45207466
+chr21	45328198	45328632
+chr21	47589065	47590958
+chr22	19922461	19923561
+chr22	30453355	30453776
+chr22	31989418	31989968
+chr22	36060834	36061710
+chr22	37543402	37543849
+chr22	37784396	37785412
+chr22	37785694	37786526
+chr22	37807653	37808152
+chr22	39451684	39452281
+chr22	39617800	39619094
+chr22	39666806	39667656
+chr22	42027574	42028134
+chr22	42429574	42430200
+chr22	42452565	42453494
+chr22	42871158	42871505
+chr22	45884657	45885336
+chr22	46357550	46358042
+chr22	50505668	50506261
+chr3	11068377	11069165
+chr3	11165021	11165356
+chr3	14369948	14370837
+chr3	14397291	14397887
+chr3	15953865	15954400
+chr3	16122965	16123773
+chr3	16532632	16533086
+chr3	29282642	29283057
+chr3	33007008	33007731
+chr3	46473104	46473994
+chr3	49265574	49266583
+chr3	50344920	50345743
+chr3	51490240	51491127
+chr3	52113949	52114346
+chr3	58633316	58634045
+chr3	66149858	66150204
+chr3	66592817	66593407
+chr3	98877761	98878774
+chr3	100730622	100731681
+chr3	105793687	105794639
+chr3	111380515	111381335
+chr3	119873412	119874387
+chr3	121882730	121883342
+chr3	123610696	123611432
+chr3	125806460	125806813
+chr3	125913198	125914022
+chr3	127609480	127610341
+chr3	128275905	128276793
+chr3	128779012	128779544
+chr3	129303453	129304001
+chr3	132189251	132190101
+chr3	133205462	133206121
+chr3	142006562	142007863
+chr3	149416125	149417072
+chr3	149548411	149549312
+chr3	149794062	149795170
+chr3	151753692	151754242
+chr3	151755370	151756466
+chr3	159651563	159652753
+chr3	184401710	184402210
+chr3	187191439	187192018
+chr3	187403469	187404538
+chr3	193432264	193432833
+chr3	194036248	194036624
+chr3	194350102	194352000
+chr3	195370844	195371825
+chr3	196709945	196710706
+chr3	197086161	197087513
+chr3	197137414	197137943
+chr3	197163108	197163868
+chr3	197926670	197927395
+chr4	616302	617238
+chr4	740137	741586
+chr4	752045	753981
+chr4	1082437	1083239
+chr4	2370324	2370957
+chr4	3055820	3056372
+chr4	6704517	6705245
+chr4	8065532	8066274
+chr4	16146409	16147169
+chr4	19785130	19786085
+chr4	26091826	26092674
+chr4	26531939	26532367
+chr4	39372817	39373353
+chr4	39486417	39487011
+chr4	48009731	48010517
+chr4	54694878	54695628
+chr4	65552779	65553301
+chr4	88184088	88184475
+chr4	88305460	88306216
+chr4	99625733	99626322
+chr4	99766838	99767667
+chr4	108809065	108810147
+chr4	109424599	109425518
+chr4	109646455	109647102
+chr4	119530555	119531237
+chr4	125001346	125001888
+chr4	125732863	125733916
+chr4	127818190	127818634
+chr4	128328539	128329266
+chr4	133338086	133338823
+chr4	139774606	139776028
+chr4	141836695	141837445
+chr4	142776092	142777249
+chr4	142919253	142919843
+chr4	144188780	144189290
+chr4	148392019	148393146
+chr4	150243370	150243774
+chr4	152867833	152868523
+chr4	156040145	156040533
+chr4	166393951	166394618
+chr4	166877326	166877821
+chr4	184305268	184306165
+chr4	187373089	187373697
+chr4	189072259	189076009
+chr5	1326569	1329235
+chr5	8489704	8490247
+chr5	13543666	13544273
+chr5	32657126	32657686
+chr5	33868519	33869112
+chr5	34419591	34420126
+chr5	35842744	35843476
+chr5	35845244	35846102
+chr5	40089299	40089967
+chr5	40124130	40125077
+chr5	40864667	40865414
+chr5	41078471	41079310
+chr5	52564006	52564869
+chr5	53649745	53650435
+chr5	53800630	53801909
+chr5	54376264	54377283
+chr5	55104142	55104691
+chr5	55630983	55631427
+chr5	73819452	73820083
+chr5	75466786	75467291
+chr5	83063164	83063920
+chr5	90886842	90887288
+chr5	97776474	97777226
+chr5	119714085	119715122
+chr5	126443863	126444384
+chr5	131674037	131674603
+chr5	133891580	133892768
+chr5	138052950	138053485
+chr5	146959804	146960632
+chr5	148997094	148997919
+chr5	149501105	149501941
+chr5	149916677	149918165
+chr5	150340313	150341149
+chr5	157084348	157085187
+chr5	163559297	163559754
+chr5	171033419	171033867
+chr5	172181765	172182922
+chr5	172716204	172716651
+chr5	176092287	176093028
+chr5	178826830	178827734
+chr5	179680024	179680883
+chr5	180731676	180732787
+chr6	1451326	1451973
+chr6	4203783	4204694
+chr6	15931811	15932353
+chr6	16809698	16810493
+chr6	17565462	17566523
+chr6	24673436	24674275
+chr6	30819176	30819901
+chr6	30827432	30827922
+chr6	31231017	31231923
+chr6	31295878	31296780
+chr6	34441690	34442186
+chr6	34525930	34526520
+chr6	35202480	35203260
+chr6	35350989	35353093
+chr6	36716258	36716785
+chr6	36848484	36849002
+chr6	36998290	36998821
+chr6	37022198	37022897
+chr6	43866001	43866453
+chr6	62026709	62027411
+chr6	71980269	71981382
+chr6	72265691	72266203
+chr6	74739462	74739948
+chr6	75695751	75697098
+chr6	81732635	81733201
+chr6	86435877	86436393
+chr6	88445492	88446499
+chr6	110215185	110215725
+chr6	111483601	111484241
+chr6	112929969	112930680
+chr6	132495771	132496753
+chr6	133985095	133986027
+chr6	137509848	137510411
+chr6	140341224	140342264
+chr6	140451045	140451937
+chr6	145418649	145419829
+chr6	149419477	149420210
+chr6	151532201	151533002
+chr6	161632264	161633042
+chr6	161748178	161748827
+chr6	169490477	169491622
+chr7	410430	411362
+chr7	1155015	1157574
+chr7	1186965	1187614
+chr7	1732408	1733221
+chr7	1749400	1749901
+chr7	1842542	1843147
+chr7	5495552	5496399
+chr7	16987595	16988653
+chr7	17738765	17740342
+chr7	21493656	21494336
+chr7	22799784	22800297
+chr7	25058257	25059418
+chr7	30873501	30874277
+chr7	32122095	32122490
+chr7	39754046	39754738
+chr7	41781379	41781896
+chr7	41948540	41949275
+chr7	43817808	43818775
+chr7	47998408	47999764
+chr7	55454686	55455931
+chr7	55694477	55695291
+chr7	72378674	72379418
+chr7	72698331	72699352
+chr7	73249695	73250152
+chr7	73408508	73409692
+chr7	75277328	75277953
+chr7	79431227	79432075
+chr7	79695520	79696394
+chr7	81281496	81282496
+chr7	86983712	86984560
+chr7	98858027	98858405
+chr7	99486297	99486864
+chr7	101052737	101053135
+chr7	115884547	115885375
+chr7	116011176	116012466
+chr7	117798546	117799240
+chr7	127834500	127835657
+chr7	128270298	128270893
+chr7	128539339	128540076
+chr7	129999792	130000894
+chr7	130016271	130016693
+chr7	133773900	133774778
+chr7	137044380	137045525
+chr7	151016049	151016858
+chr7	151018363	151018928
+chr8	16152099	16152725
+chr8	17430512	17431263
+chr8	30104748	30105449
+chr8	32739075	32739537
+chr8	37927117	37927486
+chr8	48906192	48906875
+chr8	49162542	49163068
+chr8	49323290	49324144
+chr8	60683946	60684584
+chr8	69592638	69593453
+chr8	76904110	76904782
+chr8	85552732	85553475
+chr8	87292441	87293129
+chr8	95086803	95087793
+chr8	115929017	115929545
+chr8	117385341	117386027
+chr8	122230924	122232043
+chr8	124901793	124902600
+chr8	126381783	126382269
+chr8	126470882	126471260
+chr8	128327898	128328473
+chr8	134554132	134554570
+chr8	142420559	142420980
+chr8	143726523	143727493
+chr8	144749858	144750305
+chr8	144791458	144791944
+chr8	144866780	144867437
+chr8	145681881	145682706
+chr9	5408290	5409308
+chr9	6622406	6622853
+chr9	19434085	19434698
+chr9	36698604	36699323
+chr9	36793148	36793759
+chr9	75456597	75457176
+chr9	84570318	84571172
+chr9	91240277	91241074
+chr9	91813231	91813908
+chr9	113074255	113074851
+chr9	113807365	113808002
+chr9	114402262	114402920
+chr9	115276514	115278063
+chr9	115759196	115760314
+chr9	116137179	116137792
+chr9	116810118	116811171
+chr9	118318574	118319159
+chr9	127215138	127215852
+chr9	127219721	127220204
+chr9	130610435	130612019
+chr9	130940881	130941584
+chr9	132184270	132185155
+chr9	132450892	132451249
+chr9	132975039	132975619
+chr9	133283649	133284226
+chr9	133891199	133891916
+chr9	134691350	134691789
+chr9	136067434	136067845
+chr9	137462673	137467326
+chr9	137552129	137552940
+chr9	137892348	137893059
+chr9	140459554	140463149
+chr9	141152685	141153455
+chrX	12955027	12955461
+chrX	16241368	16242209
+chrX	25789566	25790060
+chrX	34814416	34815191
+chrX	35455803	35456218
+chrX	42333603	42334204
+chrX	46134129	46135109
+chrX	46255820	46256340
+chrX	47271874	47273199
+chrX	47974179	47974649
+chrX	71900494	71901110
+chrX	94884697	94885324
+chrX	98827571	98828122
+chrX	100227142	100228552
+chrX	105584929	105585438
+chrX	128775205	128775803
+chrX	153851990	153852790
+chrY	1956279	1957451
diff --git a/Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.4.bed b/Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.4.bed
new file mode 100644
index 0000000..3b35bad
--- /dev/null
+++ b/Tuesday/GREAT/data/SUMO2_HUMAN_CC_SUMO2profileClust_DMccGenes_AllPeaks.4.bed
@@ -0,0 +1,589 @@
+chr1	437519	438408
+chr1	544561	546248
+chr1	1013330	1014944
+chr1	1015898	1016509
+chr1	1136859	1138088
+chr1	1183411	1185088
+chr1	2354651	2355189
+chr1	6427829	6428357
+chr1	6444043	6444755
+chr1	10853645	10855947
+chr1	11125017	11125485
+chr1	12700177	12700821
+chr1	15752005	15752407
+chr1	16274114	16274477
+chr1	16298736	16299292
+chr1	16460214	16461410
+chr1	16871543	16872754
+chr1	17188150	17189287
+chr1	17198760	17200015
+chr1	17481571	17482426
+chr1	19327184	19328089
+chr1	20011156	20011570
+chr1	20013669	20014351
+chr1	20103551	20103980
+chr1	20879483	20880406
+chr1	23319540	23320342
+chr1	23688046	23689663
+chr1	24646409	24646864
+chr1	25962367	25963198
+chr1	27508096	27508988
+chr1	28006633	28007272
+chr1	31904490	31905195
+chr1	32025348	32025796
+chr1	32924119	32925254
+chr1	40004174	40004677
+chr1	40422755	40423172
+chr1	40823275	40823727
+chr1	43728783	43729590
+chr1	45262534	45262919
+chr1	46858855	46859615
+chr1	51851823	51852372
+chr1	52623641	52624442
+chr1	53603359	53603875
+chr1	55461589	55462417
+chr1	59623888	59624756
+chr1	67715611	67716287
+chr1	67978966	67980106
+chr1	77640861	77641465
+chr1	84534536	84535445
+chr1	89903669	89904311
+chr1	93944462	93945451
+chr1	94298361	94299757
+chr1	100729551	100730113
+chr1	110251286	110252290
+chr1	115800897	115801697
+chr1	147736812	147737724
+chr1	151334803	151335388
+chr1	151879673	151880307
+chr1	162512890	162513548
+chr1	171692099	171692911
+chr1	172588741	172590354
+chr1	172881794	172882434
+chr1	185547251	185548126
+chr1	192133902	192134704
+chr1	202593055	202594566
+chr1	203203932	203205037
+chr1	203935612	203936437
+chr1	207051575	207052266
+chr1	215985303	215986093
+chr1	222673386	222673886
+chr1	227841784	227843981
+chr1	228305403	228306268
+chr1	244739318	244740139
+chr1	246892228	246893010
+chr10	492977	495281
+chr10	3403768	3404405
+chr10	3986799	3987311
+chr10	17304307	17306450
+chr10	29695938	29696719
+chr10	30103558	30103924
+chr10	31058626	31060245
+chr10	32508062	32509032
+chr10	38406653	38407807
+chr10	54268302	54269113
+chr10	71247936	71249387
+chr10	88712030	88712970
+chr10	89783168	89783935
+chr10	91379760	91380624
+chr10	95207722	95208108
+chr10	104598012	104598813
+chr10	105289250	105289696
+chr10	113101179	113101662
+chr10	114009203	114010216
+chr10	121404453	121404970
+chr11	189432	190372
+chr11	321184	322684
+chr11	397895	399245
+chr11	518811	520615
+chr11	964703	965393
+chr11	1438564	1440123
+chr11	2958859	2960277
+chr11	3135265	3136452
+chr11	3161077	3161632
+chr11	3210819	3211681
+chr11	3540890	3541468
+chr11	10905716	10906335
+chr11	35890001	35890551
+chr11	47897174	47897935
+chr11	61393002	61393360
+chr11	61766627	61767260
+chr11	61855643	61856539
+chr11	61990407	61991252
+chr11	67301381	67302233
+chr11	67660457	67661098
+chr11	67900159	67900707
+chr11	76045874	76046577
+chr11	76525354	76527641
+chr11	76767729	76768281
+chr11	76962078	76962861
+chr11	94548776	94549610
+chr11	109924081	109925408
+chr11	115679018	115679749
+chr11	128868861	128869535
+chr12	344741	345873
+chr12	562136	563022
+chr12	6810535	6810963
+chr12	7320543	7321480
+chr12	13206192	13207212
+chr12	31761141	31761886
+chr12	32001855	32002671
+chr12	32196745	32197375
+chr12	51305759	51306913
+chr12	51309872	51310641
+chr12	56836823	56837571
+chr12	57276001	57276694
+chr12	58039589	58040495
+chr12	58054922	58055648
+chr12	65877488	65878544
+chr12	75724021	75724329
+chr12	75851361	75852306
+chr12	88860045	88860568
+chr12	91323220	91324013
+chr12	92993631	92994392
+chr12	93122049	93122628
+chr12	95786781	95787643
+chr12	104628599	104629274
+chr12	111742273	111742921
+chr12	120394876	120395533
+chr12	120774133	120774678
+chr12	120775419	120776127
+chr12	121625988	121626409
+chr12	125216116	125216918
+chr12	125303681	125304019
+chr12	133778600	133781472
+chr13	21575571	21575987
+chr13	27567745	27568324
+chr13	33505667	33506111
+chr13	38105144	38105878
+chr13	41749585	41750307
+chr13	41842531	41843636
+chr13	49000788	49002858
+chr13	50451564	50452655
+chr13	66345700	66346577
+chr13	114278651	114281143
+chr13	114428128	114429656
+chr14	31744698	31745712
+chr14	35840132	35840632
+chr14	52788640	52789946
+chr14	54664915	54665658
+chr14	71414217	71415195
+chr14	77557724	77558350
+chr14	78100224	78100970
+chr14	96579953	96580983
+chr14	100470501	100471350
+chr14	105284214	105284612
+chr15	25419191	25419734
+chr15	30203344	30204654
+chr15	43420587	43421227
+chr15	49917392	49918165
+chr15	50052852	50053778
+chr15	51904512	51905407
+chr15	52378410	52379154
+chr15	58620129	58620592
+chr15	64231382	64232270
+chr15	66976570	66977179
+chr15	71200186	71200935
+chr15	75987903	75988873
+chr15	82752112	82753293
+chr15	82986844	82987799
+chr15	83128666	83129680
+chr15	84856215	84857367
+chr15	84961214	84962211
+chr15	85450911	85451320
+chr15	85735136	85736181
+chr15	89477554	89478142
+chr15	90657578	90658293
+chr16	997522	1002055
+chr16	1142360	1144141
+chr16	1472286	1472704
+chr16	2904673	2905149
+chr16	3255661	3256545
+chr16	3285945	3286715
+chr16	4589859	4590335
+chr16	11761037	11762132
+chr16	14948586	14949066
+chr16	15539228	15539726
+chr16	16074925	16075719
+chr16	16075835	16076453
+chr16	18552344	18552786
+chr16	28998213	28999172
+chr16	57473549	57474435
+chr16	67368890	67369351
+chr16	68597006	68599027
+chr16	85151555	85152021
+chr16	86306216	86307072
+chr16	88320407	88321613
+chr16	89149663	89150956
+chr16	89252097	89254070
+chr16	89744461	89745308
+chr16	89751337	89751859
+chr17	278011	278709
+chr17	1211293	1215044
+chr17	5084186	5087914
+chr17	7441238	7441927
+chr17	18988844	18989940
+chr17	19041110	19041927
+chr17	19068501	19069867
+chr17	19115269	19116137
+chr17	26588904	26589862
+chr17	28978784	28979245
+chr17	28987484	28988039
+chr17	29043971	29044869
+chr17	29965093	29966075
+chr17	30394794	30395284
+chr17	30403481	30403956
+chr17	30405351	30405636
+chr17	37153078	37153694
+chr17	37202270	37203914
+chr17	38444637	38445499
+chr17	39841986	39842434
+chr17	41740595	41741098
+chr17	42285907	42286452
+chr17	47206557	47207144
+chr17	48957433	48957879
+chr17	58104821	58105155
+chr17	58169355	58171145
+chr17	66104495	66105015
+chr17	73644017	73644461
+chr17	77010184	77010825
+chr17	78129135	78129906
+chr17	78954099	78954811
+chr17	79223028	79223435
+chr17	80543967	80544545
+chr17	81153141	81153909
+chr18	9502731	9503639
+chr18	22283149	22283747
+chr18	43379038	43380043
+chr18	67938791	67939546
+chr19	219655	220387
+chr19	462662	463285
+chr19	597217	598069
+chr19	668783	669435
+chr19	715277	715746
+chr19	719253	719902
+chr19	722608	722979
+chr19	747705	748130
+chr19	763224	763600
+chr19	853175	854362
+chr19	970551	971335
+chr19	972289	972703
+chr19	1309760	1310461
+chr19	1676196	1676682
+chr19	1771036	1771585
+chr19	1935483	1935959
+chr19	2250796	2252853
+chr19	2497195	2497582
+chr19	2648503	2649069
+chr19	2852444	2854251
+chr19	2877089	2878472
+chr19	2933232	2934702
+chr19	3056387	3057192
+chr19	3146634	3147186
+chr19	3222651	3223073
+chr19	3380794	3381219
+chr19	3400965	3401378
+chr19	3402484	3403207
+chr19	3410206	3410775
+chr19	3661277	3661711
+chr19	3721117	3721887
+chr19	3732013	3732568
+chr19	4233367	4233953
+chr19	4241796	4242210
+chr19	4267051	4267676
+chr19	4505177	4505611
+chr19	4645659	4646122
+chr19	4677184	4677814
+chr19	4730777	4731315
+chr19	5534743	5535433
+chr19	10199636	10200041
+chr19	10243507	10243963
+chr19	10624729	10625730
+chr19	11319790	11322832
+chr19	11436263	11436577
+chr19	11762624	11763938
+chr19	12089828	12091064
+chr19	12637051	12639106
+chr19	12738537	12739767
+chr19	12994631	12995150
+chr19	13791467	13792126
+chr19	14109541	14110348
+chr19	14579831	14580288
+chr19	16331481	16332551
+chr19	16370868	16371411
+chr19	16399371	16399891
+chr19	16408694	16409685
+chr19	16427337	16427835
+chr19	17686669	17687403
+chr19	18124002	18124451
+chr19	18183075	18183582
+chr19	18210409	18210845
+chr19	18233624	18234147
+chr19	18254643	18255147
+chr19	18340291	18340671
+chr19	18461202	18461681
+chr19	18467815	18468368
+chr19	18508405	18509088
+chr19	19242792	19243149
+chr19	35876607	35877229
+chr19	42169875	42170432
+chr19	43190516	43191429
+chr19	44195788	44196479
+chr19	44978756	44982365
+chr19	45538998	45539453
+chr19	45727174	45727564
+chr19	46581758	46582949
+chr19	46892615	46893219
+chr19	47883776	47884235
+chr19	48089141	48089691
+chr19	48786537	48787096
+chr19	48854554	48855166
+chr19	49055679	49056047
+chr19	50308767	50309490
+chr19	58960271	58960614
+chr19	59018919	59019498
+chr2	9273603	9274505
+chr2	11558002	11558564
+chr2	29467462	29469011
+chr2	40017184	40018240
+chr2	43004960	43005678
+chr2	46869399	46870524
+chr2	61873589	61874514
+chr2	63973515	63974093
+chr2	65089707	65090153
+chr2	67331513	67332238
+chr2	86002488	86003039
+chr2	87429562	87430438
+chr2	112519743	112520925
+chr2	113617023	113618143
+chr2	114407634	114411977
+chr2	114737041	114737890
+chr2	120550325	120551079
+chr2	122439965	122441089
+chr2	129226515	129227391
+chr2	134867988	134868571
+chr2	151002683	151004004
+chr2	151434813	151435817
+chr2	153117407	153117945
+chr2	172487443	172488481
+chr2	172687861	172688396
+chr2	174210649	174211219
+chr2	175536140	175536998
+chr2	192371795	192372747
+chr2	220339080	220339418
+chr2	227155765	227156713
+chr2	232274899	232275406
+chr2	232417337	232418058
+chr2	238077631	238078115
+chr2	238149233	238150995
+chr2	242465168	242465904
+chr2	242699217	242700948
+chr2	242838487	242839174
+chr2	242948328	242952932
+chr20	4625719	4626184
+chr20	17638773	17639351
+chr20	19697057	19697531
+chr20	32324614	32325472
+chr20	36009582	36010038
+chr20	36028097	36028601
+chr20	36870653	36872423
+chr20	46055725	46056364
+chr20	48669852	48670714
+chr20	48849120	48849606
+chr20	48909921	48911465
+chr20	49063722	49064610
+chr20	62718363	62719152
+chr21	34739500	34740205
+chr21	36396341	36396856
+chr21	47534823	47535236
+chr22	24825475	24825927
+chr22	30490660	30491215
+chr22	35924996	35925490
+chr22	36466703	36467175
+chr22	36605303	36606231
+chr22	39299885	39300621
+chr22	39380023	39380684
+chr22	39645303	39645808
+chr22	43074602	43075039
+chr22	43492370	43493029
+chr22	44698372	44698920
+chr22	45007495	45008388
+chr22	50714534	50714996
+chr22	51087009	51087832
+chr3	24359972	24361199
+chr3	27656000	27656713
+chr3	30318910	30319496
+chr3	45114709	45115305
+chr3	46958743	46959276
+chr3	47500948	47501741
+chr3	49270791	49271582
+chr3	52762508	52763346
+chr3	53242643	53243220
+chr3	58677475	58678223
+chr3	86909274	86909846
+chr3	119835292	119836264
+chr3	122300512	122300954
+chr3	128572993	128573894
+chr3	128720395	128723027
+chr3	135675861	135676657
+chr3	149169675	149170816
+chr3	149903313	149903749
+chr3	170056360	170056997
+chr3	171571887	171573239
+chr3	178705466	178706053
+chr3	194036760	194037144
+chr3	195333166	195333989
+chr3	195876639	195877167
+chr3	196575231	196575805
+chr3	197186217	197187230
+chr3	197243143	197246397
+chr3	197290833	197291681
+chr4	434637	438198
+chr4	1391072	1392558
+chr4	1739968	1740743
+chr4	17141191	17142529
+chr4	26114694	26115748
+chr4	26316934	26317719
+chr4	55107289	55108115
+chr4	89040803	89041799
+chr4	99851926	99852540
+chr4	101151985	101152627
+chr4	114397331	114398667
+chr4	120351613	120352250
+chr4	129170512	129171589
+chr4	140559288	140560494
+chr4	153841685	153842321
+chr4	173891232	173891865
+chr4	177276090	177276462
+chr4	177876271	177876944
+chr4	178218993	178219626
+chr5	613047	613647
+chr5	1332872	1334047
+chr5	1456209	1456943
+chr5	32187718	32188196
+chr5	32339056	32340404
+chr5	33869253	33870251
+chr5	53047724	53048628
+chr5	53642953	53643789
+chr5	71696493	71697423
+chr5	108622065	108622891
+chr5	133598249	133599070
+chr5	133619760	133621300
+chr5	133881232	133881563
+chr5	140007477	140008097
+chr5	140143337	140144841
+chr5	143460849	143461734
+chr5	151108986	151109743
+chr5	171794573	171795272
+chr5	171823936	171824674
+chr5	172995633	172996107
+chr5	173019005	173019776
+chr5	180863947	180864857
+chr6	147713	149345
+chr6	3090815	3094501
+chr6	14272529	14273181
+chr6	28610982	28611519
+chr6	30836846	30837656
+chr6	31304226	31305263
+chr6	31857336	31857806
+chr6	33119525	33120529
+chr6	35876516	35876992
+chr6	53423800	53424384
+chr6	101618883	101619385
+chr6	112649663	112650701
+chr6	122118320	122119314
+chr6	130912474	130913081
+chr6	130965195	130966470
+chr6	132429941	132431608
+chr6	132855266	132855952
+chr6	141265794	141266344
+chr6	144523738	144524783
+chr6	148974015	148974909
+chr6	148987046	148988086
+chr6	171021845	171022720
+chr7	302722	304282
+chr7	508997	511122
+chr7	1396372	1398091
+chr7	1803157	1804050
+chr7	2535962	2536491
+chr7	2572203	2572792
+chr7	5103216	5105407
+chr7	6714488	6716131
+chr7	17498303	17498993
+chr7	32557965	32558743
+chr7	33109797	33110445
+chr7	41796275	41796915
+chr7	47525400	47525840
+chr7	73377512	73378803
+chr7	73809989	73810491
+chr7	75435763	75436583
+chr7	76345664	76346280
+chr7	92800819	92801539
+chr7	99128697	99129663
+chr7	99668303	99669647
+chr7	102688948	102689789
+chr7	127878804	127879795
+chr7	127920209	127921253
+chr7	127931492	127932146
+chr7	129225590	129226613
+chr7	134254667	134255301
+chr7	151008313	151009076
+chr7	152430124	152430967
+chr8	44327	44960
+chr8	22340827	22341395
+chr8	22903993	22904532
+chr8	22910321	22910847
+chr8	37778699	37779286
+chr8	37879735	37880613
+chr8	38370314	38370707
+chr8	38549677	38550951
+chr8	38669128	38670129
+chr8	42108492	42108998
+chr8	42965197	42966012
+chr8	49223846	49224363
+chr8	49632587	49633558
+chr8	67161643	67162339
+chr8	94919705	94920900
+chr8	96114690	96115527
+chr8	117081314	117082093
+chr8	122474011	122474427
+chr8	128058822	128059705
+chr8	131669179	131670227
+chr8	134411237	134411991
+chr8	142354333	142354768
+chr8	144750950	144751670
+chr8	144833861	144834216
+chr9	16996479	16997707
+chr9	33339968	33340749
+chr9	84047596	84048319
+chr9	94692353	94693258
+chr9	95746087	95746813
+chr9	98089163	98090078
+chr9	101772483	101773882
+chr9	114330245	114331220
+chr9	117724659	117725660
+chr9	124258306	124258684
+chr9	126889098	126889935
+chr9	127204555	127205051
+chr9	127205838	127206346
+chr9	130655042	130655534
+chr9	131962218	131962936
+chr9	132147799	132148239
+chr9	132276682	132277236
+chr9	133780957	133781397
+chr9	134087097	134087863
+chr9	135906755	135907311
+chr9	137441533	137442352
+chr9	137503977	137505041
+chr9	138993174	138993810
+chr9	139422496	139423149
+chr9	139429777	139430811
+chr9	139453724	139454436
+chr9	139649907	139650927
+chr9	139766814	139767410
+chr9	140222045	140224570
+chr9	140249759	140250334
+chr9	140288522	140289145
+chrX	184858	187489
+chrX	34820739	34821459
+chrY	134849	137464
diff --git a/Tuesday/GREAT_analysis_forEpigenomicData.md b/Tuesday/GREAT_analysis_forEpigenomicData.md
deleted file mode 100644
index 8b13789..0000000
--- a/Tuesday/GREAT_analysis_forEpigenomicData.md
+++ /dev/null
@@ -1 +0,0 @@
-
-- 
GitLab