diff --git a/README.md b/README.md index 699258c7cb77a1b8a73e943bfd01857b07ff7b2c..4df4ca2ee6965ef669c16b1c22ecad28e3e0b400 100644 --- a/README.md +++ b/README.md @@ -1,34 +1,6 @@ # PHINDaccess FUNOMICs -## Material for practicals - -Biological material & question: - - -**Datasets used for practical:** - -Giulia Manina -Melanie Hamon - - -## Data - - - - -**Annotation Hands-On:** - -``` -``` - - - -**ATAC-seq Hands-On:** - -``` -``` - ## Hands-on programme | Course | training | @@ -37,16 +9,18 @@ Melanie Hamon | Functional annotation: Annotation advanced | [Hands-on](Monday/Annotation_advanced.md) | | Integration: Functional integration | [Hands-on](Tuesday/Functional integration.Rmd) | | Functional analysis: ORA and GSEA | [Hands-on](Tuesday/ORA_and_GSEA.Rmd) | -| Functional analysis: GREAT | [Hands-on](Tuesday/GREAT.md) | -| ATACseq: analysis | [Hands-on](Wednesday/ATACflow.md) | -| ChIPseq: Differential binding | [Hands-on](Thursday/chipflowR.md) | -| ChIPseq: Peak annotation | [Hands-on](Thursday/peak_annotation.Rmd ) | -| ChIPseq: Motif finding | [Hands-on](Thursday/MEME.md) | - +| Functional analysis: GREAT | [Hands-on](Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md) | +| Functional analysis: methylGSA | [Hands-on](Tuesday/methylGSA_Functional_analysis/FuncAnalysis_methylGSA.Rmd) | +| Descriptive analysis: analysis | [Hands-on](Wednesday/Descriptive_analysis.Rmd) | +| Predictive analysis: analysis | [Hands-on](Wednesday/PLS.Rmd) | +| Integration: Differential binding | [Hands-on](Wednesday/MFA.Rmd) | +| Integration: Differential binding | [Hands-on](Wednesday/ICA.Rmd) | +| Networks: PPIs | [Hands-on](Thursday/STRING.md ) | +| Networks: Regulatory networks | [Hands-on](Thursday/OmicsNet.md) | ## Friday session : questions -Feel free to add your questions here : +Feel free to add your questions here: https://docs.google.com/document/d/1MjZz2wyQqiZbSD386N6xOYZvPDgibRvBerXzbgKRJp8/edit?usp=sharing